[Insight-users] Build problem on Mac OS 10.6?

Tue Feb 16 12:45:09 EST 2010

Thank you this is helpful.

Keeping the current build and running up to destroot (sudo port -d destroot -f -k -o -py25 +examples) gives:
{DEBUG dependancy output deleted}
DEBUG: Found Dependency: receipt exists for gawk
DEBUG: Searching for dependency: bison
DEBUG: Found Dependency: receipt exists for bison
DEBUG: Executing org.macports.main (InsightToolkit)
DEBUG: Skipping completed org.macports.fetch (InsightToolkit)
DEBUG: Skipping completed org.macports.checksum (InsightToolkit)
DEBUG: Skipping completed org.macports.extract (InsightToolkit)
DEBUG: Skipping completed org.macports.patch (InsightToolkit)
DEBUG: Skipping completed org.macports.configure (InsightToolkit)
DEBUG: Skipping completed org.macports.build (InsightToolkit)
DEBUG: Skipping completed org.macports.destroot (InsightToolkit)

$ sudo port installed  gives:
{snip}
  groff @1.20.1_1 (active)
  guile @1.8.7_0 (active)
  help2man @1.37.1_1 (active)
  InsightToolkit @3.16.0_1+doc+examples
  libiconv @1.13.1_0 (active)
 {snip}

So it's installed but not active.  Activating fails:
sudo port activate InsightToolkit @3.16.0_1+doc+examples--->  Activating InsightToolkit @3.16.0_1+doc+examples
Error: port activate failed: Image error: Source file /opt/local/var/macports/software/InsightToolkit/3.16.0_1+doc+examples does not appear to exist (cannot lstat it).  Unable to activate port InsightToolkit.

The macports trac server keeps timing out for me, so I can't see similar errors there.  Suggestions appreciated!

Mike
________________________________________
From: Darren Weber [darren.weber.lists at gmail.com]
Sent: Monday, February 15, 2010 4:49 PM
To: McCaughey, Michael J
Cc: Bill Lorensen; Insight-Users
Subject: Re: [Insight-users] Build problem on Mac OS 10.6?

There may be a fix for this MacPorts error.  It works for me on one system that has this problem.

The debug and fix process was a cyclical command sequence like this:

# Edit the Portfile
$ sudo vim `port file InsightToolkit`

# Remove the current destroot (if it exists)
$ sudo rm -rf /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_graphics_InsightToolkit/work/destroot

# Run the installation up to the destroot phase (keeping the current build)
$ sudo port -d destroot -f -k -o InsightToolkit -doc -py25

(On the test system, the -doc -py25 variants are used to build and install only the cxx code base.  All the other options are described in `man port`; the -d is verbose info, the -f is to force it, the -k and -o are to keep the build even after changing the Portfile.)

OK, so the fix that works for me is to change a few things starting at line 131.

    # copy FindITK.cmake to a version specific file, which might persist even
    # when cmake is updated, deactivated, etc.
    set cmakePath [lrange [lsort [glob ${prefix}/share/cmake-*]] end end]
    set findITK [glob ${cmakePath}/Modules/FindITK.cmake]
    set findITKbranch [strsed ${findITK} #FindITK#FindITK-${branch}#]
    xinstall -d -m 0755 ${destroot}${cmakePath}/Modules
    copy ${findITK} ${destroot}${findITKbranch}

The changes are to (a) get the latest cmake path, (b) use that path to glob for the FindITK.cmake file, and (c) explicitly create the destroot path for cmake Modules.

I hope this helps.

Best,
Darren

On Mon, Feb 15, 2010 at 10:49 AM, McCaughey, Michael J <michael.j.mccaughey at vanderbilt.edu<mailto:michael.j.mccaughey at vanderbilt.edu>> wrote:
No, the darwinports 3.16 error is this:

Error: Target org.macports.destroot returned: error copying "/opt/local/share/cmake-2.8/Modules/FindITK.cmake" to "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_graphics_InsightToolkit/work/destroot/opt/local/share/cmake-2.8/Modules/FindITK-3.16.cmake": no such file or directory

There's no cmake-2.8 directory under /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_graphics_InsightToolkit/work/destroot/opt/local/share.
This has apparently been seen before (http://www.mail-archive.com/macports-users@lists.macosforge.org/msg18052.html) but I haven't found a resolution.  It's no doubt a macports issue, not a problem with ITK.

