[Insight-users] DeformableRegistration7.cxx
Jim
itkvtk at gmail.com
Fri Jan 14 18:08:10 EST 2005
Few questions regarding DeformableRegistration7.cxx,
Line 117-128 of DeformableRegistration7.cxx:
//
if( argc < 4 )
{
std::cerr << "Missing Parameters " << std::endl;
std::cerr << "Usage: " << argv[0];
std::cerr << " fixedImageFile movingImageFile outputImagefile ";
std::cerr << " [differenceOutputfile] [differenceBeforeRegistration] ";
std::cerr << " [deformationField] ";
return 1;
}
const unsigned int ImageDimension = 3;
typedef float PixelType;
//
and line 368,
//
typedef unsigned char OutputPixelType;
//
1. Should fixedImageFile, movingImageFile and outputImagefile all have
same pixel type? From above coding, it seems the program is expecting
a "float" pixel type but output a "char' pixel type.
2. I modified both pixel type to "unsigned char" and tried with brainweb images,
DeformableRegistrationA brainweb1e1a10f20.mha
brainweb1e1a10f20Rot10Tx15.mha out1.mhd out2.mhd out3.mha df.mhd
The program seems run ok and it stops after 10531.2 seconds. see
attachemtns for screen output. Any image utility/tool can view these
files (.mhd) and do some evaluation of the registraion results?
3.When I modified both pixel type to "unsigned short", it stops after
614.672 seconds and yields only zeros. Both scan and math are unsigned
short CT images (2 bytes/ pixel). Is the problem cause by the changes
I made or CT image data?
DeformableRegistrationUS scan.mha math.mha out1.mhd out2.mhd out3.mha df.mhd
scan.mha:
NDims = 3
DimSize = 512 512 40
ElementType = MET_USHORT
ElementSpacing = 0.9766 0.9766 2.00
ElementByteOrderMSB = False
ElementDataFile = scan.raw
Thanks in advance.
Jim
-------------- next part --------------
D:\Insight-Bin>cd release
D:\Insight-Bin\Release>DeformableRegistrationA brainweb1e1a10f20.mha brainweb1e1
a10f20Rot10Tx15.mha out1.mhd out2.mhd out3.mha df.mhd
'DeformableRegistrationA' is not recognized as an internal or external command,
operable program or batch file.
D:\Insight-Bin\Release>dir
Volume in drive D has no label.
Volume Serial Number is 3069-7A44
Directory of D:\Insight-Bin\Release
01/05/2005 04:19 PM <DIR> .
01/05/2005 04:19 PM <DIR> ..
01/12/2005 11:47 AM 1,876 BuildLog.htm
1 File(s) 1,876 bytes
2 Dir(s) 34,321,256,448 bytes free
D:\Insight-Bin\Release>cd ..
D:\Insight-Bin>cd bin
D:\Insight-Bin\bin>cd release
D:\Insight-Bin\bin\release>DeformableRegistrationA brainweb1e1a10f20.mha brainwe
b1e1a10f20Rot10Tx15.mha out1.mhd out2.mhd out3.mha df.mhd
Intial Parameters =
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Starting Registration
0 5097.07 4.20615
1 4079.76 3.88722
2 3328.01 4.4659
3 2711.32 4.59979
4 2450.43 5.50039
5 2099.08 5.61127
6 1683.08 4.10923
7 1470.59 3.41027
8 1299.74 3.82053
9 1206.89 4.67834
10 1124.93 1.97138
11 1035.87 2.33235
12 941.716 2.64126
13 859.951 2.75289
14 776.335 2.02378
15 719.324 1.96656
16 666.809 2.07866
17 611.083 1.53318
18 563.645 1.61237
19 526.763 2.32456
20 495.503 1.38134
21 470.265 1.19423
22 440.99 1.18072
23 424.387 1.84659
24 392.661 1.59274
25 367.973 1.8785
26 336.39 1.07877
27 316.2 1.15593
28 294.912 1.0621
