[Insight-users] Installing python ITK Mac
marvey99
m.doyley at rochester.edu
Thu Jun 13 21:00:27 EDT 2013
Hi there,
I get the following error message
Fatal Python error: PyThreadState_Get: no current thread
tanks
M
PS
Here is the problem details and system configuration
Process: Python [25953]
Path:
/Library/Frameworks/Python.framework/Versions/7.3/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 2.7.3 (2.7.3)
Code Type: X86 (Native)
Parent Process: zsh [24886]
User ID: 501
Date/Time: 2013-06-13 20:56:14.902 -0400
OS Version: Mac OS X 10.8.4 (12E55)
Report Version: 10
Interval Since Last Report: 722 sec
Crashes Since Last Report: 1
Per-App Crashes Since Last Report: 1
Anonymous UUID: D2249165-2EA6-8258-4636-429BDF19B97D
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Application Specific Information:
abort() called
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x97125a6a __pthread_kill + 10
1 libsystem_c.dylib 0x971b5b2f pthread_kill + 101
2 libsystem_c.dylib 0x971ec4ec abort + 168
3 org.python.python 0x0a5782d2 Py_FatalError + 61
4 org.python.python 0x0a5776d6 PyThreadState_Get + 35
5 org.python.python 0x0a56fc80 Py_InitModule4 + 40
6 _SimpleITK.so 0x02e56ca3 init_SimpleITK + 611
7 org.python.python 0x000e76d7 _PyImport_LoadDynamicModule +
167
8 org.python.python 0x000e5063 load_module + 227
9 org.python.python 0x000e6fef imp_load_module + 207
10 org.python.python 0x000cb2d1 PyEval_EvalFrameEx + 21649
11 org.python.python 0x000cc053 PyEval_EvalFrameEx + 25107
12 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
13 org.python.python 0x000cd1b7 PyEval_EvalCode + 87
14 org.python.python 0x000e3ccc PyImport_ExecCodeModuleEx +
188
15 org.python.python 0x000e496c load_source_module + 540
16 org.python.python 0x000e558d import_submodule + 301
17 org.python.python 0x000e57e9 load_next + 201
18 org.python.python 0x000e6198 PyImport_ImportModuleLevel +
344
19 org.python.python 0x000bf38f builtin___import__ + 159
20 org.python.python 0x0000f635 PyObject_Call + 85
21 org.python.python 0x000c4eae PyEval_CallObjectWithKeywords
+ 78
22 org.python.python 0x000c7512 PyEval_EvalFrameEx + 5842
23 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
24 org.python.python 0x000cb9db PyEval_EvalFrameEx + 23451
25 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
26 org.python.python 0x000cb253 PyEval_EvalFrameEx + 21523
27 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
28 org.python.python 0x000cb253 PyEval_EvalFrameEx + 21523
29 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
30 org.python.python 0x000cb253 PyEval_EvalFrameEx + 21523
31 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
32 org.python.python 0x000cb253 PyEval_EvalFrameEx + 21523
33 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
34 org.python.python 0x000cb253 PyEval_EvalFrameEx + 21523
35 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
36 org.python.python 0x000cb253 PyEval_EvalFrameEx + 21523
37 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
38 org.python.python 0x000cb253 PyEval_EvalFrameEx + 21523
39 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
40 org.python.python 0x000cd1b7 PyEval_EvalCode + 87
41 org.python.python 0x000f1898 PyRun_FileExFlags + 168
42 org.python.python 0x000f27c3 PyRun_SimpleFileExFlags + 867
43 org.python.python 0x0010ba58 Py_Main + 3560
44 org.python.python 0x00001fb6 0x1000 + 4022
Thread 1:
0 libsystem_kernel.dylib 0x971258e2 __psynch_cvwait + 10
1 libsystem_c.dylib 0x971b9280 _pthread_cond_wait + 833
2 libsystem_c.dylib 0x9723f095 pthread_cond_wait$UNIX2003 +
71
3 org.python.python 0x0010882c PyThread_acquire_lock + 172
4 org.python.python 0x000c4b73 PyEval_RestoreThread + 67
5 org.python.python 0x0010d7ee lock_PyThread_acquire_lock +
94
6 org.python.python 0x000cb2d1 PyEval_EvalFrameEx + 21649
7 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
8 org.python.python 0x000cb253 PyEval_EvalFrameEx + 21523
