[Insight-users] Results of Demons Deformable Registration

Thu, 19 Feb 2004 14:58:50 -0800

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Hi Hari,

What are the spacing values of your images?
Could you do an experiment for me? Can you repeat your registration =
using
either the cvs ITK or the updated DemonsRegistrationFunction class =
attached?

Thanks,
Lydia

> -----Original Message-----
> From: Hari sundar [mailto:hsundar at seas.upenn.edu]
> Sent: Thursday, February 19, 2004 2:36 PM
> To: Lydia Ng
> Subject: RE: [Insight-users] Results of Demons Deformable Registration
>=20
> Hi Lydia,
>=20
> I am using ITK 1.6. I am using it straight, this is not in a =
multi-scale
> framework. Will that make a difference ?
>=20
> The other image looks almost the same and has the same size/intensity
> ranges (same subject, same machine, same modality). Therefore, I did =
not
> use the histogram matching presprocessing.
>=20
> It's the simplest possible pipeline. I don't know why the images look
> corrupted.
>=20
> thanks,
> -Hari
>=20
> ------------------------------------------------------
> The Pipeline
> ------------------------------------------------------
> fixedImageReader->SetFileName( fixed );
> movingImageReader->SetFileName( moving );
>=20
> fixedImageCaster->SetInput( fixedImageReader->GetOutput() );
> movingImageCaster->SetInput( movingImageReader->GetOutput() );
>=20
> filter->SetFixedImage( fixedImageCaster->GetOutput() );
> filter->SetMovingImage( movingImageCaster->GetOutput() );
>=20
> filter->SetNumberOfIterations( 150 );
> filter->SetStandardDeviations( 5.0 );
>=20
> filter->Update();
>=20
>=20
> fieldWriter->SetInput( filter->GetOutput() );
> fieldWriter->SetFileName(defs);
>=20
> fieldWriter->Update();
>=20
> FixedImageType::Pointer fixedImage =3D fixedImageReader->GetOutput();
>=20
> warper->SetInput( movingImageReader->GetOutput() );
> warper->SetInterpolator( interpolator );
> warper->SetOutputSpacing( fixedImage->GetSpacing() );
> warper->SetOutputOrigin( fixedImage->GetOrigin() );
> warper->SetDeformationField( filter->GetOutput() );
>=20
> writer->SetFileName( warp );
>=20
> caster->SetInput( warper->GetOutput() );
> writer->SetInput( caster->GetOutput()   );
> writer->Update();
>=20
> ---------------------------------------------------------------
> On Thu, 2004-02-19 at 16:40, Lydia Ng wrote:
> > Hari,
> >
> > Which version of ITK are you using?
> > Are you using demons straight or in a multi-scale framework?
> > You only posted one image (orig.jpg) what does the other image look
> like?
> > Did you do any histogram matching preprocessing before hand? If so, =
have
> you
> > check if the output looks ok?
> >
> > - Lydia
> >
> > > -----Original Message-----
> > > From: Hari sundar [mailto:hsundar at seas.upenn.edu]
> > > Sent: Thursday, February 19, 2004 1:08 PM
> > > To: Insight-users at itk.org
> > > Subject: [Insight-users] Results of Demons Deformable Registration
> > >
> > > Hi,
> > >
> > > I tried to use the demons deformable registration example =
(modified)
> to
> > > register two 3D MR datasets. The registration results seem to be
> culled
> > > at some intensity level. Please see the attched images.
> > >
> > > Why is this happening ?
> > >
> > > thanks,
> > > -Hari
> > >
> >

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------_=_NextPart_001_01C3F73B.F03AA08A
Content-Type: application/octet-stream;
	name="itkDemonsRegistrationFunction.h"
Content-Transfer-Encoding: base64
Content-Description: itkDemonsRegistrationFunction.h
Content-Disposition: attachment;
	filename="itkDemonsRegistrationFunction.h"

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