29 277.897 0.838856
Last Transform Parameters
[-0.000616512, -0.0608067, -0.191983, -0.0418803, 0.0682202, 0.0343915, 0.001079
71, 0, -0.0188789, -0.892208, -2.27739, -0.580685, 0.916802, 1.06227, 0.0665916,
0, 0.0367028, -0.625768, -1.80451, -0.560294, 0.228551, 0.190769, -0.146344, 0,
0.469061, 2.08022, 0.614033, 0.880606, 0.990368, 0.263001, 0.0451712, 0, 0.3444
45, 2.97736, 3.66378, 4.00077, 2.48127, 1.42114, 0.335349, 0, 0.0368758, 0.81944
, 2.8502, 4.31439, 1.40266, -0.197299, 0.0244691, 0, 0.000383716, 0.0155891, 0.2
2856, 0.474219, 0.206768, 0.0113841, -0.000153682, 0, 0, 0, 0, 0, 0, 0, 0, 0, -0
.00912963, -0.602817, -1.7806, -0.476163, 0.743581, 0.380554, 0.0111625, 0, -0.2
77078, -7.40208, -17.0534, -6.9139, 3.60542, 8.64238, 0.863686, 0, -0.0950381, -
5.15171, -9.75013, -7.16288, -12.0977, -2.74801, -1.10448, 0, 2.09292, 8.83272,
0.881715, 6.61225, 6.85355, -1.06854, 0.236439, 0, 1.31064, 14.9564, 16.2558, 11
.9163, 12.7166, 4.04222, 2.08963, 0, 0.100803, 5.44917, 21.7515, 29.9524, 17.017
1, 0.168615, -0.0149399, 0, 0.0040243, 0.203565, 2.21338, 4.30296, 2.31382, 0.34
0309, 0.00206916, 0, 0, 0, 0, 0, 0, 0, 0, 0, -0.0200694, -0.815722, -2.19266, -1
.08424, 0.754819, 0.511318, 0.0124341, 0, -0.73696, -10.1628, -18.7713, -15.0098
, -10.0241, 3.36581, 1.31933, 0, -0.976391, -6.7538, -5.70011, -11.2182, -25.572
5, -5.61782, -0.538385, 0, 0.588654, 5.98976, 0.00349691, 9.25279, 6.42925, -1.3
7993, 0.057175, 0, 0.189182, 14.7995, 11.8996, -0.366684, 11.5917, 8.05653, 3.68
869, 0, 0.100624, 11.9526, 29.7447, 28.5078, 29.8621, 6.15567, 0.0444601, 0, 0.0
0986068, 0.553779, 2.42758, 4.19793, 2.80765, 0.560146, 0.0134808, 0, 0, 0, 0, 0
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97569, 0, -0.747963, -10.6926, -20.4509, -12.5084, -5.78376, 4.159, 1.16455, 0,
-1.94914, -7.64246, -3.72823, -11.0296, -11.443, -0.658388, -1.12558, 0, -0.4546
42, 4.02821, 2.01836, 3.65707, 3.8038, 2.93976, -0.943927, 0, 1.29418, 15.4516,
11.1127, 18.3023, 12.5245, 10.378, 3.70225, 0, 0.374756, 11.5351, 24.6192, 24.01
77, 14.5295, -1.48964, -0.207593, 0, 0.00809116, 0.321425, 0.920943, 1.48218, 0.
611743, 0.0202474, 0.00494591, 0, 0, 0, 0, 0, 0, 0, 0, 0, -0.00312528, -0.231156
, -0.903097, -0.167958, 0.818019, 0.201619, -4.77299e-005, 0, -0.246496, -5.3939
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8, -16.1153, -8.85047, 7.19327, 0.737497, 0, 0.209761, 4.31645, 2.66109, -1.8386
6, -2.73955, 0.989264, 0.0837888, 0, 1.31967, 10.959, 15.7306, 18.4326, 12.5809,
2.6006, 0.599397, 0, 0.203945, 4.7901, 14.8103, 11.5088, 8.0378, 0.346797, -0.1
66554, 0, 0.00431856, 0.0994143, 0.337798, 0.12395, -0.0338211, 0.0392789, 8.827
36e-005, 0, 0, 0, 0, 0, 0, 0, 0, 0, -7.94472e-005, -0.0184054, -0.127208, -0.047
2153, 0.0962814, 0.00143202, -0.00195381, 0, -0.0178817, -1.1649, -4.82894, -2.3
6625, 1.3667, 0.981189, 0.0852684, 0, -0.0203463, -3.2873, -9.74501, -2.49096, 7
.77815, 8.3184, 1.08706, 0, 2.08274, 10.0373, 1.16398, 5.19129, 13.6503, 8.08195
, 0.839716, 0, 2.73589, 17.3736, 13.4803, 9.72473, 7.92364, 2.57697, 0.048961, 0
, 0.229353, 1.94481, 3.2475, 1.79742, 0.577635, 0.134093, -0.00783903, 0, 0.0019
