[ITK-users] [ITK] [ANNOUNCE] ITK 4.7 Release Candidate 1 has been tagged!
Bradley Lowekamp
blowekamp at mail.nih.gov
Tue Dec 9 09:29:17 EST 2014
Matt,
I don't think you sufficiently highlighted that now all ITK examples from the Software Guide, Wiki Examples, and SphinxExamples are indexed and crossed linked in Doxygen[1]. So now when you go to your favorite filter or other object, say the ResampleImageFilter[2], there is a large selection of examples in the examples sections. This should make it much easier to fine sample code on how to use an ITK class!
Brad
[1] http://itk.org/Insight/Doxygen/html/examples.html
[2] http://www.itk.org/Doxygen/html/classitk_1_1ResampleImageFilter.html
On Dec 8, 2014, at 11:44 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
> On behalf of the Insight Toolkit community, we are proud to announce
> that ITK 4.7.0 release candidate 1 has been tagged and is available
> for testing!
>
>
> To obtain the source code,
>
> git clone http://itk.org/ITK.git
> cd ITK
> git checkout -q --detach v4.7rc01
>
> For more details, please see the Git documentation [1].
>
>
> Please test the release candidate and share your experiences on the
> mailing list, issue tracker, and Gerrit Code Review. Please help
> identify issues submitting an Experimental build to the dashboard [2]
> with:
>
> ctest -M Experimental -T Configure -T Build -T Test -T Submit
>
> and notifying the mailing list. Testing your own applications against
> the RC is also appreciated.
>
>
> Congratulations and well done to everyone that has contributed to this
> release. Release candidates are tagged every week. The final release
> is scheduled for December 18th.
>
>
> [1] http://www.itk.org/Wiki/ITK/Git
>
> [2] http://open.cdash.org/index.php?project=Insight
>
>
>
> New Features
> ------------------
> * Documentation Improvements
> - Update Software Guide registration examples to ITKv4 framework
> - Wiki and Sphinx examples are indexed in Doxygen
> - Clean Software Guide dashboard build
>
> * Filtering Improvements
> - New Laplacian deformation filter’s for QuadEdgeMesh’s
> - IJ article: http://hdl.handle.net/10380/3410
> - FFTComplexToComplexImageFilter out of Review, Vnl, FFTW implementations
>
> * ImageIO improvements
> - PNG sCAL unit support
> - TIFF IO performance greatly improved
> - TIFF tags read into Image MetaDataDictionary
> - MetaIO updated
> - Better support for system GDCM
>
> * Infrastructure improvements
> - New method to erase a MetaDataDictionary entry
> - New global method to set physical space tolerance
> - New, experimental thread pool support
> - NumericTraits::Zero and ::One are deprecated in favor of
> ::ZeroValue() and ::OneValue()
>
> * New Remote Modules
> - Higher Order Accurate Gradient
> - http://hdl.handle.net/10380/3231
> - IO Transform DCMTK
> - http://hdl.handle.net/10380/3468
>
> * Registration improvements
> - LandmarkBasedTransformInitializer supports BSplineTransform
> - Transverse inverse consistency increased
> - Automatic initialization of the transform center for multi-stage
> registrations
> - Sparse point B-spline field estimate
>
> * Performance improvements
> - Faster recursive Gaussian on VectorImage
> - Mutual information faster, lower memory usage
>
> * Wrapping improvements
> - Wrapping now builds without type warnings
> - pygccxml bumped to 1.6.2
> - Latest GCCXML
> - CMake wrapping infrastructure cleanup
> - Build with Ninja CMake generator
> - New GetTypes() and GetTypesAsList() methods
> - ITK_WRAP_PYTHON is exposed in ITKConfig.cmake
>
> * Many style improvements -- ITK gets more stylish with every release!
>
> * Improved code coverage -- we are over 85%!
>
> * *Lots* of important bug fixes
>
> * And much more! See details in the log below.
