[ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1 is ready for testing!
Lowekamp, Bradley (NIH/NLM/LHC) [C]
blowekamp at mail.nih.gov
Tue Dec 1 09:48:27 EST 2015
If you compile on window in Debug mode, those tests are known to take a long time and time out.
The options are to increase the timeout ( CTEST_TEST_TIMEOUT ) and/or exclude the “RUNS_LONG” label from the tests run.
Here is a ctest script which does this:
https://open.cdash.org/viewNotes.php?buildid=4123585
HTH,
Brad
________________________________
From: Simon Alexander [skalexander at gmail.com]
Sent: Tuesday, December 01, 2015 9:19 AM
To: Matt McCormick; Dženan Zukić
Cc: insight-users at itk.org; Hyun Jae Kang; ITK
Subject: Re: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is ready for testing!
Hi Matt,
So I pulled origin/master and rebuilt last night. I have different failures now, all by timeout:
Total Test time (real) = 6363.39 sec
The following tests FAILED:
726 - itkFastMarchingImageFilterTest_wm_multipleSeeds_NoTopo (Timeout)
727 - itkFastMarchingImageFilterTest_wm_multipleSeeds_StrictTopo (Timeout)
728 - itkFastMarchingImageFilterTest_wm_multipleSeeds_NoHandlesTopo (Timeout)
2025 - itkTimeVaryingBSplineVelocityFieldPointSetRegistrationTest (Timeout)
Errors while running CTest
Any thoughts on what's going on there?
On Mon, 30 Nov 2015 at 20:42 Matt McCormick <matt.mccormick at kitware.com<mailto:matt.mccormick at kitware.com>> wrote:
Hi Simon,
I am returning from holiday, and also catching up on activity.
Hyun Jae has taken care of the KWStyle warnings and the data conversion warning:
http://review.source.kitware.com/#/c/20430/
http://review.source.kitware.com/#/c/20446/
And Dzenan and Bill have addressed Wiki examples errors:
https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
It is likely that the test failures on your build still remain. Did you want to take them on?
Thanks,
Matt
On Mon, Nov 30, 2015 at 2:00 PM, Dženan Zukić <dzenanz at gmail.com<mailto:dzenanz at gmail.com>> wrote:
Looking at the master branch is the right thing to do. I am not doing any active development regarding this right now.
On Mon, Nov 30, 2015 at 1:53 PM, Simon Alexander <skalexander at gmail.com<mailto:skalexander at gmail.com>> wrote:
Hi All,
I had hoped to be able to look at this over the weekend, but no such luck. Is there somewhere useful I can help with it now? Not sure what state we are in (or what branch).
On Wed, 25 Nov 2015 at 16:41 Dženan Zukić <dzenanz at gmail.com<mailto:dzenanz at gmail.com>> wrote:
It turns out that all the compile errors were occurring in WikiExamples. I solved all except one:
ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line 23, but it should be judging from the comment on that line.
For the rest, I created a pull request:
https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com<mailto:skalexander at gmail.com>> wrote:
Perfect. I'm under a deadline that is likely to eat the rest of the week but if that clears up I'll try and jump in earlier.
On Wed, 25 Nov 2015 at 16:06 Dženan Zukić <dzenanz at gmail.com<mailto:dzenanz at gmail.com>> wrote:
OK I will work on it for an hour or two now, and I will make a branch and push it to Gerrit so whoever wants can pick up from there and keep updating it.
On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com<mailto:skalexander at gmail.com>> wrote:
Makes sense. At this point I am unlikely to have time to look at this until Saturday, but have hopes for a few free hours there.
On Wed, 25 Nov 2015 at 15:58 Dženan Zukić <dzenanz at gmail.com<mailto:dzenanz at gmail.com>> wrote:
Building git master from Nov 23rd with examples and testing enabled I get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts in fixing them?
On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com<mailto:skalexander at gmail.com>> wrote:
Two of the three failures look like truncation issues (like https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
The other (https://open.cdash.org/testDetails.php?test=395264938&build=4117158) is less obvious.
If I have time this evening I'll try and have a look at these.
