[Insight-users] [ANNOUNCE] ITK 4.4.0 has been released!
Panagiotis Foteinos
panagiotis.foteinos at gmail.com
Wed Jul 10 14:25:28 EDT 2013
I have given all the permissions to the file in question.
The error I am getting is:
*********************
/home/pfoteino/local/bin/itk-4.4.0-bin/release/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:142
(from MINC2): Unable to open file
'/home/pfoteino/ITK_Images/BigBrain/full16_100um_2009b_sym.mnc'
ExceptionObject caught!
itk::ExceptionObject (0x28ab790)
Location: "unknown"
File:
/home/pfoteino/local/src/ITK-4.4.0/Modules/IO/ImageBase/src/itkImageIOBase.cxx
Line: 366
Description: itk::ERROR: MINCImageIO(0x28aecf0): Unknown component type: 0
*********************
Best,
Panagiotis
On Wed, Jul 10, 2013 at 2:10 PM, Bill Lorensen <bill.lorensen at gmail.com>wrote:
> Also, check the permissions on the file. And please post the new error.
> The error message should now include the full path name.
>
>
>
> On Wed, Jul 10, 2013 at 1:44 PM, Panagiotis Foteinos <
> panagiotis.foteinos at gmail.com> wrote:
>
>> Thank you for the reply.
>>
>> It did not solve the problem, however. Same error.
>>
>> Regards,
>> Panagiotis Foteinos
>>
>>
>> On Wed, Jul 10, 2013 at 1:16 PM, Bill Lorensen <bill.lorensen at gmail.com>wrote:
>>
>>> When you specify the file, you should provide the full path to the file.
>>> The error says the file cannot be opened:
>>> full16_100um_2009b_sym.mnc
>>>
>>>
>>>
>>>
>>> On Wed, Jul 10, 2013 at 1:07 PM, Panagiotis Foteinos <
>>> panagiotis.foteinos at gmail.com> wrote:
>>>
>>>> Greetings.
>>>>
>>>> Glad to see that MINC is supported.
>>>>
>>>>
>>>> So, I enblabled MINC support and everything compiled nicely. Attempting
>>>> to read, however, a *.mnc file, yielded the following error:
>>>>
>>>>
>>>> ********************
>>>> /home/pfoteino/local/bin/itk-4.4.0-bin/release/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:142
>>>> (from MINC2): Unable to open file 'full16_100um_2009b_sym.mnc'
>>>> ExceptionObject caught!
>>>>
>>>> itk::ExceptionObject (0x1fc2440)
>>>> Location: "unknown"
>>>> File:
>>>> /home/pfoteino/local/src/ITK-4.4.0/Modules/IO/ImageBase/src/itkImageIOBase.cxx
>>>> Line: 366
>>>> Description: itk::ERROR: MINCImageIO(0x1fc0cd0): Unknown component
>>>> type: 0
>>>> ********************
>>>>
>>>> The MINC image I used was taken from the BigBrain project.
>>>>
>>>> Any suggestions?
>>>>
>>>>
>>>> Best Regards,
>>>> Panagiotis Foteinos
>>>>
>>>>
>>>> On Mon, Jun 3, 2013 at 5:06 PM, Matt McCormick <
>>>> matt.mccormick at kitware.com> wrote:
>>>>
>>>>> The InsightToolkit (ITK) 4.4.0 has been released!
>>>>>
>>>>> The 4.4 release is a major milestone that marks the hard work of many
>>>>> outstanding community members.
>>>>>
>>>>> Links to the Sourceforge.net tarballs can be found on the download
>>>>> page:
>>>>>
>>>>> http://www.itk.org/ITK/resources/software.html
>>>>>
>>>>>
>>>>> We will discuss what is new in 4.4.0 on Tuesday, June 11 at 3PM
>>>>> Eastern Time (GMT -5). To take part, join the “ITK BarCamp”
>>>>> GooglePlus Community, and join the “What’s New in Release 4.4.0”
>>>>> Event. A link to the YouTube live stream of the event will also be
>>>>> posted at
>>>>>
>>>>> http://www.itk.org/ITK/resources/webinars.html
>>>>>
>>>>>
>>>>> In summary:
>>>>>
>>>>> We are excited to announce two new ImageIO modules available in the
>>>>> main repository. The MINC ImageIO module provides a bridge to the
>>>>> MINC file format, a powerful medical imaging format used by the MINC
>>>>> library, another open source library with many features similar to
>>>>> ITK. The new MINC module, which has Image IO and Transform IO
>>>>> capabilities, is considered experimental and must be enabled by
>>>>> turning Module_ITKIOMINC ON in CMake’s configuration. This will
>>>>> automatically build the MINC library, which is now available on Mac,
>>>>> Linux, and Windows. The HDF5-based MINC2 file format is supported,
>>>>> but support for the NetCDF-based MINC1 file format is not supported
>>>>> because NetCDF is not distributed with ITK.
