[Insight-users] Re: help with wrapping
of itkVoronoiSegmentationImageFilter
Luis Ibanez
luis.ibanez at kitware.com
Tue Nov 9 17:59:14 EST 2004
Hi Bruno,
You probably missed that we already added the
VoronoiSegmentationFilter to the wrapping.
http://www.itk.org/cgi-bin/viewcvs.cgi/Wrapping/CSwig/Algorithms/wrap_itkVoronoiSegmentationImageFilter.cxx?rev=1.1&root=Insight&sortby=date&view=log
You just need to update your CVS checkout and
rebuild it. Note that you don't need to rebuild
from scratch nor do a 'make clean', just do 'make'
and the extra classes should be wrapped.
You may want to use the test example that we added
in the CMakeLists.txt file in
Insight/Testing/Code/Algorithms
Note that this test is using as input the images in
Insight/Examples/Data
Please let us know if you find any problems,
Thanks
Luis
---------------------
Bruno Cassaro wrote:
> Thanks a lot Luiz for your answer!
>
> I tried to Solve my problems with your propositions and I still have few
> doubts.
>
>
> When I use the three steps process for adding a class to wrapping and
> rebuild my project , na error appear from
> itkVoronoiSegmentationImageFilterBase and itkVononoiDiagram2D. Error Code
>
> {\rtf1\ansi\ansicpg1252\deff0\deflang1046{\fonttbl{\f0\fswiss\fcharset0
> Arial;}}
>
> {\*\generator Msftedit 5.41.15.1507;}\viewkind4\uc1\pard\f0\fs20 Building
> wrap_ITKAlgorithmsPython.xml from
> C:\\CVS-1.8\\InsightToolkit-1.8.1\\Wrapping\\CSwig\\Algorithms\\wrap_ITKAlgo
> rithmsPython.cxx\par
>
> Building wrap_ITKAlgorithmsPython.idx from
> C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_ITK
> AlgorithmsPython.idx.rule\par
>
> Building wrap_ITKAlgorithmsPythonPython.cxx from
> C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_ITK
> AlgorithmsPythonPython.cxx.rule\par
>
> create swig package ITKAlgorithmsPython\par
>
> init module: itkCurvatureFlowImageFilter\par
>
> init module: itkDemonsRegistrationFilter\par
>
> init module: itkHistogramMatchingImageFilter\par
>
> init module: itkImageRegistrationMethod\par
>
> init module: itkImageToImageMetric\par
>
> init module: itkMeanSquaresImageToImageMetric\par
>
> init module: itkMutualInformationImageToImageMetric\par
>
> init module: itkMultiResolutionImageRegistrationMethod\par
>
> init module: itkNormalizedCorrelationImageToImageMetric\par
>
> init module: itkOtsuThresholdImageCalculator\par
>
> init module: itkMeanReciprocalSquareDifferenceImageToImageMetric\par
>
> init module: itkThresholdSegmentationLevelSetImageFilter\par
>
> init module: itkGeodesicActiveContourLevelSetImageFilter\par
>
> init module: itkShapeDetectionLevelSetImageFilter\par
>
> init module: itkCurvesLevelSetImageFilter\par
>
> init module: itkNarrowBandLevelSetImageFilter\par
>
> init module: itkNarrowBandCurvesLevelSetImageFilter\par
>
> init module: itkMattesMutualInformationImageToImageMetric\par
>
> init module: itkPDEDeformableRegistrationFilter\par
>
> init module: itkRecursiveMultiResolutionPyramidImageFilter\par
>
> init module: itkVoronoiSegmentationImageFilter\par
>
> init module: itkWatershedImageFilter\par
>
> Building wrap_itkVoronoiSegmentationImageFilterPython.cxx from
> C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_itk
> VoronoiSegmentationImageFilterPython.cxx.rule\par
>
> Warning itk::Mesh<double,2,itk::DefaultDynamicMeshTraits<double, 2, 2,
> double, float, double> >\par
>
> has a class hierarchy that has wrapping gaps.\par
>
> The class hierarchy wrapping is as follows:\par
>
> Not wrapped:
> itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
> at,double)>)>\par
>
> Wrapped: itk::DataObject\par
>
> Wrapped: itk::Object\par
>
> Wrapped: itk::LightObject\par
>
> Warning itk::VoronoiDiagram2D<double>\par
>
> has a class hierarchy that has wrapping gaps.\par
>
> The class hierarchy wrapping is as follows:\par
