[Insight-users] Update: Running error with SegmentationEditor
Xu, Yanjun
yanjunxu@umich.edu
Wed, 9 Oct 2002 12:16:03 -0400
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Hi,
It seems that it's because of the file opening format difference between
Unix and Windows. On windows, the default opening format is text format. In
my case, in.gcount is 1558, listsz*sizeof(merge_t) is 234192, while the tree
file size on the disk is 235146. It seems that both the writing and reading
function of tree file should be specified as binary format explicitly. Am I
right? Thanks.
Sincerely,
Yanjun
-----Original Message-----
From: Xu, Yanjun
Sent: Wednesday, October 09, 2002 8:36 AM
To: 'insight-users@public.kitware.com'
Subject: Running error with SegmentationEditor
Hi, Dear All,
I'm trying to run SegmentationEditor. I succeeded in running data and
preprocess module. While I was running the segmenter module, the program
always stopped abnormally in this function.
void vtkWSLookupTableManager::LoadTreeFile(const char* fn)
{
.
.
.
// now read the data
in.read((char *)(this->MergeList + 1), listsz * sizeof(merge_t));
if (in.gcount() != listsz *sizeof(merge_t))
{
vtkErrorMacro(<<"Error reading " << fn << ". File size does not match
header size.");
exit(-1);
>>>> stop here
}
in.close();
.
.
.
}
Could anybody help to solve this problem? Thanks a lot.
Sincerely,
Yanjun
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<p class=3DMsoNormal><font size=3D2 color=3Dnavy face=3DArial><span =
style=3D'font-size:
10.0pt;font-family:Arial;color:navy'>Hi, <o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 color=3Dnavy face=3DArial><span =
style=3D'font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>=
<p class=3DMsoNormal><font size=3D2 color=3Dnavy face=3DArial><span =
style=3D'font-size:
10.0pt;font-family:Arial;color:navy'>It seems that it's because of the =
file
opening format difference between <span class=3DGramE>Unix</span> and =
Windows. On
windows, the default opening format is text format. In my case, <span
class=3DSpellE>in.gcount</span> is 1558, <span =
class=3DSpellE>listsz</span>*<span
class=3DSpellE><span class=3DGramE>sizeof</span></span><span =
class=3DGramE>(</span><span
class=3DSpellE>merge_t</span>) is 234192, while the tree file size on =
the disk is
235146. It seems that both the writing and reading function of tree =
file should
be specified as binary format explicitly. Am I right? =
Thanks.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 color=3Dnavy face=3DArial><span =
style=3D'font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>=
<p class=3DMsoNormal><font size=3D2 color=3Dnavy face=3DArial><span =
style=3D'font-size:
10.0pt;font-family:Arial;color:navy'>Sincerely,<o:p></o:p></span></font>=
</p>
<p class=3DMsoNormal><span class=3DSpellE><font size=3D2 color=3Dnavy =
face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial;color:navy'>Yanjun</span></f=
ont></span><font
size=3D2 color=3Dnavy face=3DArial><span =
style=3D'font-size:10.0pt;font-family:Arial;
color:navy'><o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 color=3Dnavy face=3DArial><span =
style=3D'font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>=
<p class=3DMsoNormal><font size=3D2 face=3DTahoma><span =
style=3D'font-size:10.0pt;
font-family:Tahoma'>-----Original Message-----<br>
<b><span style=3D'font-weight:bold'>From:</span></b> Xu, Yanjun <br>
<b><span style=3D'font-weight:bold'>Sent:</span></b> Wednesday, October =
09, 2002
8:36 AM<br>
<b><span style=3D'font-weight:bold'>To:</span></b>
'insight-users@public.kitware.com'<br>
<b><span style=3D'font-weight:bold'>Subject:</span></b> Running error =
with
SegmentationEditor</span></font></p>
<p class=3DMsoNormal><font size=3D3 face=3D"Times New Roman"><span =
style=3D'font-size:
12.0pt'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Hi, Dear All,<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>I'm trying to run SegmentationEditor. I succeeded in
running data and preprocess module. While I was running the segmenter =
module,
the program always stopped abnormally in this function. =
<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>void vtkWSLookupTableManager::LoadTreeFile(const =
char* fn)<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>{<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><span style=3D'mso-spacerun:yes'>=A0 </span>// now =
read the data<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><span style=3D'mso-spacerun:yes'>=A0 =
</span>in.read((char
*)(this->MergeList + 1), listsz * =
sizeof(merge_t));<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><span style=3D'mso-spacerun:yes'>=A0 </span>if =
(in.gcount() !=3D
listsz *sizeof(merge_t))<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><span style=3D'mso-spacerun:yes'>=A0=A0=A0 =
</span>{<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><span style=3D'mso-spacerun:yes'>=A0=A0=A0=A0=A0
</span>vtkErrorMacro(<<"Error reading " << fn =
<<
". File size does not match header =
size.");<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><span style=3D'mso-spacerun:yes'>=A0=A0=A0=A0=A0 =
</span>exit(-1);<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 color=3Dred face=3DArial><span =
style=3D'font-size:
10.0pt;font-family:Arial;color:red'>>>>> stop =
here<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><span style=3D'mso-spacerun:yes'>=A0=A0=A0 =
</span>}<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><span style=3D'mso-spacerun:yes'>=A0 =
</span>in.close();<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>}<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Could anybody help to solve this problem? Thanks a =
lot.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Sincerely,<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Yanjun<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
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