[Insight-users] DicomSeries and ImageViewer
Luis Ibanez
luis . ibanez at kitware . com
Mon, 15 Sep 2003 15:21:46 -0400
Hi Sandy,
There are some historical issues here.
The ImageViewer application was made much earlier than
the DicomSerierReader, and the functionality from the new
SeriesReader has not been added to the ImageViewer for
reading Dicom directly.
You could try one of the two following options:
1) Look at the example using the DicomSeries
and merge its code with the Image viewer
in order to get a DicomImageViewer.
2) Create a metaimage header for you set of Dicom
files, and load it directly with the ImageViewer.
The easy way to do this is to use the MetaImageImporter
application which will prompt you on the command line
for the information needed to put your images together
in a metaimage.
Please let us know if you have further questions.
Thanks,
Luis
--------------------------------
Sandy April wrote:
> Hi Luis,
> Your steps for running Insight application was very useful, I am able
> to run all the applications.I am trying to display series of dicom
> images, can you let me know what should I follow. I followed the
> mailings that were posted last week about this, i tried using
> itkdicomseriestest, but got linking errors. Should I use insight
> toolkit for this or can I make a seperate workspace for
> itkdicomseriestest. Thank you in advance.
>
>
> wrote:
>
>
> Hi Alejandro,
>
> This errors mean that you haven't configured FLTK.
>
> Please do the following:
>
> Run ccmake again (you seem to be working on Unix)
> pass to the advanced mode (by typing "t" )
>
> Then configure the FLTK related entries as
> was explained in Step 10 of the message:
> http://www . itk . org/pipermail/insight-users/2003-September/004803 . html
>
> If you miss to configure FTLK, none of the applications
> reguiring FLTK will be built. (ImageViewer among them).
>
>
> Please *DO NOT* run ccmake on the subdirectories.
>
> The applications have been arranged to be configured
> from the top directory "InsightApplications". The reason
> for arranging the applications this way is that there are many
> of them and for testing purposes it is more consistent to have
> a top configurarion.
>
> Also, note that in Unix you *MUST* install F! LTK. That is, after
> building it, you must do the "make install" process. You can
> choose any directory for installing it, but make sure you perform
> the installation since a number of Header files are renamed during
> this process. [ This is only if you are building FLTK by yourself
> instead of using one already installed in your system ]
>
>
>
> Regards,
>
>
> Luis
>
>
> ------------------------
> Alejandro Frangi wrote:
> > Luis,
> >
> > I still get the following Cmake problem when trying to compile the
> > viewer. Any idea?
> > Also, why so many applications do not compile by themselves? The
> error
> > below comes when trying to ccmake from the ImageViewer directory as
> > starting from the application directory does not build this and many
> > other application.
> >
> > Alex
> >
> > CMake Error: Error in cmake code at
> > /extra/local/src/InsightApplications/ImageViewer/CMakeLists.txt:22:
> > U! nknown CMake command "ADD_GUI_EXECUTABLE".
> >
> > CMake Error: Error in cmake code at
> > /extra/local/src/InsightApplications/ImageViewer/CMakeLists.txt:28:
> > FLTK_WRAP_UI called with FLTK_WRAP_UI undefined
> >
> > CMake Error: Error in cmake code at
> > /extra/local/src/InsightApplications/ImageViewer/CMakeLists.txt:29:
> > Unknown CMake command "ITK_DISABLE_FLTK_GENERATED_WARNINGS".
> >
> >
> >
> > -----Mensaje original-----
> > De: Luis Ibanez [mailto:luis . ibanez at kitware . com]
> > Enviado el: sábado, 06 de septiembre de 2003 12:54
> > Para: Alejandro Frangi
> > CC: insight-users at public . kitware . com
> > Asunto: Re: [Insight-users] Build errors during ImageViewer
> application
> >
> >
> > HI Alejandro,
> >
> > It seems that you are using version 1.2.
> >
> > We are about to release version 1.4, most
> > of these third-party library dependencies
> > have been solved si! nce version 1.2. The VXL
> > libraries have also been renamed.
> >
> > You may want to give it a try to the CVS
> > version, which is pretty much what you will
> > see in ITK 1.4.
