[Insight-users] ITK V4.0.0 with Python Wrapping

[Mathieu Stumpf]

Le mercredi 08 février 2012 à 17:54 +0100, Gaëtan Lehmann a écrit :
> Look at /etc/ld.so.conf and maybe /etc/ld.so.conf.d/*
> 
> All the default library path should be listed there.
> 
> Regards,
> 
> Gaëtan
> 

It seems ok :
        $ cat /etc/ld.so.conf /etc/ld.so.conf.d/*
        include /etc/ld.so.conf.d/*.conf
        
        # libc default configuration
        /usr/local/lib
        # Multiarch support
        /lib/x86_64-linux-gnu
        /usr/lib/x86_64-linux-gnu
        
Now I tried again with the git version, but the result seems the same.

My env :
        export ITKWRAPPEDINSTALLED=/usr/local/lib/cmake/ITK-4.1/WrapITK/
        export LD_LIBRARY_PATH=$ITKWRAPPEDINSTALLED:$ITKWRAPPEDINSTALLED/WrapITK/lib:/usr/local/lib/vtk-5.8/
        export PYTHONPATH=$ITKWRAPPEDINSTALLED/WrapITK/lib/:$ITKWRAPPEDINSTALLED/WrapITK/Python/

What is in the dir :
        $ ls /usr/local/lib/cmake/ITK-4.1/WrapITK/
        Configuration  WrapITKConfig.cmake

Script to test :
        $ cat 0tuto.py 
        #!/usr/bin/python
        import itk
        reader1 = itk.ImageFileReader.IUC2.New(FileName="CellsFluorescence1.png")
        image1  = reader1.GetOutput()

Result :
        $ ./0tuto.py 
        PySwigIterator not found in module ITKPyBase because of exception:
         'module' object has no attribute 'PySwigIterator'
        PySwigIterator not found in module ITKPyBase because of exception:
         'module' object has no attribute 'PySwigIterator'
        Traceback (most recent call last):
          File "./0tuto.py", line 6, in <module>
            reader1 = itk.ImageFileReader.IUC2.New(FileName="CellsFluorescence1.png")
          File "/usr/local/lib/ITK-4.1/Python/itkLazy.py", line 37, in __getattribute__
            itkBase.LoadModule(module, namespace)
          File "/usr/local/lib/ITK-4.1/Python/itkBase.py", line 95, in LoadModule
            LoadModule(dep, namespace)
          File "/usr/local/lib/ITK-4.1/Python/itkBase.py", line 103, in LoadModule
            if not swigModuleName in sys.modules: module = loader.load(swigModuleName)
          File "/usr/local/lib/ITK-4.1/Python/itkBase.py", line 214, in load
            return imp.load_module(name, fp, pathname, description)
          File "/usr/local/lib/ITK-4.1/Python/ITKCommonPython.py", line 30, in <module>
            _ITKCommonPython = swig_import_helper()
          File "/usr/local/lib/ITK-4.1/Python/ITKCommonPython.py", line 26, in swig_import_helper
            _mod = imp.load_module('_ITKCommonPython', fp, pathname, description)
        ImportError: libitksys-4.1.so.1: cannot open shared object file: No such file or directory


I welcome any other idea.

Kind regards,
Mathieu