[Insight-users] Problems with Image Read In

[Curtis Rueden]

Hi Adrian,

I am very sorry that you never received a reply to this message. Although I
am subscribed to the ITK users list, I do not read it carefully due to the
heavy traffic, and so missed this message until now.

If you are still interested in the Bio-Formats ITK plugin, and still having
problems, please feel free to send a mail to the ome-users mailing list (
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users/), which is
the best place to receive support for Bio-Formats.

Regards,
Curtis


On Fri, Oct 7, 2011 at 10:53 AM, Adrian Friebel Work <
friebel at izbi.uni-leipzig.de> wrote:

> Hi,
> I have some problems using the BioFormats Plugin. I want to read in .oib
> or .ome.tiff files with three or more (colour) channels.
> I got the BioFormats Plugin working, I can see some of the metadata and I
> can pass the Image to VTK and render it.
> However, when I read in the test.oib /ome.tiff file (dimension order is
> XYCZT with three Channels) with an itk::ImageFileReader<**VectorImageType>
> VectorReaderType ( itk::Vector<float, 3> VectorPixelType;
> itk::Image<VectorPixelType, 2> VectorImageType; ) the information in a
> pixel is for all three channels the same.
> Seemingly, the three-channel-image is converted into a greyscale-image and
> the three vector dimensions are filled with the greyscale images.
>
> Am I doing something wrong? How can I read in e.g. an .ome.tiff file with
> x channels into an VectorImage templated over a vector of dimensionality x?
>
>
> Thanks in advance,
> Adrian.
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