>>>>>
>>>>> Another new ImageIO module that expands the reach of ITK is the SCIFIO
>>>>> module. SCIFIO is a refactoring of the Bio-Formats library. This
>>>>> module provides access to a wide range of file formats encountered in
>>>>> life sciences/microscopy environments. This experimental feature is
>>>>> available a Remote module; to enable it, set the Fetch_SCIFIO CMake
>>>>> variable to ON. Many improvements and fixes are ongoing for this
>>>>> module; Git master is recommended for those interested in this module.
>>>>>
>>>>> A number of improvements were also made to DCMTK ImageIO, but this
>>>>> module remains experimental on disabled by default. To try DCMTK
>>>>> ImageIO support, turn the CMake option Module_ITKIODCMTK ON. For Unix
>>>>> platforms, the supporting DCMTK library will automatically be built as
>>>>> a CMake ExternalProject. On Windows, the DCMTK library must be built
>>>>> independently of the ITK build system. Then, specify the location to
>>>>> the external build after setting the CMake option ITK_USE_SYSTEM_DCMTK
>>>>> ON.
>>>>>
>>>>> A number of performance improvements were made to QuadEdgeMesh
>>>>> processing and memory copy functions. A new ImageScanlineIterator is
>>>>> available. This iterator can be used in many of the cases where an
>>>>> ImageRegionIterator is applied, but it has better performance.
>>>>>
>>>>> The approach to split image regions for parallel processing is no
>>>>> longer hard coded to make multiple options available.
>>>>>
>>>>> An API design change was started to improve the implied functionality
>>>>> of the GetObject methods. The non-const “GetObjectMacro” has been
>>>>> replaced with a “GetModifiableObjectMacro” that will result in a
>>>>> GetModifiableXXX method instead of a GetXXX method. This makes the
>>>>> non-const nature of the method and the circumvention of pipeline
>>>>> update semantics explicit for both the code author and those reading
>>>>> the class API. This was implemented in a backwards compatible way,
>>>>> and it will only be enforced if ITK_FUTURE_LEGACY_REMOVE is defined.
>>>>>
>>>>> Support for the Google Double Conversion library was added to improve
>>>>> the reading and writing of double values as ASCII text with the
>>>>> intention to improve the precision of the text transform file format’s
>>>>> serialization.
>>>>>
>>>>> It is now easier to identify filter inputs by both a string name or an
>>>>> integer index. The internal methods to store and retrieve inputs by
>>>>> either string or index was correspondingly refactored, and performance
>>>>> was also improved.
>>>>>
>>>>> JPEG ImageIO now writes and reads image spacing in a manner similar to
>>>>> the TIFF ImageIO.
>>>>>
>>>>> An extensive amount of code cruft was removed and coding style was
>>>>> made more consistent; ITK gets more stylish and classy with every
>>>>> release!
>>>>>
>>>>> The ExternalData method to store large testing data outside of the Git
>>>>> repository is now in upstream CMake 2.8.11. Our internal version has
>>>>> been updated to the improved version in CMake.
>>>>>
>>>>> The minimum CMake required version was bumped to 2.8.8 on Windows and
>>>>> 2.8.5 otherwise. This may be increased even higher in the near future
>>>>> to ensure all CMake features utilized operate correctly.
>>>>>
>>>>> Known assertion failures occur when compiled under Visual Studio in
>>>>> the Debug configuration. This will be fixed in 4.4.1. If this has a
>>>>> significant negative impact on your work, please consider contributing
>>>>> a Nightly dashboard build under this configuration. As previously
>>>>> scheduled, Visual Studio 2005 is no longer be supported.
>>>>>
>>>>> Support for building against system third party libraries continues to
>>>>> improve. Further improvements are expected for version 4.5.
>>>>>
>>>>> All tests are now passing again on the Nightly big-endian dashboard
>>>>> system.
>>>>>
>>>>> InsightApplications (ITKApps) has seen fixes in the FLTK superbuild
>>>>> and the TCL wrapped applications.
