[Insight-users] Problems while trying to compile the examples.

[Linglan Edwards]

Thanks Luis,

I did run ccmake to the Insight directory first. But I noticed that in some 
directories, (for example, in Examples/GaussianFilter, 
Examples/ImageRegistration), no Makefile was generated. Does that mean it 
couldn't find fltk or was it caused by something else? I have an older version 
of fltk installed (fltk-1.0.11, the only version I was able to compile), would 
that make any difference?

Thanks,

Linglan
>
>Hi Linglan,
>
>Some examples have dependencies that
>condition if they are built or not.
>
>For example, some of them require FLTK
>to be installed, some others require VTK.
>
>By enabling just Auxiliary and Examples it is to
>expect that not all the examples will be compiled.
>
>
>About the second group or errors that you posted:
>
>It is not a good idea to call ccmake in subdirectories.
>(e.g. in Insight/Examples) since CMake will navigate
>downstream in the directory tree but not into the
>parent directory.
>
>Please invoke "ccmake" in the top build directory
>and give the source directory as parameter.
>
>For example, I usually build Insight in:
>
>	~/lib/Insight
>
>so, I cd to ~/lib/Insight and invoke
>
>       ccmake ~/src/Insight
>
>given that ~/src/Insight is where the sources are.
>
>Then, I can call "make" at any level of the
>directory tree.
>
>
>The invokation of ccmake in subdirectories will
>result in inconsistent Makefiles since most of
>the project-wide settings will not be available
>at the subdirectory level.
>
>
>Please let us know if that helps,
>
>
>    Thanks
>
>     Luis
>
>
>
>===================================================
>
>Linglan Edwards wrote:
>
> > Hi,
> >
> > I set the BUILD_AUXILIARY and BUILD_EXAMPLES on, and generated the 
>make file. I
> > did a make. at various places including a lot of the examples, I got the
> > following kind of messages:
> >
> > ....
> > c++ -g -O2 -ftemplate-depth-50
> > -I/Development/ITK/Insight/Examples/MRIBiasCorrection 
>-I/Development/ITK/Insight
> > -I/Development/ITK/Insight/Code/Numerics 
>-I/Development/ITK/Insight/Code/Common
> > -I/Development/ITK/Insight/Code/IO 
>-I/Development/ITK/Insight/Code/Numerics/vxl
> > -I/Development/ITK/Insight/Code/Numerics/vxl
> > -I/Development/ITK/Insight/Code/Numerics/vxl/vcl
> > -I/Development/ITK/Insight/Code/Numerics/vxl/vcl
> > -I/Development/ITK/Insight/Utilities/png
> > -I/Development/ITK/Insight/Utilities/zlib
> > -I/Development/ITK/Insight/Code/BasicFilters
> > -I/Development/ITK/Insight/Code/Algorithms
> > -I/Development/ITK/Insight/Code/Numerics/Statistics
> > -I/Development/ITK/Insight/Auxiliary/MetaImage
> > -I/Development/ITK/Insight/Examples/MRIBiasCorrection   -D_PTHREADS -c
> > /Development/ITK/Insight/Examples/MRIBiasCorrection/ImageCorrector -o
> > ImageCorrector.o
> > c++: 
>/Development/ITK/Insight/Examples/MRIBiasCorrection/ImageCorrector: linker
> > input file unused since linking not done
> >
> > -------
> >
> > I found that a lot of the examples were not compiled. Then I went 
>into the
> > ./Examples directory, did a ccmake, and then 'make', and got the 
>following error
> > messages:
> > -------
> > c++  -g -O2 itkAntiAliasBinaryImageFilterExample.o /Code/Common
> > /Code/BasicFilters /Code/Algorithms /Code/Common /Code/IO
> > /Examples/StreamedWatershedSegmentation/ParameterFileParser
> > 
>-L/Development/ITK/Insight/Examples/StreamedWatershedSegmentation/ParameterFile
P
> > arser -lVXLNumerics -lITKCommon -lITKBasicFilters -lCio -lm -lparam
> > -lITKBasicFilters -lITKCommon -lVXLNumerics -lITKIO -lVXLNumerics 
>-lITKCommon
> > -lITKBasicFilters -lCio -lm -lparam -lITKBasicFilters -lITKCommon 
>-lVXLNumerics
> > -lITKIO
> > 
>-Wl,-R,/Development/ITK/Insight/Examples/StreamedWatershedSegmentation/Paramete
r
> > FileParser  -o itkAntiAliasBinaryImageFilterExample
> > c++: /Code/Common: No such file or directory
> > c++: /Code/BasicFilters: No such file or directory
> > c++: /Code/Algorithms: No such file or directory
> > c++: /Code/Common: No such file or directory
> > c++: /Code/IO: No such file or directory
> > c++: /Examples/StreamedWatershedSegmentation/ParameterFileParser: No 
>such file
> > or directory
> > *** Error code 1
> > The following command caused the error:
> > c++  -g -O2 itkAntiAliasBinaryImageFilterExample.o /Code/Common
> > /Code/BasicFilters /Code/Algorithms /Code/Common /Code/IO
> > /Examples/StreamedWatershedSegmentation/ParameterFileParser
> > 
>-L/Development/ITK/Insight/Examples/StreamedWatershedSegmentation/ParameterFile
P
> > arser -lVXLNumerics -lITKCommon -lITKBasicFilters -lCio -lm -lparam
> > -lITKBasicFilters -lITKCommon -lVXLNumerics -lITKIO -lVXLNumerics 
>-lITKCommon
> > -lITKBasicFilters -lCio -lm -lparam -lITKBasicFilters -lITKCommon 
>-lVXLNumerics
> > -lITKIO
> > 
>-Wl,-R,/Development/ITK/Insight/Examples/StreamedWatershedSegmentation/Paramete
r
> > FileParser  -o itkAntiAliasBinaryImageFilterExample
> > make: Fatal error: Command failed for target
> > `itkAntiAliasBinaryImageFilterExample'
> > Current working directory
> > /Development/ITK/Insight/Examples/AntiAliasBinaryImageFilter
> > *** Error code 1
> > The following command caused the error:
> > make -  all
> > make: Fatal error: Command failed for target `default_target'
> > Current working directory
> > /Development/ITK/Insight/Examples/AntiAliasBinaryImageFilter
> > *** Error code 1
> > The following command caused the error:
> > cd /Development/ITK/Insight/Examples/AntiAliasBinaryImageFilter; make -
> > default_target
> > make: Fatal error: Command failed for target
> > `default_target_AntiAliasBinaryImageFilter'
> > Current working directory /Development/ITK/Insight/Examples
> > *** Error code 1
> > The following command caused the error:
> > make -  all
> > make: Fatal error: Command failed for target `default_target'
> > -------
> >
> > Did I miss something?
> >
> > Thanks,
> >
> > Linglan
> > ============================
> > Linglan Edwards, Ph.D.
> > Senior Software Engineer
> > National Library of Medicine
> > Phone: (301) 435-3147
> > Email: linglan@nlm.nih.gov
> >
> > _______________________________________________
> > Insight-users mailing list
> > Insight-users@public.kitware.com
> > http://public.kitware.com/mailman/listinfo/insight-users
> >
> >
>
>
>
>
>
>

============================
Linglan Edwards, Ph.D.
Senior Software Engineer
National Library of Medicine
Phone: (301) 435-3147
Email: linglan@nlm.nih.gov