[Insight-users] Problem when running wiki example ITK/Examples/IO/ImageFileReader

Fri Jun 3 11:46:18 EDT 2011

Bill,

Thanks for trying it.

Am I missing anything obvious?

I've got ITK_AUTOLOAD_PATH set, and DYLD_LIBRARY_PATH set for good
measure. Adding the library directory to PATH doesn't help.

If I've got all the bases covered, I'll delve deeper to try to figure
out why the libraries aren't loading.

Thanks,
Cory

On Fri, Jun 3, 2011 at 11:42 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> Works for me.
>
> Looks like none of the io factories are loaded.
>
> On Fri, Jun 3, 2011 at 11:15 AM, Cory Quammen <cquammen at cs.unc.edu> wrote:
>> When running a slightly modified version of the example at
>> http://www.itk.org/Wiki/ITK/Examples/IO/ImageFileReader as
>>
>> ./ImageFileReader
>> /Users/cquammen/dev/packages/ITK/Testing/Data/Input/cthead1.bmp
>>
>> I get the error:
>>
>> terminate called after throwing an instance of 'itk::ImageFileReaderException'
>>  what():  /Users/cquammen/dev/packages/ITK/Modules/IO/Base/include/itkImageFileReader.txx:144:
>>  Could not create IO object for file
>> /Users/cquammen/dev/packages/ITK/Testing/Data/Input/cthead1.bmp
>>  Tried to create one of the following:
>>  You probably failed to set a file suffix, or
>>    set the suffix to an unsupported type.
>>
>>
>>
>> The exact code I am running is:
>>
>> #include "itkImage.h"
>> #include "itkImageFileReader.h"
>>
>> //#include "QuickView.h"
>>
>> int main(int argc, char *argv[])
>> {
>>  if( argc < 2 )
>>    {
>>    std::cerr << "Usage: " << std::endl;
>>    std::cerr << argv[0] << " inputImageFile" << std::endl;
>>    return EXIT_FAILURE;
>>    }
>>
>>  typedef itk::Image< double, 2 >         ImageType;
>>  typedef itk::ImageFileReader<ImageType> ReaderType;
>>
>>  ReaderType::Pointer reader = ReaderType::New();
>>  reader->SetFileName(argv[1]);
>>  reader->Update();
>>
>>  //QuickView viewer;
>>  //viewer.AddImage<ImageType>(reader->GetOutput());
>>  //viewer.Visualize();
>>
>>  return EXIT_SUCCESS;
>> }
>>
>>
>>
>> I am compiling the example against a recent git repository version of ITK:
>>
>> commit cd5aba8402fe36654fb457e23a3161fc2fd3a1eb
>> Merge: 723e12d 213d010
>> Author: Brad King <brad.king at kitware.com>
>> Date:   Wed Jun 1 13:01:11 2011 -0400
>>
>> System: Mac OS X 10.6.6
>> Compiler:
>> i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5664)
>> Copyright (C) 2007 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.  There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>>
>>
>>
>> I've compiled ITK with the following non-default options:
>>
>> BUILD_TESTING=OFF
>> CMAKE_BUILD_TYPE=Debug
>> ITK_BUILD_ALL_MODULES=ON
>>
>>
>>
>> I've set the following environment variables:
>> ITK_AUTOLOAD_PATH="/Users/cquammen/dev/build/ITK-Git-IO-Test/lib/"
>> DYLD_LIBRARY_PATH="/Users/cquammen/dev/build/ITK-Git-IO-Test/lib/"
>>
>>
>>
>> ls -1 $ITK_AUTOLOAD_PATH yields
>>
>> cmake
>> libITK-BiasCorrection-4.0.a
>> libITK-BioCell-4.0.a
>> libITK-Blox-4.0.a
>> libITK-Common-4.0.a
>> libITK-Deprecated-4.0.a
>> libITK-FEM-4.0.a
>> libITK-FFT-4.0.a
>> libITK-IO-BMP-4.0.a
>> libITK-IO-Base-4.0.a
>> libITK-IO-BioRad-4.0.a
>> libITK-IO-GDCM-4.0.a
>> libITK-IO-GE-4.0.a
>> libITK-IO-GIPL-4.0.a
>> libITK-IO-HDF5-4.0.a
>> libITK-IO-IPL-4.0.a
>> libITK-IO-JPEG-4.0.a
>> libITK-IO-LSM-4.0.a
>> libITK-IO-Meta-4.0.a
>> libITK-IO-NIFTI-4.0.a
>> libITK-IO-NRRD-4.0.a
>> libITK-IO-PNG-4.0.a
>> libITK-IO-Siemens-4.0.a
>> libITK-IO-SpatialObjects-4.0.a
>> libITK-IO-Stimulate-4.0.a
>> libITK-IO-TIFF-4.0.a
>> libITK-IO-VTK-4.0.a
>> libITK-IO-XML-4.0.a
>> libITK-KLMRegionGrowing-4.0.a
>> libITK-Mesh-4.0.a
>> libITK-Optimizers-4.0.a
>> libITK-Path-4.0.a
>> libITK-Polynomials-4.0.a
>> libITK-QuadEdgeMesh-4.0.a
>> libITK-Review-4.0.a
>> libITK-SpatialObjects-4.0.a
>> libITK-Statistics-4.0.a
>> libITK-Transform-4.0.a
>> libITK-VNLInstantiation-4.0.a
>> libITK-VTK-4.0.a
>> libITK-Watersheds-4.0.a
>> libITKDICOMParser-4.0.a
>> libITKEXPAT-4.0.a
>> libITKMetaIO-4.0.a
>> libITKNrrdIO-4.0.a
>> libITKniftiio-4.0.a
>> libITKznz-4.0.a
>> libitkNetlibSlatec-4.0.a
>> libitkgdcmCommon-4.0.a
>> libitkgdcmDICT-4.0.a
>> libitkgdcmDSED-4.0.a
>> libitkgdcmIOD-4.0.a
>> libitkgdcmMSFF-4.0.a
>> libitkgdcmjpeg12-4.0.a
>> libitkgdcmjpeg16-4.0.a
>> libitkgdcmjpeg8-4.0.a
>> libitkgdcmuuid-4.0.a
>> libitkhdf5-4.0.a
>> libitkhdf5_cpp-4.0.a
>> libitkjpeg-4.0.a
>> libitkopenjpeg-4.0.a
>> libitkpng-4.0.a
>> libitksys-4.0.a
>> libitktestlib-4.0.a
>> libitktiff-4.0.a
>> libitkv3p_lsqr-4.0.a
>> libitkv3p_netlib-4.0.a
>> libitkvcl-4.0.a
>> libitkvnl-4.0.a
>> libitkvnl_algo-4.0.a
>> libitkzlib-4.0.a
>>
>>
>> This should be a piece of cake to get to run. What am I missing?
>>
>> By the way, in a different build of the same ITK source file with
>> BUILD_TESTING on, ITK tests that read images work fine, so I am
>> stymied.
>>
>> Cory
>>
>> --
>> Cory Quammen
>> Computer Integrated Systems for Microscopy and Manipulation (CISMM)
>> Department of Computer Science
>> University of North Carolina at Chapel Hill
>> http://www.cs.unc.edu/~cquammen
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.html
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://www.itk.org/mailman/listinfo/insight-users
>>
>

-- 
Cory Quammen
Computer Integrated Systems for Microscopy and Manipulation (CISMM)
Department of Computer Science
University of North Carolina at Chapel Hill
http://www.cs.unc.edu/~cquammen