[Insight-users] Problem of Build the ITK application
yingli fan
yf34 at drexel.edu
Wed Feb 23 09:22:21 EST 2005
Hi All,
I try to build the application of ITK , what I did : I install the ITK VTK &
FLTK and did the cmake.
My computer is MAC
When I do the make under the binary folder of Application.
I list the error and my cmakelist file.
Thanks a lot
yingli
here is the error
ld: Undefined symbols:
_fl_display
make[5]: ***
[/Applications/ITK_VTK/ITK/InsightApplication_binary/SegmentationEditorFltkG
ui/EditorFltkGui/EditorFltkGui] Error 1
make[4]: *** [default_target] Error 2
make[3]: *** [default_target_EditorFltkGui] Error 2
make[2]: *** [default_target] Error 2
make[1]: *** [default_target_SegmentationEditorFltkGui] Error 2
make: *** [default_target] Error 2
Here is my cmakelist.txt file
CMAKE_MINIMUM_REQUIRED(VERSION 1.6)
PROJECT(InsightApplications)
INCLUDE_REGULAR_EXPRESSION("^.*$")
# Tell CMake's FIND_PACKAGE command where to look for our Find<pkg>
# modules.
SET(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH}
${InsightApplications_SOURCE_DIR})
IF(NOT WIN32)
OPTION(BUILD_SHARED_LIBS "Build Insight-Applications with shared
libraries." OFF)
ENDIF(NOT WIN32)
# Don't build anything unless the version of CMake is high enough.
# The matching ELSE/ENDIF should be the last lines in the file.
IF("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}" GREATER 1.5)
FIND_PACKAGE(ITK)
IF(ITK_FOUND)
INCLUDE(${ITK_USE_FILE})
ELSE(ITK_FOUND)
MESSAGE(FATAL_ERROR
"Cannot build InsightApplications without ITK. Please set
ITK_DIR.")
ENDIF(ITK_FOUND)
#---------------------------------------------------------------------------
--
# Configure Dart testing support.
INCLUDE(${CMAKE_ROOT}/Modules/Dart.cmake)
MARK_AS_ADVANCED(TCL_TCLSH)
IF(BUILD_TESTING)
ENABLE_TESTING()
ENDIF(BUILD_TESTING)
# Determine what packages are available
# Add an option to use or not use VTK
OPTION(USE_VTK "Use VTK (The Visualization Toolkit) (some applications need
this)" OFF)
IF(USE_VTK)
FIND_PACKAGE(VTK)
IF (VTK_FOUND)
INCLUDE (${VTK_USE_FILE})
# Test for VTK using std libs
IF(NOT VTK_USE_ANSI_STDLIB)
MESSAGE("Warning. Your VTK was not built with the VTK_USE_ANSI_STDLIB
"
"option ON. Link errors may occur. Consider re-building VTK
"
"with this option ON. For MSVC 6, you MUST turn on the VTK "
"option. ITK will not link otherwise.")
ENDIF(NOT VTK_USE_ANSI_STDLIB)
# Test for VTK building Hybrid
IF(NOT VTK_USE_HYBRID)
MESSAGE("Your VTK was not built with the VTK_USE_HYBRID option ON. "
"Please reconfigure and recompile VTK with this option before
"
"trying to use it with ITK.")
SET(VTK_FOUND 0)
ENDIF(NOT VTK_USE_HYBRID)
ELSE(VTK_FOUND)
MESSAGE(FATAL_ERROR
"Cannot build InsightApplications without VTK. Please set
VTK_DIR.")
ENDIF(VTK_FOUND)
ENDIF(USE_VTK)
# Look for OpenGL.
FIND_PACKAGE(OpenGL)
IF(OPENGL_INCLUDE_PATH)
INCLUDE_DIRECTORIES(${OPENGL_INCLUDE_PATH})
ENDIF(OPENGL_INCLUDE_PATH)
# Add an option to use or not use FLTK (http://www.fltk.org)
OPTION(USE_FLTK "Use FLTK (The Fast Light Toolkit) for GUI (some
applications need this)" OFF)
IF(USE_FLTK)
FIND_PACKAGE(FLTK)
IF(FLTK_FOUND)
INCLUDE_DIRECTORIES(${FLTK_INCLUDE_DIR})
ELSE(FLTK_FOUND)
MESSAGE(FATAL_ERROR
"Cannot build InsightApplications without FLTK. Please set
FLTK_DIR.")