>
>
> List of changes since v4.5.0
> --------------------------------------
>
> Alexander Schmidt-Richberg (1):
> ENH: Updated Remote Module VariationalRegistration to new git tag
>
> Ali Ghayoor (10):
> ENH: Make ITKv4 compatible with ITKSoftwareGuide
> ENH: Add GetCurrentStepLength to RegularStepGradDescentOptv4
> ENH: Convert three ImageRegistration Examples to ITKv4
> ENH: Add multi-Res and multistage registration Examples to ITKv4
> ENH: Convert DeformableReg examples to ITKv4 reg framework
> BUG: Expand a test to reflect multi-metric registration bug
> BUG: Fix multi metric point sampling bug in ImageRegistrationMethodv4
> ENH: Add direct initialization to SyN registration
> ENH: Direct initialization of SyN by restoring the state
> ENH: LandmarkBasedTransformInitializer supports BSplineTransformType
>
> Arnaud Gelas (15):
> COMP: use find_package(VTK COMPONENTS) for LevelSetsv4Visualization
> ENH: Importing Laplacian Deformation for QuadEdgeMesh
> DOC: Add more explanation about SmoothingQuadEdgeMeshFilter's usage
> ENH: SmoothingQuadEdgeMeshFilter::SetCoefficientMethod calls Modified()
> ENH: Add progress report in itk::SmoothingQuadEdgeMeshFilter
> BUG: fix gdcm version in GDCMImageIO.
> COMP: missing cast when calling gdcm::DataElement::SetByteValue
> COMP: missing cast when calling gdcm::DataElement::SetByteValue
> ENH: increase LaplacianDeformation code coverage
> STYLE: use typedef rather than inheritance
> BUG: GDCMImageIO was not working properly when m_KeepOriginalUID is false
> BUG: split include directories into appropriate cmake variables HDF5
> BUG: missing gdcm libraries when using system GDCM
> DOC: fix doxygen documentaiton for
> itk::LaplacianDeformationQuadEdgeMeshFilter
> ENH: Add one method to erase a tag into MetaDataDictionary
>
> Bill Lorensen (5):
> ENH: Specify required VTK modules
> COMP: Wiki examples require additional vtk modules
> ENH: Modify WikiExamples remote config
> COMP: Bad test signature
> COMP: Update tag for wiki examples
>
> Brad King (6):
> COMP: Fix vxl_config_macros usage of CMake check macros
> ENH: Use if(DEFINED) to simplify conditions
> COMP: Fix vxl_config_macros checks broken by refactoring
> COMP: Fix one more vxl_config_macros check broken by refactoring
> BUG: Fix itk_module_config for repeated calls
> BUG: Fix itk_module_config for repeated calls
>
> Bradley Lowekamp (52):
> ENH: Adding License file from upstream MetaIO
> ENH: Adding script to update MetaIO from upstream
> ENH: Remove ITK MetaIO to prepare for upstream import
> PERF: Remove dynamically allocated temporary in evaluate method
> COMP: Fix variable type for Set/Get macros
> BUG: Implement ITK Style Singleton design pattern
> ENH: Add no throw exception specification for UnRegister methods
> COMP: Must specify order as "noexcept override"
> BUG: Add GetInverse for IdentityTransform
> ENH: Adding SetIdentity method to base DisplacementField class
> BUG: Remove unused redefinition of NULL
> BUG: Don't print to std::cout in PrintSelf
> ENH: Prefer the PrintSelfObjectMacro for printing nested objects
> BUG: Use METER of sCAL scale unit
> BUG: Use PNG_SCALE_METER for PNG sCAL unit
> BUG: Use METER of sCAL scale unit
> BUG: Use PNG_SCALE_METER for PNG sCAL unit
> COMP: Fix signed to unsigned int comparison
> BUG: Fix overflows computing size of read tiff image
> ENH: Extract TiffReaderInternal to separate file
> ENH: Refactor ReadTwoSamplePerPixelImage into template function
> ENH: Refactor GenericReadImage into template function
> BUG: Remove Zeiss 2-channel support code in TIFFImageIO ( and LSMImageIO )
> ENH: Refactor method to convert RGBA image to output buffer
> ENH: Refactor duplicated code to read a page
> BUG: Fix right oriented tiff images
> BUG: Remove dead separated plannar code, add test
> STYLE: Fix minor kwstyle defects in test and test results
> BUG: Use array delete operator for array new allocations
> ENH: add arbitrary TIFF TAGs to meta-data dictionary
> ENH: Reduce code duplicate in TIFFImageIO::ReadCurrentPage
> BUG: Address Coverity warning about null pointer dereferences
> ENH: Remove support for TIFF tile as 3D and dead code
> ENH: RGBA read images should stay unchanged.
