[Insight-users] 3Dvolume..

[Jolinda Smith]

Yasser,

What format are your original files in? For most formats you should be
able to write a metaimage header using the MetaImageImporter program in
Insight-Applications. If they are DICOM files, you can also you my
program to write a metaimage header
(http://lcni.uoregon.edu/~jolinda/MRIConvert). Then you can read the
entire volume in and operate on that, instead of working slice-by-slice.

You should read the ITK Software Guide
(www.itk.org/itkSoftwareGuide.pdf) for information about how to use ITK.

Jolinda Smith
Lewis Center for NeuroImaging
University of Oregon
jolinda@uoregon.edu

----- Original Message -----
From: "yasser salman" <yass@uscx.net>
To: "Luis Ibanez" <luis.ibanez@kitware.com>
Cc: <insight-users@public.kitware.com>
Sent: Tuesday, May 13, 2003 1:34 PM
Subject: [Insight-users] 3Dvolume..


>
> Hi Luis
> i wanna to extract the brain volume from a series of MRI slice..,
> 1- i converted the slices to raw format.
> 2- i'm using thershold techinque to remove the back ground.(slice by
slice it's takes a long time!!).
> how can i segment the brain from the head using ITK..or use semi
automatic thecnique (registeration with atals) in ITK did ITK support
segmentation of series and reconstruct these slices using VTK?..plz help
me to decide which way i will go to..,
> thanx..
> yasser..
>
>
>
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