[Insight-users] Kappa Sigma Clipping typedef error

[Oleksandr Dzyubak]

Hi Luis,

I have rebuilt my ITK and tested the updated
version of the "Kappa Sigma Clipping" algorithm.

Fantastic, works perfectly well and very fast.
Gaetan Lehmann, thanks for your contribution.

Thanks all of you for your help and support,

Alex

Luis Ibanez wrote:
>
> Hi Olkesandr,
>
> This classes contributeed by Gaetan Lehmann have now been included
> in the Insight/Code/Review directory in the main CVS trunk of ITK.
>
> If you want to try the new versions, please do the following:
>
>   1) Update your cvs Checkout
>   2) Rerun CMake on the binary directory of ITK
>   3) go to Advanced
>   4) enable the variable ITK_USE_REVIEW
>   5) configure and generate with CMake
>
>
> You will find a test under
>
>
>      Insight/Testing/Code/Review
>
>
> that illustrates how you can set up the type of the output image.
>
>
>
>   Please give it a try and let us know if you find any problems,
>
>
>      Thanks
>
>
>         Luis
>
>
> ------------------------
> Oleksandr Dzyubak wrote:
>> Dear ITKers,
>>
>> Some while ago I decided to test the Kappa Sigma Clipping algorithm 
>> which
>> I downloaded from the Insight-journal web page.
>>
>> http://insight-journal.org/midas/handle.php?handle=1926/367
>>
>> In the paper which comes with an archive there is an explanation
>> how to use it and, in particular, the lines describing the types of 
>> input/output images.
>>
>> ***********Begin code snippet*********
>> const int dim = 3;
>>
>> typedef unsigned char PType;
>> typedef itk::Image< PType, dim > IType;
>> typedef itk::ImageFileReader< IType > ReaderType;
>>
>> typedef itk::ImageFileWriter< IType > WriterType;
>> ***********End code snippet*********
>>
>> Of cousre, that is quite natural to keep an output segmented binary 
>> image as an  unsigned char type
>> but what about an input image. In my case I have input images in a 
>> signed short format and
>> if I change the typedef for the input to signed short, I get an error 
>> below.
>>
>> ******* Begin Error ************
>>
>> dzyubak at debian: /BUILD$ make
>> Scanning dependencies of target check
>> [100%] Building CXX object CMakeFiles/check.dir/check.cxx.o
>> /mnt/Public/ITK_Test/Kappa_Sigma_Clipping/Src/check.cxx: In function 
>> 'int main(int, char**)':
>> /mnt/Public/ITK_Test/Kappa_Sigma_Clipping/Src/check.cxx:42: error: no 
>> matching function for call to 
>> 'itk::ImageFileWriter<itk::Image<unsigned char, 3u> 
>> >::SetInput(itk::Image<short int, 3u>*)'
>> /usr/local/include/InsightToolkit/IO/itkImageFileWriter.txx:56: note: 
>> candidates are: void 
>> itk::ImageFileWriter<TInputImage>::SetInput(const TInputImage*) [with 
>> TInputImage = itk::Image<unsigned char, 3u>]
>> make[2]: *** [CMakeFiles/check.dir/check.cxx.o] Error 1
>> make[1]: *** [CMakeFiles/check.dir/all] Error 2
>> make: *** [all] Error 2
>> dzyubak at debian: /BUILD$
>>
>> ******* End Error ************
>>
>>
>> Does this mean that the algorithm can only work if the input type 
>> matches the output?
>> If it does, then I have to extend the pipeline so to include the 
>> rescaler, right?
>>
>> I would appreciate any help on this matter.
>>
>> Thanks,
>>
>> Alex
>> _______________________________________________
>> Insight-users mailing list
>> Insight-users at itk.org
>> http://www.itk.org/mailman/listinfo/insight-users
>>