Is your standard test build in 32 bit ? That might explain the difference if there are some underlying type assumptions, but not obvious why 2015 would trigger but not 2013.
On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com<mailto:matt.mccormick at kitware.com>> wrote:
Ah, cool! Here:
https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
Could you please look into the test failures?
@Hyun Jae, could you please look into the KWStyle warnings?
Thanks,
Matt
On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <skalexander at gmail.com<mailto:skalexander at gmail.com>> wrote:
> Sorry, if I wasn't clear - I submitted two builds yesterday from SIMON-LAP,
> (actually 3 as I wasn't sure the config was right on the first one). VS2013
> was green, three failures on VS2015 (and 18 warnings). Looks like a
> truncation problem on the resuts.
>
> On Wed, 25 Nov 2015 at 10:51 Matt McCormick <matt.mccormick at kitware.com<mailto:matt.mccormick at kitware.com>>
> wrote:
>>
>> Hi Simon,
>>
>> Thanks for testing.
>>
>> We have a Visual Studio 2015 build on the dashboard that is green:
>>
>> https://open.cdash.org/buildSummary.php?buildid=4117955
>>
>> Are there any different flags? Could you please submit an Experimental
>> build?
>>
>> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit -C
>> Release
>>
>> from a fresh build tree.
>>
>> Thanks,
>> Matt
>>
>> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <skalexander at gmail.com<mailto:skalexander at gmail.com>>
>> wrote:
>> > Looks like a few problems with x64 build on visual studio 2015 - do you
>> > have
>> > a test machine in this configuration?
>> >
>> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <matt.mccormick at kitware.com<mailto:matt.mccormick at kitware.com>>
>> > wrote:
>> >>
>> >> On behalf of the Insight Toolkit community, we are proud to announce
>> >> that
>> >> ITK 4.9 release candidate 1 has been tagged and is available for
>> >> testing!
>> >>
>> >> Please take this opportunity to test the new features in the release
>> >> candidate.
>> >>
>> >>
>> >> To obtain the source code,
>> >>
>> >> git clone http://itk.org/ITK.git
>> >> cd ITK
>> >> git checkout -q --detach v4.9rc01
>> >>
>> >> For more details, please see the Git documentation [1].
>> >>
>> >>
>> >> A few selected highlights for this release:
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * New Remote modules: the Cuberille module for smooth generation of
>> >> meshes
>> >> from binary segmentation images, and the AnisotropicDiffusionLBR module
>> >> improved edge-preserving smoothing.
>> >> * Build your own ITK module outside the source tree, add continuous
>> >> integration testing on GitHub, and easily add Python wrapping for your
>> >> C++
>> >> algorithms.
>> >> * Python wrapping, including Python 3, builds faster with a more
>> >> standard
>> >> installation
>> >> * Improved performance of itk::Image::GetPixel and operations on
>> >> itk::VariableLengthVector’s
>> >> * Generate a FlatStructuringElement from an image
>> >> * Point-set registration with time-varying B-splines
>> >> * Module dependencies can now be specified as public / private /
>> >> compile /
>> >> test
>> >>
>> >>
>> >> Please test the release candidate and share your experiences on the
>> >> mailing list, issue tracker, and Gerrit Code Review. The new module
>> >> dependency specification mechanism may unearth missing dependencies for
>> >> projects that use ITK COMPONENTS with the CMake find_package command.
>> >>
>> >>
>> >> An Experimental build, which demonstrates how the test suite performs
>> >> on
>> >> your local build system, can be submitted to the dashboard [2] with:
>> >>
>> >> mkdir ../ITK-build
>> >> cd ../ITK-build
>> >> cmake ../ITK
>> >> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit
>> >>
>> >> Visual Studio builds must also add “-C Release” to the ctest command.
>> >>
>> >> Notify the mailing list if there are any unexpected failures. Testing
>> >> your own applications against the RC is also appreciated.
>> >>
>> >>
>> >> Congratulations and well done to the 35 contributors to this release.
