[Insight-users] Question about "Non-rigid Groupwise Registration using B-Spline Deformation Model"
Kaveh Kohan
kaveh.kohan at yahoo.com
Mon Aug 17 11:04:40 EDT 2009
Hi Luis,
Thank you for your reply.
Instead of one, I have attached result of two tests. The reason is that
they fail by two different error messages.
Here is some results:
Regards,
Kaveh
-----------------------------------------------------------------
>>> ctest -R RegistrationTest001 -V
UpdateCTestConfiguration
from
:/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/DartConfiguration.tcl
Parse Config file:/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/DartConfiguration.tcl
Start processing tests
UpdateCTestConfiguration
from
:/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/DartConfiguration.tcl
Parse
Config
file:/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/DartConfiguration.tcl
Test project /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration
Constructing a list of tests
Done constructing a list of tests
Changing directory into /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing
2/ 72 Testing RegistrationTest001
Test
command:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/GroupwiseRegistration /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/filenames001.txt
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration001/parameters001.txt
Test timeout computed to be: 3600
message:
Reading Image:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData001/Images/0.mhd
message:
Reading Image:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData001/Images/1.mhd
message: Starting Registration
message: Registration using UnivariateEntropyMultiImageMetric
message: Transform Type AffineTransform
message: Multiresolution level : 0
message: Number of total parameters : 24
message: Optimizertype : GradientDescentLineSearchOptimizer
message: Optimizer # of Iter. to go : 91
message: Optimizer learning rate : 0.0001
message: Number of total pixels : 109350
message: Number of used pixels : 4418
Iter 000 000 1.223723
Iter 010 010 1.072768
Iter 020 020 1.028610
Iter 030 030 0.992359
Iter 040 040 0.943504
Iter 050 050 0.937497
Iter 060 060 0.936039
Iter 070 070 0.936147
Iter 080 080 0.935675
Iter 090 090 0.936125
message: Registration using UnivariateEntropyMultiImageMetric
message: Transform Type AffineTransform
message: Multiresolution level : 1
message: Number of total parameters : 24
message: Optimizertype : GradientDescentLineSearchOptimizer
message: Optimizer # of Iter. to go : 52
message: Optimizer learning rate : 0.000100
message: Number of total pixels : 874800
message: Number of used pixels : 8836
Iter 100 008 0.929788
Iter 110 018 0.930096
Iter 120 028 0.930409
Iter 130 038 0.929714
Iter 140 048 0.929589
message: Registration using UnivariateEntropyMultiImageMetric
message: Transform Type AffineTransform
message: Multiresolution level : 2
message: Number of total parameters : 24
message: Optimizertype : GradientDescentLineSearchOptimizer
message: Optimizer # of Iter. to go : 29
message: Optimizer learning rate : 0.000100
message: Number of total pixels : 7069860
message: Number of used pixels : 17672
Iter 150 005 0.929964
Iter 160 015 0.929415
Iter 170 025 0.929827
message: Registration Completed
message: Time Report
terminate called after throwing an instance of 'itk::ExceptionObject'
what(): /home/kaveh/bin/InsightToolkit-3.10.1/Code/Common/itkResourceProbesCollectorBase.txx:50:
itk::ERROR: The probe "5Total Time " does not exist. It can not be stopped.
-- Process completed
*** Exception executing: Child aborted
***Exception: Other
0% tests passed, 1 tests failed out of 1
The following tests FAILED:
2 - RegistrationTest001 (OTHER_FAULT)
Errors while running CTest
-------------------------------------------------------------------------------------------------------------------------------------------------
---------------------------------------------------------------------------------
>>> ctest -R RegistrationTest005 -V
UpdateCTestConfiguration
from
:/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/DartConfiguration.tcl
Parse
Config
file:/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/DartConfiguration.tcl
Start processing tests
UpdateCTestConfiguration
from
:/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/DartConfiguration.tcl
Parse
Config
file:/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/DartConfiguration.tcl
Test project /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration
Constructing a list of tests
Done constructing a list of tests
Changing directory into /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing
14/ 72 Testing RegistrationTest005
Test
command:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/bin/GroupwiseRegistration
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration005/filenames005.txt /home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/Registration005/parameters005.txt
Test timeout computed to be: 7200
message:
Reading Image:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData005/Images/0.mhd
message:
Reading Image:
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Testing/Temporary/ImageData005/Images/1.mhd
message: Starting Registration
message: Registration using UnivariateEntropyMultiImageMetric
message: Transform Type AffineTransform
message: Multiresolution level : 0
message: Number of total parameters : 24
message: Optimizertype : GradientDescentLineSearchOptimizer
message: Optimizer # of Iter. to go : 30
message: Optimizer learning rate : 0.0001
message: Number of total pixels : 109350
message: Number of used pixels : 4418
Iter 000 000 1.120938
Iter 010 010 1.127905
Iter 020 020 1.123289
Iter 030 030 1.126770
message: Registration using UnivariateEntropyMultiImageMetric
message: Transform Type AffineTransform
message: Multiresolution level : 1
message: Number of total parameters : 24
message: Optimizertype : GradientDescentLineSearchOptimizer
message: Optimizer # of Iter. to go : 17
message: Optimizer learning rate : 0.000100
message: Number of total pixels : 874800
message: Number of used pixels : 8836
Iter 040 009 1.157081
message: Registration using UnivariateEntropyMultiImageMetric
message: Transform Type AffineTransform
message: Multiresolution level : 2
message: Number of total parameters : 24
message: Optimizertype : GradientDescentLineSearchOptimizer
message: Optimizer # of Iter. to go : 9
message: Optimizer learning rate : 0.000100
message: Number of total pixels : 7069860
message: Number of used pixels : 17672
Iter 050 001 1.167386
message: Registration using UnivariateEntropyMultiImageMetric
message: Transform Type BSplineDeformableTransformOpt
message: Multiresolution level : 0
message: Number of total parameters : 7986
message: Optimizertype : GradientDescentLineSearchOptimizer
message: Optimizer # of Iter. to go : 168
message: Optimizer learning rate : 625.000000
message: Number of total pixels : 109350
message: Number of used pixels : 8837
ExceptionObject caught !
itk::ExceptionObject (0x7f00f797a8e0)
Location: "void itk::MultiThreader::SingleMethodExecute()"
File: /home/kaveh/bin/InsightToolkit-3.10.1/Code/Common/itkMultiThreader.cxx
Line: 429
Description: itk::ERROR: MultiThreader(0x278ea20): Exception occurred during SingleMethodExecute
/home/kaveh/Src/BSplineGroupwiseRegistration/GroupwiseRegistration/MultiImageRegistration/Source/UnivariateEntropyMultiImageMetric.txx:238:
itk::ERROR: UnivariateEntropyMultiImageMetric(0x2788e50): Too many samples mapped outside the moving buffer
-- Process completed
***Failed
0% tests passed, 1 tests failed out of 1
The following tests FAILED:
14 - RegistrationTest005 (Failed)
Errors while running CTest
-----------------------------------------------------------------------------
[....]
About your specific question,
could you please run the following command ?
ctest -R RegistrationTest001 -V
and post the output to the list.
This will run that specific test and provide
details on the cause of the failure.
Thanks
Luis
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