From matt.mccormick at kitware.com Wed Mar 14 16:14:08 2018 From: matt.mccormick at kitware.com (Matt McCormick) Date: Wed, 14 Mar 2018 16:14:08 -0400 Subject: [ITK-dev] Hackathon Following WBIR Message-ID: Leiden, The Netherlands June 28 & 29, 2018 Website: wbir2018.nl New: Call for 1-page abstracts: deadline April 1, 2018 New: Continuous Registration Challenge ? Participate! New: Post-WBIR Hackathon Dear colleagues, We have some exciting updates on the 8th International Workshop on Biomedical Image Registration, WBIR2018, held in Leiden, the Netherlands. For more info, please visit our website https://wbir2018.nl. We have a draft program online (confirmed keynote speech by Prof.dr. Max Welling, authority on machine learning!), and you may now register to attend the conference! CALL FOR 1-PAGE ABSTRACTS Missed the full paper submission deadline, but still want to participate? Submit a 1-page abstract by April 1! Abstracts will undergo a (mild) single-blind review and will be presented as posters (including a 2-minute plenary pitch) at the conference, but will not appear in the proceedings. We are excited to hear about your latest technical breakthroughs, clinical application studies, and also welcome abstracts of recently published or submitted journal papers. CONTINUOUS REGISTRATION CHALLENGE WBIR2018 will include a special session on the Continuous Registration Challenge (CRC). CRC is a new collaborative software platform for medical image registration. Please check it out at https://continuousregistration.grand-challenge.org, attend one of the weekly webinars, and participate! Post-WBIR Hackathon In collaboration with the Insight Toolkit (ITK) community and Kitware, we will host a hackathon on the day after the main conference (June 30). Participation is free of charge. IMPORTANT DATES ? Camera ready: March 23, 2018 ? 1-page abstract submission: April 1, 2018 ? Notification for 1-page abstracts: April 10, 2018 ? Early-bird registration deadline May 1, 2018 ? Conference: June 28/29, 2018 ? Post-WBIR Hackathon June 30, 2018 SCOPE Submissions are invited in all areas of biomedical image registration. Topics of interest include, but are not limited to: ? Novel registration methodology: 2D/3D/4D, spatiotemporal/dynamic, slice-to-volume, projective, single/multi-modal, intra/inter-subject, shape registration, model-based, patch-based, multi-channel, tracking, real-time, similarity measures, machine learning / deep learning techniques ? Mathematical aspects of image registration: continuous/discrete optimization methods, diffeomorphisms, LDDMM, stationary velocity, inverse consistency, multi-scale ? Biomedical applications of registration: computer-assisted interventions, image-guided therapy, treatment planning/delivery, diagnosis/prognosis, atlas-based segmentation, label fusion, histopathology correlation, motion-compensated reconstruction, serial studies, morphometry, biomechanics, image retrieval/restoration/fusion, imaging biomarkers for precision medicine, radiomics & radiogenomics ? Early proof of concept, with potential use in biomedical applications ? Validation of registration: quantitative and qualitative methods, benchmarking, comparison studies, phantom studies, correlation to outcome The conference papers will be published in the Lecture Notes in Computer Science (LNCS). ORGANIZING COMMITTEE Stefan Klein - Erasmus MC, The Netherlands Marius Staring - Leiden University Medical Center, The Netherlands Stanley Durrleman - INRIA/ICM ARAMIS Lab, France Stefan Sommer - University of Copenhagen, Denmark From taylor at braun-jones.org Tue Mar 20 14:10:14 2018 From: taylor at braun-jones.org (Taylor Braun-Jones) Date: Tue, 20 Mar 2018 14:10:14 -0400 Subject: [ITK-dev] ITK bug reporting broken? Message-ID: I'm looking at