>
> Not wrapped:
> itk::Mesh<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,float,d
> ouble)>)>\par
>
> Not wrapped:
> itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
> at,double)>)>\par
>
> Wrapped: itk::DataObject\par
>
> Wrapped: itk::Object\par
>
> Wrapped: itk::LightObject\par
>
> Warning itk::VoronoiSegmentationImageFilter<itk::Image<unsigned char,
> 2>,itk::Image<unsigned char, 2>,itk::Image<unsigned char, 2> >\par
>
> has a class hierarchy that has wrapping gaps.\par
>
> The class hierarchy wrapping is as follows:\par
>
> Not wrapped: itk::VoronoiSegmentationImageFilterBase<(itk::Image<(unsigned
> char,2)>,itk::Image<(unsigned char,2)>,itk::Image<(unsigned char,2)>)>\par
>
> Wrapped: itk::ImageToImageFilter<(itk::Image<(unsigned
> char,2)>,itk::Image<(unsigned char,2)>)>\par
>
> Wrapped: itk::ImageSource<(itk::Image<(unsigned char,2)>)>\par
>
> Wrapped: itk::ProcessObject\par
>
> Wrapped: itk::Object\par
>
> Wrapped: itk::LightObject\par
>
> Error executing c:\\windows\\system32\\cmd.exe.\par
>
> \par
>
> ALL_BUILD - 1 error(s), 3 warning(s)\par
>
> }
>
>
>
> So I use the three steps process for this classes to , but it didn't work
> properly, due parameter or type error. I take the class
> wrap_itkVoronoiSegmentationImageFilter.cxx from CVS as example.
>
> the error code in Microsoft Visual c++:
>
> {\rtf1\ansi\ansicpg1252\deff0\deflang1046{\fonttbl{\f0\fswiss\fcharset0
> Arial;}}
> {\*\generator Msftedit 5.41.15.1507;}\viewkind4\uc1\pard\f0\fs20 create swig
> package ITKAlgorithmsPython\par
> init module: itkCurvatureFlowImageFilter\par
> init module: itkDemonsRegistrationFilter\par
> init module: itkHistogramMatchingImageFilter\par
> init module: itkImageRegistrationMethod\par
> init module: itkImageToImageMetric\par
> init module: itkMeanSquaresImageToImageMetric\par
> init module: itkMutualInformationImageToImageMetric\par
> init module: itkMultiResolutionImageRegistrationMethod\par
> init module: itkNormalizedCorrelationImageToImageMetric\par
> init module: itkOtsuThresholdImageCalculator\par
> init module: itkMeanReciprocalSquareDifferenceImageToImageMetric\par
> init module: itkThresholdSegmentationLevelSetImageFilter\par
> init module: itkGeodesicActiveContourLevelSetImageFilter\par
> init module: itkShapeDetectionLevelSetImageFilter\par
> init module: itkCurvesLevelSetImageFilter\par
> init module: itkNarrowBandLevelSetImageFilter\par
> init module: itkNarrowBandCurvesLevelSetImageFilter\par
> init module: itkMattesMutualInformationImageToImageMetric\par
> init module: itkPDEDeformableRegistrationFilter\par
> init module: itkRecursiveMultiResolutionPyramidImageFilter\par
> init module: itkVoronoiDiagram2D\par
> init module: itkVoronoiSegmentationImageFilter\par
> init module: itkVoronoiSegmentationImageFilterBase\par
> init module: itkWatershedImageFilter\par
> Building wrap_itkWatershedImageFilterPython.cxx from
> C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_itk
> WatershedImageFilterPython.cxx.rule\par
> Warning itk::WatershedImageFilter<itk::Image<double, 3> >\par
> has a class hierarchy that has wrapping gaps.\par
> The class hierarchy wrapping is as follows:\par
> Not wrapped:
> itk::ImageToImageFilter<(itk::Image<(double,3)>,itk::Image<(unsigned
> long,3)>)>\par
> Wrapped: itk::ImageSource<(itk::Image<(unsigned long,3)>)>\par
> Wrapped: itk::ProcessObject\par
> Wrapped: itk::Object\par
> Wrapped: itk::LightObject\par
> Warning itk::WatershedImageFilter<itk::Image<double, 2> >\par
> has a class hierarchy that has wrapping gaps.\par
> The class hierarchy wrapping is as follows:\par
> Not wrapped:
> itk::ImageToImageFilter<(itk::Image<(double,2)>,itk::Image<(unsigned
> long,2)>)>\par
> Wrapped: itk::ImageSource<(itk::Image<(unsigned long,2)>)>\par
> Wrapped: itk::ProcessObject\par
