[Insight-users] compilation problem itkN3MRIBiasFieldCorrectionImageFilter(taken from insight journal)
Nicholas Tustison
ntustison at gmail.com
Fri Oct 23 08:12:31 EDT 2009
It looks like there might be something else wrong besides the N3
code. What version of ITK are you using?
On Oct 23, 2009, at 7:40 AM, Samuele Dietler wrote:
> Hello,
> thank you, i was looking at your code and try some experiment for
> make it working...The line is :
>
>
> itkDebugMacro( "Iteration " << iteration << ": "
> << " convergence criterion = " << cv );
>
>
>
> But there i have still some errors...This is the list :
> 1>------ Rebuild All started: Project: ZERO_CHECK, Configuration:
> Debug Win32 ------
> 1>Deleting intermediate and output files for project 'ZERO_CHECK',
> configuration 'Debug|Win32'
> 1>Checking Build System
> 1>CMake does not need to re-run because CMakeFiles/generate.stamp is
> up-to-date.
> 1>Build log was saved at "file://c:\tk\N3CorrectionBin\ZERO_CHECK.dir\Debug\BuildLog.htm
> "
> 1>ZERO_CHECK - 0 error(s), 0 warning(s)
> 2>------ Rebuild All started: Project:
> itkN3MRIBiasFieldCorrectionImageFilterTest, Configuration: Debug
> Win32 ------
> 3>------ Rebuild All started: Project: ImageCompare, Configuration:
> Debug Win32 ------
> 3>Deleting intermediate and output files for project 'ImageCompare',
> configuration 'Debug|Win32'
> 2>Deleting intermediate and output files for project
> 'itkN3MRIBiasFieldCorrectionImageFilterTest', configuration 'Debug|
> Win32'
> 2>Building Custom Rule C:/tk/N3Correction/CMakeLists.txt
> 3>Building Custom Rule C:/tk/N3Correction/CMakeLists.txt
> 2>CMake does not need to re-run because CMakeFiles/generate.stamp is
> up-to-date.
> 2>Compiling...
> 3>CMake is re-running because build system is out-of-date.
> 3>-- Configuring done
> 2>itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> 3>-- Generating done
> 3>-- Build files have been written to: C:/tk/N3CorrectionBin
> 3>Compiling...
> 3>ImageCompare.cxx
> 3>Compiling manifest to resources...
> 3>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
> 3>Copyright (C) Microsoft Corporation. All rights reserved.
> 3>Linking...
> 3>LINK : fatal error LNK1104: cannot open file 'ITKReview.lib'
> 3>Build log was saved at "file://c:\tk\N3CorrectionBin\ImageCompare.dir\Debug\BuildLog.htm
> "
> 3>ImageCompare - 1 error(s), 0 warning(s)
> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (211) : error C3861: 'vnl_math_floor': identifier not found
> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (166) : while compiling class template member function
> 'itk::SmartPointer<TObjectType>
> itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <TInputImage,TMaskImage,TOutputImage>::SharpenImage
> (itk::SmartPointer<TObjectType>)'
> 2> with
> 2> [
> 2> TObjectType=itk::Image<RealType,2>,
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (38) : while compiling class template member function
> 'itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <
> TInputImage
> ,TMaskImage,TOutputImage>::N3MRIBiasFieldCorrectionImageFilter(void)'
> 2> with
> 2> [
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> (109) : see reference to class template instantiation
> 'itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <TInputImage,TMaskImage,TOutputImage>' being compiled
> 2> with
> 2> [
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> (217) : see reference to function template instantiation 'int
> itkN3MRIBiasFieldCorrectionImageFilterTest<2>(int,char *[])' being
> compiled
> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (367) : error C3861: 'vnl_math_floor': identifier not found
> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (445) : error C2039: 'SetDirection' : is not a member of
> 'itk
> ::BSplineScatteredDataPointSetToImageFilter
> <TInputPointSet,TOutputImage>'
> 2> with
> 2> [
> 2>
> TInputPointSet
> =
> itk
> ::PointSet
> <
> itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <ImageType,MaskImageType,ImageType>::ScalarType,2>,
> 2>
> TOutputImage
> =
> itk
> ::Image
> <
> itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <ImageType,MaskImageType,ImageType>::ScalarType,2>
> 2> ]
> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (391) : while compiling class template member function
> 'itk::SmartPointer<TObjectType>
> itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <TInputImage,TMaskImage,TOutputImage>::SmoothField
> (itk::SmartPointer<TObjectType>)'
> 2> with
> 2> [
> 2> TObjectType=itk::Image<RealType,2>,
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (211) : error C3861: 'vnl_math_floor': identifier not found
> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (166) : while compiling class template member function
> 'itk::SmartPointer<TObjectType>
> itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <TInputImage,TMaskImage,TOutputImage>::SharpenImage
> (itk::SmartPointer<TObjectType>)'
> 2> with
> 2> [
> 2> TObjectType=itk::Image<RealType,3>,
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (38) : while compiling class template member function
> 'itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <
> TInputImage
> ,TMaskImage,TOutputImage>::N3MRIBiasFieldCorrectionImageFilter(void)'
> 2> with
> 2> [
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> (109) : see reference to class template instantiation
> 'itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <TInputImage,TMaskImage,TOutputImage>' being compiled
> 2> with
> 2> [
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> (220) : see reference to function template instantiation 'int
> itkN3MRIBiasFieldCorrectionImageFilterTest<3>(int,char *[])' being
> compiled
> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (367) : error C3861: 'vnl_math_floor': identifier not found
> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (445) : error C2039: 'SetDirection' : is not a member of
> 'itk
> ::BSplineScatteredDataPointSetToImageFilter
> <TInputPointSet,TOutputImage>'
> 2> with
> 2> [
> 2>
> TInputPointSet
> =
> itk
> ::PointSet
> <
> itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <ImageType,MaskImageType,ImageType>::ScalarType,3>,
> 2>
> TOutputImage
> =
> itk
> ::Image
> <
> itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <ImageType,MaskImageType,ImageType>::ScalarType,3>
> 2> ]
> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (391) : while compiling class template member function
> 'itk::SmartPointer<TObjectType>
> itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <TInputImage,TMaskImage,TOutputImage>::SmoothField
> (itk::SmartPointer<TObjectType>)'
> 2> with
> 2> [
> 2> TObjectType=itk::Image<RealType,3>,
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 4>------ Skipped Rebuild All: Project: NightlyMemoryCheck,
> Configuration: Debug Win32 ------
> 4>Project not selected to build for this solution configuration
> 5>------ Skipped Rebuild All: Project: Nightly, Configuration: Debug
> Win32 ------
> 5>Project not selected to build for this solution configuration
> 6>------ Skipped Rebuild All: Project: RUN_TESTS, Configuration:
> Debug Win32 ------
> 6>Project not selected to build for this solution configuration
> 7>------ Skipped Rebuild All: Project: Experimental, Configuration:
> Debug Win32 ------
> 7>Project not selected to build for this solution configuration
> 8>------ Skipped Rebuild All: Project: Continuous, Configuration:
> Debug Win32 ------
> 8>Project not selected to build for this solution configuration
> 2>Build log was saved at "file://c:\tk\N3CorrectionBin\itkN3MRIBiasFieldCorrectionImageFilterTest.dir\Debug\BuildLog.htm
> "
> 2>itkN3MRIBiasFieldCorrectionImageFilterTest - 6 error(s), 0 warning
> (s)
> 9>------ Skipped Rebuild All: Project: ALL_BUILD, Configuration:
> Debug Win32 ------
> 9>Project not selected to build for this solution configuration
> ========== Rebuild All: 1 succeeded, 2 failed, 6 skipped ==========
>
>
>
>
>
> Maybe i will wait until today late so that you can correct...because
> for the moment i'm not an expert and i can correct only my simple
> code and not codes so complex...