>> >> We
>> >> would especially like to recognize the new contributors: Mikhail
>> >> Isakov,
>> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>> >> Odutola,
>> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson,
>> >> Luc
>> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>> >>
>> >>
>> >> The final release is scheduled for mid-December.
>> >>
>> >>
>> >> [1] http://www.itk.org/Wiki/ITK/Git
>> >>
>> >> [2] http://open.cdash.org/index.php?project=Insight
>> >>
>> >>
>> >>
>> >> New Features
>> >> ---------------------
>> >>
>> >> Wrapping improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Python 3 supported
>> >> * Wrapping builds much faster due to CastXML binaries
>> >> * LandmarkBasedTransformInitializer now wrapped
>> >> * NumPy bridge with VisualStudio
>> >> * Wrapping for the MinimalPathExtraction module
>> >> * Wrapping is now installed into Python’s site-packages directory in
>> >> the
>> >> “itk” package
>> >> * Wrapping package size is decreased
>> >> * Better package portability on Mac OSX
>> >>
>> >>
>> >> New Remote Modules
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Cuberille
>> >> * Insight Journal Article: http://hdl.handle.net/10380/3186
>> >> * AnisotropicDiffusionLBR
>> >> * Insight Journal Article: http://hdl.handle.net/10380/3505
>> >> * Web browser reproducibility:
>> >> http://www.kitware.com/blog/home/post/942
>> >>
>> >>
>> >> Core Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * External Modules can now be developed outside of the ITK source tree
>> >> and
>> >> on GitHub
>> >> * Details: http://www.kitware.com/blog/home/post/997
>> >> * New utilities in itk::Math:
>> >> * AlmostEquals
>> >> * NotAlmostEquals
>> >> * ExactlyEquals
>> >> * NotExactlyEquals
>> >> * New itk::NumericTraits
>> >> * IsInteger
>> >> * IsSigned
>> >> * Improved C++11 support
>> >> * New ITK_DELETE_FUNCTION macro for “=delete”
>> >> * New ITK_NOEXCEPT macro for the “noexcept” keyword
>> >> * Improved capabilities of itk::ResourceProbe and
>> >> itk::ResourceProbesCollectorBase
>> >> * Improve numerical stability in VNL eigen system estimation
>> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>> >>
>> >>
>> >> Filtering Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Generate a FlatStructuringElement from an image
>> >> * WarpImageFilter support VectorImage’s
>> >> * ConvertLabelMap supports different LabelMap types
>> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>> >> module
>> >>
>> >>
>> >> Registration Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Point-set registration with time-varying B-splines
>> >>
>> >>
>> >> Build Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Module dependencies can now be specified as public / private /
>> >> compile /
>> >> test
>> >> * BUILD_EXAMPLES CMake option is now OFF by default
>> >> * Option to export all library symbols on Windows:
>> >> * Details: http://www.kitware.com/blog/home/post/939
>> >> * Expat third party library is now name mangled
>> >> * Many more modules can be built as shared libraries
>> >> * KWStyle is automatically built and configured when tests are built
>> >>
>> >>
>> >> Performance Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
>> >> metaprogramming
>> >> * itk::mpl::{TrueType,FalseType}
>> >> * itk::mpl::{If,Not,And,Or,Xor}
>> >> * itk::mpl::EnableIf
>> >> * itk::mpl::IsBaseOf
>> >> * itk::mpl::IsConvertible
>> >> * itk::mpl::IsNumber
>> >> * itk::mpl::IsSame
>> >> * itk::mpl::PromoteType
>> >> * Image::GetPixel performance improvements
>> >> * Many itk::VariableLengthVector performance improvements
>> >> * AdaptiveHistogramEqualization uses a moving histogram
>> >> * WarpImageFilter performance improvements
>> >>
>> >>
>> >> Documentation Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>> >> * ITK Software Guide improvements
>> >> * How to use Python wrapping
>> >> * How to create an ITK module
>> >> * Improvements to segmentation examples
>> >> * Expanded Canny edge detection example
>> >> * Expanded tree container example
>> >>
>> >>
>> >> Third Party Library Updates
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * FFTW updated to latest upstream
>> >> * Build with recent OpenCV 2 and 3
>> >> * Build with the latest VTK
>> >> * PNG update to the latest upstream
>> >> * GDCM updated to the latest upstream
>> >> * KWSys updated to the latest upstream
>> >> * MINC updated to the latest upstream
>> >> * SWIG updated to the latest upstream
>> >> * Third party PNG and MINC are now Git subtrees
>> >>
>> >>
>> >> Style improvements -- ITK gets more stylish with every release!