>>>>>
>>>>>
>>>>>
>>>>> Changes in ITK from v4.3.0 to v4.4.0 from the Git log:
>>>>>
>>>>> Ali Ghayoor (7):
>>>>> ENH: Get the internal transforms of SyN registration filter
>>>>> COMP: Fix all valid cppcheck warnings in "Module/Filtering"
>>>>> directory
>>>>> COMP: Fix all valid cppcheck warnings in "Module/Core"
>>>>> directory
>>>>> COMP: Fix all valid cppcheck warnings in "Module/Segmentation"
>>>>> directory
>>>>> COMP: Fix all valid cppcheck warnings in "Module/Registration"
>>>>> directory
>>>>> COMP: Fix all valid cppcheck warnings in ITK (last patch)
>>>>> COMP: Fix all valid cppcheck warnings in "ITK/Module" directory
>>>>>
>>>>> Arnaud Gelas (4):
>>>>> PERF: improve performance of couple of methods of
>>>>> itk::QuadEdgeMesh
>>>>> PERF: couple of speed up improvements for QuadEdgeMesh
>>>>> processing
>>>>> PERF: avoid doing GetPoint and SetPoint for the same point
>>>>> ENH: Simplify template parameters in itk::PointsLocator
>>>>>
>>>>> Bill Lorensen (20):
>>>>> ENH: Prevent duplicate loading of dynamic libraries
>>>>> COMP: Fix compile error in PhilipsRECImageIO
>>>>> COMP: Fix compile error in PhilipsRECImageIO
>>>>> BUG: Memory leak after failed RegisterFactory
>>>>> BUG: Warn on directories
>>>>> ENH: Refactor DoubleToString into NumberToString
>>>>> DOC: Escape hash in comment
>>>>> STYLE: Apply kwstyle to Modules/Core tests
>>>>> STYLE: Apply kwstyle to Modules/Filtering tests
>>>>> STYLE: Apply kwstyle to Modules/Segmentation tests
>>>>> STYLE: Apply kwstyle to Modules/IO tests
>>>>> STYLE: Apply kwstyle to Modules/Numerics tests
>>>>> STYLE: Apply kwstyle to Modules/Registration tests
>>>>> STYLE: Apply kwstyle to some tests
>>>>> BUG: Memory leak after failed RegisterFactory
>>>>> COMP: Remove copy_n wrapper for standard std::copy
>>>>> COMP: Make the test stable by removing random source
>>>>> COMP: More baselines
>>>>> COMP: Another baseline
>>>>> COMP: Missing return error after exception
>>>>>
>>>>> Brad King (14):
>>>>> BUG: ExternalData: Do not match directory names when resolving
>>>>> DATA{}
>>>>> STYLE: ExternalData: Cleanup stray TODO and typo in comments
>>>>> STYLE: ExternalData: Remove unused private interface
>>>>> ENH: ExternalData: Improve series matching using an explicit
>>>>> syntax
>>>>> ENH: ExternalData: Allow ()-groups in series match regex
>>>>> ENH: ExternalData: Allow DATA{} syntax to reference directories
>>>>> ENH: Configure new ExternalData series parsing for ITK
>>>>> baselines
>>>>> BUG: ExternalData: Collapse ../ components in DATA{} paths
>>>>> BUG: Fix "git gerrit-push" for content links with spaces
>>>>> STYLE: Add detail to the vxl update instructions
>>>>> STYLE: Add more detail to the vxl update instructions
>>>>> ENH: ExternalData: Partly generalize hash algo/ext handling
>>>>> ENH: ExternalData: Attach download rules to content links in
>>>>> IDEs
>>>>> ENH: ExternalData: Preserve escaped semicolons during argument
>>>>> expansion
>>>>>
>>>>> Bradley Lowekamp (78):
>>>>> STYLE: Use ITK_ prefix for FFTW cmake variables and defines
>>>>> BUG: Change default boundary condition to ZeroFlux
>>>>> ENH: wrapping itkImageSeriesWriter
>>>>> BUG: incorrect CMake variable for system jpeg include
>>>>> DOC: Correct description of Bitwise binary filters
>>>>> BUG: incorrect CMake variable for system jpeg include
>>>>> COMP: GetTimeVaryingVelocityField methods did not compile
>>>>> ENH: Creating templateless region splitter classes
>>>>> ENH: Adding image region splitter for separable filtering
>>>>> PERF: Do not spawn threads that will not be used.
>>>>> ENH: ImageIO's now use ImageRegionSplitter base
>>>>> COMP: Specify export for Specialized Array output operators
>>>>> ENH: making old ImageRegionSplitter compatible with new
>>>>> splitter
>>>>> BUG: initials Direction IVAR
>>>>> STYLE: never a space before;
>>>>> COMP: Address unused parameter warning in GPU code
>>>>> BUG: Do not create static initialized ITK objects
>>>>> ENH: Converted Multidimensional splitter to new base class
>>>>> ENH: moving old ImageRegionSplitter to Deprecated Module
>>>>> BUG: Only thread 0 should report progress.
>>>>> PERF: Use std::fill for image filling
>>>>> BUG: Only thread 0 should report progress in LabelMapFilters
>>>>> COMP: Adding missing header
>>>>> BUG: Using CMake variable in external builds with autoconf
>>>>> environment
>>>>> BUG: initialize InverseCovariance size with degenerate matrix
>>>>> ENH: Adding numeric_traits specializations for "long long"
>>>>> ENH: instantiate vnl types with "long long" on all platforms
>>>>> Revert "ENH: Use named inputs in BinaryReconstruction filters."
>>>>> BUG: initialize InverseCovariance size with degenerate matrix
>>>>> BUG: Using CMake variable in external builds with autoconf
>>>>> environment
>>>>> COMP: Address unused parameter warning in GPU code
>>>>> BUG: Only thread 0 should report progress in LabelMapFilters
>>>>> BUG: Only thread 0 should report progress.