> Wrapped: itk::Object\par
> Wrapped: itk::LightObject\par
> Warning itk::WatershedImageFilter<itk::Image<float, 3> >\par
> has a class hierarchy that has wrapping gaps.\par
> The class hierarchy wrapping is as follows:\par
> Not wrapped:
> itk::ImageToImageFilter<(itk::Image<(float,3)>,itk::Image<(unsigned
> long,3)>)>\par
> Wrapped: itk::ImageSource<(itk::Image<(unsigned long,3)>)>\par
> Wrapped: itk::ProcessObject\par
> Wrapped: itk::Object\par
> Wrapped: itk::LightObject\par
> Warning itk::WatershedImageFilter<itk::Image<float, 2> >\par
> has a class hierarchy that has wrapping gaps.\par
> The class hierarchy wrapping is as follows:\par
> Not wrapped:
> itk::ImageToImageFilter<(itk::Image<(float,2)>,itk::Image<(unsigned
> long,2)>)>\par
> Wrapped: itk::ImageSource<(itk::Image<(unsigned long,2)>)>\par
> Wrapped: itk::ProcessObject\par
> Wrapped: itk::Object\par
> Wrapped: itk::LightObject\par
> Building wrap_itkVoronoiSegmentationImageFilterPython.cxx from
> C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_itk
> VoronoiSegmentationImageFilterPython.cxx.rule\par
> Warning itk::Mesh<double,2,itk::DefaultDynamicMeshTraits<double, 2, 2,
> double, float, double> >\par
> has a class hierarchy that has wrapping gaps.\par
> The class hierarchy wrapping is as follows:\par
> Not wrapped:
> itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
> at,double)>)>\par
> Wrapped: itk::DataObject\par
> Wrapped: itk::Object\par
> Wrapped: itk::LightObject\par
> Warning itk::VoronoiDiagram2D<double>\par
> has a class hierarchy that has wrapping gaps.\par
> The class hierarchy wrapping is as follows:\par
> Not wrapped:
> itk::Mesh<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,float,d
> ouble)>)>\par
> Not wrapped:
> itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
> at,double)>)>\par
> Wrapped: itk::DataObject\par
> Wrapped: itk::Object\par
> Wrapped: itk::LightObject\par
> Warning itk::VoronoiSegmentationImageFilter<itk::Image<unsigned char,
> 2>,itk::Image<unsigned char, 2>,itk::Image<unsigned char, 2> >\par
> has a class hierarchy that has wrapping gaps.\par
> The class hierarchy wrapping is as follows:\par
> Not wrapped: itk::VoronoiSegmentationImageFilterBase<(itk::Image<(unsigned
> char,2)>,itk::Image<(unsigned char,2)>,itk::Image<(unsigned char,2)>)>\par
> Wrapped: itk::ImageToImageFilter<(itk::Image<(unsigned
> char,2)>,itk::Image<(unsigned char,2)>)>\par
> Wrapped: itk::ImageSource<(itk::Image<(unsigned char,2)>)>\par
> Wrapped: itk::ProcessObject\par
> Wrapped: itk::Object\par
> Wrapped: itk::LightObject\par
> Error executing c:\\windows\\system32\\cmd.exe.\par
> \par
> ALL_BUILD - 1 error(s), 155 warning(s)\par
> }
>
>
> Is it realy necesssary adding this classes to wrapping ??? Because it seems
> to be hierarchy problem. ;-)
>
> Did I do something wrong??
>
> Updating my CVS checkout of ITK , but I didn´t see any thing about those
> classes.
>
> Thanks
>
> Bruno Cassaro
>
>
>
>
>
>
>
>
> ----- Original Message -----
> From: "Luis Ibanez" <luis.ibanez at kitware.com>
> To: "Luis Ibanez" <luis.ibanez at kitware.com>
> Cc: "Bruno Cassaro" <bcdalava at cenpra.gov.br>; <insight-users at itk.org>
> Sent: Wednesday, October 27, 2004 6:43 PM
> Subject: Re: [Insight-users] help with wrapping of
> itkVoronoiSegmentationImageFilter
>
>
>
>>Bruno,
>>
>>You will find new examples on how to use the
>>VoronoiSegmenationImageFilter in the directory
>>
>> Insight/Examples/Segmentation/
>>
>>
>>They are
>>
>> VoronoiSegmenationImageFilter.py
>> VoronoiSegmenationImageFilter.tcl
>> VoronoiSegmenationImageFilter.java
>>
>>
>>Please let us know if you find any problems,
>>
>>
>> Thanks
>>
>>
>> Luis
>>
>>
>>===========================================
>>Luis Ibanez wrote:
>>
>>
>>>Hi Bruno,
>>>
>>>Thanks for pointing this out.
