[Insight-users] DicomSeriesReadImageWrite2_DICOM DIRECTORY PATH ; -?

Sat May 22 10:09:28 EDT 2010

I've a doubt...what is the DICOM DIRECTORY PATH? Because I'm not sure to do what you say me....

Thanks to anyone will help me, 

I hope to hear from you soon 

Daniela

From: danysunflower at hotmail.it
To: aya.elgebeely at symbyo.com
Subject: RE: [Insight-users] DicomSeriesReadImageWrite2_Problem to read dcmSeries
Date: Thu, 20 May 2010 08:49:44 +0200

Thanks for your help but I'm not sure to have understood what you means....
I give the dicom directory path as you tell me, but the problem is the same.....

I've this output:

daniela at daniela-laptop:~/Scrivania/ITK/DCMSeries2DCMVolume/bin$ ./DCMSeries2DCMVolume /home/daniela/Scrivania/ITK/DCMSeries2DCMVolume/bin/ImagesSeries/ out.dcm 

The directory: 

/home/daniela/Scrivania/ITK/DCMSeries2DCMVolume/bin/ImagesSeries/

Contains the following DICOM Series: 

1.3.6.1.4.1.9590.100.1.1.10361484212757612641150690902115007521221242
1.3.6.1.4.1.9590.100.1.1.104958578313032336937390375850004964647.221242
1.3.6.1.4.1.9590.100.1.1.107405759313013746441001957330139037556.221242
1.3.6.1.4.1.9590.100.1.1.111061796311836621214237815451365526665.221242
1.3.6.1.4.1.9590.100.1.1.111371510912184596024463174462076619397.221242
1.3.6.1.4.1.9590.100.1.1.114003144113582087342408426350632299768.221242
1.3.6.1.4.1.9590.100.1.1.115069668012691176838860860252871104986.221242
1.3.6.1.4.1.9590.100.1.1.115863632711534221931101822980911990082.221242
1.3.6.1.4.1.9590.100.1.1.117210875213699775925905320144009158488.221242
1.3.6.1.4.1.9590.100.1.1.119305551712024551424636647733186827561.221242
1.3.6.1.4.1.9590.100.1.1.124756438512135209838077715403133762381.221242
1.3.6.1.4.1.9590.100.1.1.127100014912702946822219170800611195259.221242
1.3.6.1.4.1.9590.100.1.1.130904613712586655706082561633711854708.221242
1.3.6.1.4.1.9590.100.1.1.132789141911144680733439794193524860925.221242
1.3.6.1.4.1.9590.100.1.1.135448922813903449706317500221925740393.221242
1.3.6.1.4.1.9590.100.1.1.140381627611042300039716387174096495155.221242
1.3.6.1.4.1.9590.100.1.1.144532218413535004936604791574275013149.221242
1.3.6.1.4.1.9590.100.1.1.157221514712861930036266622811496897297.221242
1.3.6.1.4.1.9590.100.1.1.160223257112208121623193527622719890831.221242
1.3.6.1.4.1.9590.100.1.1.160403179611467061711348435733606596103.221242
1.3.6.1.4.1.9590.100.1.1.172713343612953281742615330863275523053.221242
1.3.6.1.4.1.9590.100.1.1.175656151313701326233705860102033370194.221242
1.3.6.1.4.1.9590.100.1.1.178274724111426279710183141672223558981.221242
1.3.6.1.4.1.9590.100.1.1.180637138611113043422500405051890976544.221242
1.3.6.1.4.1.9590.100.1.1.186730282911486077401357512971164367217.221242
1.3.6.1.4.1.9590.100.1.1.192259075012690719635674136851855041374.221242
1.3.6.1.4.1.9590.100.1.1.192304153912250864228390368121983284957.221242
1.3.6.1.4.1.9590.100.1.1.193484500413409104135181974303210120179.221242
1.3.6.1.4.1.9590.100.1.1.19483900012924771942041919211865262431221242
1.3.6.1.4.1.9590.100.1.1.195657872811850247602202149461524783890.221242
1.3.6.1.4.1.9590.100.1.1.201049653713350628538356901603932718942.221242
1.3.6.1.4.1.9590.100.1.1.205015200010636842101619262860733417343.221242
1.3.6.1.4.1.9590.100.1.1.205613602911200829614883654510244679940.221242
1.3.6.1.4.1.9590.100.1.1.20800626711899110105604105073231958255221242
1.3.6.1.4.1.9590.100.1.1.20872103812615579508486015223976135878221242
1.3.6.1.4.1.9590.100.1.1.21351735211271066209877047511394413712221242
1.3.6.1.4.1.9590.100.1.1.21680937212595594016257117591281029470221242
1.3.6.1.4.1.9590.100.1.1.224333664511635846134767287320129334367.221242
1.3.6.1.4.1.9590.100.1.1.233908953312421664220188089821972073086.221242
1.3.6.1.4.1.9590.100.1.1.234209099110527561139912938521609936297.221242
1.3.6.1.4.1.9590.100.1.1.23802820312794295127113987993421697158221242
1.3.6.1.4.1.9590.100.1.1.242833846613601180335659779954189495520.221242