the instructions on the wiki[1] which say to go to here to obtain an account: https://issues.itk.org/jira/secure/Signup!default.jspa But the link is broken. If I try to go to the issues.itk.org address as listed on the wiki and in the [Resources > Bug Tracker] dropdown menu on itk.org, I get redirected to: https://insightsoftwareconsortium.atlassian.net/secure/Dashboard.jspa But if I click the login button on that page I get the error message: Did you use the wrong account? > Your email address taylor at braun-jones.org doesn't have access to > insightsoftwareconsortium.atlassian.net (I have an Atlassian account and am logged in) Am I doing something wrong or is ITK bug reporting broken right now? Thanks, Taylor [1] https://itk.org/Wiki/ITK/Procedure_for_Contributing_Bug_Fixes -------------- next part -------------- An HTML attachment was scrubbed... URL: From hans-johnson at uiowa.edu Tue Mar 20 14:48:54 2018 From: hans-johnson at uiowa.edu (Johnson, Hans J) Date: Tue, 20 Mar 2018 18:48:54 +0000 Subject: [ITK-dev] ITK bug reporting broken? In-Reply-To: References: Message-ID: <4C01142D-98C5-4E56-AD75-7C2524FC8BAC@uiowa.edu> An invitation has been sent to you. Hans From: Insight-developers on behalf of Taylor Braun-Jones Date: Tuesday, March 20, 2018 at 1:42 PM To: ITK Developers Subject: [ITK-dev] ITK bug reporting broken? I'm looking at the instructions on the wiki[1] which say to go to here to obtain an account: https://issues.itk.org/jira/secure/Signup!default.jspa But the link is broken. If I try to go to the issues.itk.org address as listed on the wiki and in the [Resources > Bug Tracker] dropdown menu on itk.org, I get redirected to: https://insightsoftwareconsortium.atlassian.net/secure/Dashboard.jspa But if I click the login button on that page I get the error message: Did you use the wrong account? Your email address taylor at braun-jones.org doesn't have access to insightsoftwareconsortium.atlassian.net (I have an Atlassian account and am logged in) Am I doing something wrong or is ITK bug reporting broken right now? Thanks, Taylor [1] https://itk.org/Wiki/ITK/Procedure_for_Contributing_Bug_Fixes -------------- next part -------------- An HTML attachment was scrubbed... URL: From taylor at braun-jones.org Tue Mar 20 14:59:04 2018 From: taylor at braun-jones.org (Taylor Braun-Jones) Date: Tue, 20 Mar 2018 14:59:04 -0400 Subject: [ITK-dev] ITK bug reporting broken? In-Reply-To: <4C01142D-98C5-4E56-AD75-7C2524FC8BAC@uiowa.edu> References: <4C01142D-98C5-4E56-AD75-7C2524FC8BAC@uiowa.edu> Message-ID: Thanks, Hans. Are the wiki instructions going to be updated too so others aren't faced with the same confusing situation? On Tue, Mar 20, 2018 at 2:48 PM, Johnson, Hans J wrote: > An invitation has been sent to you. > > > > Hans > > > > > > *From: *Insight-developers on behalf > of Taylor Braun-Jones > *Date: *Tuesday, March 20, 2018 at 1:42 PM > *To: *ITK Developers > *Subject: *[ITK-dev] ITK bug reporting broken? > > > > I'm looking at the instructions on the wiki[1] which say to go to here to > obtain an account: > > > > https://issues.itk.org/jira/secure/Signup!default.jspa > > > > But the link is broken. If I try to go to the issues.itk.org address as > listed on the wiki and in the [Resources > Bug Tracker] dropdown menu on > itk.org, I get redirected to: > > > > https://insightsoftwareconsortium.atlassian.net/secure/Dashboard.jspa > > > > But if I click the login button on that page I get the error message: > > > > Did you use the wrong account? > Your email address taylor at braun-jones.org doesn't have access to > insightsoftwareconsortium.atlassian.net > > > > (I have an Atlassian account and am logged in) > > > > Am I doing something wrong or is ITK bug reporting broken right now? > > > > Thanks, > > Taylor > > > > [1] https://itk.org/Wiki/ITK/Procedure_for_Contributing_Bug_Fixes > -------------- next part -------------- An HTML attachment was scrubbed... URL: From matt.mccormick at kitware.com Tue Mar 20 15:12:43 2018 From: matt.mccormick at kitware.com (Matt McCormick) Date: Tue, 20 Mar 2018 15:12:43 -0400 Subject: [ITK-dev] ITK bug reporting broken? In-Reply-To: References: <4C01142D-98C5-4E56-AD75-7C2524FC8BAC@uiowa.edu> Message-ID: I added the {{Historical}} template to the page and links to the Software Process section of the ITK Software Guide and the CONTRIBUTING.md file in the ITK repository. Thanks, Matt On Tue, Mar 20, 2018 at 2:59 PM, Taylor Braun-Jones wrote: > Thanks, Hans. Are the wiki instructions going to be updated too so others > aren't faced with the same confusing situation? > > On Tue, Mar 20, 2018 at 2:48 PM, Johnson, Hans J > wrote: >> >> An invitation has been sent to you. >> >> >> >> Hans >> >> >> >> >> >> From: Insight-developers on behalf of >> Taylor Braun-Jones >> Date: Tuesday, March 20, 2018 at 1:42 PM >> To: ITK Developers >> Subject: [ITK-dev] ITK bug reporting broken? >> >> >> >> I'm looking at the instructions on the wiki[1] which say to go to here to >> obtain an account: >> >> >> >> https://issues.itk.org/jira/secure/Signup!default.jspa >> >> >> >> But the link is broken. If I try to go to the issues.itk.org address as >> listed on the wiki and in the [Resources > Bug Tracker] dropdown menu on >> itk.org, I get redirected to: >> >> >> >> https://insightsoftwareconsortium.atlassian.net/secure/Dashboard.jspa >> >> >> >> But if I click the login button on that page I get the error message: >> >> >> >> Did you use the wrong account? >> Your email address taylor at braun-jones.org doesn't have access to >> insightsoftwareconsortium.atlassian.net >> >> >> >> (I have an Atlassian account and am logged in) >> >> >> >> Am I doing something wrong or is ITK bug reporting broken right now? >> >> >> >> Thanks, >> >> Taylor >> >> >> >> [1] https://itk.org/Wiki/ITK/Procedure_for_Contributing_Bug_Fixes > > > > The ITK community is transitioning from this mailing list to > discourse.itk.org. Please join us there! > ______________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Kitware offers ITK Training Courses, for more information visit: > http://kitware.com/products/protraining.php > > Please keep messages on-topic and check the ITK FAQ at: > http://www.itk.org/Wiki/ITK_FAQ > > Follow this link to subscribe/unsubscribe: > https://itk.org/mailman/listinfo/insight-developers > From celina_imielinska at yahoo.com Tue Mar 27 13:42:33 2018 From: celina_imielinska at yahoo.com (Celina Imielinska) Date: Tue, 27 Mar 2018 17:42:33 +0000 (UTC) Subject: [ITK-dev] ITK Software Guide References: <1920304591.517234.1522172553991.ref@mail.yahoo.com> Message-ID: <1920304591.517234.1522172553991@mail.yahoo.com> Dear All (I have emailed separately Bill Schroeder at Kitware) I am very happy that ITK Toolkit has been thriving over so many years. Kitware has done amazing job to maintain it and to expand it. Still, I am trying to contact the main co-authors of the currect ITK Software Guide. I am writing about the usage of "Voronoi Region" terminology in the recent editions of the ITK Software guide - that is very odd and not in agreement with how Voronoi Diagram, that is one of the fundamental geometric structures, is defined:https://www.cs.ucsb.edu/~suri/cs235/Voronoi.pdf Could you please email me -? I would like to suggest that if we want to use as "geometrical concepts associated with the ITK image" "Voronoi region" in a form what I consider a degenerative representation of? it - then maybe it would be wise to name it differently. Not to mention the usage of another oddity:? Delaunay Region - what is it? Voronoi Diagram and