>>>>> COMP: Adding missing header
>>>>> ENH: Adding support for instantiating long long pixel types
>>>>> BUG: VerifyPreconditions checks required named inputs
>>>>> PERF: Adding performance oriented ScanlineIterator
>>>>> COMP: Remove copy_n wrapper for standard std::copy
>>>>> COMP: Missing ProgressReporter header
>>>>> COMP: Suppress linker warning from fftw external project
>>>>> COMP: Add missing ImageRegionIterator header in test
>>>>> BUG: Don't allocate empty names in Get I/O Names methods
>>>>> COMP: Make GPUFunctorBase destructor virtual
>>>>> PERF: Changing filters to use ImageScanlineInterator
>>>>> COMP: GCC_XML external project does not use BUILD_EXAMPLES
>>>>> BUG: Scanline iterator in STAPLE filter not advanced to next
>>>>> line
>>>>> PERF: Use ImageScanlineIterator in ImageAlgorithm::Copy
>>>>> PERF: Use iterators into name map for index inputs
>>>>> ENH: index can be associated with required input
>>>>> PERF: Add global variable of index names in ProcessObject
>>>>> COMP: fix unused result warning in ProcessObject
>>>>> ENH: Remove names inputs specialized comparison
>>>>> DOC: Updated input methods doxygen
>>>>> PERF: Use ImageAlgorithm::Copy in JoinSeries filter
>>>>> PERF: Change default index i/o prefix to just "_"
>>>>> PERF: Use ImageAlgorithm::Copy in CastImageFilter
>>>>> COMP: Fix failing implicit conversion from NULL
>>>>> BUG: restore gnu aligned attribute
>>>>> PERF: ImageAlgorithm::copy to use std::copy for conversion
>>>>> PERF: Store indexed outputs in array for constant time access
>>>>> COMP: GCC_XML compilation error with type_traits
>>>>> BUG: Add unsigned int concept check to LabelVoting filter
>>>>> COMP: Disable conversion warning for std::copy in
>>>>> ImageAlgorithm
>>>>> BUG: Use correct types for TIFF Tags and buff math
>>>>> BUG: Use local var for TIFF va_list parameter
>>>>> BUG: Use correct bytes for BigEndian magic number
>>>>> COMP: Fix int to char narrowing error and warning
>>>>> COMP: Fix int to char narrowing error and warning
>>>>> COMP: Fix scanf conversion specification to %u
>>>>> COMP: Fix scanf conversion specification for id types
>>>>> BUG: Remove extraneous print statement in tiffio
>>>>> BUG: Incorrect va_arg type used in TIFF and LSM
>>>>> BUG: JPEG2000 bool type in C is now unsigned char
>>>>> BUG: add a test to demonstrate ThreadedIteratorPartitioner bug
>>>>> BUG: Fix written other magic number in FreeSurferBinaryMeshIO
>>>>> COMP: Fix assert in LSM, = in err of ==
>>>>> BUG: IteratorPartitioner extra thread don't advance
>>>>> BUG: C++ bool is 4 bytes on osx ppc
>>>>>
>>>>> Brian Helba (11):
>>>>> STYLE: Ensure documentation \author tags are parsed
>>>>> STYLE: Remove unnecessary overloads in favor of implicit
>>>>> conversion
>>>>> PERF: Replace deep copy with const const signature
>>>>> ENH: Re-enable LoadPrivateTags option in GDCMImageIO
>>>>> STYLE: Slightly refactor ImageFileWriter::Write to simplify
>>>>> logic
>>>>> ENH: Always enable Get*FromTag methods in GDCMImageIO
>>>>> DOC: Fix misspelling in MorphologyImageFilter
>>>>> DOC: Fix misspelling in ObjectMorphologyImageFilter
>>>>> STYLE: Remove unnecessary function call in GDCMImageIO
>>>>> STYLE: Remove calls to deprecated functionality from DICOM
>>>>> Examples / Tests
>>>>> ENH: Allow Get*FromTag to accept uppercase hex
>>>>>
>>>>> Cory Quammen (1):
>>>>> COMP: Bumped up minimum required CMake version
>>>>>
>>>>> Cyrille Faucheux (2):
>>>>> ENH: allow the ClampImageFilter to use user-defined bounds
>>>>> (#3016).
>>>>> ENH: Move the ClampImageFilter to the ImageIntensity module
>>>>> (#3016).
>>>>>
>>>>> David Cole (4):
>>>>> BUG: Avoid using def file when BUILD_SHARED_LIBS is off
>>>>> BUG: Do not undefine _WIN32_WINNT
>>>>> BUG: Avoid using def file when BUILD_SHARED_LIBS is off
>>>>> BUG: Do not undefine _WIN32_WINNT
>>>>>
>>>>> David Fuentes (2):
>>>>> ENH: Allow block matching on diff size images
>>>>> ENH: wrapping itkMaskFeaturePointSelectionFilter
>>>>> itkBlockMatchingImageFilter
>>>>>
>>>>> Dirk Padfield (6):
>>>>> BUG: CSVFileReader was reading all values as NaN
>>>>> DOC: Made AnisotropicDiffusion documentation consistent with
>>>>> code
>>>>> ENH: Enable MetaIO to read filenames with spaces using regex
>>>>> BUG: CSVFileReader was reading all values as NaN
>>>>> ENH: Added m_RequiredFractionOfOverlappingPixels to
>>>>> MaskedFFTNCC
>>>>> BUG: SignedMaurerDistanceMap in 4D
>>>>>
>>>>> Google double-conversion Maintainers (1):
>>>>> Google double-conversion (reduced)
>>>>>
>>>>> Hans Johnson (21):
>>>>> COMP: Remove unnecessary BORLAND code
>>>>> COMP: Make type conversions explicit/consistent
>>>>> PERF: Optimize loop index computations
>>>>> COMP: Remove unnecessary BORLAND code
>>>>> COMP: Incomplete variable name change.
