[Insight-users] Mesh visualization

[Siddharth Srivastava]

Thanks Luis,
             Thanks a lot for your mail: the second link is really helpful
for me,
and almost exactly what i needed to get started.
              I was delayed in my reply, because since the last few days, I
have been
trying to repair a broken ITK/VTK/cmake(!) installation on my machine. I
think
I have figured things out by trial and error, and things seem to be working
for now.
However, i would like to ask a few general questions:
1) What is the best way, with an already "made" ITK , to add Review code to
the
distribution. My specific example is using itkQuadMesh* , which is in the
review section.
In any case, if i feel the need to include a specific section (as a current
example, say,
CONSOLIDATED_MORPHOLOGY), which is the most optimal way to proceed?
2) With my recent Build, what should I look for, as a check, that
ITK_USE_REVIEW has
actually added what it was supposed to add?
3)While compiling gdcm* files, I got 2 errors a) "ex" undefined, which I
corrected
by rectifying the offending line to if(Exception & ex), and b)
Attribute<0x0020, 0x0035> at = {};
I hope this does not break the code.

Thanks for all the help,
Sid.


On Tue, Sep 21, 2010 at 2:36 PM, John Drozd <john.drozd at gmail.com> wrote:

> Hi Luis,
>
> Thank you very much for carbon copying (cc'ing) me with this email.
>
> Take care,
> John
>
>
> On Mon, Sep 20, 2010 at 5:08 PM, Luis Ibanez <luis.ibanez at kitware.com>wrote:
>
>>
>> Hi Siddarth
>>
>> You may want to look at the following Insight Journal papers:
>>
>> http://www.insight-journal.org/browse/publication/687
>> http://www.insight-journal.org/browse/publication/645
>>
>> As usual, they include source code and data that makes
>> possible to reproduce the content.
>>
>> (as all Journals should do....)
>>
>>
>> You will find examples on how to visualize a mesh at
>> multiple iterations of a registration process.
>>
>> You can also find the code at:
>>
>> http://svn.na-mic.org/NAMICSandBox/trunk/QuadEdgeMeshRigidRegistration/
>>
>> http://svn.na-mic.org/NAMICSandBox/trunk/QuadEdgeMeshSphericalDiffeomorphicDemonsRegistration/
>>
>>
>>       Regards,
>>
>>
>>            Luis
>>
>>
>>
>> ----------------------------------------------------
>>
>> On Fri, Sep 17, 2010 at 4:07 PM, Siddharth Srivastava <siddys at gmail.com>wrote:
>>
>>> Hi John,
>>>      Thanks for your reply, and your code. I am currently going through
>>> it, which is
>>> better than my first iteration, because this is documented to my taste
>>> :-)
>>>       Also, another question that came to my mind is: Is is possible to
>>> get per-iteration
>>> updates of the mesh (just for a check for progression ), or such a
>>> paradigm
>>> is never a possibility in ITK ?
>>>      Thanks again,
>>>       Sid.
>>>
>>> On Fri, Sep 17, 2010 at 1:00 PM, John Drozd <john.drozd at gmail.com>wrote:
>>>
>>>> Hi again,
>>>>
>>>> Attached is my code (a modification of the examples).
>>>>
>>>> John
>>>>
>>>>
>>>> On Fri, Sep 17, 2010 at 3:46 PM, John Drozd <john.drozd at gmail.com>wrote:
>>>>
>>>>> Hi,
>>>>>
>>>>> I don't know if this is what you want but:
>>>>>
>>>>> I created my mesh object using ITK and wrote my mesh to a .vtk file
>>>>> using VTK coding and viewed the mesh in Paraview.
>>>>>
>>>>> The following links helped me considerably in achieving this:
>>>>> http://www.itk.org/pipermail/insight-users/2002-September/001154.html
>>>>>
>>>>> http://www.na-mic.org/svn/Slicer3-lib-mirrors/trunk/Insight/Testing/Code/Common/itkMeshSourceGraftOutputTest.cxx
>>>>>
>>>>> John
>>>>>
>>>>> On Fri, Sep 17, 2010 at 2:13 PM, Siddharth Srivastava <
>>>>> siddys at gmail.com> wrote:
>>>>>
>>>>>> Hi everyone,
>>>>>>      Are there any standard example codes and compiling instructions
>>>>>> that deal
>>>>>> with visualization of Mesh objects in ITK, using VTK ? Also ones that
>>>>>> can color the
>>>>>> mesh with some scalar or vector data value, that would be a great
>>>>>> help!
>>>>>>      Thanks,
>>>>>>       Sid.
>>>>>>
>>>>>>
>>>>>>
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>>>>>
>>>>
>>>
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