ENDIF(FLTK_FOUND)
ENDIF(USE_FLTK)
# The fluid-generated fltk sources have many warnings. This macro
# will disable warnings for the generated files on some compilers.
MACRO(ITK_DISABLE_FLTK_GENERATED_WARNINGS files)
IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.6)
IF(CMAKE_COMPILER_IS_GNUCXX)
FOREACH(f ${files})
STRING(REGEX REPLACE "\\.fl$" ".cxx" SRC "${f}")
STRING(REGEX REPLACE ".*/([^/]*)$" "\\1" SRC "${SRC}")
SET_SOURCE_FILES_PROPERTIES(${SRC} PROPERTIES COMPILE_FLAGS -w)
ENDFOREACH(f)
ENDIF(CMAKE_COMPILER_IS_GNUCXX)
ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.6)
ENDMACRO(ITK_DISABLE_FLTK_GENERATED_WARNINGS)
# Macro for adding resources to GUI application on the Mac
#
IF(APPLE)
FIND_PROGRAM(ITK_APPLE_RESOURCE Rez /Developer/Tools)
FIND_FILE(ITK_FLTK_RESOURCE mac.r /usr/local/include/FL)
IF(NOT ITK_FLTK_RESOURCE)
MESSAGE("Fltk resources not found, GUI application will not respond to
mouse events")
ENDIF(NOT ITK_FLTK_RESOURCE)
MACRO(ADD_GUI_EXECUTABLE name sources)
ADD_EXECUTABLE(${name} ${sources})
SET(EXEC_PATH ${EXECUTABLE_OUTPUT_PATH})
IF(NOT EXEC_PATH)
SET(EXEC_PATH ${CMAKE_CURRENT_BINARY_DIR})
ENDIF(NOT EXEC_PATH)
IF(ITK_APPLE_RESOURCE)
ADD_CUSTOM_COMMAND(SOURCE ${name}
COMMAND ${ITK_APPLE_RESOURCE}
ARGS -t APPL ${ITK_FLTK_RESOURCE} -o
${EXEC_PATH}/${name}
TARGET ${name})
ENDIF(ITK_APPLE_RESOURCE)
ENDMACRO(ADD_GUI_EXECUTABLE)
ELSE(APPLE)
MACRO(ADD_GUI_EXECUTABLE name sources)
ADD_EXECUTABLE(${name} ${sources})
ENDMACRO(ADD_GUI_EXECUTABLE)
ENDIF(APPLE)
#
#Build the Auxiliary directory on which many applications depend
SUBDIRS(Auxiliary)
#Build the example of how to do simple scalar anisotropic diffusion
#on a PNG image
SUBDIRS (AnisotropicDiffusionImageFilter)
#Build the example of various methods of segmentation using level sets.
SUBDIRS (LevelSetSegmentation)
#Build the example of how to create a static library for
# select filters in itk.
SUBDIRS (ITKFilterLib)