> BUG: Override method to MakeOutput by name
> ENH: Refactor per pixel conversion function to per scan-line method
> PERF: Refactor color table lookup
> BUG: Adding missing parentheses around boolean expression
> ENH: adding TIFFImageIO test for RGB palette images
> PERF: Improve recursive Gaussian perfromance with VectorImages
> ENH: Query libtiff to determine compression support
> BUG: Support TIFF tiled image with TIFFReadRGBAImage
> BUG: Use SizeValueType for length of scanline
> PERF: Store causal results directly in output buffers
> COMP: Add explicit conversion to const char
> COMP: Explicitly add override to GetNameOfClass method
> COMP: Address internal segmentation fault with Intel compiler
> ENH: Adding method to set global physical space tolerance
> COMP: Explicitly add override to GetNameOfClass method
> BUG: Add new TypeMacro for non-overloaded classes
> BUG: Fix obscure race condition on access thread pool initialization
> BUG: Updating FDFImageIO remote module
>
> Christopher Mullins (15):
> COMP: Allows latex to compile for ITKSoftwareGuide
> COMP: Allows latex to compile for ITKSoftwareGuide
> COMP: Wrap MeshBase templates
> COMP: Wrap MeshBase templates
> COMP: Fix warning in BlockMatchingImageFilter
> STYLE: Line lengths in examples should be no longer than 80 chars.
> COMP: Wrap the remaining MeshBase and MeshToMeshFilter types.
> COMP: Fix LaTeX warnings.
> STYLE: Fix formatting/punctuation errors.
> STYLE: Formatting and punctuation fixes.
> DOC: Edits for Book 2 Chapter 1 documentation in the Examples.
> DOC: Edits for book 2 chapter 2.
> DOC: More chapter 2 edits
> DOC: Book 2 Chapter 3 edits (part 1)
> DOC: book 2 chapter 4 Segmentation edits
>
> Danny Perry (2):
> BUG: adding test for vnl_sparse_matrix::mult()
> BUG: size of q buffer should actually be (this->rows())*pcols.
>
> David T. Chen (1):
> DOC: Fixed HistogramThresholdImageFitler
>
> Dirk Padfield (1):
> BUG: Corrected processing of last sigma
>
> GCC-XML Upstream (1):
> ENH: pygccxml v1.6.2 (reduced)
>
> Gert Wollny (1):
> COMP: Fix SSE2 build errors with WrapITK on GCC 4.9. (ForRelease)
>
> Girish Mallya (1):
> BUG: Tests added for BinaryImageToLabelMapFilter for single-row images.
>
> Hans Johnson (24):
> COMP: Add tolerance for comparing floating point
> PERF: Remove non-threadable algorithm components
> COMP: Add tolerance for comparing floating point
> PERF: Remove non-threadable algorithm components
> PERF: Remove large foot print of PDF derivatives.
> PERF: Revert Remove large foot print of PDF derivatives.
> STYLE: Test against almost equal for floating point values
> STYLE: Non-exact floating point testing
> PERF: Distribute initialization per thread buffers
> ENH: Remove unnecessary mutable qualifier.
> STYLE: Remove comment with no meaning.
> ENH: Moved accumlator logic to main MI class
> ENH: Allow staggering of accumulations per thread.
> PERF: Zero reset thread buffers during finalize
> BUG: Syntax error in comment
> PERF: Add non-blocking mutex locking.