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>> >>
>> >>
>> >> Improved code coverage -- we are at 84.9%!
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >>
>> >> * *Lots* of important bug fixes
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >>
>> >> * And much more! See details in the log below.
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >>
>> >>
>> >> Changes from v4.8.0..v4.9rc01
>> >> --------------------------------------------
>> >>
>> >>
>> >> Abhishek Tiwari (1):
>> >> BUG: "tmpImageIndex" not initialized to 0.
>> >>
>> >> Adam Snyder (1):
>> >> PERF: Reworked MMI Threading using a per-thread buffer
>> >>
>> >> Alexander Leinoff (6):
>> >> ENH: Adds IsInteger and IsSigned to NumericTraits.
>> >> COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>> >> ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>> >> itkMath.h
>> >> COMP: Removes floating-point equality checks
>> >> ENH: COMP: Adds support for complex values to Math::AlmostEquals
>> >> ENH: Updates fftw dependency
>> >>
>> >> Arnaud Gelas (5):
>> >> COMP: fix warning (unused local typedef)
>> >> COMP: simplify ITKVideoBridgeOpenCV dependency
>> >> DOC: add doxgen documentation for
>> >> BinaryImageToLevelSetImageAdaptor
>> >> ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
>> >> COMP: fix compilation error with OpenCV2 and OpenCV3
>> >>
>> >> Betsy McPhail (1):
>> >> BUG: Improve buffer alignment in OctreeNode .
>> >>
>> >> Bill Hoffman (2):
>> >> ENH: Use new CMake Windows export symbol dll feature.
>> >> COMP: Put vnl_export.h in the list of sources so it gets
>> >> installed.
>> >>
>> >> Bill Lorensen (4):
>> >> COMP: VTkGlue linker errors
>> >> BUG: Inappropriate use of AlmostEquals
>> >> ENH: Bump tag for wiki examples
>> >> ENH: Better layout strategy
>> >>
>> >> Brad King (3):
>> >> ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>> >> ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>> >> ENH: Update CMake Policy settings in Testing/TestExternal project
>> >>
>> >> Bradley Lowekamp (31):
>> >> BUG: Avoid null deference in PrintSelf with default construction
>> >> ENH: Enable base classes for templates of landmark initializer
>> >> STYLE: Use "Swap" for ITK member name
>> >> BUG: Demonstrate Eigen analysis failure
>> >> BUG: Fix computation of Eigen analysis
>> >> ENH: Update DiscreteHessianGaussian Test baseline
>> >> ENH: Correctly demonstrate float point Eigen failure
>> >> ENH: compile vnl_math_hypot, and use at least double
>> >> ENH: Adding initial update script from used libpng version.
>> >> ENH: removing non-subtree files for itkpng
>> >> ENH: Ported ITK changes for building to subtree merged code
>> >> ENH: Update libpng update script for v1.6.9
>> >> BUG: Use ParameterValueType for computation of landmark affine
>> >> ENH: Wrap LandmarkBasedTransformInitializer
>> >> BUG: Avoid potential exception in itk::Object::UnRegister
>> >> ENH: Update itkpng zlib, configuration, and rename
>> >> ENH: Update itkpng name mangling
>> >> BUG: Use const pointer in Set method for constant ReferenceImage
>> >> ivar
>> >> BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
>> >> BUG: Demonstrate side effect on registration due to BSplineScatter
>> >> change
>> >> ENH: Move MovingHistogramImageFilter base classes to
>> >> ImageFilterBase
>> >> BUG: Avoid potential exception in itk::Object::UnRegister
>> >> BUG: Avoid null deference in PrintSelf with default construction
>> >> BUG: Use const pointer in Set method for constant ReferenceImage
>> >> ivar
>> >> ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram
>> >> base
>> >> COMP: address sign unsigned comparison warning
>> >> COMP: Address signed unsigned comparison warning
>> >> COMP: Address unused member variable and methods in anonymous ns
>> >> BUG: Fix segfault when with empty IsolatedWatershed Threshold
>> >> range
>> >> BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>> >> BUG: Reduce number of targets with MSVC
>> >>
>> >> Davis Vigneault (7):
>> >> DOC: Minor improvements to segmentation examples.