9 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
10 org.python.python 0x000cb253 PyEval_EvalFrameEx + 21523
11 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
12 org.python.python 0x00042282 function_call + 162
13 org.python.python 0x0000f635 PyObject_Call + 85
14 org.python.python 0x000c889b PyEval_EvalFrameEx + 10843
15 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
16 org.python.python 0x000cb253 PyEval_EvalFrameEx + 21523
17 org.python.python 0x000cc053 PyEval_EvalFrameEx + 25107
18 org.python.python 0x000cc053 PyEval_EvalFrameEx + 25107
19 org.python.python 0x000cd02a PyEval_EvalCodeEx + 2042
20 org.python.python 0x00042282 function_call + 162
21 org.python.python 0x0000f635 PyObject_Call + 85
22 org.python.python 0x00021fe6 instancemethod_call + 422
23 org.python.python 0x0000f635 PyObject_Call + 85
24 org.python.python 0x000c4eae PyEval_CallObjectWithKeywords
+ 78
25 org.python.python 0x0010e18c t_bootstrap + 76
26 libsystem_c.dylib 0x971b45b7 _pthread_start + 344
27 libsystem_c.dylib 0x9719ed4e thread_start + 34
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0x00000000 ebx: 0x000e7641 ecx: 0xbfffc3ac edx: 0x97125a6a
edi: 0xac982a28 esi: 0x00000006 ebp: 0xbfffc3c8 esp: 0xbfffc3ac
ss: 0x00000023 efl: 0x00000206 eip: 0x97125a6a cs: 0x0000000b
ds: 0x00000023 es: 0x00000023 fs: 0x00000000 gs: 0x0000000f
cr2: 0x971ec444
Logical CPU: 0
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0xa551000 - 0xa639fff org.python.python (2.7.2 - 2.7.2)
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/System/Library/Frameworks/Python.framework/Versions/2.7/Python
0x8fec7000 - 0x8fef9e57 dyld (210.2.3)
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0x90007000 - 0x90007fff libsystem_blocks.dylib (59)
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/usr/lib/system/libsystem_blocks.dylib
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/usr/lib/system/libsystem_network.dylib
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0x90f52000 - 0x90f59fff libsystem_dnssd.dylib (379.38.1)
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0x911c8000 - 0x911c8fff com.apple.Accelerate.vecLib (3.8 - vecLib 3.8)
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/usr/lib/system/libsystem_sandbox.dylib
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0x92dc5000 - 0x92dccfff liblaunch.dylib (442.26.2)
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0x931d6000 - 0x931d7fff libDiagnosticMessagesClient.dylib (8)
<39B3D25A-148A-3936-B800-0D393A00E64F>
/usr/lib/libDiagnosticMessagesClient.dylib
0x931d8000 - 0x931e3fff libcommonCrypto.dylib (60027)
<8EE30FA5-AA8D-3FA6-AB0F-05DA8B0425D9> /usr/lib/system/libcommonCrypto.dylib
0x938ac000 - 0x938d8ff7 libsystem_info.dylib (406.17)
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0x93968000 - 0x9396bff7 libcompiler_rt.dylib (30)
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0x93da7000 - 0x93df5ff3 com.apple.SystemConfiguration (1.12.2 - 1.12.2)
<6E858B9F-337A-314E-88B7-24A274ACE568>
/System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
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/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x940c6000 - 0x94112fff libcorecrypto.dylib (106.2)
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0x94113000 - 0x94155fff libauto.dylib (185.4)
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0x94a2d000 - 0x94a2dfff com.apple.Accelerate (1.8 - Accelerate 1.8)
<4EC0548E-3A3F-310D-A366-47B51D5B6398>
/System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
0x94a2e000 - 0x94a36fff libcopyfile.dylib (89)
<4963541B-0254-371B-B29A-B6806888949B> /usr/lib/system/libcopyfile.dylib
0x953e0000 - 0x953e1fff libdnsinfo.dylib (453.19)
<3B523729-84A8-3D0B-B58C-3FC185060E67> /usr/lib/system/libdnsinfo.dylib
0x9541b000 - 0x95422ffb libunwind.dylib (35.1)
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0x956ed000 - 0x956eefff libquarantine.dylib (52.1)