> ENH: Use TryLock minimize thread stalls
> BUG: ThreadedIndexedContainerPartitioner is inclusive
> STYLE: Remove include_regular_expression from Examples
> BUG: Demonstrate Inv(Inv(T)) != T
> BUG: Ensure Inv(Inv(T)) == T for transforms
> COMP: Valgrind detects uninitialized memory read
> COMP: Missing required base class API component
> ENH: Expand interface for selecting threadpool
>
> Ismael Belghiti (1):
> DOC: Spelling Error in PatchBasedDenoisingBaseImageFilter
>
> Jim Miller (1):
> STYLE: Removing what appears to be a temporary file
>
> Johan Andruejol (1):
> ENH: Fix normalization for null vectors and return the norm
>
> Jon Haitz Legarreta (1):
> ENH: New test for itkLabelShapeOpeningImageFilter
>
> Kent Williams (9):
> COMP: use find_package(VTK COMPONENTS) to specify just needed
> VTK Components
> BUG: ImageSources/test/CMakeLists.txt incorrect library var reference
> COMP: Fix coverity defects related to RegistrationV4 examples
> COMP: silence warning of vnl_vector_fixed_ref::assert_size
> COMP: Fix various Coverity warnings
> COMP: Fix a typo in an error message print statement.
> COMP: itk::Command-derived class used pointless dynamic_cast.
> PERF: Don't recompute InternalInverse repeatedly
> COMP: Correct orientation/spacing for Philips MultiFrame
>
> Mark Hiner (2):
> ENH: Update SCIFIO remote module hash
> BUG: Fix duplicate variables in Windows
>
> Matthew McCormick (105):
> DOC: Fix itkSetGetDecoratedInputMacro Doxygen macro.
> ENH: Move FFTComplexToComplexImageFilter out of Review.
> ENH: Add VnlComplexToComplexFFTImageFilter.
> BUG: Use fixed seed for Vnl FFT tests for repeatibility.
> ENH: Bump CMakeLists.txt version to 4.7.0.
> BUG: ArchiveTestingData.py future imports must occur at the beginning.
> BUG: Do not run vnl_test_na with broken libc++.
> DOC: Remove Image2.cxx reference from Book 2.
> DOC: Fix Software Guide page overruns in IterativeClosestPoint3.cxx.
> DOC: Remove references to Book 1 sections from Book 2.
> DOC: Make BinaryThresholdImageFilter not floating.
> DOC: Fix Software Guide figure caption for FlipImageFilter.
> DOC: Avoid duplicate figure description in ResampleImageFilter2.cxx.
> DOC: Remove duplicate figure in
> LaplacianRecursiveGaussianImageFilter2.cxx.
> DOC: ImageRandomConstIteratorWithIndex table reference.
> DOC: Fix Software Guide page overruns in IterativeClosestPoint{1,2}.cxx.
> DOC: Remove duplicate text in LaplacianRecursiveGaussian example.
> BUG: Uninitialized m_TransformDirection in ComplexToComplexFFTImageFilter.
> BUG: Fix offset[2] in PointSetToSpatialObjectDemonsRegistrationTest.
> STYLE: Fix style in VoronoiDiagram2D.
> BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
> BUG: Bump GCCXML to 2014-08-06.
> BUG: Remove unused m_{SplitEpsilon,SigmoidPrimeOffset}.
> BUG: Fix Win MultiThreader check for successful process creation.
> BUG: Fix VTKPolyDataMeshIO writing for 2D second rank tensor.
> COMP: Fix ImageRegistration8RegisteredSlice.png baseline name.
> DOC: itk::statistics -> itk::Statistics.
> COMP: Fix transform type for ITKv3/IterativeClosestPoint2.
> BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
> COMP: Improve const correctness of GradientRecursiveGaussianImageFilter.
> BUG: Call clear instead of empty on PatchBasedDenoising EmptyCaches().
> BUG: Fix Size() in ImageToListSampleAdaptor for VectorImage's.
> COMP: ThreadJob NULL not defined.
> BUG: Fix alpha assignment for RGBA TIFF.
> COMP: Remove unused typedefs in LevelSetsv4Visualization.
> COMP: Remove unused typedef's in VtkGlue.
> ENH: Mark BSplineWarping2Test as RUNS_LONG.
> BUG: Fix Nifti IO read with large images.
> COMP: Remove call for non-existent variable in Nifti debugging.