>> >> DOC: Expanded Canny Edge Detection Example
>> >> DOC: Expanded TreeContainer Example
>> >> COMP: Warnings in itkVTKImageExport when compiling with c++11
>> >> COMP: Warnings in FFTW Classes when compiling with c++11
>> >> COMP: Update Git Tag for Subdivision Module
>> >> COMP: Warnings in FFTW Classes when compiling with c++11
>> >>
>> >> Dženan Zukić (1):
>> >> STYLE: better formatting of the "usage" message
>> >>
>> >> Eugene Prilepin (1):
>> >> BUG: Fix a template name formation in python wrappings
>> >>
>> >> Floris Berendsen (1):
>> >> STYLE: Improve naming conventions in comments.
>> >>
>> >> Hans Johnson (29):
>> >> STYLE: Instrument for FixedParameters typedef
>> >> BUG: Demonstrate DisplacementTransformFailure
>> >> BUG: FixedParameters should be double precision
>> >> STYLE: Minor code style issues for MGHIO
>> >> COMP: Update to version for WikiExamples
>> >> ENH: Update Sphinx for ITK 4.8.0
>> >> ENH: Update MGHIO to be shared lib
>> >> ENH: Provide consistent floating point comparisons
>> >> BUG: Fix MGHIO to fix write failures
>> >> PERF: Remove floating point as sentinal value
>> >> COMP: Const correctness needs to be maintained
>> >> BUG: Preserve backwards compatibility
>> >> DOC: Provide consistent naming in comments
>> >> ENH: Conversion between transform type tolerance
>> >> STYLE: Prefer initialization to assignment
>> >> ENH: Missing ITK_OVERRIDE
>> >> COMP: Need to propagate ITKGDCM
>> >> COMP: Need to propagate ITKGDCM
>> >> COMP: Add missing ITK_OVERRIDE
>> >> STYLE: Minor code style issues for MGHIO
>> >> COMP: Update to version for WikiExamples
>> >> ENH: Update Sphinx for ITK 4.8.0
>> >> ENH: Update MGHIO to be shared lib
>> >> BUG: Fix MGHIO to fix write failures
>> >> ENH: C++11 allows for rigorous =delete
>> >> COMP: Remove unnecessary failing assert test
>> >> ENH: Ignore internal files for the Clion editor
>> >> COMP: Fix VNL compilation for wider C++11 support
>> >> BUG: In configuration test need to mirror code
>> >>
>> >> Hyun Jae Kang (27):
>> >> BUG: Remove std::cout calls from class
>> >> BUG: Avoid an unexpected output of static_cast
>> >> BUG: Update python example codes for ImageRegistration
>> >> BUG: Retrieve the missed wrap file
>> >> BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> >> header.
>> >> BUG: Fix HDF5 CMake configuration with VS2015
>> >> BUG: Fix a compilation issue on ITK4 with FFTW and shared
>> >> libraries
>> >> BUG: Fixed older XCode linking error
>> >> ENH: Use CastXML binaries when building with x86_64 Mac OS X
>> >> BUG: Remove std::cout calls from class
>> >> BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> >> header.
>> >> BUG: Fixed older XCode linking error
>> >> ENH: Add automatic KWStyle build and configuration setup
>> >> COMP: KWStyle shadow, format-nonliteral and autological-compare
>> >> warning.
