[Insight-users] SimpleITK: Fatal Python error on import

[Bradley Lowekamp]

Hello Andriy,

I was able to successfully configure, build and test SimpleITK with EPDFree7.1. I posted more details under your created JIRA issue.

The tricky part is setting the advanced CMake variables for the EPD's version of python I had to set the following under ccmake's advanced settings:

PYTHON_EXECUTABLE=/Library/Frameworks/Python.framework/Versions/7.1/bin/python
PYTHON_INCLUDE_DIR=/Library/Frameworks/Python.framework/Versions/7.1/Headers
PYTHON_LIBRARY=/Library/Frameworks/Python.framework/Versions/7.1/lib/libpython2.7.dylib


Hope this helps,
Brad

On Oct 19, 2011, at 5:43 PM, Andriy Fedorov wrote:


> Thanks, Matt. An issue has been created here:
> https://itk.icts.uiowa.edu/jira/browse/SIMPLEITK-198
> 
> On Wed, Oct 19, 2011 at 12:52 PM, Matt McCormick
> <matt.mccormick at kitware.com> wrote:
>> Hi Andriy,
>> 
>> Thanks for the report.  An issue can be created here:
>> 
>> https://itk.icts.uiowa.edu/jira/browse/SIMPLEITK
>> 
>> Thanks,
>> Matt
>> 
>> 
>> 
>> On Wed, Oct 19, 2011 at 12:39 PM, Andriy Fedorov
>> <fedorov at bwh.harvard.edu> wrote:
>>> Hi,
>>> 
>>> I compiled SimpleITK from source, and am now trying to install it so
>>> that python can see the package. Maybe I am not doing it correctly,
>>> but I have a runtime error while trying to import the package. Any
>>> suggestions?
>>> 
>>> My system details: OSX 10.6.8 (Snow Leopard), gcc-4.2.1, python 2.7.1.
>>> Python has been installed from an Enthought distribution.
>>> 
>>> If I need to submit a bug report, can someone point me to the right
>>> location to do this? Is this regular ITK MAntis or not?
>>> 
>>> [fedorov at bear site-packages] easy_install SimpleITK-0.3.0-py2.7.egg
>>> Processing SimpleITK-0.3.0-py2.7.egg
>>> Copying SimpleITK-0.3.0-py2.7.egg to
>>> /Library/Frameworks/EPD64.framework/Versions/7.0/lib/python2.7/site-packages
>>> Adding SimpleITK 0.3.0 to easy-install.pth file
>>> 
>>> Installed /Library/Frameworks/EPD64.framework/Versions/7.0/lib/python2.7/site-packages/SimpleITK-0.3.0-py2.7.egg
>>> Processing dependencies for SimpleITK==0.3.0
>>> Finished processing dependencies for SimpleITK==0.3.0
>>> [fedorov at bear site-packages] ipython
>>> Enthought Python Distribution -- http://www.enthought.com
>>> 
>>> Python 2.7.1 |EPD 7.0-2 (64-bit)| (r271:86832, Dec  3 2010, 15:56:20)
>>> Type "copyright", "credits" or "license" for more information.
>>> 
>>> IPython 0.10.1 -- An enhanced Interactive Python.
>>> ?         -> Introduction and overview of IPython's features.
>>> %quickref -> Quick reference.
>>> help      -> Python's own help system.
>>> object?   -> Details about 'object'. ?object also works, ?? prints more.
>>> 
>>> In [1]: import SimpleITK
>>> Fatal Python error: PyThreadState_Get: no current thread
>>> Abort trap
>>> 
>>> 
>>> --
>>> Andriy Fedorov, Ph.D.
>>> 
>>> Research Fellow
>>> Brigham and Women's Hospital
>>> Harvard Medical School
>>> 75 Francis Street
>>> Boston, MA 02115 USA
>>> fedorov at bwh.harvard.edu
>>> (617) 525-6258 (office)
>>> _____________________________________
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>> 
> _____________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.html
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
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========================================================
Bradley Lowekamp  
Medical Science and Computing for
Office of High Performance Computing and Communications
National Library of Medicine 
blowekamp at mail.nih.gov



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