> BUG: Close the file on Read and Write in HDF5TransformIO.
> BUG: Remove InsightLegacy test code from TransformHDF5Test.
> ENH: Add {Set,Get}TransformIO for TransformFile{Reader,Writer}.
> STYLE: Use SeriesUIDContainerType and FileNamesContainerType
> ENH: Allow specification of orthogonality tolerance in rigid transforms.
> BUG: TransformFileReader does not clear its TransformList.
> BUG: Prevent dangling pointer in HDF5TransformIO.
> COMP: Do not use _stat64 with MinGW-32.
> BUG: Improve thread-safety and performance of
> PCAShapeSignedDistanceFunction.
> DOC: itk::statistics -> itk::Statistics.
> DOC: Remove duplicate text in LaplacianRecursiveGaussian example.
> DOC: Fix Software Guide page overruns in IterativeClosestPoint{1,2}.cxx.
> COMP: Address LaplacianDeformation Doxygen warnings.
> BUG: TransformFileReader does not clear its TransformList.
> BUG: Prevent dangling pointer in HDF5TransformIO.
> COMP: Fix missing prefix in ITKv3ImageRegistration20Test.
> BUG: Do not return SmartPointers in TimeVaryingVelocityFieldTransform
> COMP: Do not wrap the FixedArray of Image SmartPointer's.
> COMP: Add missing wrapping for TransformIOBaseTemplate.
> COMP: Mark DeformableRegistration6Test as RUNS_LONG.
> STYLE: Improve style in BinaryImageToLabelMapFilter.
> BUG: Fix BinaryImageToLabelMapFilter on 1D image.
> ENH: Improve precision of the joint PDF sum
> BUG: Fix BinShrinkImageFilter for different input/output image types.
> COMP: Fix transform type for ITKv3/IterativeClosestPoint2.
> BUG: Use -py3 when building wrapping for Python 3.
> COMP: Add missing wrapping for TransformIOBaseTemplate.
> DOC: Improve ImageRegistration4 grammar.
> ENH: Add IOTransformDCMTK Remote module.
> BUG: gdcm::StringFilter recognizes backslash delimiter.
> DOC: Add migration guide for GDCM Rescale slope intercept apply on write.
> COMP: Remove unused typedef's in GPU code.
> STYLE: Improve style of HoughTransform2DLinesImageFilter example.
> COMP: Use ConceptChecking for IterativeInverse dimension check.
> COMP: Wrap TransformIOBaseTemplate for const SmartPointer.
> COMP: Add warning exceptions for third party pcre, swig, gccxml.
> ENH: Bump ITK version to 4.6.1.
> BUG: Add missing ITK_OVERRIDE to ITKImageeSources module.
> BUG: Remove GaussianImageSource members shadowing GenerateImageSource.
> STYLE: Style fixes to ITKImageSources module.
> BUG: GaussianSpatialFunction and GaborImageSource use SpacePrecisionType.
> BUG: Do not perform itk_download_attempt_check when not building ITK.
> DOC: Update GDCMImageIO rescale slope intercept doc.
> BUG: Only register requestion IO COMPONENT modules.
> BUG: Fix wrapping .i, .idx CMake dependencies.
> COMP: Add VTK Python module when wrapping ITKVtkGlue.
> STYLE: Remove NULL definition in itkVoronoiDiagram2DGenerator.
> STYLE: VoronoiDiagram2DGenerator defines a VoronoiDiagramType typedef.
> COMP: Add missing VTK module dependency for LevelSetsv4Visualization.
> BUG: By default, do not create any fixed parameters.
> STYLE: Remove trivial method comments in itkTransform.hxx.
> BUG: PolylineMask Filter's GenerateData is protected / virtual.
> ENH: Add HigherOrderAccurateGradient Module.
> BUG: Use input RequestedRegion Index in SliceBySliceImageFilter internal.
> COMP: Remove extra semi-colon, variable scope in DCMTKFileReader.
> STYLE: Style fixes for Transform classes.
> DOC: Increase Doxygen LOOKUP_CACHE_SIZE.
> BUG: MatrixOffsetTransformBase::GetFixedParameters not thread safe.