>> >> COMP: Fixed the warning messages from itkGPU Module
>> >> COMP: Fixed a warning message of unused-private-field
>> >> COMP: Apply latest version of KWStyle
>> >> COMP: Update KWStyle to fix its additional warning messages
>> >> COMP: Update KWStyle to fix its additional warning messages
>> >> COMP: Fix data-conversion warning messages on Windows
>> >> ENH: Update itkResourceProbe to calculate statistical data
>> >> COMP: Fix data-conversion warning messages on VS14
>> >> COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
>> >> ENH: Update the Report() function of
>> >> itkResourceProbesCollectorBase
>> >> COMP: Fix data-conversion warning message on itkResourceProbe
>> >> COMP: Fix additional warning messages of KWStyle
>> >> COMP: Fix data-conversion warning messages
>> >>
>> >> Jon Haitz Legarreta (6):
>> >> ENH: Add test for itkStatisticsUniqueLabelMapFilter
>> >> BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
>> >> BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
>> >> BUG: Test for StatisticsUniqueLabelMapFilter stability
>> >> ENH: Add test for itkParametricStpaceToImageSpaceFilter
>> >> ENH: Improve code coverage for
>> >> itkParametricSpaceToImageSpaceMeshFilter
>> >>
>> >> Julien Michel (1):
>> >> ENH: Support of VectorImage as template parameters for
>> >> WarpImageFilter
>> >>
>> >> Junjie Bai (2):
>> >> BUG: ConvertLabelMap with different LabelMapTypes
>> >> BUG: LabelObject CopyAttribute support different LabelObject type
>> >>
>> >> KWSys Robot (4):
>> >> KWSys 2015-07-10 (c9336bcf)
>> >> KWSys 2015-07-30 (f63febb7)
>> >> KWSys 2015-08-24 (cdaf522c)
>> >> KWSys 2015-08-28 (dc3fdd7f)
>> >>
>> >> LIBPNG Upstream (2):
>> >> PNG 2009-04-06 (e68f5a36)
>> >> PNG 2014-02-05 (3e753eb8)
>> >>
>> >> Laurentiu Nicola (2):
>> >> PERF: Avoid temporary smartptr in ProcessObject::GetInput
>> >> PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>> >>
>> >> Luc Hermitte (8):
>> >> PERF: itk::Image::GetPixel() performance improvment.
>> >> PERF: Performance enhancements on VariableLengthVectors 1/...
>> >> ENH: Dependencies on itkVariableLengthVector.h reduced
>> >> BUG: Error in VariableLengthVector Unit Tests
>> >> PERF: Performance enhancements on VLV 2/...
>> >> PERF: Performances enhancements on VLV 3/...
>> >> COMP: Fix signed/unsigned warnings
>> >> BUG: std::copy/fill on empty VLV
>> >>
>> >> Lucas Gandel (4):
>> >> ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>> >> BUG: Fixing ImageToPathFilter wrapping call from Review Module
>> >> STYLE: Fix KWStyle dashboard errors
>> >> BUG: Fix external module BUILD_SHARED_LIBS status
>> >>
>> >> Mathieu Malaterre (1):
>> >> BUG: Name mangle the included expat third party library.
>> >>
>> >> Matthew McCormick (94):
>> >> ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
>> >> ENH: Add AnisotropicDiffusionLBR Remote Module.
>> >> ENH: Bump ITK version to 4.9.0.
>> >> BUG: Remove std::cout calls from classes.
>> >> COMP: Remove unused argument in ConditionVariableNoThreads.
>> >> BUG: Implement UpdateLargestPossibleRegion for
>> >> ImageToVTKImageFilter.
>> >> COMP: Add link interface specification for wrapping
>> >> target_link_libraries.
>> >> STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>> >> COMP: Fix MINCTransformIO factory registration.
>> >> COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>> >> COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
>> >> BUG: Initialize mutex for 32 bit AtomicInt.
>> >> ENH: Use CastXML binaries when building with x86_64 Linux.
>> >> STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>> >> COMP: Disable the gold linker for static builds on Ubuntu 14.04.
>> >> ENH: Use Windows binaries for CastXML.
>> >> ENH: Add better scoping in igenerator.py.
>> >> BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>> >> BUG: LevelSetsv4 used signed char instead of char.