Mike
________________________________________
From: Bill Lorensen [bill.lorensen at gmail.com<mailto:bill.lorensen at gmail.com>]
Sent: Monday, February 15, 2010 12:37 PM
To: McCaughey, Michael J
Cc: Insight-Users
Subject: Re: [Insight-users] Build problem on Mac OS 10.6?

You say you see the same error from 3.16?

On Mon, Feb 15, 2010 at 12:25 PM, McCaughey, Michael J
<michael.j.mccaughey at vanderbilt.edu<mailto:michael.j.mccaughey at vanderbilt.edu>> wrote:
> No, no attachment to 2.0, it's just what was in fink.  I tried it when I had trouble with a 3.16 build (the darwinports 3.16 build has an error too).
> I'll have to try this from source.
>
> Thanks,
> Mike
> ________________________________________
> From: Bill Lorensen [bill.lorensen at gmail.com<mailto:bill.lorensen at gmail.com>]
> Sent: Monday, February 15, 2010 10:32 AM
> To: McCaughey, Michael J
> Cc: insight-users at itk.org<mailto:insight-users at itk.org>
> Subject: Re: [Insight-users] Build problem on Mac OS 10.6?
>
> Michael,
>
> itk 2.0 is a few years old. I suspect that we were not supporting gcc
> 4.2 that long ago. Or maybe our Mac support was not that great back
> then.
>
> Do you have to use itk2.0?
>
> Bill
>
> On Mon, Feb 15, 2010 at 10:49 AM, McCaughey, Michael J
> <michael.j.mccaughey at vanderbilt.edu<mailto:michael.j.mccaughey at vanderbilt.edu>> wrote:
>> Hi!
>> I'm trying to build version 2.0.1 on a Mac (OS/X 10.6.2/dual Quad-Core Xeon/16GB/gcc 4.2.1/cmake 2.6-2) and I'm getting the following error compiling Directory.cxx:
>>
>> [  5%] Building C object Utilities/kwsys/CMakeFiles/itksys.dir/Base64.o
>> [  5%] Building CXX object Utilities/kwsys/CMakeFiles/itksys.dir/Directory.o
>> InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx:30: error: ISO C++ forbids declaration of ‘vector’ with no type
>> InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx:30: error: invalid use of ‘::’
>> InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx:30: error: expected ‘;’ before ‘<’ token
>> InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx:33: error: ‘string’ in namespace ‘::’ does not name a type
>> InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx: In member function ‘long unsigned int itksys::Directory::GetNumberOfFiles()’:
>> InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx:51: error: ‘class itksys::DirectoryInternals’ has no member named ‘Files’
>> Installs/InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx: In member function ‘const char* itksys::Directory::GetFile(long unsigned int)’:
>> Installs/InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx:57: error: ‘class itksys::DirectoryInternals’ has no member named ‘Files’
>> InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx:61: error: ‘class itksys::DirectoryInternals’ has no member named ‘Files’
>> InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx: In member function ‘bool itksys::Directory::Load(const char*)’:
>> InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx:145: error: ‘class itksys::DirectoryInternals’ has no member named ‘Files’
>> InsightToolkit-2.0.1/Utilities/kwsys/Directory.cxx:147: error: ‘class itksys::DirectoryInternals’ has no member named ‘Path’
>> make[2]: *** [Utilities/kwsys/CMakeFiles/itksys.dir/Directory.o] Error 1
>> make[1]: *** [Utilities/kwsys/CMakeFiles/itksys.dir/all] Error 2
>> make: *** [all] Error 2
>>
>> Google has not been my friend so far, has anyone seen this error?  Is it gcc's problem?
>>
>> Thanks for suggestions.
>>
>> Mike
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