[Insight-users] 3D Reconstruction from 2D slices

[Cory Quammen]

Do you really need to program with ITK and VTK for your project? If
not, might I suggest using a program called Fiji (ImageJ with a set of
instructions) to read in your image series and export it as a 3D image
file in nrrd format, then load this 3D image file in ParaView for
visualization.

Fiji is available here: http://fiji.sc/

Relevant documentation for loading an image series in ImageJ/Fiji is
available here:
http://rsbweb.nih.gov/ij/docs/guide/146-26.html#toc-Subsection-26.6

ParaView is available at http://www.paraview.org

Hope that helps,
Cory

On Fri, Oct 26, 2012 at 10:45 AM, sidou_3D <draoua.ahmed at gmail.com> wrote:
> the problem is that I can not do it, I am a beginner
> and I do not know what to mention in the following parameter:
> pattern   firstSliceValue   lastSliceValue   outputImageFile
>
> eg: in  firstSliceValue   I must mention the number of the first image ??
>
>
>
>
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-- 
Cory Quammen
Research Associate
Department of Computer Science
The University of North Carolina at Chapel Hill