>> >> ENH: Add better scoping to idx.py.
>> >> COMP: Define newSize and oldSize in VariableLengthVector.
>> >> STYLE: Use prefix increment operator in ImageBase.
>> >> DOC: Correct spelling of Continuous.
>> >> ENH: Add more progress information to IterativeClosestPoint2.
>> >> BUG: Build BridgeNumPy with Visual Studio.
>> >> ENH: Add ITKModuleExternal.cmake
>> >> COMP: Wrap Image< bool, D > for FlatStructuringElement.
>> >> BUG: Use CastXML binary built in Release.
>> >> BUG: ContinuousIndex should not be templated over TCoordRep.
>> >> COMP: Set CMP0054 to new.
>> >> COMP: Address line length too long for Software Guide.
>> >> COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>> >> BUG: Support Python 3 wrapping module initialization.
>> >> BUG: Update itkTemplate.py for Python 3.
>> >> BUG: Update itkExtras.py for Python 3.
>> >> BUG: Prevent Python callback addition recursion.
>> >> BUG: Fix test scripts for Python 3.
>> >> BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >> ENH: Allow projects to build against an external module.
>> >> ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>> >> ENH: Rename _cable_ to _wrappers_.
>> >> BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >> BUG: Define ITK_WRAPPING_PARSER when wrapping.
>> >> COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >> ENH: Bump CMakeLists.txt version to 4.8.1.
>> >> BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>> >> ENH: Bump CastXML version to 2015-30-29.
>> >> ENH: Bump LLVM / Clang to 3.7.0.
>> >> COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>> >> COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
>> >> COMP: Use itkSimpleNewMacro in
>> >> ThreadedIteratorRangePartitionerTest.
>> >> ENH: Add wrapping support for building modules externally.
>> >> BUG: Fix KWStyle test paths when building a module externally.
>> >> ENH: Add Cuberille Remote module.
>> >> COMP: Remove carriage returns from Cuberille remote.
>> >> COMP: Remove unused argument in ConditionVariableNoThreads.
>> >> DOC: Correct spelling of Continuous.
>> >> ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>> >> COMP: Fix KernelTransform SetFixedParameters argument type.
>> >> STYLE: Use prefix increment operator in ImageBase.
>> >> COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >> Revert "COMP: Put vnl_export.h in the list of sources so it gets
>> >> installed."
>> >> BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
>> >> ENH: Marking wrapping CMake configuration variables as advanced.
>> >> STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>> >> COMP: Non-virtual copy attribute members in LabelMap cannot have
>> >> override.
>> >> COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
>> >> COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>> >> ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>> >> BUG: Improve KWStyle ExternalProject utilization.
>> >> ENH: Remove old KWStyle build script.
>> >> COMP: Address VariableLengthVector Doxygen rhs @param not found.
>> >> ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
>> >> ENH: Install Python bindings into site-packages.
>> >> ENH: Improve readability of Python site-packages path detection.
>> >> COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
>> >> warning.
>> >> BUG: ITKCommon publically depends on ITKDoubleConversion.
>> >> COMP: Improve scoping in CovariantVectorGeometryTest.
>> >> ENH: Improves names and export of module dependencies.
>> >> STYLE: Improve namespace bracket style in itkIsConvertible.
>> >> COMP: Set CMP0054 to new.
>> >> BUG: Remove unused wrapping files.
>> >> BUG: Do install install wrapping development files.
>> >> ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>> >> BUG: Remove duplicate inclusion of wrapping submodules.
>> >> COMP: Do not use C++ style comments for Doxygen cond.
>> >> BUG: Fix detection of the gold linker.
>> >> BUG: Update Python package installation locations.
>> >> ENH: Bump CMakeLists.txt version to 4.8.2.
>> >> ENH: Change BUILD_EXAMPLES default to OFF.
>> >> BUG: Use 'from itk import ITKCommon' in module2module test.
>> >> COMP: Link to VTK Python when built with Kits support.
>> >> BUG: Install itk_minc2.h header.