>>>>> COMP: Incorrect warning presented for cppcheck
>>>>> STYLE: The FFTW libs should be co-located with ITK
>>>>> COMP: Fix robustness of DCMTK internal builds
>>>>> ENH: Get function accessible from const objects
>>>>> COMP: Missing patch for ITK_FUTURE_LEGACY_REMOVE
>>>>> STYLE: Reduce redundant code identified by cpd
>>>>> BUG: Return a modifiable object or provide const
>>>>> STYLE: Improve SoftwareGuide documentation
>>>>> COMP: Type mis-match for comparison operator
>>>>> STYLE: Enforce using ITK macros when available
>>>>> COMP: Type mis-match for comparison operator
>>>>> BUG: ITK_FUTURE_LEGACY_REMOVE must cmake configured
>>>>> BUG: Expose BSplineInterpolateImageFunction test
>>>>> COMP: Linkage ITK_ABI_EXPORT to ITKCommon_EXPORT
>>>>> BUG: itk_tiff.h should not be in itkTIFFImageIO.h
>>>>> DOC: Fix line length issues for the SoftwareGuide
>>>>>
>>>>> Ho Cheung (7):
>>>>> BUG: GradientVectorFlow should calculate timestep based on
>>>>> image dimension
>>>>> STYLE: GradientVectorFlow - Add const correctness
>>>>> STYLE: GradientVectorFlow
>>>>> PERF: GradientVectorFlow - Remove redundant initializations
>>>>> BUG: itkPolyLineParametricPath infinite loop for degenerate
>>>>> paths
>>>>> BUG: Fix ITK Path test failures
>>>>> BUG: ITK unable to detect number of threads under Unix in
>>>>> recent glibc.
>>>>>
>>>>> ITK Migration V4 (4):
>>>>> DOC: Modify ContourMeanDistanceImageFilter comments.
>>>>> DOC: Modify MattesMutualInformationImageToImageMetric comments.
>>>>> DOC: Modify MaskImageFilter comments.
>>>>> DOC: Modify BSplineTransformInitializer comments.
>>>>>
>>>>> Jan Margeta (1):
>>>>> COMP: Added missing header <functional> in
>>>>> itkAnchorCloseImageFilter.h
>>>>>
>>>>> Julien Finet (2):
>>>>> ENH: Add unit test to itkThresholdImageFilterTest
>>>>> ENH: Add MaskingValue to MaskImageFilter
>>>>>
>>>>> Julien Malik (2):
>>>>> BUG: Remove itkLoad definition in JPEG2000ImageIOFactory
>>>>> ENH: Add missing NumericTraits for complex
>>>>>
>>>>> Julien Michel (2):
>>>>> BUG: Fix InverseDisplacementFieldImageFilter bug
>>>>> BUG: Fix InverseDisplacementFieldImageFilter bug
>>>>>
>>>>> Kent Williams (21):
>>>>> COMP: Turn on -fpic in options for DCMTK External Project
>>>>> BUG: using InputPixelType to hold label count can overflow.
>>>>> COMP: Update DCMTK version to incorporate new fixes.
>>>>> COMP: Use portable method to find source dir & find DCMTK
>>>>> headers
>>>>> COMP: Start using ITKConsortium github to retrieve DCMTK.
>>>>> BUG: Regressions with respect to building DCMTK
>>>>> COMP: Added patch from Dirk Padfield
>>>>> ENH: use find_package(DCMTK NO_MODULE)
>>>>> ENH: Add double-conversion library for precise Float output
>>>>> COMP: replace in-line access methods with itk Macros
>>>>> COMP: The install path for DoubleConversion lib was wrong.
>>>>> COMP: removed warnings on Windows due to generic vs excp obj
>>>>> throw.
>>>>> COMP: check for this == &rhs as much as possible.
>>>>> COMP: Replace memcpy with std::copy in ImportImageContainer.
>>>>> COMP: Replace memcpy calls with std::copy
>>>>> COMP: Further changes to the use of std::copy_n
>>>>> COMP: Add preprocessor symbols to double-conversion for OS X
>>>>> PPC
>>>>> COMP: Add DoubleConversion merge from upstream documentation
>>>>> BUG: Return of NaN by
>>>>> DiffusionTensor3D::GetFractionalAnisotropy
>>>>> BUG: Dicom method for Dir Cosines made non-orthogonal
>>>>> directions
>>>>> COMP: Install openjpgDllConfig.h
>>>>>
>>>>> Kris Zygmunt (1):
>>>>> PERF: Provide better default config for patch-based denoiser
>>>>>
>>>>> Luis Ibanez (1):
>>>>> ENH: Maurer for Danielsson in Surface Distance.
