[Insight-users] Weird behavior fo itk::Image<>::RegionType
Gabriel Santiago
santiago.eletrica at gmail.com
Wed Aug 21 07:55:29 EDT 2013
No, I am not... I am using Nsight Eclipse as editor. Could this be a
problem?
I am running on the lattest update of Linux...
On 20 August 2013 22:05, Ho Cheung <hocheung20 at gmail.com> wrote:
> That code compiles for me on exactly the same platform as you have
> mentioned. Are you embedding this in a larger piece of code?
>
> hocheung20 at hocheung20-VirtualBox:~/ITK-RegionType/bin$ lsb_release -a
> No LSB modules are available.
> Distributor ID: Ubuntu
> Description: Ubuntu 12.04.2 LTS
> Release: 12.04
> Codename: precise
> hocheung20 at hocheung20-VirtualBox:~/ITK-RegionType/bin$ gcc -v
> Using built-in specs.
> COLLECT_GCC=gcc
> COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper
> Target: x86_64-linux-gnu
> Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro
> 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs
> --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr
> --program-suffix=-4.6 --enable-shared --enable-linker-build-id
> --with-system-zlib --libexecdir=/usr/lib --without-included-gettext
> --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6
> --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
> --enable-libstdcxx-debug --enable-libstdcxx-time=yes
> --enable-gnu-unique-object --enable-plugin --enable-objc-gc
> --disable-werror --with-arch-32=i686 --with-tune=generic
> --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
> --target=x86_64-linux-gnu
> Thread model: posix
> gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
> hocheung20 at hocheung20-VirtualBox:~/ITK-RegionType/bin$ make -j12
> [100%] Built target itk_region_type
> hocheung20 at hocheung20-VirtualBox:~/ITK-RegionType/bin$
>
>
> Ho Cheung
> hocheung20 at gmail.com
> Cell: (775) 388-2368
>
>
> On Mon, Aug 19, 2013 at 7:30 AM, Gabriel Santiago <
> santiago.eletrica at gmail.com> wrote:
>
>> Hello,
>>
>> Thank you for your reply!
>>
>> I am using Linux (Ubuntu 12.04) and gcc version 4.6.3 and Insight Toolkit
>> 4.2.1.
>>
>> Thanks,
>>
>>
>>
>> On 16 August 2013 17:57, Ho Cheung <hocheung20 at gmail.com> wrote:
>>
>>> Hi Gabriel,
>>>
>>> Could you describe your platform more?
>>>
>>> Windows? Mac? Linux?
>>> Compiler version(s)?
>>>
>>> Thanks,
>>>
>>> Ho Cheung
>>>
>>> On Aug 16, 2013, at 3:29 PM, Gabriel Santiago <
>>> santiago.eletrica at gmail.com> wrote:
>>>
>>> Could be an ITK version problem? It doens't work for me no matter what I
>>> do!
>>>
>>>
>>> On 16 August 2013 17:26, Matt McCormick <matt.mccormick at kitware.com>wrote:
>>>
>>>> Hi Gabriel,
>>>>
>>>> Your program compiles for me.
>>>>
>>>> HTH,
>>>> Matt
>>>>
>>>>
>>>> On Fri, Aug 16, 2013 at 7:45 PM, Gabriel Santiago <
>>>> santiago.eletrica at gmail.com> wrote:
>>>>
>>>>> The weirdest thing is, if I replace the variables *
>>>>> desiredRegion.SetSize(size)* and* desiredRegion.SetIndex(start)*inside for
>>>>> * **desiredRegion.SetSize(inputRegion.GetSize()*) and *
>>>>> desiredRegion.SetIndex(**inputRegion.GetIndex()*) respectively, it
>>>>> doesn't appear the error message and the program compiles just fine.