> Thank you
> Samuele
>
>
> CC: insight-users at itk.org
> From: ntustison at gmail.com
> Subject: Re: [Insight-users] compilation problem
> itkN3MRIBiasFieldCorrectionImageFilter(taken from insight journal)
> Date: Fri, 23 Oct 2009 07:26:25 -0400
> To: samuele_82 at hotmail.com
>
> Hi Samuele,
>
> I need to fix the recent code revision---I made some changes such as
> adding a progress reporter and I didn't realize until recently that
> there's a bug. Anyway, you can wait until later today when I upload
> a corrected version or you can find the line in the .txx file, in
> the function GenerateData(), that reads something like
>
> itkDebugMacro( "Iteration: " << iteration << ": Convergence
> threshold = " << convergence )
>
> and just delete it. That should correct the problem.
>
> Nick
>
>
> On Oct 23, 2009, at 5:42 AM, Samuele Dietler wrote:
>
> Hello itk users,
> i have a problem with the following library :
> itkN3MRIBiasFieldCorrectionImageFilter(taken by insight journal). I
> compile it in visual studio 9 with itk3.8. The first time that i
> compiled it i had a problem with review option of itk, so i turned
> on review and i recompiled itk. After i have recompiled
> itkN3MRIBiasFieldCorrectionImageFilter but this time the following
> list of errors appear :
>
>
> 1>------ Build started: Project: ImageCompare, Configuration: Debug
> Win32 ------
> 2>------ Build started: Project:
> itkN3MRIBiasFieldCorrectionImageFilterTest, Configuration: Debug
> Win32 ------
> 2>Compiling...
> 1>Compiling...
> 1>ImageCompare.cxx
> 2>itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (136) : error C2065: 'iteration' : undeclared identifier
> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (59) : while compiling class template member function 'void
> itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <TInputImage,TMaskImage,TOutputImage>::GenerateData(void)'
> 2> with
> 2> [
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> (109) : see reference to class template instantiation
> 'itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <TInputImage,TMaskImage,TOutputImage>' being compiled
> 2> with
> 2> [
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> (217) : see reference to function template instantiation 'int
> itkN3MRIBiasFieldCorrectionImageFilterTest<2>(int,char *[])' being
> compiled
> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (136) : error C2065: 'cv' : undeclared identifier
> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (136) : error C2065: 'iteration' : undeclared identifier
> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (59) : while compiling class template member function 'void
> itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <TInputImage,TMaskImage,TOutputImage>::GenerateData(void)'
> 2> with
> 2> [
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> (109) : see reference to class template instantiation
> 'itk
> ::N3MRIBiasFieldCorrectionImageFilter
> <TInputImage,TMaskImage,TOutputImage>' being compiled
> 2> with
> 2> [
> 2> TInputImage=ImageType,
> 2> TMaskImage=MaskImageType,
> 2> TOutputImage=ImageType
> 2> ]
> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> (220) : see reference to function template instantiation 'int
> itkN3MRIBiasFieldCorrectionImageFilterTest<3>(int,char *[])' being
> compiled
> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx
> (136) : error C2065: 'cv' : undeclared identifier
> 2>Build log was saved at "file://c:\tk\N3CorrectionBin\itkN3MRIBiasFieldCorrectionImageFilterTest.dir\Debug\BuildLog.htm
> "
> 2>itkN3MRIBiasFieldCorrectionImageFilterTest - 4 error(s), 0 warning
> (s)
> 1>Compiling manifest to resources...
> 1>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
> 1>Copyright (C) Microsoft Corporation. All rights reserved.
> 1>Linking...
> 1>LINK : fatal error LNK1104: cannot open file 'ITKReview.lib'
> 1>Build log was saved at "file://c:\tk\N3CorrectionBin\ImageCompare.dir\Debug\BuildLog.htm
> "
> 1>ImageCompare - 1 error(s), 0 warning(s)
> ========== Build: 0 succeeded, 2 failed, 2 up-to-date, 0 skipped
> ==========
>
>
> Does anyone know hot to solve the problem??
>
>
> Thank you, bests
> Samuele
>
>
>
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