>>>>>
>>>>> Manuel Grizonnet (4):
>>>>> BUG: Inconsistency detected by ld.so due to static const string
>>>>> BUG: Inconsistency detected by ld.so due to static const string
>>>>> BUG: Inconsistency detected by ld.so due to static const string
>>>>> BUG: Inconsistency detected by ld.so due to static const string
>>>>>
>>>>> Marco Feuerstein (1):
>>>>> ENH: JPEG IO now writes and reads spacing, similar to the TIFF
>>>>> IO (ITK-3023)
>>>>>
>>>>> Marius Staring (3):
>>>>> ENH: expose parameter in Bilateral filter
>>>>> PERF: Replace fill and copy with std alternatives
>>>>> BUG: B-spline interpolator should use direction
>>>>>
>>>>> Mark Hiner (1):
>>>>> ENH: Add SCIFIOImageIO.
>>>>>
>>>>> Matthew McCormick (47):
>>>>> COMP: Fix wrapping configuration warnings about itkMeshBase,
>>>>> etc.
>>>>> COMP: Fix HDF5 unused function for long long on Unix.
>>>>> ENH: Bump CMake version numbers to 4.4.0.
>>>>> BUG: Remove unused metric test content link.
>>>>> COMP: Add DLL to PATH for Python tests on Visual Studio.
>>>>> BUG: Do not nullify the DCMTK ExternalProject UPDATE_COMMAND.
>>>>> BUG: Fix DCMTK lib_prefix identification.
>>>>> COMP: Fix HDF5 unused function for long long on Unix.
>>>>> BUG: Remove unused metric test content link.
>>>>> COMP: Add DLL to PATH for Python tests on Visual Studio.
>>>>> ENH: Bump CMakeLists.txt ITK version to 4.3.1.
>>>>> STYLE: Fix errors detected by KWStyleCodeTest.
>>>>> COMP: VectorIndexSelectionCastImageFilter extra itk namespace.
>>>>> STYLE: Fix alignment in itkMask{Image,Negated}ImageFilter.h
>>>>> ENH: Doxygen configuration update to 1.8.3.1.
>>>>> BUG: Fix FFTW install paths in ITKConfig.cmake (ITK-2995).
>>>>> DOC: Doxygen detection of DirectionTolerance as private.
>>>>> ENH: Get Direction and CoordinateTolerance are const methods.
>>>>> BUG: Add missing header to the third party TIFF install.
>>>>> COMP: More fixes to mesh wrapping warnings.
>>>>> BUG: Temporarily disable Python utility tests.
>>>>> COMP: Avoid explicit instantiation and specialization for
>>>>> Array.
>>>>> ENH: Add utility script to create JRE tarballs.
>>>>> ENH: Use named inputs in BinaryReconstruction filters.
>>>>> STYLE: Remove redundant itk namespace.
>>>>> DOC: CreateTestDriver srcs should have the .cxx extension.
>>>>> COMP: Must reinterpret the pointers to match
>>>>> COMP: Fix project linking against ITK that does not use
>>>>> VtkGlue.
>>>>> COMP: Fix project linking against ITK that does not use
>>>>> VtkGlue.
>>>>> BUG: Fix FFTW install paths in ITKConfig.cmake (ITK-2995).
>>>>> ENH: Bump version in CMakeLists.txt to 4.3.2.
>>>>> DOC: Doxygen expansion of itkGetModifiableObjectMacro.
>>>>> ENH: Remove unused wrapping code. ITK-3032.
>>>>> ENH: Use named inputs in BinaryReconstruction filters.
>>>>> COMP: Distance maps filters cannot wrap 1D.
>>>>> DOC: Remove reference to MeanDistanceImageFilter.
>>>>> STYLE: Fix KWStyle errors.
>>>>> STYLE: Remove entries from the old MINC2ImageIO.
>>>>> BUG: Remove MINCIO from the default registered modules.
>>>>> BUG: Add EXCLUDE_FROM_ALL to ThirdParty/MINC.
>>>>> BUG: Include SCIFIO in the auto-registered factories if the
>>>>> module
>>>>> is enabled.
>>>>> BUG: Visual Studio itkClampImageFilterTest failures.
>>>>> STYLE: itkClampImageFilter.hxx in the wrong module.
>>>>> COMP: Add _CRT_NO_SECURE_WARNINGS when building GCCXML.
>>>>> COMP: Prevent ITK_USE_64BITS_IDS with Wrapping on Windows.
>>>>> STYLE: Too many blank lines in itkCastImageFilterTest.cxx.
>>>>> COMP: Bump MINC third party to fix warnings.
>>>>>
>>>>> Nick Tustison (4):
>>>>> ENH: Adding masking capabilities with confidence mask option.
>>>>> BUG: Masks need to be warped.
>>>>> ENH: Permitting access to shrinking per dimension.
>>>>> BUG: Valgrind error.
>>>>>
>>>>> Nicolas Rey (1):
>>>>> STYLE: Minor style fixes
>>>>>
>>>>> Paul Novotny (3):
>>>>> COMP: Fix TIFF on big endian systems
>>>>> COMP: Build fails with ITK_USE_SYSTEM_TIFF
>>>>> COMP: Fix TIFF on big endian systems
>>>>>
>>>>> Prathamesh Kulkarni (1):
>>>>> COMP: QuickViewTest new baseline.
