[Insight-users] Fw: Insight-users] Registration!
fariba_yoo at yahoo.co.uk
fariba_yoo at yahoo.co.uk
Mon Mar 29 10:34:43 EDT 2010
----- Forwarded Message ----
From: "fariba_yoo at yahoo.co.uk" <fariba_yoo at yahoo.co.uk>
To: insight <Insight-users at itk.org>
Sent: Sun, 28 March, 2010 2:43:10
Subject: Insight-users] Registration!
Hi Luis,
Thanks for your helps. But it seems I really need extra help.
Because I could just run Hello world example!
I can't run any other examples!
I am not a programmer nor expert in windows or dos...
I studied the guides that you sended the links to me but there, I couldn't find any help in running examples with visual studio command prompt.
I need a really step by step guide for running examples.
I should tell you that I have InsightToolkit-3.16.0 and cmake 2.8 and I have installed cmake and then I build a binary folder and then I Configured and generated...
also buil_Examples and Buil_testing values are on.
then in Visual studio builded ALL_BUILD.
I have done these and there is a weeks I want to run ITK's examples but there is no clear help...
I appreciate your help.
Regards,
Fariba
________________________________
From: Luis Ibanez <luis.ibanez at kitware.com>
To: fariba_yoo at yahoo.co.uk
Cc: itk <Insight-users at itk.org>
Sent: Sat, 27 March, 2010 23:10:40
Subject: Re: [Insight-users] Registration!
Hi Fariba,
You must fist "cd" into the directory where
you built ITK. (not into the CMake directory).
Once you are in the directory where you
built ITK, you can then call:
C:\Program\ Files\CMake\ 2.6\bin\ctest -R ImageRegistration1Test -N -V
-----
The problem in your current approach is that you
are going to the CMake directory, instead of going
to the ITK binary directory.
Regards
Luis
-------------------------------------------------------------------
On Sat, Mar 27, 2010 at 5:05 PM, <fariba_yoo at yahoo.co.uk> wrote:
> Hello luis,
>
>
> I did these and the result is in the attachment, please tell me what is
> wrong?
>
> Regards,
> Fariba
>
> ________________________________
> From: Luis Ibanez <luis.ibanez at kitware.com>
> To: fariba_yoo at yahoo.co.uk
> Cc: itk <Insight-users at itk.org>
> Sent: Wed, 17 March, 2010 3:17:38
> Subject: Re: [Insight-users] Registration!
>
> Hi Fariba,
>
> It looks like you are working on Windows...
>
> That would have been an interesting piece
> of information to add to you initial email. :-)
>
>
> Are you familiar with how to use
> the command prompt in Windows ?
>
> or
>
> Do you happen to use Cygwin in your
> Windows machine ?
>
>
> In summary have to do is to open a
> command prompt from the Visual Studio
> menu that you find in the Windows Start button.
>
> Once you open that command prompt window,
> you can "cd" (change directories) until you get
> to the directory where you build ITK..
>
> At that point, you need to know the path to the
> directory where you installed CMake
>
> (typically C:\Program\ Files\CMake 2.6)
>
> Then you can invoke commands such as
>
> C:\Program\ Files\CMake\ 2.6\bin\ctest -R ImageRegistration1Test -N -V
>
>
>
> It will help you a lot to first familiarize yourself
> with the Visual Studio command prompt before
> you continue you exploration of ITK.
>
> See, for example the following tutorial
> http://www.youtube.com/watch?v=foYsmpDrYjY&feature=related
>
>
> Regards,
>
>
> Luis
>
>
> ----------------------------------------------------------------------------
> On Tue, Mar 16, 2010 at 7:43 PM, <fariba_yoo at yahoo.co.uk> wrote:
>> Hi Luis,
>>
>> Thanks for your reply, I was completely hopeless...
>> I want to give you exactly what I have done:
>> first I downloaded Insighttoolkit and Cmake,
>> then I made a folder for binary in the name of ITKBinary.