>>>>>
>>>>>
>>>>>
>>>>> On 16 August 2013 16:32, Gabriel Santiago <santiago.eletrica at gmail.com
>>>>> > wrote:
>>>>>
>>>>>> Sorry, but where you read
>>>>>>
>>>>>>
>>>>>> *typedef itk::Image<InputAnalyzeImage, 3> Image3D;
>>>>>> *
>>>>>> *typedef itk::Image<OutputJPGImage, 2> Image2D;*
>>>>>>
>>>>>> Please, read
>>>>>>
>>>>>> *typedef itk::Image<InputImage, 3> Image3D;
>>>>>> *
>>>>>> *typedef itk::Image<OutputImage, 2> Image2D;*
>>>>>>
>>>>>> and
>>>>>>
>>>>>>
>>>>>> *typedef itk::ImageFileReader<**Analyze3DImage> Reader3D;
>>>>>> typedef itk::ImageFileWriter<**JPG2DImage> Writer2D;
>>>>>>
>>>>>> *
>>>>>> read*
>>>>>> *
>>>>>>
>>>>>> *typedef itk::ImageFileReader<**Image3D> Reader3D;
>>>>>> typedef itk::ImageFileWriter<Image2D**> Writer2D;*
>>>>>>
>>>>>> Thanks,
>>>>>>
>>>>>>
>>>>>>
>>>>>> On 16 August 2013 16:26, Gabriel Santiago <
>>>>>> santiago.eletrica at gmail.com> wrote:
>>>>>>
>>>>>>>
>>>>>>> Here it is:
>>>>>>> *
>>>>>>> // STD libraries:
>>>>>>> #include <iostream>
>>>>>>> #include <string>
>>>>>>> // ITK libraries:
>>>>>>> #include "itkImage.h"
>>>>>>> #include "itkImageFileReader.h"
>>>>>>> #include "itkImageFileWriter.h"
>>>>>>> #include "itkExtractImageFilter.h"
>>>>>>> #include "itkAnalyzeImageIO.h"
>>>>>>> #include "itkOrientImageFilter.h"
>>>>>>> #include "itkSize.h"
>>>>>>>
>>>>>>> *
>>>>>>> *// Type def.
>>>>>>> *
>>>>>>> *typedef unsigned char InputImage;
>>>>>>> typedef unsigned char OutputImage;
>>>>>>>
>>>>>>> // Image def.::
>>>>>>>
>>>>>>> typedef itk::Image<InputAnalyzeImage, 3> Image3D;
>>>>>>> typedef itk::Image<OutputJPGImage, 2> Image2D;
>>>>>>>
>>>>>>> typedef itk::ImageFileReader<**Analyze3DImage> Reader3D;
>>>>>>> typedef itk::ImageFileWriter<**JPG2DImage> Writer2D;
>>>>>>> typedef itk::ExtractImageFilter<**Image3D, Image2D> Filter3D;
>>>>>>>
>>>>>>> Image2D::Pointer extract2DSlice(Image3D::**Pointer buffer, int
>>>>>>> plane, int slice)
>>>>>>> {
>>>>>>> Filter3D::Pointer filter = Filter3D::New();
>>>>>>> Image3D::RegionType inputRegion = buffer->**
>>>>>>> GetLargestPossibleRegion();
>>>>>>>
>>>>>>>
>>>>>>> Image3D::SizeType size = inputRegion.GetSize();
>>>>>>> size[plane] = 0;
>>>>>>> Image3D::IndexType start = inputRegion.GetIndex();
>>>>>>> const unsigned int sliceNumber = slice;
>>>>>>> start[plane] = sliceNumber;
>>>>>>>
>>>>>>> *
>>>>>>> * // The problem is HERE!
>>>>>>> *
>>>>>>> *
>>>>>>> Image3D::RegionType desiredRegion;
>>>>>>> desiredRegion.SetSize(size);
>>>>>>> desiredRegion.SetIndex(start);
>>>>>>>
>>>>>>> filter->SetExtractionRegion(**desiredRegion);
>>>>>>> filter->SetInput(buffer);
>>>>>>>
>>>>>>> Image2D::Pointer img = filter->GetOutput();
>>>>>>> return img;
>>>>>>> }*
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On 16 August 2013 16:21, Bill Lorensen <bill.lorensen at gmail.com>wrote:
>>>>>>>
>>>>>>>> If you post a small, minimal example that with all includes,
>>>>>>>> perhaps we can help.