its dual, Delaunay Triangulation are classic geometric constructs that require that the points, in the Voronoi diagram, the Voronoi points, satisfy: "Non-degeneracy Condition: Assume no 4 cocircular points, and no 3 collinear." This is violated in the construct included in the Guide and referred to as Voronoi Region and Delaunay Region. I don't mind that the guide is not including any more my? original hybrid segmentation contribution that included Voronoi Diagram classification?https://core.ac.uk/download/pdf/27299860.pdfI woudl like to ask you to discuss what can be done with possibly correctingthe odd terminology, looking forward to hear from? Best Regards, Celina Imielinska Celina Imielinska, PhDPrincipalVesalius Technologies LLCPrinceton NJcelina_imielinska at yahoo.com609 240 4721 PS. old version?http://www.sci.utah.edu/publications/ibanez03/ItkSoftwareGuide.pdf? ? ? ?newest?https://itk.org/ItkSoftwareGuide.pdf -------------- next part -------------- An HTML attachment was scrubbed... URL: From matt.mccormick at kitware.com Tue Mar 27 13:48:28 2018 From: matt.mccormick at kitware.com (Matt McCormick) Date: Tue, 27 Mar 2018 13:48:28 -0400 Subject: [ITK-dev] ITK Software Guide In-Reply-To: <1920304591.517234.1522172553991@mail.yahoo.com> References: <1920304591.517234.1522172553991.ref@mail.yahoo.com> <1920304591.517234.1522172553991@mail.yahoo.com> Message-ID: Hi Celina, Improvements to the Software Guide are welcome. Please see the README here on how to contribute: https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide Thanks, Matt On Tue, Mar 27, 2018 at 1:42 PM, Celina Imielinska via Insight-developers < insight-developers at itk.org> wrote: > > Dear All > > (I have emailed separately Bill Schroeder at Kitware) > > I am very happy that ITK Toolkit has been thriving over so many years. > Kitware has done amazing job to maintain it and to expand it. > > Still, I am trying to contact the main co-authors of the currect ITK > Software Guide. > > I am writing about the usage of "Voronoi Region" terminology in the recent > editions of the ITK Software guide - that is very odd and not in agreement > with how Voronoi Diagram, that is one of the fundamental geometric > structures, is defined: > https://www.cs.ucsb.edu/~suri/cs235/Voronoi.pdf > > > Could you please email me - I would like to suggest that if we want to > use as "geometrical concepts associated with the ITK image" "Voronoi > region" in a form what I consider a degenerative representation of it - > then maybe it would be wise to name it differently. Not to mention the > usage of another oddity: Delaunay Region - what is it? Voronoi Diagram and > its dual, Delaunay Triangulation are classic geometric constructs that > require that the points, in the Voronoi diagram, the Voronoi points, > satisfy: > > "Non-degeneracy Condition: Assume no 4 cocircular points, and no 3 > collinear." > > This is violated in the construct included in the Guide and referred to as > Voronoi Region and Delaunay Region. > > I don't mind that the guide is not including any more my original hybrid > segmentation contribution that included Voronoi Diagram classification > https://core.ac.uk/download/pdf/27299860.pdf > I woudl like to ask you to discuss what can be done with possibly > correctingthe odd terminology, > > looking forward to hear from > > Best Regards, > > Celina Imielinska > > Celina Imielinska, PhD > Principal > Vesalius Technologies LLC > Princeton NJ > celina_imielinska at yahoo.com > 609 240 4721 <(609)%20240-4721> > > PS. old version http://www.sci.utah.edu/publications/ibanez03/ > ItkSoftwareGuide.pdf > newest https://itk.org/ItkSoftwareGuide.pdf > > The ITK community is transitioning from this mailing list to > discourse.itk.org. Please join us