[ITK-users] [ANN] ITK 4.9 Release Candidate 3 is ready for testing!
Matt McCormick
matt.mccormick at kitware.com
Tue Dec 22 18:57:04 EST 2015
On behalf of the Insight Toolkit community, we are proud to announce
that ITK 4.9 release candidate 3 has been tagged and is available for
testing! Please take this opportunity to test the new features in the
release candidate.
To obtain the source code,
git clone http://itk.org/ITK.git
cd ITK
git checkout -q --detach v4.9rc03
For more details, please see the Git documentation [1].
A few selected highlights for this release:
* New Remote modules: the Cuberille module for smooth generation of
meshes from binary segmentation images, and the
AnisotropicDiffusionLBR module improved edge-preserving smoothing.
* Build your own ITK module outside the source tree, add continuous
integration testing on GitHub, and easily add Python wrapping for your
C++ algorithms.
* Python wrapping, including Python 3, builds faster with a more
standard installation
* Improved performance of itk::Image::GetPixel and operations on
itk::VariableLengthVector’s
* Generate a FlatStructuringElement from an image
* Point-set registration with time-varying B-splines
* Module dependencies can now be specified as public / private / compile / test
Please test the release candidate and share your experiences on the
mailing list, issue tracker, and Gerrit Code Review. The new module
dependency specification mechanism may unearth missing dependencies
for projects that use ITK COMPONENTS with the CMake find_package
command.
An Experimental build, which demonstrates how the test suite performs
on your local build system, can be submitted to the dashboard [2]
with:
mkdir ../ITK-build
cd ../ITK-build
cmake ../ITK
ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit
Visual Studio builds must also add “-C Release” to the ctest command.
Notify the mailing list if there are any unexpected failures. Testing
your own applications against the RC is also appreciated.
Congratulations and well done to the 43 contributors to this release.
We would especially like to recognize the new contributors: Mikhail
Isakov, Betsy McPhail, Luc Hermitte, Shawn Waldon, Tobias Wood,
Ricardo Ortiz, Sreekanth Arikatla, Hyun Jae Kang, Lucas Gandel, Adam
Snyder, Junjie Bai, Seun Odutola, Abhishek Tiwari, Eugene Prilepin,
Zach Williamson, Alexander Leinoff, Alexis Girault, Laurentiu Nicola,
Floris Berendsen, Max Smolens, and Pablo Hernandez-Cerdan.
Many community members stepped up to contribute fixes for this release
candidate. To allow testing and accommodate the upcoming holiday, the
final release is re-scheduled for mid-January.
Known issues in this release candidate, to be fixed before the final release:
* TransformReadWriteTest fails on Mac OSX with shared libraries.
* Mac OSX 10.6 has build errors.
[1] http://www.itk.org/Wiki/ITK/Git
[2] http://open.cdash.org/index.php?project=Insight
New Features
---------------------
* Wrapping improvements
* Python 3 supported
* Wrapping builds much faster due to CastXML binaries
* LandmarkBasedTransformInitializer now wrapped
* NumPy bridge with VisualStudio
* Wrapping for the MinimalPathExtraction module
* Wrapping is now installed into Python’s site-packages directory
in the “itk” package
* Wrapping package size is decreased
* Better package portability on Mac OSX
* New Remote Modules
* Cuberille
* Insight Journal Article: http://hdl.handle.net/10380/3186
* AnisotropicDiffusionLBR
* Insight Journal Article: http://hdl.handle.net/10380/3505
* Web browser reproducibility: http://www.kitware.com/blog/home/post/942
* Core Improvements
* External Modules can now be developed outside of the ITK source
tree and on GitHub
* Details: http://www.kitware.com/blog/home/post/997
* New utilities in itk::Math:
