[Insight-users] Managed ITK itkConfidenceConnectedImageFilter

[Ali Habib]

another question please

If I work on DICOM series and want to segment in 3D
the code will be
itkImageBase
input = itk.itkImage_UC3.New(); // This is your input image
input.ReadDicomDirectory(
@"");
itkImageBase
output = itk.itkImage_UC3.New(); // This is your output image
itkConfidenceConnectedImageFilter
filter =
itkConfidenceConnectedImageFilter
.New(input, output); // This willautomatically select the "IUC2IUC2" version
of the filter

is this true

how can I reconstruct teh output of the segmentation in 3D (for example I
want to extract the jaw and display it)

any idea regards that

On Tue, Feb 23, 2010 at 12:30 PM, Dan Mueller <dan.muel at gmail.com> wrote:

> Hi Ali,
>
> It seems strange that you only get the following explicit types:
> >> itkConfidenceConnectedImageFilter_IF2IF2
> >> itkConfidenceConnectedImageFilter_IF3IF3
> >> itkConfidenceConnectedImageFilter_ISS2ISS2
> >> itkConfidenceConnectedImageFilter_IUC2IUC2
>
> When I build the latest ManagedITK (or look at the pre-built binaries
> on the Google Code page) I see the following types:
> itkConfidenceConnectedImageFilter_IF2IF2
> itkConfidenceConnectedImageFilter_IF3IF3
> itkConfidenceConnectedImageFilter_ISS2ISS2
> itkConfidenceConnectedImageFilter_ISS3ISS3
> itkConfidenceConnectedImageFilter_IUC2IUC2
> itkConfidenceConnectedImageFilter_IUC3IUC3
>
> Regarding your question about how to create a new instance of the filter:
>
> There are two ways:
>
> 1. Decide the type at compile time. eg.
> itkConfidenceConnectedImageFilter filter =
> itkConfidenceConnectedImageFilter_IF2IF2.New();
>
> 2. Decide the type at run-time. eg.
> itkImageBase input = itk.itkImage_UC2.New();
> itkImageBase output = itk.itkImage_UC2.New();
> // Select the IUC2IUC2 explicit type
> itkConfidenceConnectedImageFilter filter =
> itkConfidenceConnectedImageFilter.New(input, output);
>
> Hope this helps.
>
> Regards, Dan
>
> On 23 February 2010 10:24, Lodron, Gerald <Gerald.Lodron at joanneum.at>
> wrote:
> > Short is the same as signed short so you need:
> >
> > itkConfidenceConnectedImageFilter_ISS3ISS3
> >
> > if the class does not exist you must build it first for that image type
> > (this classes are automatically build from the original templated C++
> > classes)  but as i said i don't use managed code because of such problems
> > and can't support you with that.
> >
> > A workaround would be to convert your image from short to float then you
> can
> > use itkConfidenceConnectedImageFilter_IF3IF3, note that there already
> exists
> > some caster classes in itk which will do that for you
> > ________________________________
> > Von: Ali Habib [mailto:ali.mahmoud.habib at gmail.com]
> > Gesendet: Dienstag, 23. Februar 2010 10:17
> > An: Lodron, Gerald
> > Betreff: Re: [Insight-users] Managed ITK
> itkConfidenceConnectedImageFilter
> >
> >
> > thanks for your reply
> >
> > What if my Input is DICOM series of type short , which type shall I do ,
> > specially I want to segment in 3D
> >
> > Best regards
> >
> > On Tue, Feb 23, 2010 at 11:12 AM, Lodron, Gerald <
> Gerald.Lodron at joanneum.at>
> > wrote:
> >>
> >> itkConfidenceConnectedImageFilter_IF2IF2  - input = 2D image of type
> >> float, output = 2D image of type float
> >> itkConfidenceConnectedImageFilter_IF3IF3  - input = 3D image of type
> >> float, output =3D image of type float
> >> itkConfidenceConnectedImageFilter_ISS2ISS2  - input = 2D image of type
> >> signed short, output = 2D image of type signed short
> >>
> >> and so on....
> >>
> >> I don't use managed code because of this strange behaviour so i can't
> give
> >> you more support on error codes
> >> ________________________________
> >> Von: insight-users-bounces at itk.org [mailto:
> insight-users-bounces at itk.org]
> >> Im Auftrag von Ali Habib
> >> Gesendet: Dienstag, 23. Februar 2010 09:39
> >> An: insight-users at itk.org
> >> Betreff: [Insight-users] Managed ITK itkConfidenceConnectedImageFilter
> >>
> >> I am trying to apply itkConfidenceConnectedImageFilter to image DICOM
> >> series  , so I will use the watersheed example as guide
> >>
> >>
> >> when use itkConfidenceConnectedImageFilter . it give error that this
> class
> >> can't be accessed due to its protection
> >>
> >> and discovered that there're 4 classes for
> >> itkConfidenceConnectedImageFilter
> >>
> >> itkConfidenceConnectedImageFilter_IF2IF2
> >> itkConfidenceConnectedImageFilter_IF3IF3
> >> itkConfidenceConnectedImageFilter_ISS2ISS2
> >> itkConfidenceConnectedImageFilter_IUC2IUC2
> >>
> >> I want to do
> >> itkConfidenceConnectedImageFilter
> >> x = new itkConfidenceConnectedImageFilter (input);   // input is the
> >> itkimage that read the dicom series
> >> and continue as in watersheed example
> >> what's the difference between those classses
> >> any suggestion please
> >> Best regards
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.itk.org/pipermail/insight-users/attachments/20100223/b1bdc9b7/attachment.htm>