[ITK-users] Fwd: using simpleITK with anaconda python distribution

[Vishwa]

It finally worked with the conda install --use-local simpleitk command.

Thanks everyone

Regards,
vishwa

On Sat, Sep 13, 2014 at 2:36 PM, Vishwa <vishwanath.somashekar at gmail.com>
wrote:

> I didn't remove it. How exactly do I do that? Also, from which folder
> should i run the conda install --use-local simpleitk command.
>
> I changed to conda recipes folder and issued the command. I got an error
>
>  conda install --use-local simpleitk
>
> Fetching package metadata: ...Error: Could not find URL:
> file:///Users/dagarshali/anaconda/conda-bld/osx-64/
>
> On Sat, Sep 13, 2014 at 12:00 PM, Bradley Lowekamp <blowekamp at mail.nih.gov
> > wrote:
>
>> Did you remove the installed SimpleITK from the setup.py script before
>> running "const install --use-local simpleitk". I am guessing conda didn't
>> install simpleitk correctly because of the old version manually installed.
>>
>> Brad
>>
>> On Sep 12, 2014, at 10:52 PM, Vishwa <vishwanath.somashekar at gmail.com>
>> wrote:
>>
>> Hi Brad,
>> Thanks for all the help. I tried the conda install --use-local simpleitk
>> from the conda-recipes folder. It didn't seem to matter..
>>
>> Here is the thing that I noticed..
>>
>> If I add the path of the lib (~/anaconda/lib) to DYLD_LIBRARY_PATH, then
>> i can get it to work from the python that's invoked from the terminal.
>> However, when I try the same thing from the notebook or from spyder, I get
>> the following error.
>>
>> >>import SimpleITK as sitk
>> Traceback (most recent call last):
>>   File "<stdin>", line 1, in <module>
>>   File
>> "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/__init__.py",
>> line 1, in <module>
>>     from .SimpleITK import *
>>   File
>> "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py",
>> line 28, in <module>
>>     _SimpleITK = swig_import_helper()
>>   File
>> "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py",
>> line 24, in swig_import_helper
>>     _mod = imp.load_module('_SimpleITK', fp, pathname, description)
>> ImportError:
>> dlopen(/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so,
>> 2): Library not loaded: libpng15.15.dylib
>>   Referenced from:
>> /Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so
>>   Reason: image not found
>>
>> Any suggestions?
>>
>>
>> On Fri, Sep 12, 2014 at 6:59 PM, Vishwa <vishwanath.somashekar at gmail.com>
>> wrote:
>>
>>> Hi Brad,
>>> Thanks for all the help. I tried the conda install --use-local simpleitk
>>> from the conda-recipes folder. It didn't seem to matter..
>>>
>>> Here is the thing that I noticed..
>>>
>>> If I add the path of the lib (~/anaconda/lib) to DYLD_LIBRARY_PATH, then
>>> i can get it to work from the python that's invoked from the terminal.
>>> However, when I try the same thing from the notebook or from spyder, I get
>>> the following error.
>>>
>>> >>import SimpleITK as sitk
>>> Traceback (most recent call last):
>>>   File "<stdin>", line 1, in <module>
>>>   File
>>> "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/__init__.py",
>>> line 1, in <module>
>>>     from .SimpleITK import *
>>>   File
>>> "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py",
>>> line 28, in <module>
>>>     _SimpleITK = swig_import_helper()
>>>   File
>>> "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py",
>>> line 24, in swig_import_helper
>>>     _mod = imp.load_module('_SimpleITK', fp, pathname, description)
>>> ImportError:
>>> dlopen(/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so,
>>> 2): Library not loaded: libpng15.15.dylib
>>>   Referenced from:
>>> /Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so
>>>   Reason: image not found
>>>
>>> Any suggestions?
>>>
>>
>>
>>
>>
>
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