* AlmostEquals
* NotAlmostEquals
* ExactlyEquals
* NotExactlyEquals
* New itk::NumericTraits
* IsInteger
* IsSigned
* Improved C++11 support
* New ITK_DELETE_FUNCTION macro for “=delete”
* New ITK_NOEXCEPT macro for the “noexcept” keyword
* Improved capabilities of itk::ResourceProbe and
itk::ResourceProbesCollectorBase
* Improve numerical stability in VNL eigen system estimation
* itksys_ios:: and itksys_stl:: have been remove (use std::)
* Filtering Improvements
* Generate a FlatStructuringElement from an image
* WarpImageFilter support VectorImage’s
* ConvertLabelMap supports different LabelMap types
* ImageToPathFilter moved from the ITKReview to the ITKPath module
* itk::MovingHistogramImageFilter moved to the ITKImageFilterBase module
* Registration Improvements
* Point-set registration with time-varying B-splines
* Build Improvements
* Module dependencies can now be specified as public / private /
compile / test
* BUILD_EXAMPLES CMake option is now OFF by default
* Option to export all library symbols on Windows:
* Details: http://www.kitware.com/blog/home/post/939
* Expat third party library is now name mangled
* Many more modules can be built as shared libraries
* KWStyle is automatically built and configured when tests are built
* Performance Improvements
* New MetaProgrammingLibrary namespace (itk::mpl) holds members for
metaprogramming
* itk::mpl::{TrueType,FalseType}
* itk::mpl::{If,Not,And,Or,Xor}
* itk::mpl::EnableIf
* itk::mpl::IsBaseOf
* itk::mpl::IsConvertible
* itk::mpl::IsNumber
* itk::mpl::IsSame
* itk::mpl::PromoteType
* Image::GetPixel performance improvements
* Many itk::VariableLengthVector performance improvements
* AdaptiveHistogramEqualization uses a moving histogram
* WarpImageFilter performance improvements
* Documentation Improvements
* Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
* ITK Software Guide improvements
* How to use Python wrapping
* How to create an ITK module
* Improvements to segmentation examples
* Expanded Canny edge detection example
* Expanded tree container example
* Third Party Library Updates
* FFTW updated to latest upstream
* Build with recent OpenCV 2 and 3
* Build with the latest VTK
* PNG update to the latest upstream
* GDCM updated to the latest upstream
* KWSys updated to the latest upstream
* MINC updated to the latest upstream
* SWIG updated to the latest upstream
* Third party PNG and MINC are now Git subtrees
* Style improvements -- ITK gets more stylish with every release!
* Private copy constructors and operator= use ITK_DELETE_FUNCTION
* Improved code coverage -- we are at 84.9%!
* *Lots* of important bug fixes
* And much more! See details in the log below.
Changes from v4.9rc02..v4.9rc03
------------------------------------------------
Alexis Girault (1):
BUG: Implement SetAutoMinimumMaximum in itkScalarImageToHistogramGenerator
Bill Lorensen (1):
BUG: nifti_read_subregion_image was leaking file pointers
Brad King (7):
ENH: Teach ITK module macros to support independent header-only modules
ENH: Add script to import KWIML library source code
ENH: Add `ITKKWIML` module to provide external KWIML library
ENH: Port TIFF integer types from KWSys to KWIML
ENH: Port LSM integer types from KWSys to KWIML
ENH: Port itkIntTypes.h from KWSys to KWIML
ENH: Drop KWSys FundamentalType component
Bradley Lowekamp (1):
ENH: Add option to choose scheme for git download
Davis Vigneault (1):
STYLE: Use cstdlib return macros in ITK examples
Dženan Zukić (3):
BUG: do not pass 0,0,0 to Versor.Set()
STYLE: Removing the unused NeighborhoodRadius property
ENH: Write out transform in DeformableRegistration15
Gert Wollny (1):
BUG: Remove double-conversion from public interface, use system.
Hyun Jae Kang (8):
ENH: Use a data struct to export the system information of a probe.