> >
> > You can get a tarball from WinCVS at
> >
> http://www . itk . org/cgi-bin/viewcvs . cgi/cvs_root . tar . gz?tarball=1&cvsroot
> > =Insight
> >
> > You may want to look at the previous message
> > concerning the typical procedure for building the applications
> >
> http://www . itk . org/pipermail/insight-users/2003-September/004803 . html
> >
> >
> > Please let us know if you find any problems.
> >
> >
> > Thanks
> >
> >
> > Luis
> >
> >
> >
> > ----------------------
> > Alejandro Frangi wrote:
> >
> >>Luis,
> >>
> >> One thing. I also had some problems in building the
> applications. In
> >
> > my
> >
> >>opinion you do not easily compile all of! them. For instance, in
> Cmake
> >
> > i
> >
> >>could noy see any way to say where do you have the GLUT libs. On the
> >>other hand, the compilation of ImageViewer depends on having them in
> >>your system. I do have them but somehow they are not recognized
> by the
> >>cmake, and ImageViewer does not get compiled. Any idea?
> >>
> >> Another point is that some of the applications want to link to
> >>libVXLNumerics. But I do not know how to get this lib from the
> Insight
> >>installation. I do get a libITKNumerics from the vxl subdir. So,
> what
> >>happens? Are there two versions of the same lib? Why the
> applications
> >
> > do
> >
> >>not link to libITKNumerics ?
> >>
> >> Thanks for any clue.
> >>
> >> Alex
> >>
> >>-----Mensaje original-----
> >>De: insight-users-admin at itk . org [mailto:insight-users-admin at itk . org]
> >
> > En
> >
> >>nombre de Luis Ibanez
> >>Enviado el: jueves, 04 de septiembre de 2003 15:40
> >>Para: Sandy April
> >>CC: 'insight-users at itk . org'
> >>Asunto: Re: [Insight-users] Build errors during ImageViewer
> >
> > application
> >
> >>
> >>Hi Sandy,
> >>
> >>It is better to keep InsightApplications in a separate folder from
> >>Insight. CMake allow you to select any directory. Simply create a
> >>binary directory for building InsightApplications, and when you
> >>configure with CMake, provide both the Source and Binary directories
> >
> > for
> >
> >>InsightApplications.
> >>
> >>You will be prompted for the ITK_DIR directory (where you built
> ITK),
> >>and then you will have options for selecting FLTK and VTK.
> >>
> >>Please let us know if you find any problem,
> >>
> >>
> >>Thanks
> >>
> >>
> >> Luis.
> >>
> >>
> >>----------------------
> >>Sandy April wrote:
> >>
> >>
> >>
> >>>Hi Luis,
> >>>Sorry I needed to confirm again.I have downloaded Insight toolkit,
> >>>cmake in a folder called itk.I have created a folder BITK in
> that as a
> >>
> >>
> >>>binary folder.I did setup cmake for Insight toolkit and BITK. I
> was
> >>>able to run itk. Now I was trying to run insight
> applications.should I
> >>
> >>
> >>>include this insight application folder in Insight toolkit
> folder or
> >>>should I be having the application as a seperate folder in itk
> >>>directory and setup cmake for the application. Please guide me
> through
> >>>
> >>>*/Luis Ibanez /* wrote:
> >>>
> >>>
> >>> Hi Sandy,
> >>>
> >>>
> >>> Your configu! ration is missing to link with ITK libraries.
> >>>
> >>> Did you configure InsightApplications using CMake ?
> >>>
> >>> Did you run CMake at the top level of the InsightApplication
> >>> directory ? (not in one of the subdirectories).
> >>>
> >>> Did you provide the binary directory where you built ITK ?
> >>>
> >>>
> >>>
> >>> Luis
> >>>
> >>>
> >>>
> >>> --------------------
> >>> Sandy Gowda wrote:
> >>> > Hi,
> >>> > I have tried to run ImageViewer application. There were no
> >>> compilation
> >>> > error when I try to execute it gave me following errors. It gave
> >>
> >>90
> >>
> >>
> >>> > errors but I am attaching some errors. Please let me know what I
> >>> should do.
> >>> >
> >>> > --------------------Configuration: itkImageViewer - Win32
> >>> > Debug--------------------
> >>> > Linking...