1.3.6.1.4.1.9590.100.1.1.253032502011790636131304298292828389497.221242
1.3.6.1.4.1.9590.100.1.1.255281180411326795728207781183439084004.221242
1.3.6.1.4.1.9590.100.1.1.255989415911509155724838153234090034564.221242
1.3.6.1.4.1.9590.100.1.1.256703548713845188826113524501483688262.221242
1.3.6.1.4.1.9590.100.1.1.261066150512413035806047720024185285532.221242
1.3.6.1.4.1.9590.100.1.1.261923240410862384217601248181510658931.221242
1.3.6.1.4.1.9590.100.1.1.268721950512337394906243140334041866289.221242
1.3.6.1.4.1.9590.100.1.1.27002773911574612438101769393252839446221242
1.3.6.1.4.1.9590.100.1.1.271581633012520598328179585500147639169.221242
1.3.6.1.4.1.9590.100.1.1.275217719912817877728213459731407722928.221242
1.3.6.1.4.1.9590.100.1.1.277517900612931292311799848252902738566.221242
1.3.6.1.4.1.9590.100.1.1.284480680412612910037758074081229817663.221242
1.3.6.1.4.1.9590.100.1.1.286439761413969307524261925414149551332.221242
1.3.6.1.4.1.9590.100.1.1.291305712911989507105097837000895920840.221242
1.3.6.1.4.1.9590.100.1.1.292869497411583926927243992940115011216.221242
1.3.6.1.4.1.9590.100.1.1.294272493213528938332167299922951678306.221242
1.3.6.1.4.1.9590.100.1.1.295432048011872899929460473813532438228.221242
1.3.6.1.4.1.9590.100.1.1.296186631012571024433067314041707054768.221242
1.3.6.1.4.1.9590.100.1.1.301593916812146160820025722003626446068.221242
1.3.6.1.4.1.9590.100.1.1.308036880011475464222555219482749565972.221242
1.3.6.1.4.1.9590.100.1.1.309762793512585698333933743481155409607.221242
1.3.6.1.4.1.9590.100.1.1.31537236411798195029682792212183975425221242
1.3.6.1.4.1.9590.100.1.1.316724547212924806432666494890264926722.221242
1.3.6.1.4.1.9590.100.1.1.321890438512454846731899933613141156877.221242
1.3.6.1.4.1.9590.100.1.1.32608800911307637908833860023208140871221242
1.3.6.1.4.1.9590.100.1.1.332825116910498149003315061000401502685.221242
1.3.6.1.4.1.9590.100.1.1.336289553512762651720507229901428345498.221242
1.3.6.1.4.1.9590.100.1.1.336498562011885684504085922651903352995.221242
1.3.6.1.4.1.9590.100.1.1.346951755412774716126274441202286286506.221242
1.3.6.1.4.1.9590.100.1.1.350189582912575955717799599530933104099.221242
1.3.6.1.4.1.9590.100.1.1.36458300412833472603234234072687996430221242
1.3.6.1.4.1.9590.100.1.1.365342754013142409717392864100025245812.221242
1.3.6.1.4.1.9590.100.1.1.367343886412836272303768116671237967763.221242
1.3.6.1.4.1.9590.100.1.1.371453199410330370402071443502446155721.221242
1.3.6.1.4.1.9590.100.1.1.376711282912854756030326803280901027039.221242
1.3.6.1.4.1.9590.100.1.1.377409676713311240436009094542889703106.221242
1.3.6.1.4.1.9590.100.1.1.389316412613417667100401875470402172002.221242
1.3.6.1.4.1.9590.100.1.1.39465802511786504535533684932439600436221242
1.3.6.1.4.1.9590.100.1.1.395125695510859653039905120523042226302.221242
1.3.6.1.4.1.9590.100.1.1.398528795512731655934044154101725060478.221242
1.3.6.1.4.1.9590.100.1.1.410277870513038087706950595972147283218.221242
1.3.6.1.4.1.9590.100.1.1.412045646513052985524670655310954839349.221242
1.3.6.1.4.1.9590.100.1.1.416208511312424332830102614362027638482.221242
1.3.6.1.4.1.9590.100.1.1.42342430811558317805782007453092171394221242
1.3.6.1.4.1.9590.100.1.1.426127881212301683408269948334199655738.221242
1.3.6.1.4.1.9590.100.1.1.49241483711184470737460394433295304743221242
1.3.6.1.4.1.9590.100.1.1.49455742810565594637753660210668519682221242
1.3.6.1.4.1.9590.100.1.1.51443036613822244201683465584071455387221242
1.3.6.1.4.1.9590.100.1.1.51826236110766102523378438471747952106221242
1.3.6.1.4.1.9590.100.1.1.54586938712268267527783315552319051980221242
1.3.6.1.4.1.9590.100.1.1.55004693210536392229810791901280914507221242
1.3.6.1.4.1.9590.100.1.1.56593996213466745216522111193927304370221242
1.3.6.1.4.1.9590.100.1.1.60877224411871371822157485202711878743221242
1.3.6.1.4.1.9590.100.1.1.64322360612199230734233860122330178898221242
1.3.6.1.4.1.9590.100.1.1.66401018112950258816371047714219464939221242
1.3.6.1.4.1.9590.100.1.1.89578728812936033115031064410795050582221242