there! > ______________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Kitware offers ITK Training Courses, for more information visit: > http://kitware.com/products/protraining.php > > Please keep messages on-topic and check the ITK FAQ at: > http://www.itk.org/Wiki/ITK_FAQ > > Follow this link to subscribe/unsubscribe: > https://itk.org/mailman/listinfo/insight-developers > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From celina_imielinska at yahoo.com Tue Mar 27 13:59:41 2018 From: celina_imielinska at yahoo.com (Celina Imielinska) Date: Tue, 27 Mar 2018 17:59:41 +0000 (UTC) Subject: [ITK-dev] ITK Software Guide In-Reply-To: References: <1920304591.517234.1522172553991.ref@mail.yahoo.com> <1920304591.517234.1522172553991@mail.yahoo.com> Message-ID: <126188563.522813.1522173581831@mail.yahoo.com> Hello Matt, thank you for your email... I agree it - but this one of the fundamendat geometric constructs used in the Guide - that is just ill-named... How can we name it differently....? definitely, not as Voronoi region, nor Delaunay region (completely wrong) -let us discuss, Best, Celina From: Matt McCormick To: Celina Imielinska Cc: Stephen Aylward ; Bradley Lowekamp ; Insight Developers ; Luis Ibanez Sent: Tuesday, March 27, 2018 1:48 PM Subject: Re: [ITK-dev] ITK Software Guide Hi Celina, Improvements to the Software Guide are welcome. Please see the README here on how to contribute: ??https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide Thanks,Matt On Tue, Mar 27, 2018 at 1:42 PM, Celina Imielinska via Insight-developers wrote: Dear All (I have emailed separately Bill Schroeder at Kitware) I am very happy that ITK Toolkit has been thriving over so many years. Kitware has done amazing job to maintain it and to expand it. Still, I am trying to contact the main co-authors of the currect ITK Software Guide. I am writing about the usage of "Voronoi Region" terminology in the recent editions of the ITK Software guide - that is very odd and not in agreement with how Voronoi Diagram, that is one of the fundamental geometric structures, is defined:https://www.cs.ucsb.edu/~suri/ cs235/Voronoi.pdf Could you please email me -? I would like to suggest that if we want to use as "geometrical concepts associated with the ITK image" "Voronoi region" in a form what I consider a degenerative representation of? it - then maybe it would be wise to name it differently. Not to mention the usage of another oddity:? Delaunay Region - what is it? Voronoi Diagram and its dual, Delaunay Triangulation are classic geometric constructs that require that the points, in the Voronoi diagram, the Voronoi points, satisfy: "Non-degeneracy Condition: Assume no 4 cocircular points, and no 3 collinear." This is violated in the construct included in the Guide and referred to as Voronoi Region and Delaunay Region. I don't mind that the guide is not including any more my? original hybrid segmentation contribution that included Voronoi Diagram classification?https://core.ac.uk/download/ pdf/27299860.pdfI woudl like to ask you to discuss what can be done with possibly correctingthe odd terminology, looking forward to hear from? Best Regards, Celina Imielinska Celina Imielinska, PhDPrincipalVesalius Technologies LLCPrinceton NJcelina_imielinska at yahoo.com609 240 4721 PS. old version?http://www.sci.utah. edu/publications/ibanez03/ ItkSoftwareGuide.pdf? ? ? ?newest?https://itk.org/ ItkSoftwareGuide.pdf The ITK community is transitioning from this mailing list to discourse.itk.org. Please join us there! ______________________________ ________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/ opensource/opensource.html Kitware offers ITK Training Courses, for more information visit: http://kitware.com/products/ protraining.php Please keep messages