[Insight-users] [Insight-developers] fixing a few remaining failing tests relating to pixel-centered coordinates

[Bill Lorensen]

Yes, I think that will be OK. We should add an Attention: warning to
the CMakeLists.txt file. Something like:

  SET(msg "Attention: You have chosen to enable the use of
cell-centered coordinates.")
  SET(msg "${msg} This new functionality has not been fully validated.
USE AT YOUR OWN RISK.")
  SET(msg "${msg} With this ON, you can expect to see differences in
registration and interpolation results.")

# display the message during the setup
MESSAGE("${msg}")

On Wed, May 20, 2009 at 11:23 PM, Wes Turner <wes.turner at kitware.com> wrote:
> Bill,
> I think the idea is to disable the cell-centered functionality until after
> the release.  I.e. the code will be in, but not enabled in the CMake
> options.  Is this an acceptable alternative?
> - Wes
> On Wed, May 20, 2009 at 7:20 PM, Bill Lorensen <bill.lorensen at gmail.com>
> wrote:
>>
>> I understand the current situation. I do believe however that we
>> should validate the new techniques. Regression testing is meant to
>> track changes in the code but they do not validate the code. Before we
>> release ITK with these new capabilities I think we should make sure
>> the code is correct. Even if this means we have to delay the release.
>>
>> Bill
>>
>> On Wed, May 20, 2009 at 1:57 PM, Michel Audette
>> <michel.audette at kitware.com> wrote:
>> > Hi Bill,
>> >
>> > so far we are only modifying existing tests that were failing. The
>> > following
>> > tests include new code,
>> >
>> > Code/BasicFilters/itkExpandImageFilterTest.cxx:
>> > Code/BasicFilters/itkVectorExpandImageFilterTest.cxx:
>> > Code/Common/itkBSplineDeformableTransformTest2.cxx
>> >
>> > which assume pixel-centeredness. Moreover, many other tests have new
>> > regression data committed, and ctest selects the appropriate data set
>> > depending on the value of these flags.
>> >
>> > Best wishes,
>> >
>> > Michel
>> >
>> > On Wed, May 20, 2009 at 1:48 PM, Bill Lorensen <bill.lorensen at gmail.com>
>> > wrote:
>> >>
>> >> Do we have a test that validates the centered pixel and portable round
>> >> options? For example, a 1D example that can be manual verified.
>> >>
>> >> Bill
>> >>
>> >>
>> >> On Wed, May 20, 2009 at 1:12 PM, Michel Audette
>> >> <michel.audette at kitware.com> wrote:
>> >> > Dear members of the Insight Community,
>> >> >
>> >> > in response to bug 6558, Luis and I have implemented some changes
>> >> > that
>> >> > produce pixel-centered coordinates, as well as a few other needed
>> >> > refinements, which are enabled by the flags
>> >> > ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY,
>> >> > ITK_USE_REGION_VALIDATION_IN_ITERATORS and
>> >> > ITK_USE_PORTABLE_ROUND
>> >> >
>> >> > With the flags turned off, the code behaves as before, with no
>> >> > failing
>> >> > tests. With the flags turned on there are still a number of failing
>> >> > tests,
>> >> > that are related to these new coordinates, and which have been
>> >> > whittled
>> >> > down
>> >> > from more than 25 to 14 currently.
>> >> >
>> >> > Nonetheless, we would like to get rid of as many of these as we can
>> >> > by
>> >> > next
>> >> > Monday, for the upcoming release of ITK, and consequently, we would
>> >> > respectfully ask interested members of the community to lend a hand
>> >> > with
>> >> > the
>> >> > remaining tests.
>> >> >
>> >> > I will be submitting an Experimental ctest on a regular basis, with
>> >> > the
>> >> > signature metropolis-pixelcentered.kitware
>> >> > Currently the failing tests are the following.
>> >> >     169 - itkSampleSelectiveMeanShiftBlurringFilterTest (Failed)
>> >> >     340 - itkMedialNodeCorrespondencesTest (Failed)
>> >> >     543 - itkImportImageTest (Failed)
>> >> >     572 - itkNonThreadedShrinkImageTest (Failed)
>> >> >     594 - itkShrinkImageTest (Failed)
>> >> >     615 - itkStreamingImageFilterTest2 (Failed)
>> >> >     630 - itkWarpImageFilterTest (Failed)
>> >> >     632 - itkWarpVectorImageFilterTest (Failed)
>> >> >     800 - itkMattesMutualInformationImageToImageMetricTest (Failed)
>> >> >     801 - itkMattesMutualInformationImageToImageMetricTest2 (Failed)
>> >> >     802 - itkMattesMutualInformationImageToImageMetricTest3 (Failed)
>> >> >     803 - itkMattesMutualInformationImageToImageMetricTest4 (Failed)
>> >> >     816 - itkMultiResolutionPDEDeformableRegistrationTest (Failed)
>> >> >     1470 - ResampleImageFilter9Test (Failed)
>> >> >
>> >> > I plan to work on failing tests relating to the itkShrinkImageFilter
>> >> > class.
>> >> >
>> >> > Thank you for your kind consideration.
>> >> >
>> >> > Best wishes,
>> >> >
>> >> > Michel
>> >> > --
>> >> > Michel Audette, Ph.D.
>> >> > R & D Engineer,
>> >> > Kitware Inc.,
>> >> > Chapel Hill, N.C.
>> >> >
>> >> >
>> >> > _______________________________________________
>> >> > Powered by www.kitware.com
>> >> >
>> >> > Visit other Kitware open-source projects at
>> >> > http://www.kitware.com/opensource/opensource.html
>> >> >
>> >> > Please keep messages on-topic and check the ITK FAQ at:
>> >> > http://www.itk.org/Wiki/ITK_FAQ
>> >> >
>> >> > Follow this link to subscribe/unsubscribe:
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>> >> >
>> >> >
>> >
>> >
>> >
>> > --
>> > Michel Audette, Ph.D.
>> > R & D Engineer,
>> > Kitware Inc.,
>> > Chapel Hill, N.C.
>> >
>> >
>> _______________________________________________
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>>
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>
>
>
> --
> Wesley D. Turner, Ph.D.
> Kitware, Inc.
> R&D Engineer
> 28 Corporate Drive
> Clifton Park, NY 12065-8662
> Phone: 518-371-3971 x120
>