[Insight-users] Problem cross-compiling ITK 4.2.1 for MX53 (Ed Menard) [SOLVED]

[Ed Menard]

Hi Brad,

Yes, the error reported was related to the xxx64 methods...
I pulled tag 4.3rc04 and it got past that problem.
Unfortunately, a new problem appeared:

...
[ 87%] Building CXX object
Modules/IO/HDF5/test/CMakeFiles/ITKIOHDF5TestDriver.dir/itkHDF5ImageIOStreamingReadWriteTest.cxx.o
In file included from
/home/lucid/InsightToolkit-4.3rc04/Modules/IO/ImageBase/include/itkImageFileReader.h:195,
                 from
/home/lucid/InsightToolkit-4.3rc04/Modules/IO/ImageBase/include/itkIOTestHelper.h:24,
                 from
/home/lucid/InsightToolkit-4.3rc04/Modules/IO/HDF5/test/itkHDF5ImageIOStreamingReadWriteTest.cxx:19:
/home/lucid/InsightToolkit-4.3rc04/Modules/IO/ImageBase/include/itkImageFileReader.hxx:
In member function 'void itk::ImageFileReader<TOutputImage,
ConvertPixelTraits>::GenerateData() [with TOutputImage = itk::Image<float,
3u>, ConvertPixelTraits = itk::DefaultConvertPixelTraits<float>]':
/home/lucid/InsightToolkit-4.3rc04/Modules/IO/HDF5/test/itkHDF5ImageIOStreamingReadWriteTest.cxx:134:
instantiated from here
/home/lucid/InsightToolkit-4.3rc04/Modules/IO/ImageBase/include/itkImageFileReader.hxx:437:
warning: cast from 'char*' to 'const float*' increases required alignment
of target type
/home/lucid/InsightToolkit-4.3rc04/Modules/IO/ImageBase/include/itkImageFileReader.hxx:437:
warning: cast from 'char*' to 'const float*' increases required alignment
of target type
At global scope:
cc1plus: warning: unrecognized command line option "-Wno-long-double"
Linking CXX executable ../../../../bin/ITKIOHDF5TestDriver
../../../../lib/libitkhdf5-4.3.a(H5.c.o): In function `H5check_version':
H5.c:(.text+0x2b4): undefined reference to `H5libhdf5_settings'
../../../../lib/libitkhdf5-4.3.a(H5T.c.o): In function `H5T_init_interface':
H5T.c:(.text+0x13b8): undefined reference to `H5TN_init_interface'
collect2: ld returned 1 exit status
make[2]: *** [bin/ITKIOHDF5TestDriver] Error 1
make[1]: *** [Modules/IO/HDF5/test/CMakeFiles/ITKIOHDF5TestDriver.dir/all]
Error 2
make: *** [all] Error 2
lucid at ubuntu:~/ITK-MX53-4.3rc04$

--Ed

On Mon, Dec 10, 2012 at 11:56 AM, Bradley Lowekamp
<blowekamp at mail.nih.gov>wrote:

> I think that the following patch which has been included in the 4.3
> release candidate should address the problem:
>
>
> https://github.com/Kitware/ITK/commit/8e802e50259e4bd92e4ad761e434d46c639ab70d
>
> Was the error reported related to the methods modified above not being
> available?
>
> Brad
>
> On Dec 10, 2012, at 1:45 PM, Ed Menard <emenard at nvs-technologies.com>
> wrote:
>
> Hi Vladmir,
>
> Thanks for pointing me in the right direction...
> Setting ITK_USE_SYSTEM_TIFF to ON did help, but then I found that the TIFF
> library built for my target system was an older version, and ITK still
> wouldn't compile...
>
> No time at the moment to update/rebuild my cross-environment, so I dropped
> back to ITK 3.20.1, and that compiled successfully (with
> ITK_USE_SYSTEM_TIFF)...
>
> Thanks for your help!
> --Ed
>
> On Sun, Dec 9, 2012 at 9:20 AM, Vladimir S. FONOV <
> vladimir.fonov at gmail.com> wrote:
>
>> Hello,
>>
>> the problem comes from the fact that ITK bundles lib tiff  library source
>> in Modules/ThirdParty/TIFF/src , which builds a binary program (
>> itkmkg3states from mkg3states.c) which is used to generate the source
>> of tif_fax3sm.c
>>
>> In case of cross-platform build it means that Cmake have to figure out
>> that itkmkg3states have to be build using your host compiler and not
>>  cross-compiler (i.e building a binary for intel instead for arm).
>>
>> You can probably get around it by using libtiff which comes with iMX
>> build environment ( set ITK_USE_SYSTEM_TIFF to ON)
>>
>> On 2012-12-09, at 12:00 PM, insight-users-request at itk.org wrote:
>>
>> Here are the steps I performed:
>> - Created an empty directory (ITK-MX53-4.2.1), peer with the sources
>> (InsightToolkit-4.2.1)
>> - Created a ToolChain-MX53.cmake file (including setting CMAKE_SYSTEM_NAME
>> to Linux and other settings)
>> - Copied ToolChain-MX53.cmake to ITK-MX53-4.2.1
>> - From ITK-MX53-4.2.1 ran: cmake
>> -DCMAKE_TOOLCHAIN_FILE=./Toolchain-MX53.cmake ../InsightToolkit-4.2.1
>> - Copied the generated cmTryCompileExecXxx files to the target and ran
>> them,
>> and then copied TryRunResults.cmake to TryRunResults-MX53.cmake and
>> updated
>> with the obtained results
>> - From ITK-MX53-4.2.1 ran: cmake -C ./TryRunResults-MX53.cmake
>> ../InsightToolkit-4.2.1
>> - Ran make
>>
>>
>>  ---
>> Best regards,
>>
>> Vladimir S. FONOV
>>
>>
>>
>>
>>
>>
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>
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