>> >> COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>> >>
>> >> Michka Popoff (9):
>> >> ENH: Update to swig 3.0.7
>> >> ENH: Do not link against specific Python library on OS X
>> >> COMP: Fix wrapping warnings when building with
>> >> ITK_WRAP_IMAGE_DIMS=2
>> >> COMP: Add missing wrapping for TransformBase
>> >> COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >> COMP: Disable incompatible modules when using Python 3 wrapping
>> >> COMP: Move MovingHistogramImageFilterBase wrapping to
>> >> ImageFilterBase
>> >> module
>> >> COMP: Disable incompatible modules when using Python 3 wrapping
>> >> ENH: Allow operations on Indexes and Offsets in Python
>> >>
>> >> Mikhail Isakov (1):
>> >> BUG: DiffusionTensor3DReconstruction segfault if no baseline image
>> >>
>> >> Nick Tustison (5):
>> >> BUG: Set a default b-spline epsilon.
>> >> ENH: Adding testing for closed loop.
>> >> BUG: Updating B-spline classes with the same epsilon strategy.
>> >> PERF: Switch vnl_vectors for fixed arrays.
>> >> ENH: Point-set registration with time-varying B-spline.
>> >>
>> >> Olivier Commowick (3):
>> >> BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
>> >> system
>> >> BUG: Correct under/overflows in vnl_math_hypot (taken from pythag
>> >> from V3P)
>> >> BUG: Switch eigenvalues computation to double
>> >>
>> >> Pablo Hernandez-Cerdan (2):
>> >> ENH: Help class for itkFlatStructuringElement with constructor
>> >> from
>> >> images.
>> >> COMP: Fix test errors and warnings in FlatStructuringElement.
>> >>
>> >> Seun Odutola (1):
>> >> COMP: Fixed name clash with Apple header (check Macro), renamed
>> >> check
>> >> to Check
>> >>
>> >> Shawn Waldon (1):
>> >> COMP: Set target OS X version in environment for tools using
>> >> compiler
>> >>
>> >> Simon Alexander (1):
>> >> BUG: incorrect closest point computation
>> >>
>> >> Tobias Wood (2):
>> >> BUG: LBFGSB was printing messages even with debug switched off.
>> >> BUG: Removed an unguarded print statement.
>> >>
>> >> Vladimir S. FONOV (9):
>> >> BUG: Missing ITKIOMINC_EXPORT on __Private()
>> >> COMP: Changing the order of HDF5 library components
>> >> COMP: Splitting up IOMINC module into two parts: MINC and
>> >> Transform
>> >> STYLE: updated comments to properly reference LIBMINC
>> >> ENH: Add script to merge upstream MINC as a subtree
>> >> MINC 2015-07-23 (c033d431)
>> >> COMP: Update MINC CMake code
>> >> MINC 2015-08-18 (6d7e3ba8)
>> >> MINC 2015-09-13 (95cd5374)
>> >>
>> >> Xiaoxiao Liu (1):
>> >> DOC: update email address for xiaoxiao.
>> >>
>> >> Zach Williamson (10):
>> >> BUG: Use correct libraries for ImageFusion tests
>> >> ENH: Consolidate Library Dependencies
>> >> COMP: Add a missing link to Review module
>> >> COMP: Use correct linking macro in DCMTK
>> >> BUG: Use correct libraries for TestKernel tests
>> >> COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>> >> ENH: Use new linking system macros
>> >> PERF: Avoid searching private dependencies for include directories
>> >> COMP: Recover missing dependencies
>> >> ENH: use new linking macros in Filtering module
>> >>
>> >>
>> >>
>> >> -----------------------------------------------------
>> >> Errors or omissions? Please fix them here:
>> >>
>> >>
>> >>
>> >> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>> >> _____________________________________
>> >> Powered by www.kitware.com<http://www.kitware.com>
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Kitware offers ITK Training Courses, for more information visit:
>> >> http://www.kitware.com/products/protraining.php
>> >>
>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >>
>> >> Follow this link to subscribe/unsubscribe:
>> >> http://public.kitware.com/mailman/listinfo/insight-users
_______________________________________________
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Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
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