[Insight-users] Problems with Image Read In

Adrian Friebel Work friebel at izbi.uni-leipzig.de
Fri Oct 7 11:53:24 EDT 2011


Hi,
I have some problems using the BioFormats Plugin. I want to read in .oib 
or .ome.tiff files with three or more (colour) channels.
I got the BioFormats Plugin working, I can see some of the metadata and 
I can pass the Image to VTK and render it.
However, when I read in the test.oib /ome.tiff file (dimension order is 
XYCZT with three Channels) with an itk::ImageFileReader<VectorImageType> 
VectorReaderType ( itk::Vector<float, 3> VectorPixelType; 
itk::Image<VectorPixelType, 2> VectorImageType; ) the information in a 
pixel is for all three channels the same.
Seemingly, the three-channel-image is converted into a greyscale-image 
and the three vector dimensions are filled with the greyscale images.

Am I doing something wrong? How can I read in e.g. an .ome.tiff file 
with x channels into an VectorImage templated over a vector of 
dimensionality x?


Thanks in advance,
Adrian.


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