8024, 0.0226407, 0.0167222, -0.026698, -0.0208982, 0.000135365, -0.000147409, 0,
0, 0, 0, 0, 0, 0, 0, 0, 1.4648e-007, -5.933e-005, -0.00112018, -0.000486103, -8
.7511e-005, -0.00214785, -0.000236273, 0, -4.45941e-005, -0.0227922, -0.125558,
0.0242307, 0.143012, 0.070312, 0.0139858, 0, 0.0181566, -0.0403186, -0.413492, 0
.245865, 0.827098, 1.23253, 0.224671, 0, 0.471235, 2.60501, 0.607909, 0.287938,
0.670093, 1.14597, 0.195021, 0, 0.577034, 3.5431, 1.66558, 0.401313, -0.405138,
-0.201196, -0.000147715, 0, 0.0438879, 0.29581, 0.182008, 0.0400609, -0.0594662,
-0.0296587, -0.00144839, 0, 0.000182275, 0.00187326, -4.54757e-005, -0.00156468
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-3.06337e-009, 0, -2.74316e-009, -2.18192e-008, -2.14437e-007, -2.67173e-006, -3
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e-005, -0.00011398, -9.68077e-005, 9.4422e-005, 1.81319e-005, 0, 1.18675e-005, 5
.87413e-005, -3.3452e-005, -0.000233963, -0.000208466, 6.36572e-005, 1.47284e-00
5, 0, 1.27121e-005, 6.93048e-005, -4.53607e-006, -8.50923e-005, -0.000100492, -2
.17216e-005, 8.14633e-008, 0, 8.60031e-007, 5.08001e-006, -5.94227e-007, -5.4517
9e-006, -5.36543e-006, -1.45164e-006, -4.59247e-008, 0, 4.19613e-009, 4.29645e-0
08, -7.40923e-009, -4.22973e-008, -1.82156e-008, -4.30453e-009, -3.36676e-010, 0
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703, -0.0493102, -0.00123243, 0, -0.00612826, -0.728476, -2.33321, -1.17073, -1.
71946, -1.38306, -0.0785408, 0, 0.0376899, -0.30664, -1.99907, -1.76471, -3.2466
1, -3.08905, -0.185561, 0, -0.0368889, -0.349011, -1.73126, -3.55973, -3.09411,
-1.74403, -0.0566344, 0, -0.118919, -1.68495, -3.3511, -4.40987, -5.01784, -2.08
308, 0.048824, 0, -0.0278993, -0.743504, -2.00321, -4.20667, -4.22391, -1.32298,
-0.0128502, 0, -0.000213177, -0.00800543, -0.09122, -0.670836, -0.471183, -0.04
59598, -0.000410386, 0, 0, 0, 0, 0, 0, 0, 0, 0, -0.00635322, -0.651541, -2.25584
, -1.35609, -1.41849, -0.519877, -0.0122494, 0, -0.106096, -5.68458, -16.3739, -
11.6119, -15.6944, -11.4101, -0.847241, 0, 0.397286, -0.147926, -10.9373, -13.86
68, -29.57, -33.2236, -2.82668, 0, 0.312099, 0.764036, -12.4218, -20.2219, -20.5
009, -24.9569, -1.90102, 0, -0.154911, -4.77603, -14.2865, -18.1723, -30.9785, -
23.8046, -0.648778, 0, -0.0306856, -2.88572, -7.58904, -26.5314, -31.1808, -10.0
687, -0.256691, 0, -0.00160125, -0.0334881, -0.179416, -5.47666, -4.45069, -0.33
0047, -0.00137562, 0, 0, 0, 0, 0, 0, 0, 0, 0, -0.0139778, -0.843582, -2.65988, -
2.39874, -2.01515, -0.662888, -0.0129465, 0, -0.291874, -5.68548, -10.8253, -18.
066, -15.9666, -6.77953, -0.989531, 0, 0.0218158, 0.109996, -2.56759, -15.4142,
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Probe Tag Starts Stops Time
Registration 1 1 10531.2
D:\Insight-Bin\bin\release>
-------------- next part --------------
Intial Parameters =
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Starting Registration
Last Transform Parameters
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Probe Tag Starts Stops Time
Registration 1 1 614.672
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