Now reading series: 

1.3.6.1.4.1.9590.100.1.1.10361484212757612641150690902115007521221242

Writing the image as 

out.dcm

Where is my error?

Regards
Daniela

Date: Thu, 20 May 2010 08:39:29 +0300
Subject: Re: [Insight-users] DicomSeriesReadImageWrite2_Problem to read dcmSeries
From: aya.elgebeely at symbyo.com
To: danysunflower at hotmail.it

Hi Daniela,
I think you should give the DicomSeries reader the dicom directory path, then it will read all .dcm files included in this DIR, not the entire dicom images path.

Regards,

On 19 May 2010 12:59, Daniela Sacchetto <danysunflower at hotmail.it> wrote:

Hi everyone!

I've a problem with DicomSeriesReadImageWrite2.
I've to read 98 .dcm US images and then save them as an only .dcm 3D image....
I'm trying to use DicomSeriesReadImageWrite2 but I've a strange result: my output image is made by only a frame!!!

I think that my program read every .dcm image as a DicomSeries and so it works only with the first...

In fact the output on my code is:
---------------------------------------------------------------------------------------
The directory: 

./ImagesSeries/

Contains the following DICOM Series: 

1.3.6.1.4.1.9590.100.1.1.10361484212757612641150690902115007521221242
1.3.6.1.4.1.9590.100.1.1.104958578313032336937390375850004964647.221242
1.3.6.1.4.1.9590.100.1.1.107405759313013746441001957330139037556.221242
1.3.6.1.4.1.9590.100.1.1.111061796311836621214237815451365526665.221242
1.3.6.1.4.1.9590.100.1.1.111371510912184596024463174462076619397.221242
1.3.6.1.4.1.9590.100.1.1.114003144113582087342408426350632299768.221242
1.3.6.1.4.1.9590.100.1.1.115069668012691176838860860252871104986.221242
1.3.6.1.4.1.9590.100.1.1.115863632711534221931101822980911990082.221242
1.3.6.1.4.1.9590.100.1.1.117210875213699775925905320144009158488.221242
1.3.6.1.4.1.9590.100.1.1.119305551712024551424636647733186827561.221242
1.3.6.1.4.1.9590.100.1.1.124756438512135209838077715403133762381.221242
1.3.6.1.4.1.9590.100.1.1.127100014912702946822219170800611195259.221242
1.3.6.1.4.1.9590.100.1.1.130904613712586655706082561633711854708.221242
1.3.6.1.4.1.9590.100.1.1.132789141911144680733439794193524860925.221242
1.3.6.1.4.1.9590.100.1.1.135448922813903449706317500221925740393.221242
1.3.6.1.4.1.9590.100.1.1.140381627611042300039716387174096495155.221242
1.3.6.1.4.1.9590.100.1.1.144532218413535004936604791574275013149.221242
1.3.6.1.4.1.9590.100.1.1.157221514712861930036266622811496897297.221242
1.3.6.1.4.1.9590.100.1.1.160223257112208121623193527622719890831.221242
1.3.6.1.4.1.9590.100.1.1.160403179611467061711348435733606596103.221242
1.3.6.1.4.1.9590.100.1.1.172713343612953281742615330863275523053.221242
1.3.6.1.4.1.9590.100.1.1.175656151313701326233705860102033370194.221242
1.3.6.1.4.1.9590.100.1.1.178274724111426279710183141672223558981.221242
1.3.6.1.4.1.9590.100.1.1.180637138611113043422500405051890976544.221242