ENH: Create a test for the SpawnThread function ( ITK-3317)
STYLE: Remove an unnecessary file (-w) from source code
BUG: Fixed the failed case of itkStdStreamStateSaveTest on OS X 10.8
BUG: Fixed the failed test case of itkThreadPoolTest on OS X 10.8
BUG: Fixed a failed test of ITKDistanceMapTestDriver
BUG: Fixed the failed test VideoSourceTest
PERF: Improve the performance of a test of
ITKRegistrationMethodsv4TestDriver
COMP: Fixed the compiler error of
itkDisplacementFieldToBSplineImageFilterTest
Jean-Christophe Fillion-Robin (25):
BUG: Build ITKIOTransformHDF5 as shared library. See #3393
BUG: Build ITKIOTransformMINC as shared library. See #3393
BUG: Build ITKIOTransformMatlab as shared library. See #3393
BUG: Build ITKIOTransformInsightLegacy as shared library. See #3393
STYLE: TransformIOFactory: Remove obsolete declaration. See #3393
COMP: TransformIOFactory: Add missing ctor/dtor from hxx file. See #3393
COMP: TransformFileWriter: Remove method "OpenStream()" without definition
COMP: TransformFileReaderTemplate: Remove undefined method
"CreateTransform()"
ENH: Update ITKIOPhilipsREC to allow static initialization. See #3393
ENH: Update ITKIOTransformMINC to allow static initialization. See #3393
COMP: MINC: Fix VS2008 "unknown round" build error. See #3393
COMP: MINC: Fix VS2008 "unknown arpa/inet.h" build error. See #3393
COMP: Configure ENABLE_SHARED into <ModuleName>.cmake file. See #3393
COMP: Fix configuration of IOFactory header. See #3393
STYLE: UseITK: Removed redundant code setting ImageIO factory
name. See #3393
STYLE: UseITK: Re-factor introducing _configure_IOFactoryRegisterManager
STYLE: UseITK: Set TransformIO factory and module name using convention.
BUG: Ensure Image IO factories are registered once. See #3393
BUG: Ensure Transform IO factories are registered once.
COMP: ITKIOXML: Fix VS11 "already defined std::string" link
error. See #3393
BUG: TransformIO: Implement explicit template instantiation
using "extern".
COMP: TransformIO: Fix VS build errors removing extra EXPORT
COMP: TransformIO: Handle compiler not supporting "pragma diagnostic".
COMP: TransformIO: TransformFile(Reader|Writer) still need to be exported.
COMP: TransformIO: Fix explicit instantiation approach
Johan Andruejol (1):
ENH: Add ITK_RUNTIME_LIBRARY_DIRS for external projects
KWIML Upstream (1):
KWIML 2015-12-09 (43f9f8d0)
Lucas Gandel (1):
BUG: PhysicsBasedNonRigidRegistrationMethod test failure on Debian 32bit
Matthew McCormick (16):
COMP: Fix PointDimension reference in AzimuthElevationToCartesian test.
STYLE: Improve scoping in AzimuthElevationToCartesian test.
STYLE: Explicitly mark the ProcessObject methods virtual in SignedMaurer.
BUG: Do not try to install targets that do not exist when
building externally.
BUG: ITKIOMeta needs a public dependency on ITKMetaIO.
COMP: Update LesionSizingToolkit for external build and style
test failures.
BUG: Add CMake OpenCV export code to ITKVideoBridgeOpenCV.
COMP: Improve compatibility with OpenCV 3.
DOC: Fix class references in StatisticsLabelMapFilter.
STYLE: Improved readability of itkStatisticsUniqueLabelMapFilterTest1.
DOC: Correct ReverseOrdering description in ShapeUniqueLabelMapFilter.
STYLE: Add own copy of GenerateExportHeader
COMP: Create _TEMPLATE_EXPORT macros.
COMP: TransformIOBaseTemplate must be explicitly instantiated.
BUG: Do not use dynamic_cast for DisplacementFieldType in HDF5 test.
COMP: Do not use string(MAKE_C_IDENTIFIER with CMake < 2.8.12
Max Smolens (1):
BUG: VoronoiSegmentationRGBImageFilter: add pixel dimension check
Mikhail Isakov (1):
DOC: correction in DiffusionTensor3D Reconstruction
Ricardo Ortiz (1):
BUG: Set itkBinaryImageTo*LabelMapFilter foreground/background values
Seun Odutola (1):
BUG: absolute value of tolerance taken to cater for negative spacing
Shawn Waldon (1):
COMP: OSX set deployment target when building fftw
Simon Alexander (4):
STYLE: Change to make git bash on windows happy with the function name
COMP: fixes for visual studio 2015update1 x86 in release mode
COMP: fixes for visual studio 2015update1 x86 in release mode
COMP: fixes for visual studio 2015update1 x86 in release mode
Sreekanth Arikatla (2):
BUG: Resolved const correctness in itkMatrix.h
ENH: Fixes the symmetry of AzimuthElevationToCartesianTransform
and adds tests
Changes from v4.9rc01..v4.9rc02
------------------------------------------------
Bill Lorensen (1):
BUG: Valgrind detected an invalid read
Davis Vigneault (1):
STYLE: Address some warnings when running cppcheck
Hyun Jae Kang (2):
COMP: Fixed a warning message of data-conversion on VS14
COMP: Update KWStyle to remove format-string warning message
Matthew McCormick (3):
DOC: Remove invalid wrapping example.