> DOC: Index Wiki examples with Doxygen.
> COMP: Bump SphinxExamples remote module.
> DOC: Index Sphinx examples in Doxygen.
> COMP: Remove old java examples.
> COMP: Remove duplicate DiffusionTensor3DReconstruction example reference.
> COMP: Address GradientAnisotropicDiffusionImageFilter example settings.
> COMP: Bump Sphinx Examples remote.
> COMP: Bump WikiExamples remote.
>
> MetaIO Maintainers (1):
> MetaIO (reduced)
>
> Michka Popoff (40):
> ENH: Fixes for python 3 support
> BUG: Add VTK_VERSION for older VTK versions
> BUG: Improve SWIG version check
> COMP: Add wrapping for ThreadPool and ThreadJob
> COMP: Remove unimplemented DestroyPool method
> COMP: Fix itkVnlComplexToComplexFFTImageFilter wrapping
> COMP: Do not hide pygccxml warnings
> ENH: Update links in readme file
> BUG: Improve SWIG version check
> BUG: Add VTK_VERSION for older VTK versions
> STYLE: Remove trailing whitespaces
> STYLE: Set ITK_USE_SYTEM_ZLIB and ITK_USE_SYTEM_SZIP
> BUG: Fix memory leak in MetaImageIO after exception
> ENH: Add script to update pygccxml from upstream
> BUG: Update VTK minimum version (for release)
> BUG: Fix memory leak in MetaImageIO after exception
> ENH: Remove Sun OS compatibility for the wrappings
> COMP: Fix for conversion to non-pointer like type warning
> STYLE: LabelObject style
> DOC: Remove broken link from LabelObject class description
> ENH: Do not setup the python tests if not asked
> ENH: Add new GetTypes() and GetTypesAsList() methods to the template class
> COMP: Fix CMP0054 warnings in wrappings
> STYLE: Remove old cmake < 2.8.4 specific code
> STYLE: Remove old cmake < 2.8.5 specific code
> ENH: Update to PCRE 8.36
> COMP: Refactor Wrapping setup and fix legacy warnings
> ENH: Add wrapping configuration to ITKConfig.cmake
> STYLE: Some minor code cleanup in the wrapping setup
> DOC: Fix typo in RelabelComponentImageFilter
> ENH: Deprecate VectorResampleImageFilter
> DOC: Add migration guide for ::Zero and ::One
> ENH: Deprecate ::Zero and ::One
> ENH: Add option to disable sorting by size in
> itkRelabelComponentImageFilter
> ENH: Add Vector and RGB wrapping to linear interpolator
> STYLE: Remove SORT macro in wrappings
> COMP: Fix warning for InterpolateImageFunction wrapping
> COMP: Add a check for Blocks in GPU module
> COMP: Bump SCIFIO to fix test build warnings
> COMP: Fix wrapping of itkImageFunctionBase
>
> Nick Tustison (7):
> BUG: Need to explicitly specify spline order.
> ENH: Initializing the transform center.
> BUG: Need to check the dynamic cast before any calls.
> ENH: Adding modifications for point set metrics.
> BUG: Need to specify TInternalComputationValueType for default metric.
> ENH: Adding sparse points to B-spline field estimate.
> BUG: Uninitialized variables.
>
> Richard Beare (1):
> ENH: Include TIFF tags in the MetaDataDictionary
>
> Taylor Braun-Jones (1):
> BUG: Fix SliceBySliceImageFilter doesn't propagate information internally
>
> Umang B (1):
> ENH: Use thread pool to dispatch multithreading tasks
>
> Vivien Delmon (2):
> BUG: ExtractImageFilter::CollapseToSubMatrix fix
> ENH: Add a test on extracted directions in CollapseToSubMatrix mode
>
> Vladimir S. FONOV (1):
> BUG: Fixing incorrect MINC style inverse transform
>
>
>
> -----------------------------------------------------
> Errors or omissions? Please fix them here:
>
> https://docs.google.com/document/d/1V0zNgFrm_GyF1jOC00fMq-7VBXk4hHmHL62qByfeKP4/edit?usp=sharing
> _______________________________________________
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