>> then I run Cmake and I made
>> BUILD_TESTING set to ON
>> BUILD_EXAMPLES set to ON
>> then I configured and generated(in the sourse I choose Insighttoolkit and
>> for binary I choose ITKBinary)
>> after configuring and generating I went to run ITKBinary.sln and it opened
>> in visual studio,
>> then I build BUILL-ALL. after building all the projects that took 1 hour
>> without any error, I wanted to run imageregistration1 there is no error
>> first but after running I attached the error file!
>> am I doing right up to now?
>>
>> now you have said that :
>> "Then, if you pick one specific example, you can
>> run it by calling ctest as:
>>
>> ctest -R ImageRegistration1Test -N -V "
>>
>> how can I do this?
>> because when I run for example imageregistration1.cxx there is cmd window
>> that says choose one of the numbers below: there are 0, 1, 2, 3
>> when I choose for example 1 it breaks!!
>>
>> Thanks for all your help, I appreciate your help :)
>>
>> Best,
>> Fariba
>>
>>
>> ________________________________
>> From: Luis Ibanez <luis.ibanez at kitware.com>
>> To: fariba_yoo at yahoo.co.uk
>> Cc: insight <Insight-users at itk.org>
>> Sent: Wed, 17 March, 2010 1:24:54
>> Subject: Re: [Insight-users] Registration!
>>
>> Hi Fariba
>>
>>
>> Welcome to ITK !
>>
>>
>> One easy way to find the parameters for running the
>> Registration examples, is to configure ITK with the
>> CMake variables:
>>
>> BUILD_TESTING set to ON
>> BUILD_EXAMPLES set to ON
>>
>> then rebuild the toolkit.
>>
>>
>> Once you have rebuild the toolkit,
>> You can go to the binary directory, go down to the
>> directory Examples/Registration and invoke "ctest".
>>
>> Something like:
>>
>> cd InsightBin
>> cd Examples/Registration
>> ctest -R ImageRegistration -N
>>
>> will give you a list of 76 tests (that are build using
>> the source code of the examples).
>>
>> Then, if you pick one specific example, you can
>> run it by calling ctest as:
>>
>> ctest -R ImageRegistration1Test -N -V
>>
>>
>> The options are
>>
>> -R regular expression (select a list of tests
>> whose names match the regular expression)
>>
>> -N : not run the tests, just list them
>>
>> -V : verbose: shows the parameters of the tests.
>>
>> So, for the command above, you will see something
>> like:
>>
>> RegistrationExamples.exe
>> --compare
>>
>> D:/src/Insight/Testing/Data/Baseline/Registration/ImageRegistration1TestPixelCentered.png
>>
>> D:/bin/InsightVS9Release/Testing/Temporary/ImageRegistration1TestPixelCentered.png
>> ImageRegistration1Test
>> D:/src/Insight/Examples/Data/BrainProtonDensitySliceBorder20.png
>> D:/src/Insight/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
>>
>> D:/bin/InsightVS9Release/Testing/Temporary/ImageRegistration1TestPixelCentered.png
>>
>> D:/bin/InsightVS9Release/Testing/Temporary/ImageRegistration1DifferenceAfterTestPixelCentered.png
>>
>> D:/bin/InsightVS9Release/Testing/Temporary/ImageRegistration1DifferenceBeforeTestPixelCentered.png
>>
>>
>> Of course, the directories in our build will be different
>> from the ones that I'm showing here from my build.
>>
>> This will give you an idea of what command line inputs
>> are expected by every example.
>>
>> Once you become familiar with the expected input
>> parameters, then you could venture to run the
>> examples with your own data as input, and to
>> modify the examples for your own purposes.
>>
>>
>>
>> Regards,
>>
>>
>> Luis
>>
>>
>> --------------------------------------------------
>> On Wed, Mar 10, 2010 at 5:46 PM, <fariba_yoo at yahoo.co.uk> wrote:
>>> Hello,
>>>
>>> I am new in ITK and I just installed the program and run the first
>>> example(Hello World!),
>>> Now I need to begin with registration and test some pictures from the
>>> examples, but in the registration chapter I couldn't find how to run
>>> registration examples...
>>> I am waiting for your suggestions guys!
>>>
>>> Best,
>>> Fariba
>>>
>>>
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>>
>>
>
>
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