1.3.6.1.4.1.9590.100.1.1.186730282911486077401357512971164367217.221242
1.3.6.1.4.1.9590.100.1.1.192259075012690719635674136851855041374.221242
1.3.6.1.4.1.9590.100.1.1.192304153912250864228390368121983284957.221242
1.3.6.1.4.1.9590.100.1.1.193484500413409104135181974303210120179.221242
1.3.6.1.4.1.9590.100.1.1.19483900012924771942041919211865262431221242
1.3.6.1.4.1.9590.100.1.1.195657872811850247602202149461524783890.221242
1.3.6.1.4.1.9590.100.1.1.201049653713350628538356901603932718942.221242
1.3.6.1.4.1.9590.100.1.1.205015200010636842101619262860733417343.221242
1.3.6.1.4.1.9590.100.1.1.205613602911200829614883654510244679940.221242
1.3.6.1.4.1.9590.100.1.1.20800626711899110105604105073231958255221242
1.3.6.1.4.1.9590.100.1.1.20872103812615579508486015223976135878221242
1.3.6.1.4.1.9590.100.1.1.21351735211271066209877047511394413712221242
1.3.6.1.4.1.9590.100.1.1.21680937212595594016257117591281029470221242
1.3.6.1.4.1.9590.100.1.1.224333664511635846134767287320129334367.221242
1.3.6.1.4.1.9590.100.1.1.233908953312421664220188089821972073086.221242
1.3.6.1.4.1.9590.100.1.1.234209099110527561139912938521609936297.221242
1.3.6.1.4.1.9590.100.1.1.23802820312794295127113987993421697158221242
1.3.6.1.4.1.9590.100.1.1.242833846613601180335659779954189495520.221242
1.3.6.1.4.1.9590.100.1.1.253032502011790636131304298292828389497.221242
1.3.6.1.4.1.9590.100.1.1.255281180411326795728207781183439084004.221242
1.3.6.1.4.1.9590.100.1.1.255989415911509155724838153234090034564.221242
1.3.6.1.4.1.9590.100.1.1.256703548713845188826113524501483688262.221242
1.3.6.1.4.1.9590.100.1.1.261066150512413035806047720024185285532.221242
1.3.6.1.4.1.9590.100.1.1.261923240410862384217601248181510658931.221242
1.3.6.1.4.1.9590.100.1.1.268721950512337394906243140334041866289.221242
1.3.6.1.4.1.9590.100.1.1.27002773911574612438101769393252839446221242
1.3.6.1.4.1.9590.100.1.1.271581633012520598328179585500147639169.221242
1.3.6.1.4.1.9590.100.1.1.275217719912817877728213459731407722928.221242
1.3.6.1.4.1.9590.100.1.1.277517900612931292311799848252902738566.221242
1.3.6.1.4.1.9590.100.1.1.284480680412612910037758074081229817663.221242
1.3.6.1.4.1.9590.100.1.1.286439761413969307524261925414149551332.221242
1.3.6.1.4.1.9590.100.1.1.291305712911989507105097837000895920840.221242
1.3.6.1.4.1.9590.100.1.1.292869497411583926927243992940115011216.221242
1.3.6.1.4.1.9590.100.1.1.294272493213528938332167299922951678306.221242
1.3.6.1.4.1.9590.100.1.1.295432048011872899929460473813532438228.221242
1.3.6.1.4.1.9590.100.1.1.296186631012571024433067314041707054768.221242
1.3.6.1.4.1.9590.100.1.1.301593916812146160820025722003626446068.221242
1.3.6.1.4.1.9590.100.1.1.308036880011475464222555219482749565972.221242
1.3.6.1.4.1.9590.100.1.1.309762793512585698333933743481155409607.221242
1.3.6.1.4.1.9590.100.1.1.31537236411798195029682792212183975425221242
