[Insight-users] problem with CellularSegmentation

[Luis Ibanez]

Hi Pavel,


There seems to be a system configuration problem in you computer.


Probably related to X11 .... (?)


You may want to verify first that your system is configured
consistently. This may require some assistance from a local
Mac-Guru.



We will be happy to guide you with the Cellular Algorithms
once your system is up and running again.


As a plan B, you may want to try this applications in a
Linux box, or even a Windows machine, if you have one
at hand.

-- 


NOTE that the duplicate symbols that you are getting are
related to expat. Both VTK and ITK have expat libraries
in the Utilities. I wonder if when you ran CMake you selected
to use the expat library from your system instead of using
the ones in ITK/VTK.


It may help to try building both ITK and VTK with static
libraries instead of Shared libraries....



Please let us know what you find.



    Thanks


      Luis


--------------------
Pavel Tomancak wrote:

 > Hi Louis,
 >
 > I couldn't even compile SNAP. This is what I get.
 >
 > PAvel
 >
 > Linking CXX executable InsightSNAP
 > ld: warning multiple definitions of symbol _XML_GetIdAttributeIndex
 > /usr/X11R6/lib/libexpat.1.dylib(xmlparse.o) definition of 
_XML_GetIdAttributeIndex
 > /Applications/itk_binary/bin/libITKEXPAT.dylib(xmlparse.o) definition 
  of _XML_GetIdAttributeIndex
 > ld: warning multiple definitions of symbol _XML_GetInputContext
 > /usr/X11R6/lib/libexpat.1.dylib(xmlparse.o) definition of 
_XML_GetInputContext
 > /Applications/itk_binary/bin/libITKEXPAT.dylib(xmlparse.o) definition 
  of _XML_GetInputContext
 > ld: warning multiple definitions of symbol 
_XML_GetSpecifiedAttributeCount
 > /usr/X11R6/lib/libexpat.1.dylib(xmlparse.o) definition of 
_XML_GetSpecifiedAttributeCount
 > /Applications/itk_binary/bin/libITKEXPAT.dylib(xmlparse.o) definition 
  of _XML_GetSpecifiedAttributeCount
 > ld: warning multiple definitions of symbol _XML_Parse
 > /usr/X11R6/lib/libexpat.1.dylib(xmlparse.o) definition of _XML_Parse
 > /Applications/itk_binary/bin/libITKEXPAT.dylib(xmlparse.o) definition 
  of _XML_Parse
 > ld: warning multiple definitions of symbol _XML_ParseBuffer
 > /usr/X11R6/lib/libexpat.1.dylib(xmlparse.o) definition of 
_XML_ParseBuffer
 > /Applications/itk_binary/bin/libITKEXPAT.dylib(xmlparse.o) definition 
  of _XML_ParseBuffer
 > ld: warning multiple definitions of symbol _XML_ParserCreate
 > /usr/X11R6/lib/libexpat.1.dylib(xmlparse.o) definition of 
_XML_ParserCreate
 > /Applications/itk_binary/bin/libITKEXPAT.dylib(xmlparse.o) definition 
  of _XML_ParserCreate


.. snip...