>>>
>>>We added this issue as Bug # 1292
>>>http://www.itk.org/Bug/bug.php?op=show&bugid=1292&pos=0
>>>
>>>The wrapper for this class is being added as we speak.
>>>
>>>----------
>>>
>>>The process for adding a class to the wrapping involves
>>>three steps:
>>>
>>>A) Create a wrap_itkCLASSNAME.cxx file in one of the
>>> directories in
>>>
>>> Insight/Wrapping/CSWig
>>>
>>> This file will specify the C++ instantiations that
>>> are going to be wrapped into Tcl, Python and Java.
>>>
>>>
>>>B) Edit the master file of that directory. In this
>>> case the file
>>>
>>>
>>> wrap_ITKAlgorithms.cxx
>>>
>>> and add the group of the new instantiations of this
>>> filter. That's a line like
>>>
>>> ITK_WRAP_GROUP(itkVoronoiSegmentationImageFilter),
>>>
>>>
>>>C) Edit the CMakeLists.txt file in the same directory
>>> and add the new wrap_itkCLASSNAME.cxx file to the
>>> list of files in WRAP_SOURCE.
>>>
>>>
>>>We just did this procedure in the CVS repository.
>>>Please update your CVS checkout of ITK and rebuild
>>>the wrapping.
>>>
>>>
>>>
>>>Please let us know if you have further questions,
>>>
>>>
>>>
>>> Thanks
>>>
>>>
>>>
>>> Luis
>>>
>>>
>>>
>>>--------------------
>>>Bruno Cassaro wrote:
>>>
>>>
>>>>*Hi ITK user's .....*
>>>>** *I'm trying to use itkVoronoiSegmentationImageFilter , and use
>>>>python for it. But I can't find the class. When i was looking for it,
>>>>i perceive in my cmakelist don't have
>>>>itkVoronoiSegmentationImageFilter wrap.*
>>>>** *Updating my itk by CVS i note what a have the
>>>>itkVoronoiSegmentationImageFilter class in c++, but it didn't be
>>>>wrapped in python by cmake how the others classes were. The stretch of
>>>>my cmake code ...*
>>>>** *# create the ITKAlgorithmsTcl libraries
>>>>SET(WRAP_SOURCES
>>>> wrap_itkCurvatureFlowImageFilter
>>>> wrap_itkHistogramMatchingImageFilter
>>>> wrap_itkImageRegistrationMethod
>>>> wrap_itkImageToImageMetric
>>>> wrap_itkMattesMutualInformationImageToImageMetric
>>>> wrap_itkMeanSquaresImageToImageMetric
>>>> wrap_itkMinMaxCurvatureFlowImageFilter
>>>> wrap_itkMutualInformationImageToImageMetric
>>>> wrap_itkMultiResolutionImageRegistrationMethod
>>>> wrap_itkNormalizedCorrelationImageToImageMetric
>>>> wrap_itkOtsuThresholdImageCalculator
>>>> wrap_itkMeanReciprocalSquareDifferenceImageToImageMetric
>>>> wrap_itkRecursiveMultiResolutionPyramidImageFilter
>>>> wrap_itkSimpleFuzzyConnectednessImageFilterBase
>>>> wrap_itkSimpleFuzzyConnectednessScalarImageFilter
>>>> wrap_itkThresholdSegmentationLevelSetImageFilter
>>>> wrap_itkGeodesicActiveContourLevelSetImageFilter
>>>> wrap_itkShapeDetectionLevelSetImageFilter
>>>> wrap_itkCurvesLevelSetImageFilter
>>>> wrap_itkNarrowBandCurvesLevelSetImageFilter
>>>>)*
>>>>** ** *Can someone help me?*
>>>>*how can adjust my cmake to do the itkVoronoiSegmentationImageFilter
>>>>in python ??*
>>>>
>>>>Regards,
>>>>Bruno Cassaro
>>>>*
>>>>*
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>
>>>------------------------------------------------------------------------
>>>
>>>>_______________________________________________
>>>>Insight-users mailing list
>>>>Insight-users at itk.org
>>>>http://www.itk.org/mailman/listinfo/insight-users
>>>
>>>
>>>
>>>
>>>
>>>_______________________________________________
>>>Insight-users mailing list
>>>Insight-users at itk.org
>>>http://www.itk.org/mailman/listinfo/insight-users
>>>
>>>
>>
>>
>>
>>
>>
>
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