BUG: Wrap AdaptiveEqualizationHistogram.
COMP: Ignore Doxygen endcond warning in itkIsConvertible.h.
Seun Odutola (1):
COMP: Corrected minc2.h path installation from libsrc2/minc2.h to minc2.h
Ziv Yaniv (2):
BUG: Affine transformation was estimated without sufficient
number of points.
BUG: fixed BSpline initializer crash when reference image not set.
Changes from v4.8.0..v4.9rc01
--------------------------------------------
Abhishek Tiwari (1):
BUG: "tmpImageIndex" not initialized to 0.
Adam Snyder (1):
PERF: Reworked MMI Threading using a per-thread buffer
Alexander Leinoff (6):
ENH: Adds IsInteger and IsSigned to NumericTraits.
COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
ENH: Adds ExactlyEquals and NotExactlyEquals functions to itkMath.h
COMP: Removes floating-point equality checks
ENH: COMP: Adds support for complex values to Math::AlmostEquals
ENH: Updates fftw dependency
Arnaud Gelas (5):
COMP: fix warning (unused local typedef)
COMP: simplify ITKVideoBridgeOpenCV dependency
DOC: add doxgen documentation for BinaryImageToLevelSetImageAdaptor
ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
COMP: fix compilation error with OpenCV2 and OpenCV3
Betsy McPhail (1):
BUG: Improve buffer alignment in OctreeNode .
Bill Hoffman (2):
ENH: Use new CMake Windows export symbol dll feature.
COMP: Put vnl_export.h in the list of sources so it gets installed.
Bill Lorensen (4):
COMP: VTkGlue linker errors
BUG: Inappropriate use of AlmostEquals
ENH: Bump tag for wiki examples
ENH: Better layout strategy
Brad King (3):
ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
ENH: Update CMake Policy settings in Testing/TestExternal project
Bradley Lowekamp (31):
BUG: Avoid null deference in PrintSelf with default construction
ENH: Enable base classes for templates of landmark initializer
STYLE: Use "Swap" for ITK member name
BUG: Demonstrate Eigen analysis failure
BUG: Fix computation of Eigen analysis
ENH: Update DiscreteHessianGaussian Test baseline
ENH: Correctly demonstrate float point Eigen failure
ENH: compile vnl_math_hypot, and use at least double
ENH: Adding initial update script from used libpng version.
ENH: removing non-subtree files for itkpng
ENH: Ported ITK changes for building to subtree merged code
ENH: Update libpng update script for v1.6.9
BUG: Use ParameterValueType for computation of landmark affine
ENH: Wrap LandmarkBasedTransformInitializer
BUG: Avoid potential exception in itk::Object::UnRegister
ENH: Update itkpng zlib, configuration, and rename
ENH: Update itkpng name mangling
BUG: Use const pointer in Set method for constant ReferenceImage ivar
BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
BUG: Demonstrate side effect on registration due to BSplineScatter change
ENH: Move MovingHistogramImageFilter base classes to ImageFilterBase
BUG: Avoid potential exception in itk::Object::UnRegister
BUG: Avoid null deference in PrintSelf with default construction
BUG: Use const pointer in Set method for constant ReferenceImage ivar
ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram base
COMP: address sign unsigned comparison warning
COMP: Address signed unsigned comparison warning
COMP: Address unused member variable and methods in anonymous ns
BUG: Fix segfault when with empty IsolatedWatershed Threshold range
BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
BUG: Reduce number of targets with MSVC
Davis Vigneault (7):
DOC: Minor improvements to segmentation examples.