>>>>>
>>>>> Sean McBride (4):
>>>>> STYLE: fixed minor spelling: XCode -> Xcode
>>>>> COMP: fixed clang warning about NULL to bool conversion
>>>>> BUG: Handle missing Analyze 7.5 flipped directions
>>>>> COMP: Handle missing Analyze 7.5 flipped directions
>>>>>
>>>>> Tim Allman (3):
>>>>> DOC: Modify BSplineTransform comments.
>>>>> DOC: Modify
>>>>> JointHistogramMutualInformationImageToImageMetricv4 comments.
>>>>> DOC: Modify
>>>>> JointHistogramMutualInformationImageToImageMetricv4 comments.
>>>>>
>>>>> Tom Vercauteren (2):
>>>>> COMP: GPUPDEDeformableRegistrationFilter.cl fails to "compile".
>>>>> COMP: GPUPDEDeformableRegistrationFilter.cl fails to "compile".
>>>>>
>>>>> Vladimir S. FONOV (2):
>>>>> ENH: Adding libminc and updating MINC IO support.
>>>>> BUG: Making 2D Minc IO work properly
>>>>>
>>>>> Xiaoxiao Liu (2):
>>>>> ENH: Sync python scripts with python3.
>>>>> ENH: Sync python scripts with python3.
>>>>>
>>>>> Yan Xu (1):
>>>>> COMP: static cast unsigned int to int
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> Changes in ITKapps from v4.3.0-apps to v4.4.0-apps:
>>>>>
>>>>> Bill Lorensen (3):
>>>>> COMP: VTK6 API change
>>>>> ENH: Add TCL Wrapped examples
>>>>> BUG: Missing includes for ITK4.4
>>>>>
>>>>> Hans Johnson (1):
>>>>> COMP: Mac 10.8 fixes were incorporated in FLTK
>>>>>
>>>>> Jamie Snape (1):
>>>>> BUG: Propagate build, linker, and OSX settings to external
>>>>> projects
>>>>>
>>>>> Matt McCormick (6):
>>>>> COMP: Re-add the FLTK patch for some Macs.
>>>>> BUG: ITK External build only depends on VTK if being built.
>>>>> COMP: Update FLTK SVN configuration.
>>>>> ENH: Bump VTK ExternalProject to 5.10.1.
>>>>> COMP: Use FLTK zip file stored on Midas3.
>>>>> ENH: Bump ITK superbuild version to 4.4.0.
>>>>>
>>>>> Roland Kwitt (1):
>>>>> COMP: Shadowing warning in GLSliceView.h
>>>>>
>>>>> Stephen R. Aylward (1):
>>>>> COMP: Fix FLTK build error on Mac/Clang.
>>>>>
>>>>> Xiaoxiao Liu (1):
>>>>> ENH: Print out accurate image IO error message.
>>>>>
>>>>>
>>>>>
>>>>> Changes from v4.3.0 to v4.4.0 from the Jira Issue tracker:
>>>>>
>>>>> [ITK-3002] - Make itkGetObjectMacro issue compile time warnings
>>>>> [ITK-3003] - Add itkGetObjectMacro to the ITK_LEGACY_REMOVE option
>>>>> [ITK-3085] - itkBSplineExponentialImageRegistrationTest Timeout on
>>>>> RogueResearch11
>>>>> [ITK-3086] - QuickViewTest test failure on farsight-mint
>>>>> [ITK-3087] - itkLargeMetaImageWriteReadTest4 test failure on
>>>>> dash5win7x64.kitware
>>>>> [ITK-3088] - itkClampImageFilterTest test failure on lhcp-win7vm2.nlm
>>>>> Win32-VS9-Release-Shared VS10-Release-Shared
>>>>> [ITK-3089] - itkLSMImageIOTest on eldorado.kitware
>>>>> Ubuntu-g++-4.6.2-Debug
>>>>> [ITK-3090] - itkTimeVaryingVelocityFieldImageRegistrationTest test
>>>>> failure on eldorado.kitware Ubuntu-g++-4.6.2-Debug
>>>>> [ITK-3091] - itkLSMImageIOTest test failure on RogueResearch9,
>>>>> Mac10.6-gcc-rel-x86_64-static
>>>>> [ITK-3093] - itkTIFFImageIOSpacing test failure on mini0.nlm,
>>>>> MacOSX-cross-rosetta
>>>>> [ITK-3094] - itkMeshFileReadWriteTest04 test failure on mini0.nlm,
>>>>> MacOSX-cross-rosetta
>>>>> [ITK-3095] - itkMeshFileReadWriteTest02 test failure on mini0.nlm,
>>>>> MacOSX-cross-rosetta
>>>>> [ITK-3096] - itkDiscreteGaussianImageFilterTest2 test failure on
>>>>> mini0.nlm, MacOSX-cross-rosetta
>>>>>
>>>>> Bug
>>>>> [ITK-2889] - Bug in BSplineInterpolateImageFunction ?
