[Insight-users] FW:
raghu venkatram
raghu_420 at hotmail.com
Tue, 02 Mar 2004 19:19:51 +0000
Jim,
I am using ITK 1.4, 1.6 also gives the same error.
the crash point is in itkDataObject.cxx,
Thank you for replying.
Raghu
>From: "Miller, James V (Research)" <millerjv at crd.ge.com>
>To: "'raghu venkatram'" <raghu_420 at hotmail.com>,insight-users at itk.org
>Subject: RE: [Insight-users] FW:
>Date: Tue, 2 Mar 2004 13:51:49 -0500
>
>Raghu,
>
>Do you know version of ITK you are using. There have been a number of bug
>fixes in Utilities/DICOMParser to address some issues with "invalid" DICOM
>fields (null length records). An update of ITK may help.
>
>Is the crash point within the DICOMAppHelper.cxx file?
>
>Jim
>
>
>-----Original Message-----
>From: raghu venkatram [mailto:raghu_420 at hotmail.com]
>Sent: Tuesday, March 02, 2004 1:35 PM
>To: insight-users at itk.org
>Cc: raghu_420 at hotmail.com
>Subject: [Insight-users] FW:
>
>
>Hello,
>I am using the dicom imageseriesreader, to read in a series of dicom
>images.
>
>My program arguments are:
>F:\itk\data\MR\temp1\ 0
>
>I only have one series in this directory, and nothing other than the dicom
>files
>are in this directory.
>Its reads through, gets the filenames in the series and gives an "abnormal
>program termination error". Debugging shows that the it crashes on the
>second
>file in the series. I would appreciate if anyone could help me out. also i
>see
>Chunyan had postes a similar problem.
>
>If i am able to read in a series of dicom images, i want to use one of the
>registration algorithms and pass the two series, I am not sure if this
>would
>give me 3d registration. I tried using the analyze format, with deformable
>registration, it takes close to 40 mins, which makes me think i am doing
>something wrong. I would be glad if somebody could help me sort things out.
>
>
>All my dicom images are viewable using the QT viewr, MRICro.
>
>Thanks in advance
>Raghu Venkatram
>
>/*=========================================================================
>
> Program: Insight Segmentation & Registration Toolkit
> Module: $RCSfile: DicomSeriesReadImageWrite.cxx,v $
> Language: C++
> Date: $Date: 2003/12/30 21:13:04 $
> Version: $Revision: 1.2 $
>
> Copyright (c) Insight Software Consortium. All rights reserved.
> See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for
>details.
>
> This software is distributed WITHOUT ANY WARRANTY; without even
> the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE. See the above copyright notices for more information.
>
>=========================================================================*/
>
>// Software Guide : BeginLatex
>//
>// This example illustrates how to read a DICOM series into a volume
>// and then save this volume in another file format.
>//
>// Software Guide : EndLatex
>
>/*=========================================================================
>
> Program: Insight Segmentation & Registration Toolkit
> Module: $RCSfile: itkDICOMImageSeriesTest.cxx,v $
> Language: C++
> Date: $Date: 2003/09/10 14:30:10 $xgoto-l
>
> Version: $Revision: 1.5 $
>
> Copyright (c) Insight Software Consortium. All rights reserved.
> See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for
>details.
>
> This software is distributed WITHOUT ANY WARRANTY; without even
> the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE. See the above copyright notices for more information.
>
>=========================================================================*/
>#if defined(_MSC_VER)
>#pragma warning ( disable : 4786 )
>#endif
>#include "itkDICOMImageIOFactory.h"
>#include "itkDICOMImageIO2.h"
>#include "itkImageSeriesReader.h"
>#include "itkDICOMSeriesFileNames.h"
>#include "itkAnalyzeImageIO.h"
>#include "itkImageFileWriter.h"
>#include
>"F:/itk/InsightToolkit-1.4.0/Testing/Code/BasicFilters/itkFilterWatcher.h"
>
>int main(int ac, char* av[])
>{
>
> typedef itk::AnalyzeImageIO ImageIOType;
>
> if(ac < 3)
> {
> std::cerr << "Usage: " << av[0] << " DicomDirectory
>ReverseOrder(0/1)\n";
> return EXIT_FAILURE;
> }
>
> typedef itk::Image<unsigned short,3> ImageNDType;
> typedef itk::Image<unsigned short,3> Image3DType;
> typedef itk::ImageSeriesReader<ImageNDType> ReaderType;
>
> itk::DICOMImageIO2::Pointer io = itk::DICOMImageIO2::New();
>
> // Get the DICOM filenames from the directory
> itk::DICOMSeriesFileNames::Pointer names =
>itk::DICOMSeriesFileNames::New();
> names->SetDirectory(av[1]);
>
> ReaderType::Pointer reader = ReaderType::New();
> reader->SetFileNames(names->GetFileNames());
> reader->SetImageIO(io);
> std::cout << names;
>
> FilterWatcher watcher(reader);
>
> try
> {
> if (atoi(av[2]))
> {
> reader->ReverseOrderOn();
> }
> reader->Update();
> reader->GetOutput()->Print(std::cout);
> }
> catch (itk::ExceptionObject &ex)
> {
> std::cout << ex;
> return EXIT_FAILURE;
> }
>
>/*
> typedef itk::ImageFileWriter< Image3DType > WriterType;
> WriterType::Pointer writer = WriterType::New();
>
> std::cout << "Writing the image as " << std::endl << std::endl;
> std::cout << av[2] << std::endl << std::endl;
>
> writer->SetFileName( "out.hdr" );
> ImageIOType::Pointer analyzeIO = ImageIOType::New();
> writer->SetImageIO(analyzeIO);
>
> writer->SetInput( reader->GetOutput() );
>
> try
> {
> writer->Update();
> }
> catch (itk::ExceptionObject &ex)
> {
> std::cout << ex;
> return EXIT_FAILURE;
> }
>
>*/
>
>
> return EXIT_SUCCESS;
>
>}
>
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