DOC: Expanded Canny Edge Detection Example
DOC: Expanded TreeContainer Example
COMP: Warnings in itkVTKImageExport when compiling with c++11
COMP: Warnings in FFTW Classes when compiling with c++11
COMP: Update Git Tag for Subdivision Module
COMP: Warnings in FFTW Classes when compiling with c++11
Dženan Zukić (1):
STYLE: better formatting of the "usage" message
Eugene Prilepin (1):
BUG: Fix a template name formation in python wrappings
Floris Berendsen (1):
STYLE: Improve naming conventions in comments.
Hans Johnson (29):
STYLE: Instrument for FixedParameters typedef
BUG: Demonstrate DisplacementTransformFailure
BUG: FixedParameters should be double precision
STYLE: Minor code style issues for MGHIO
COMP: Update to version for WikiExamples
ENH: Update Sphinx for ITK 4.8.0
ENH: Update MGHIO to be shared lib
ENH: Provide consistent floating point comparisons
BUG: Fix MGHIO to fix write failures
PERF: Remove floating point as sentinal value
COMP: Const correctness needs to be maintained
BUG: Preserve backwards compatibility
DOC: Provide consistent naming in comments
ENH: Conversion between transform type tolerance
STYLE: Prefer initialization to assignment
ENH: Missing ITK_OVERRIDE
COMP: Need to propagate ITKGDCM
COMP: Need to propagate ITKGDCM
COMP: Add missing ITK_OVERRIDE
STYLE: Minor code style issues for MGHIO
COMP: Update to version for WikiExamples
ENH: Update Sphinx for ITK 4.8.0
ENH: Update MGHIO to be shared lib
BUG: Fix MGHIO to fix write failures
ENH: C++11 allows for rigorous =delete
COMP: Remove unnecessary failing assert test
ENH: Ignore internal files for the Clion editor
COMP: Fix VNL compilation for wider C++11 support
BUG: In configuration test need to mirror code
Hyun Jae Kang (27):
BUG: Remove std::cout calls from class
BUG: Avoid an unexpected output of static_cast
BUG: Update python example codes for ImageRegistration
BUG: Retrieve the missed wrap file
BUG: itkVTKImageIO class does not handle blank lines in VTK file header.
BUG: Fix HDF5 CMake configuration with VS2015
BUG: Fix a compilation issue on ITK4 with FFTW and shared libraries
BUG: Fixed older XCode linking error
ENH: Use CastXML binaries when building with x86_64 Mac OS X
BUG: Remove std::cout calls from class
BUG: itkVTKImageIO class does not handle blank lines in VTK file header.
BUG: Fixed older XCode linking error
ENH: Add automatic KWStyle build and configuration setup
COMP: KWStyle shadow, format-nonliteral and autological-compare warning.
COMP: Fixed the warning messages from itkGPU Module
COMP: Fixed a warning message of unused-private-field
COMP: Apply latest version of KWStyle
COMP: Update KWStyle to fix its additional warning messages
COMP: Update KWStyle to fix its additional warning messages
COMP: Fix data-conversion warning messages on Windows
ENH: Update itkResourceProbe to calculate statistical data
COMP: Fix data-conversion warning messages on VS14
COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
ENH: Update the Report() function of itkResourceProbesCollectorBase
COMP: Fix data-conversion warning message on itkResourceProbe
COMP: Fix additional warning messages of KWStyle
COMP: Fix data-conversion warning messages
Jon Haitz Legarreta (6):
ENH: Add test for itkStatisticsUniqueLabelMapFilter
BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
BUG: Test for StatisticsUniqueLabelMapFilter stability
ENH: Add test for itkParametricStpaceToImageSpaceFilter
ENH: Improve code coverage for itkParametricSpaceToImageSpaceMeshFilter
Julien Michel (1):
ENH: Support of VectorImage as template parameters for WarpImageFilter
Junjie Bai (2):
BUG: ConvertLabelMap with different LabelMapTypes
BUG: LabelObject CopyAttribute support different LabelObject type
KWSys Robot (4):
KWSys 2015-07-10 (c9336bcf)
KWSys 2015-07-30 (f63febb7)
KWSys 2015-08-24 (cdaf522c)
KWSys 2015-08-28 (dc3fdd7f)
LIBPNG Upstream (2):
PNG 2009-04-06 (e68f5a36)
PNG 2014-02-05 (3e753eb8)
Laurentiu Nicola (2):
PERF: Avoid temporary smartptr in ProcessObject::GetInput
PERF: Optimize WarpImageFilter by avoiding refcount bouncing
Luc Hermitte (8):
PERF: itk::Image::GetPixel() performance improvment.