#Build the example of how to create a static library for
# the multi-resolution mutual information registration framework in itk.
SUBDIRS (ITKRegistrationLib)
#Build the parameter file parser necessary for several applications that
follow
SUBDIRS(StreamedWatershedSegmentation/ParameterFileParser)
# Build the StreamedWatershedSegmentation example
#SUBDIRS(StreamedWatershedSegmentation)
# Build the AntiAliasBinaryImageFilter example
SUBDIRS(AntiAliasBinaryImageFilter)
# Build the SimpleLevelSetsExample
SUBDIRS(SimpleLevelSetsExample)
# Build the FloodFilledSpatialFunctionExample
SUBDIRS(FloodFilledSpatialFunction)
# Build the Multiresolution Registration example
SUBDIRS(MultiResMIRegistration)
# Build the MI Validation application
SUBDIRS(MIValidation)
# Build the IBSR Validation applications
SUBDIRS(IBSRValidation)
# Build the multichannel tissue classification validation
SUBDIRS(MultichannelTissueClassificationValidation)
# Build the DICOMApp example to output raw and png versions of DICOM file
SUBDIRS(DICOMApp)
#Build the examples of various fourth-order level set PDEs
SUBDIRS (LevelSetSurfaceProcessing)
# Applications requiring MetaImages and Fltk GUI
IF(FLTK_FOUND)
IF(WIN32)
ADD_DEFINITIONS(-DWIN32)
ENDIF(WIN32)
SUBDIRS(DistanceMapFilter)
SUBDIRS(DicomImageViewer)
SUBDIRS(GaussianFilter)
SUBDIRS(Curves2DExtractor)
SUBDIRS(Morphogenesis)
SUBDIRS(MutualInformationEuler2DRegistration)
SUBDIRS(ImageRegistration)
SUBDIRS(ImageRegistration2D)
SUBDIRS(LandmarkInitializedMutualInformationRegistration)
SUBDIRS(RawImageReaderViewer)
SUBDIRS(VoronoiSegmentation)
SUBDIRS(SimpleFuzzyConnectedness)
SUBDIRS(ThresholdSegmentationLevelSetFltkGui)
IF(VTK_FOUND)
SUBDIRS(RegionGrowingSegmentation)
SUBDIRS(ThresholdSegmentationLevelSet)
SUBDIRS(FastMarchingLevelSet)
SUBDIRS(ShapeDetectionLevelSet)
SUBDIRS(GeodesicActiveContour)
SUBDIRS(SegmentationEditorFltkGui)
SUBDIRS(SNAP)
ENDIF(VTK_FOUND)
SUBDIRS(ImageViewer)
SUBDIRS(ImageColorViewer)
ENDIF(FLTK_FOUND)
# MetaImage Utilities
SUBDIRS(MetaImageImporter)
SUBDIRS(MetaImageReadWrite)
# Test the conditions for building the MRIBiasCorrection example
SUBDIRS(MRIBiasCorrection)
# Add an option to build FEM applications
SUBDIRS(FEM)
# Add an option to build or not build the FuzzyConnectedness example
SUBDIRS(FuzzyConnectedness)
# Add an option to build or not build the
# GaussianMinimumErrorClassifier example
SUBDIRS(GaussianMinimumErrorClassifier)
# Add an option to build or not build the
EllipsoidInteriorExteriorSpatialFunction example
SUBDIRS(EllipsoidInteriorExteriorSpatialFunction)
# Add an option to build or not build the
SymmetricEllipsoidInteriorExteriorSpatialFunction example
SUBDIRS(SymmetricEllipsoidInteriorExteriorSpatialFunction)
# Test the conditions for building the ThinPlateSplines example
IF(VTK_FOUND)
IF(FLTK_FOUND)
SUBDIRS(ThinPlateSplines)
ENDIF(FLTK_FOUND)
IF(VTK_WRAP_TCL)
SUBDIRS(MRIRegistration vtkITK SegmentationEditor)
ENDIF(VTK_WRAP_TCL)
SET (VTK_AND_ITK_WRAPPED 0)
IF(VTK_WRAP_PYTHON AND ITK_CSWIG_PYTHON)
SET(VTK_AND_ITK_WRAPPED 1)
ENDIF(VTK_WRAP_PYTHON AND ITK_CSWIG_PYTHON)
IF(VTK_WRAP_TCL AND ITK_CSWIG_TCL)
SET(VTK_AND_ITK_WRAPPED 1)
ENDIF(VTK_WRAP_TCL AND ITK_CSWIG_TCL)
IF(VTK_AND_ITK_WRAPPED)
SUBDIRS(ConnectVTKITK)
ENDIF(VTK_AND_ITK_WRAPPED)
ENDIF(VTK_FOUND)
LINK_LIBRARIES (
ITKAlgorithms
ITKCommon
ITKBasicFilters
)
# If the version of CMake was too old, complain and build nothing.
# These should be the last lines in this file.
ELSE("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}" GREATER 1.5)
MESSAGE(SEND_ERROR
"This version of CMake is too old to build InsightApplications. "
"Please upgrade to CMake 1.6.")
ENDIF("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}" GREATER 1.5)
*******************************************************
Yingli Fan
Laboratory for Bioimaging and Anatomical Informatics
Department of Neurobiology & Anatomy
Drexel University, College of Medicine
2900 Queen Lane PA 19129
Tel: 215-9918455 Fax: 215-843-9367
Email: Yingli.Fan at drexel.edu
*******************************************************
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