[Insight-users] Simple resampling problem

[Darren Weber]

Maybe change this

resampler->SetInput(input);

to this

resampler->SetInput( input->GetOutput() );




On Mon, Feb 15, 2010 at 10:21 PM, Richard Beare <richard.beare at gmail.com>wrote:

> Hi,
> I'm using an obviously buggy resampling procedure to upsample a small
> image that has been extracted from a larger one, and hence has non
> zero origin information. My result is blank, so I'm missing a setting
> somewhere, but don't have a clue as to what. Can anyone spot the
> problem?
>
> template  <class RawIm>
> typename RawIm::Pointer upsampleIm(typename RawIm::Pointer input,
> typename RawIm::SpacingType NewSpacing, int interp=1)
> {
>  const int dim = RawIm::ImageDimension;
>  typedef typename RawIm::PixelType PixelType;
>
>  typedef typename itk::ResampleImageFilter<RawIm, RawIm >
>  ResampleFilterType;
>  typedef typename itk::IdentityTransform< double, dim >  TransformType;
>  typename ResampleFilterType::Pointer resampler =
> ResampleFilterType::New();
>
>  input->Update();
>
>  typename TransformType::Pointer transform = TransformType::New();
>  transform->SetIdentity();
>  resampler->SetTransform( transform );
>  typedef typename itk::LinearInterpolateImageFunction<RawIm, double >
>  LInterpolatorType;
>  typedef typename itk::NearestNeighborInterpolateImageFunction<RawIm,
> double >  NNInterpolatorType;
>
>  typename ResampleFilterType::InterpolatorPointerType interpolator;
>  switch (interp)
>    {
>    case 0:
>      interpolator = NNInterpolatorType::New();
>      break;
>    case 1:
>      interpolator = LInterpolatorType::New();
>      break;
>    default:
>      std::cout << "Unsupported interpolator" << std::endl;
>    }
>
>  resampler->SetInterpolator( interpolator );
>  resampler->SetDefaultPixelValue( 0 );
>
>  const typename RawIm::SpacingType& inputSpacing = input->GetSpacing();
>  typename RawIm::SpacingType spacing;
>  typename RawIm::SizeType   inputSize =
> input->GetLargestPossibleRegion().GetSize();
>  typename RawIm::SizeType   size;
>  typedef typename RawIm::SizeType::SizeValueType SizeValueType;
>
>
>  for (int i = 0; i < dim; i++)
>    {
>    float factor = inputSpacing[i]/NewSpacing[i];
>    size[i] = static_cast< SizeValueType >( inputSize[i] * factor );
>    }
>   std::cout << inputSpacing << NewSpacing << std::endl;
>   std::cout << inputSize << size << input->GetOrigin() << std::endl;
>
>  resampler->SetSize( size );
>  resampler->SetOutputSpacing( NewSpacing );
>  resampler->SetOutputOrigin( input->GetOrigin() );
>  resampler->SetOutputDirection(input->GetDirection());
>  resampler->SetInput(input);
>  typename RawIm::Pointer result = resampler->GetOutput();
>  result->Update();
>  result->DisconnectPipeline();
>  return(result);
> }
>
> //////////////////////////////////////////////////
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