PERF: Performance enhancements on VariableLengthVectors 1/...
ENH: Dependencies on itkVariableLengthVector.h reduced
BUG: Error in VariableLengthVector Unit Tests
PERF: Performance enhancements on VLV 2/...
PERF: Performances enhancements on VLV 3/...
COMP: Fix signed/unsigned warnings
BUG: std::copy/fill on empty VLV
Lucas Gandel (4):
ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
BUG: Fixing ImageToPathFilter wrapping call from Review Module
STYLE: Fix KWStyle dashboard errors
BUG: Fix external module BUILD_SHARED_LIBS status
Mathieu Malaterre (1):
BUG: Name mangle the included expat third party library.
Matthew McCormick (94):
ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
ENH: Add AnisotropicDiffusionLBR Remote Module.
ENH: Bump ITK version to 4.9.0.
BUG: Remove std::cout calls from classes.
COMP: Remove unused argument in ConditionVariableNoThreads.
BUG: Implement UpdateLargestPossibleRegion for ImageToVTKImageFilter.
COMP: Add link interface specification for wrapping target_link_libraries.
STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
COMP: Fix MINCTransformIO factory registration.
COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
BUG: Initialize mutex for 32 bit AtomicInt.
ENH: Use CastXML binaries when building with x86_64 Linux.
STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
COMP: Disable the gold linker for static builds on Ubuntu 14.04.
ENH: Use Windows binaries for CastXML.
ENH: Add better scoping in igenerator.py.
BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
BUG: LevelSetsv4 used signed char instead of char.
ENH: Add better scoping to idx.py.
COMP: Define newSize and oldSize in VariableLengthVector.
STYLE: Use prefix increment operator in ImageBase.
DOC: Correct spelling of Continuous.
ENH: Add more progress information to IterativeClosestPoint2.
BUG: Build BridgeNumPy with Visual Studio.
ENH: Add ITKModuleExternal.cmake
COMP: Wrap Image< bool, D > for FlatStructuringElement.
BUG: Use CastXML binary built in Release.
BUG: ContinuousIndex should not be templated over TCoordRep.
COMP: Set CMP0054 to new.
COMP: Address line length too long for Software Guide.
COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
BUG: Support Python 3 wrapping module initialization.
BUG: Update itkTemplate.py for Python 3.
BUG: Update itkExtras.py for Python 3.
BUG: Prevent Python callback addition recursion.
BUG: Fix test scripts for Python 3.
BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
ENH: Allow projects to build against an external module.
ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
ENH: Rename _cable_ to _wrappers_.
BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
BUG: Define ITK_WRAPPING_PARSER when wrapping.
COMP: Do not use C++11 alignas in itkAlignedTypedef.
ENH: Bump CMakeLists.txt version to 4.8.1.
BUG: Pass the CMAKE_CXX_FLAGS to castxml.
ENH: Bump CastXML version to 2015-30-29.
ENH: Bump LLVM / Clang to 3.7.0.
COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
COMP: Use itkSimpleNewMacro in ThreadedIteratorRangePartitionerTest.
ENH: Add wrapping support for building modules externally.
BUG: Fix KWStyle test paths when building a module externally.
ENH: Add Cuberille Remote module.
COMP: Remove carriage returns from Cuberille remote.
COMP: Remove unused argument in ConditionVariableNoThreads.
DOC: Correct spelling of Continuous.
ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
COMP: Fix KernelTransform SetFixedParameters argument type.
STYLE: Use prefix increment operator in ImageBase.
COMP: Use ITK's pygccxml by correctly setting up the sys.path
Revert "COMP: Put vnl_export.h in the list of sources so it gets
installed."
BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
ENH: Marking wrapping CMake configuration variables as advanced.
STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
COMP: Non-virtual copy attribute members in LabelMap cannot have override.
COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
BUG: Improve KWStyle ExternalProject utilization.
ENH: Remove old KWStyle build script.
COMP: Address VariableLengthVector Doxygen rhs @param not found.
ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
ENH: Install Python bindings into site-packages.
ENH: Improve readability of Python site-packages path detection.
COMP: DiscreteGaussianDerivativeImageFilter unsigned expression warning.
BUG: ITKCommon publically depends on ITKDoubleConversion.
COMP: Improve scoping in CovariantVectorGeometryTest.
ENH: Improves names and export of module dependencies.
STYLE: Improve namespace bracket style in itkIsConvertible.
COMP: Set CMP0054 to new.
BUG: Remove unused wrapping files.
BUG: Do install install wrapping development files.
ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
BUG: Remove duplicate inclusion of wrapping submodules.
COMP: Do not use C++ style comments for Doxygen cond.
BUG: Fix detection of the gold linker.
BUG: Update Python package installation locations.
ENH: Bump CMakeLists.txt version to 4.8.2.
ENH: Change BUILD_EXAMPLES default to OFF.
BUG: Use 'from itk import ITKCommon' in module2module test.
COMP: Link to VTK Python when built with Kits support.
BUG: Install itk_minc2.h header.
COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
Michka Popoff (9):
ENH: Update to swig 3.0.7
ENH: Do not link against specific Python library on OS X
COMP: Fix wrapping warnings when building with ITK_WRAP_IMAGE_DIMS=2
COMP: Add missing wrapping for TransformBase
COMP: Use ITK's pygccxml by correctly setting up the sys.path
COMP: Disable incompatible modules when using Python 3 wrapping
COMP: Move MovingHistogramImageFilterBase wrapping to
ImageFilterBase module
COMP: Disable incompatible modules when using Python 3 wrapping
ENH: Allow operations on Indexes and Offsets in Python
Mikhail Isakov (1):
BUG: DiffusionTensor3DReconstruction segfault if no baseline image
Nick Tustison (5):
BUG: Set a default b-spline epsilon.
ENH: Adding testing for closed loop.
BUG: Updating B-spline classes with the same epsilon strategy.
PERF: Switch vnl_vectors for fixed arrays.
ENH: Point-set registration with time-varying B-spline.
Olivier Commowick (3):
BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen system
BUG: Correct under/overflows in vnl_math_hypot (taken from pythag from V3P)
BUG: Switch eigenvalues computation to double
Pablo Hernandez-Cerdan (2):
ENH: Help class for itkFlatStructuringElement with constructor from images.
COMP: Fix test errors and warnings in FlatStructuringElement.
Seun Odutola (1):
COMP: Fixed name clash with Apple header (check Macro), renamed
check to Check
Shawn Waldon (1):
COMP: Set target OS X version in environment for tools using compiler
Simon Alexander (1):
BUG: incorrect closest point computation
Tobias Wood (2):
BUG: LBFGSB was printing messages even with debug switched off.
BUG: Removed an unguarded print statement.
Vladimir S. FONOV (9):
BUG: Missing ITKIOMINC_EXPORT on __Private()
COMP: Changing the order of HDF5 library components
COMP: Splitting up IOMINC module into two parts: MINC and Transform
STYLE: updated comments to properly reference LIBMINC
ENH: Add script to merge upstream MINC as a subtree
MINC 2015-07-23 (c033d431)
COMP: Update MINC CMake code
MINC 2015-08-18 (6d7e3ba8)
MINC 2015-09-13 (95cd5374)
Xiaoxiao Liu (1):
DOC: update email address for xiaoxiao.
Zach Williamson (10):
BUG: Use correct libraries for ImageFusion tests
ENH: Consolidate Library Dependencies
COMP: Add a missing link to Review module
COMP: Use correct linking macro in DCMTK
BUG: Use correct libraries for TestKernel tests
COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
ENH: Use new linking system macros
PERF: Avoid searching private dependencies for include directories
COMP: Recover missing dependencies
ENH: use new linking macros in Filtering module
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Errors or omissions? Please fix them here:
https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
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