> >>> > itkImageViewer.obj : error LNK2001: unresolved external symbol
> >>> "public:
> >>> > static void ! __cdecl itk::LightObject::operator delete(void *)"
> >>> > (??3LightObject at itk@@SAXPAX at Z )
> >>> > itkImageViewer.obj : error LNK2001: unresolved external symbol
> >>> "public:
> >>> > static void * __cdecl itk::LightObject::operator new(unsigned
> >>
> >>int)"
> >>
> >>
> >>> > (??2LightObject at itk@@SAPAXI at Z )
> >>> > itkImageViewer.obj : error LNK2001: unresolved external symbol
> >>> "public:
> >>> > static class itk::SmartPointer __cdecl
> >>> > itk::ObjectFactoryBase::CreateInstance(char const *)"
> >>> > (?CreateInstance at ObjectFactoryBase@itk@@SA?AV?$SmartPointer
> >>> >
> >>> > @VLightObject at itk@@@2 at PBD@Z)
> >>> > itkImageViewer.obj : error LNK2001: unresolved external symbol
> >>> > "protected: class itk::DataObject * __thiscall
> >>> > itk::ProcessObject::GetOutput(unsigned int)"
> >>> > (?GetOutput at ProcessObject@itk@@IAEPAVDataObj! ect at 2@I at Z
> >>> > )
> >>> > itkImageViewer.obj : error LNK2001: unresolved external symbol
> >>> > "protected: virtual void __thiscall
> >>> > itk::ProcessObject::PropagateResetPipeline(void)"
> >>> > (?PropagateResetPipeline at ProcessObject@itk@@MAEXXZ
> >>> > )
> >>> > itkImageViewer.obj : error LNK2001: unresolved external symbol
> >>> > "protected: virtual void __thiscall
> >>> > itk::ProcessObject::RemoveOutput(class itk::DataObject *)"
> >>! > > (?RemoveOutput at ProcessObject@itk@@MAEXPAVDataObject at 2@@Z
> >>> > )
> >>> > itkImageViewer.obj : error LNK2001: unresolved external symbol
> >>> > "protected: virtual void __thiscall
> >>> itk::ProcessObject::AddOutput(class
> >>> > itk::DataObject *)"
> >>> > (?AddOutput at ProcessObject@itk@@MAEXPAVDataObject at 2@@Z
> >>> > )
> >>> > itkImageViewer.obj : error LNK2001: unresolved external symbol
> >>> > "protected: virtual void __thiscall
> >>> > itk::ProcessObject::SetNthOutput(unsigned int,class
> >>> itk::DataObject *)"
> >>> > (?SetNthOutput at ProcessObject@itk@@MAEXIPAVDataObject at 2@@Z
> >>> > )
> >>> > itkImageViewer.obj : error LNK2001: unresolved external symbol
> >>> > "protected: virtual void __thiscall
> >>> > itk::ProcessObject::GenerateOutputRequestedRegion(class
> >! ;>> itk::DataObject
> >>> > *)"
> >>> >
> >>>
> >>>(?GenerateOutputRequestedRegion at ProcessObject@itk@@MAEXPAVDataObject at 2
> >>>@@Z
> >>>
> >>> > )
> >>> > itkImageViewer.obj : error LNK2001: unresolved external symbol
> >>> > "protected: virtual void __thiscall
> >>> > itk::ProcessObject::GenerateInputRequestedRegion(void)"
> >>> > (?GenerateInputRequestedRegion at ProcessObject@itk@@MAEXXZ
> >>> > )
> >>> > itkImageViewer.obj : error LNK2001: unresolved external symbol
> >>> > "protected: virtual void __thiscall
> >>> > itk::ProcessObject::RemoveInput(class itk::DataObject *)"
> >>> > (?RemoveInput at ProcessObject@itk@@MAEXPAVDataObject at 2@@Z
> >>> > )
> >>> > Can anybody help me. I dont know whether I am doing anything
> >>> wrong if
> >>> >! ; anybody can let me know how to go by using insight
> application
> >>> it would
> >>> > really help.If i have to use fltk should I download in the same
> >>> folder
> >>> > as insight toolkit and should I use cmake for that. Please let
> >>> me know.
> >>> > Thank you
> >>> >
> >>> >
> >>>
> >
> ------------------------------------------------------------------------
> >
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> >>
> >>
> >>
> >>
> >>
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> >
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> >
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> >
> >
> >
>
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>
>
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