<094A1501-373E-3397-B632-8F7C5AC8EFD5> /usr/lib/system/libquarantine.dylib
0x956ef000 - 0x956f9fff libsystem_notify.dylib (98.5)
<7EEE9475-18F8-3099-B0ED-23A3E528ABE0>
/usr/lib/system/libsystem_notify.dylib
0x9571e000 - 0x9582b057 libobjc.A.dylib (532.2)
<FA455371-7395-3D58-A89B-D1520612D1BC> /usr/lib/libobjc.A.dylib
0x95837000 - 0x9583bffe libcache.dylib (57)
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0x9583c000 - 0x95a24ffb com.apple.CoreFoundation (6.8 - 744.19)
<DDD3AA21-5B5F-3D8F-B137-AD95FCA89064>
/System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x969f8000 - 0x969f8fff libkeymgr.dylib (25)
<D5E93F7F-9315-3AD6-92C7-941F7B54C490> /usr/lib/system/libkeymgr.dylib
0x969f9000 - 0x96a8bffb libvMisc.dylib (380.6)
<6DA3A03F-20BE-300D-A664-B50A7B4E4B1A>
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x96ad3000 - 0x96b03fff libncurses.5.4.dylib (37.3)
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0x96b9d000 - 0x96d26ff7 com.apple.vImage (6.0 - 6.0)
<1D1F67FE-4F75-3689-BEF6-4A46C8039E70>
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x96d6a000 - 0x96d6afff libSystem.B.dylib (169.3)
<81C58EAB-0E76-3EAB-BDFD-C5A6FE95536F> /usr/lib/libSystem.B.dylib
0x96ea7000 - 0x96ea9fff libdyld.dylib (210.2.3)
<05D6FF2A-F09B-309D-95F7-7AF10259C707> /usr/lib/system/libdyld.dylib
0x96fa8000 - 0x9700cff3 libstdc++.6.dylib (56)
<F8FA490A-8F3C-3645-ABF5-78926CE9C62C> /usr/lib/libstdc++.6.dylib
0x97111000 - 0x9712bffc libsystem_kernel.dylib (2050.24.15)
<9E58DCC0-D5FF-37E1-AA7F-F2206719E138>
/usr/lib/system/libsystem_kernel.dylib
0x9717b000 - 0x9719dfff libc++abi.dylib (26)
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0x9719e000 - 0x9725bfeb libsystem_c.dylib (825.26)
<6E35A83F-1A5B-3AF9-8C6D-D7B57B25FB63> /usr/lib/system/libsystem_c.dylib
0x9726d000 - 0x9726effd libunc.dylib (25)
<58599CBF-E262-3CEA-AFE1-35560E0177DC> /usr/lib/system/libunc.dylib
0x972ab000 - 0x972b9ff7 libz.1.dylib (43)
<245F1B61-2276-3BBB-9891-99934116D833> /usr/lib/libz.1.dylib
0x972ba000 - 0x972beff7 libmacho.dylib (829)
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0x99a8d000 - 0x99e45ffa libLAPACK.dylib (1073.4)
<9A6E5EAD-F2F2-3D5C-B655-2B536DB477F2>
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 39
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 968298
thread_create: 1
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=171.6M resident=77.8M(45%)
swapped_out_or_unallocated=93.8M(55%)
Writable regions: Total=55.3M written=19.5M(35%) resident=28.5M(52%)
swapped_out=0K(0%) unallocated=26.8M(48%)
REGION TYPE VIRTUAL
=========== =======
MALLOC 37.2M
MALLOC guard page 32K
Memory tag=35 9584K
Stack 68.0M
VM_ALLOCATE 8K
__DATA 7248K
__DATA/__OBJC 52K
__IMPORT 180K
__LINKEDIT 60.7M
__PAGEZERO 4K
__TEXT 110.9M
__UNICODE 544K
mapped file 154.9M
shared memory 12K
=========== =======
TOTAL 448.9M
Model: MacBookAir3,2, BootROM MBA31.0061.B07, 2 processors, Intel Core 2
Duo, 1.86 GHz, 4 GB, SMC 1.66f61
Graphics: NVIDIA GeForce 320M, NVIDIA GeForce 320M, PCI, 256 MB
Memory Module: BANK 0/DIMM0, 2 GB, DDR3, 1067 MHz, 0x80CE,
0x4D34373142353237334348302D5946382020
Memory Module: BANK 1/DIMM0, 2 GB, DDR3, 1067 MHz, 0x80CE,
0x4D34373142353237334348302D5946382020
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xD1),
Broadcom BCM43xx 1.0 (5.106.98.100.17)
Bluetooth: Version 4.1.4f2 12041, 2 service, 18 devices, 1 incoming serial
ports
Network Service: AirPort, AirPort, en0
Serial ATA Device: OWC Mercury Aura Pro Express SSD, 240.06 GB
USB Device: FaceTime Camera (Built-in), apple_vendor_id, 0x850a, 0x24600000
/ 2
USB Device: Internal Memory Card Reader, apple_vendor_id, 0x8403, 0x26100000
/ 2
USB Device: BRCM2070 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x04500000 / 3
USB Device: Bluetooth USB Host Controller, apple_vendor_id, 0x821b,
0x04530000 / 4
USB Device: Apple Internal Keyboard / Trackpad, apple_vendor_id, 0x023f,
0x04300000 / 2
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