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Fri, Aug 16, 2013 at 3:17 PM, Gabriel Santiago <
>>>>>>>> santiago.eletrica at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> Dear all,
>>>>>>>>>
>>>>>>>>> I am trying to reproduce the example of page 118, of the
>>>>>>>>> itkSoftwareGuide, changing
>>>>>>>>>
>>>>>>>>> *typedef itk::ImageMaskSpatialObject<3> ImageMaskSpatialObject;*
>>>>>>>>>
>>>>>>>>> to
>>>>>>>>>
>>>>>>>>> *typedef itk::Image<InputAnalyzeImage, 3> Image3D;*
>>>>>>>>>
>>>>>>>>> I think it should work, but when I come to the following lines
>>>>>>>>>
>>>>>>>>> * Image3D::SizeType size = inputRegion.GetSize();
>>>>>>>>> size[plane] = 0;
>>>>>>>>> Image3D::IndexType start = inputRegion.GetIndex();
>>>>>>>>> const unsigned int sliceNumber = slice;
>>>>>>>>> start[plane] = sliceNumber;
>>>>>>>>>
>>>>>>>>> Image3D::RegionType desiredRegion;
>>>>>>>>> desiredRegion.SetSize(size);
>>>>>>>>> desiredRegion.SetIndex(start);*
>>>>>>>>>
>>>>>>>>> I am getting the following error messages:
>>>>>>>>>
>>>>>>>>> *Invalid argumentes:
>>>>>>>>> *
>>>>>>>>> *Candidates are:
>>>>>>>>> *
>>>>>>>>> *void SetSize(const itk::Size<<unknown>>&) and
>>>>>>>>> void SetSize(unsigned long int, unsigned long int)
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Invalid argumentes:
>>>>>>>>> Candidates are:
>>>>>>>>> void SetIndex(const itk::Index<<unknown>>&) and
>>>>>>>>> void SetIndex(unsigned long int, unsigned long int)
>>>>>>>>> *
>>>>>>>>>
>>>>>>>>> Can anyone, please, help me? I am using itk v4.2.
>>>>>>>>> What is going on?
>>>>>>>>>
>>>>>>>>> Thanks in advance,
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> Gabriel Santiago
>>>>>>>>>
>>>>>>>>> ~"As long as I live so long do I learn"~
>>>>>>>>> Ramakhrishna
>>>>>>>>>
>>>>>>>>> _____________________________________
>>>>>>>>> Powered by www.kitware.com
>>>>>>>>>
>>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>>
>>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>>>>
>>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>>
>>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Unpaid intern in BillsBasement at noware dot com
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Gabriel Santiago
>>>>>>> Engenheiro de Computação - Serviço de Informática/ Hospital das
>>>>>>> Clínicas de São Paulo
>>>>>>> santiago.eletrica at gmail.com
>>>>>>> Cel.: +55 11 99801-0881
>>>>>>>
>>>>>>>
>>>>>>> ~"As long as I live so long do I learn"~
>>>>>>> Ramakhrishna
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Gabriel Santiago
>>>>>>
>>>>>> ~"As long as I live so long do I learn"~
>>>>>> Ramakhrishna
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Gabriel Santiago
>>>>>
>>>>> ~"As long as I live so long do I learn"~
>>>>> Ramakhrishna
>>>>>
>>>>> _____________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://www.kitware.com/products/protraining.php
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>
>>>>>
>>>>
>>>
>>>
>>> --
>>> Gabriel Santiago
>>>
>>> ~"As long as I live so long do I learn"~
>>> Ramakhrishna
>>> _____________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://www.kitware.com/products/protraining.php
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://www.itk.org/mailman/listinfo/insight-users
>>>
>>>
>>>
>>
>>
>> --
>> Gabriel Santiago
>>
>> ~"As long as I live so long do I learn"~
>> Ramakhrishna
>>
>
>
--
Gabriel Santiago
~"As long as I live so long do I learn"~
Ramakhrishna
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.itk.org/pipermail/insight-users/attachments/20130821/6c5a6af3/attachment-0001.htm>
More information about the Insight-users
mailing list