>>>>> [ITK-2919] - Build with JOM fails to properly generate ITKTargets.cmake
>>>>> [ITK-2943] - Add migration guide related to "itkTestMain.h"
>>>>> [ITK-2975] - itk::CastImageFilter creates bad output
>>>>> [ITK-2978] - ImageSeriesFileReader MetaDataDictionary Array
>>>>> Incorrectly Handles Missing Fields
>>>>> [ITK-2983] - ITKVtkGlue not adding VTK_LIBRARIES
>>>>> [ITK-2988] - tiff name pollution
>>>>> [ITK-2989] - A factor of 1/standard_deviation is missing from the
>>>>> kernel pdf estimator in MutualInformationImageToImageMetric
>>>>> [ITK-2992] - tif_config.h is not install
>>>>> [ITK-2995] - Install tree ITKConfig.cmake is wrong for FFTW
>>>>> [ITK-3004] - Direction cosine matrix generated using the images DICOM
>>>>> tag "image orientation (patient)" or (0020,0037) is not necessarilly
>>>>> orthogonal
>>>>> [ITK-3009] - itk::InverseDisplacementFieldImageFilter does not work
>>>>> properly
>>>>> [ITK-3011] - Maurer for Danielsson in Surface Distance
>>>>> [ITK-3012] - ld error on exit when using itkBinaryErodeImageFilter and
>>>>> itkBinaryDilateImageFilter
>>>>> [ITK-3015] - Modules/IO/PhillipsREC/src/itkPhilipsPar.cxx contains
>>>>> nonsense code
>>>>> [ITK-3017] - ITK_ABI_EXPORT is used directly when ITKCommon_EXPORT
>>>>> should be used
>>>>> [ITK-3020] - ImageRegistration2D bug
>>>>> [ITK-3021] - itk::ImportImageContainer use of memcpy seen as harmful
>>>>> [ITK-3028] - BUG: B-spline interpolator should use direction
>>>>> [ITK-3064] - BSplineDeformableTransform writes out a warning every
>>>>> time a point in an image is transformed, causes memory allocation
>>>>> errors
>>>>> [ITK-3065] - TestImportImageContainer cannot handle memory reallocation
>>>>> [ITK-3066] - BSplineDeformableTransform::InsideValidRegion icm with
>>>>> even spline orders and ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY
>>>>> [ITK-3068] - Cannot resample a VectorImage
>>>>> [ITK-3069] - itkMersenneTwisterRandomVariateGenerator is not thread
>>>>> safe
>>>>> [ITK-3070] - IPLCommonImageIO fails to read GE Signa CT file series.
>>>>> [ITK-3071] - PolyLineParametricPath converges too slow
>>>>> [ITK-3072] - itkTransforms could supply a spatial Jacobian.
>>>>> [ITK-3083] - Clean Dashboard for 4.4 release
>>>>> [ITK-3118] - inconsistent behavior of all filters derived from
>>>>> itk::BinaryFunctorImageFilter
>>>>>
>>>>> Improvement
>>>>> [ITK-2896] - Add missing NumericTraits for complex
>>>>> [ITK-2940] - MaskedFFTNormalizedCorrelationImageFilter should be
>>>>> templated on MaskType
>>>>> [ITK-2964] - CMake warnings about "Perhaps should you turn on more
>>>>> WRAP_* options" not helpful.
>>>>> [ITK-2977] - itkMatrix sometimes requires extra VNL includes, leading
>>>>> to confusing linker errors
>>>>> [ITK-2980] - STYLE: Make FEM Get/Set codes use itkMacros wherever
>>>>> possible
>>>>> [ITK-2993] - Add Masking value to MaskImageFilter
>>>>> [ITK-2996] - Improve speed bilateral filter (itk::BilateralImageFilter)
>>>>> [ITK-3001] - itkGetObjectMacro pervasively hides the
>>>>> itkGetConstObjectMacro
>>>>> [ITK-3008] - Apply cppcheck to ITK
>>>>> [ITK-3016] - Allow the ClampImageFilter to use user-defined bounds
>>>>> [ITK-3073] - Const Correctness Warning
>>>>>
>>>>> New Feature
>>>>> [ITK-2985] - Get the internal transforms of the
>>>>> itkSyNImageRegistrationMethod
>>>>> [ITK-3005] - Add ITK icon to ITK wiki, doc and examples
>>>>> Task
>>>>> [ITK-2560] - Remove ITK_TEMPLATE_TXX
>>>>> [ITK-2979] - Fix doxygen documentation
>>>>> [ITK-3032] - Duplicate Source Code Versions of itkImagetoVTKImageFilter
>>>>>
>>>>>
>>>>>
>>>>> Enjoy ITK!
>>>>> _____________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://www.kitware.com/products/protraining.php
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>
>>>>
>>>>
>>>> _____________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://www.kitware.com/products/protraining.php
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>
>>>>
>>>
>>>
>>> --
>>> Unpaid intern in BillsBasement at noware dot com
>>>
>>
>>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com
>
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