1.3.6.1.4.1.9590.100.1.1.316724547212924806432666494890264926722.221242
1.3.6.1.4.1.9590.100.1.1.321890438512454846731899933613141156877.221242
1.3.6.1.4.1.9590.100.1.1.32608800911307637908833860023208140871221242
1.3.6.1.4.1.9590.100.1.1.332825116910498149003315061000401502685.221242
1.3.6.1.4.1.9590.100.1.1.336289553512762651720507229901428345498.221242
1.3.6.1.4.1.9590.100.1.1.336498562011885684504085922651903352995.221242
1.3.6.1.4.1.9590.100.1.1.346951755412774716126274441202286286506.221242
1.3.6.1.4.1.9590.100.1.1.350189582912575955717799599530933104099.221242
1.3.6.1.4.1.9590.100.1.1.36458300412833472603234234072687996430221242
1.3.6.1.4.1.9590.100.1.1.365342754013142409717392864100025245812.221242
1.3.6.1.4.1.9590.100.1.1.367343886412836272303768116671237967763.221242
1.3.6.1.4.1.9590.100.1.1.371453199410330370402071443502446155721.221242
1.3.6.1.4.1.9590.100.1.1.376711282912854756030326803280901027039.221242
1.3.6.1.4.1.9590.100.1.1.377409676713311240436009094542889703106.221242
1.3.6.1.4.1.9590.100.1.1.389316412613417667100401875470402172002.221242
1.3.6.1.4.1.9590.100.1.1.39465802511786504535533684932439600436221242
1.3.6.1.4.1.9590.100.1.1.395125695510859653039905120523042226302.221242
1.3.6.1.4.1.9590.100.1.1.398528795512731655934044154101725060478.221242
1.3.6.1.4.1.9590.100.1.1.410277870513038087706950595972147283218.221242
1.3.6.1.4.1.9590.100.1.1.412045646513052985524670655310954839349.221242
1.3.6.1.4.1.9590.100.1.1.416208511312424332830102614362027638482.221242
1.3.6.1.4.1.9590.100.1.1.42342430811558317805782007453092171394221242
1.3.6.1.4.1.9590.100.1.1.426127881212301683408269948334199655738.221242
1.3.6.1.4.1.9590.100.1.1.49241483711184470737460394433295304743221242
1.3.6.1.4.1.9590.100.1.1.49455742810565594637753660210668519682221242
1.3.6.1.4.1.9590.100.1.1.51443036613822244201683465584071455387221242
1.3.6.1.4.1.9590.100.1.1.51826236110766102523378438471747952106221242
1.3.6.1.4.1.9590.100.1.1.54586938712268267527783315552319051980221242
1.3.6.1.4.1.9590.100.1.1.55004693210536392229810791901280914507221242
1.3.6.1.4.1.9590.100.1.1.56593996213466745216522111193927304370221242
1.3.6.1.4.1.9590.100.1.1.60877224411871371822157485202711878743221242
1.3.6.1.4.1.9590.100.1.1.64322360612199230734233860122330178898221242
1.3.6.1.4.1.9590.100.1.1.66401018112950258816371047714219464939221242
1.3.6.1.4.1.9590.100.1.1.89578728812936033115031064410795050582221242

Now reading series: 

1.3.6.1.4.1.9590.100.1.1.10361484212757612641150690902115007521221242

Writing the image as 

out2.dcm
---------------------------------------------------------------------------------------------------------------

How can I say to my program that all the 98 dcm image are ''my series''?
I saved the 98 frames in a new fold ''ImagesSeries'' and I pass that directory to my program....

Thanks everyone
Daniela

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