on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_ FAQ Follow this link to subscribe/unsubscribe: https://itk.org/mailman/ listinfo/insight-developers -------------- next part -------------- An HTML attachment was scrubbed... URL: From matt.mccormick at kitware.com Tue Mar 27 14:09:33 2018 From: matt.mccormick at kitware.com (Matt McCormick) Date: Tue, 27 Mar 2018 14:09:33 -0400 Subject: [ITK-dev] ITK Software Guide In-Reply-To: <126188563.522813.1522173581831@mail.yahoo.com> References: <1920304591.517234.1522172553991.ref@mail.yahoo.com> <1920304591.517234.1522172553991@mail.yahoo.com> <126188563.522813.1522173581831@mail.yahoo.com> Message-ID: Hi Celina, I only see "Voronoi region" mentioned once here: https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/blob/7eb1f6dda1e5bfe57938f53584113ee771b298a7/SoftwareGuide/Latex/DesignAndFunctionality/HybridSegmentationMethods.tex Perhaps we just replace "Voronoi region" with "region"? Other improvements to make the language more accurate / precise are welcome. Thanks, Matt On Tue, Mar 27, 2018 at 1:59 PM, Celina Imielinska < celina_imielinska at yahoo.com> wrote: > > Hello Matt, > > thank you for your email... > > I agree it - but this one of the fundamendat geometric constructs used in > the Guide - that is just ill-named... > > How can we name it differently.... definitely, not as Voronoi region, nor > Delaunay region (completely wrong) > > -let us discuss, > > Best, > > Celina > ------------------------------ > *From:* Matt McCormick > *To:* Celina Imielinska > *Cc:* Stephen Aylward ; Bradley Lowekamp < > blowekamp at mail.nih.gov>; Insight Developers ; > Luis Ibanez > *Sent:* Tuesday, March 27, 2018 1:48 PM > *Subject:* Re: [ITK-dev] ITK Software Guide > > Hi Celina, > > Improvements to the Software Guide are welcome. Please see the README here > on how to contribute: > > https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide > > Thanks, > Matt > > On Tue, Mar 27, 2018 at 1:42 PM, Celina Imielinska via Insight-developers > wrote: > > > Dear All > > (I have emailed separately Bill Schroeder at Kitware) > > I am very happy that ITK Toolkit has been thriving over so many years. > Kitware has done amazing job to maintain it and to expand it. > > Still, I am trying to contact the main co-authors of the currect ITK > Software Guide. > > I am writing about the usage of "Voronoi Region" terminology in the recent > editions of the ITK Software guide - that is very odd and not in agreement > with how Voronoi Diagram, that is one of the fundamental geometric > structures, is defined: > https://www.cs.ucsb.edu/~suri/ cs235/Voronoi.pdf > > > > Could you please email me - I would like to suggest that if we want to > use as "geometrical concepts associated with the ITK image" "Voronoi > region" in a form what I consider a degenerative representation of it - > then maybe it would be wise to name it differently. Not to mention the > usage of another oddity: Delaunay Region - what is it? Voronoi Diagram and > its dual, Delaunay Triangulation are classic geometric constructs that > require that the points, in the Voronoi diagram, the Voronoi points, > satisfy: > > "Non-degeneracy Condition: Assume no 4 cocircular points, and no 3 > collinear." > > This is violated in the construct included in the Guide and referred to as > Voronoi Region and Delaunay Region. > > I don't mind that the guide is not including any more my original hybrid > segmentation contribution that included Voronoi Diagram classification > https://core.ac.uk/download/ pdf/27299860.pdf > > I woudl like to ask you to discuss what can be done with possibly > correctingthe odd terminology, > > looking forward to hear from > > Best Regards, > > Celina Imielinska > > Celina Imielinska, PhD > Principal > Vesalius Technologies LLC > Princeton NJ > celina_imielinska at yahoo.com > 609 240 4721 > > PS. old version http://www.sci.utah. edu/publications/ibanez03/ > ItkSoftwareGuide.pdf > > newest https://itk.org/ ItkSoftwareGuide.pdf > > > The ITK community is transitioning from this mailing list to > discourse.itk.org. Please join us there! > ______________________________ ________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/ opensource/opensource.html > > > Kitware offers ITK Training Courses, for more information visit: > http://kitware.com/products/ protraining.php > > > Please keep messages on-topic and check the ITK FAQ at: > http://www.itk.org/Wiki/ITK_ FAQ > > Follow this link to subscribe/unsubscribe: > https://itk.org/mailman/ listinfo/insight-developers > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From matt.mccormick at kitware.com Tue Mar 27 14:45:34 2018 From: matt.mccormick at kitware.com (Matt McCormick) Date: Tue, 27 Mar 2018 14:45:34 -0400 Subject: [ITK-dev] ITK Software Guide In-Reply-To: <1655047778.574482.1522174955911@mail.yahoo.com> References: <1920304591.517234.1522172553991.ref@mail.yahoo.com> <1920304591.517234.1522172553991@mail.yahoo.com> <126188563.522813.1522173581831@mail.yahoo.com> <1655047778.574482.1522174955911@mail.yahoo.com> Message-ID: Ah, I see now, Celina. Thanks for sharing the screenshots. How about removing the mention of Voronoi region and Delaunay region from that location in the text and changing the annotation in the text to "Pixel Centered Region" and "Pixel-Corner Centered Region"? - M On Tue, Mar 27, 2018 at 2:22 PM, Celina Imielinska < celina_imielinska at yahoo.com> wrote: > in the attached document > > page 41 > in section > 4.1.4 Defining Origin and Spacing > > > ------------------------------ > *From:* Matt McCormick > *To:* Celina Imielinska > *Cc:* Stephen Aylward ; Bradley Lowekamp < > blowekamp at mail.nih.gov>; Insight Developers ; > Luis Ibanez > *Sent:* Tuesday, March 27, 2018 2:09 PM > > *Subject:* Re: [ITK-dev] ITK Software Guide > > Hi Celina, > > I only see "Voronoi region" mentioned once here: > > https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/blob/ > 7eb1f6dda1e5bfe57938f53584113ee771b298a7/SoftwareGuide/ > Latex/DesignAndFunctionality/HybridSegmentationMethods.tex > > Perhaps we just replace "Voronoi region" with "region"? > > > Other improvements to make the language more accurate / precise are > welcome. > > > Thanks, > Matt > > > > On Tue, Mar 27, 2018 at 1:59 PM, Celina Imielinska < > celina_imielinska at yahoo.com> wrote: > > > Hello Matt, > > thank you for your email... > > I agree it - but this one of the fundamendat geometric constructs used in > the Guide - that is just ill-named... > > How can we name it differently.... definitely, not as Voronoi region, nor > Delaunay region (completely wrong) > > -let us discuss, > > Best, > > Celina > ------------------------------ > *From:* Matt McCormick > *To:* Celina Imielinska > *Cc:* Stephen Aylward ; Bradley Lowekamp < > blowekamp at mail.nih.gov>; Insight Developers ; > Luis Ibanez > *Sent:* Tuesday, March 27, 2018 1:48 PM > *Subject:* Re: [ITK-dev] ITK Software Guide > > Hi Celina, > > Improvements to the Software Guide are welcome. Please see the README here > on how to contribute: > > https://github.com/ InsightSoftwareConsortium/ ITKSoftwareGuide > > > Thanks, > Matt > > On Tue, Mar 27, 2018 at 1:42 PM, Celina Imielinska via Insight-developers > wrote: > > > Dear All > > (I have emailed separately Bill Schroeder at Kitware) > > I am very happy that ITK Toolkit has been thriving over so many years. > Kitware has done amazing job to maintain it and to expand it. > > Still, I am trying to contact the main co-authors of the currect ITK > Software Guide. > > I am writing about the usage of "Voronoi Region" terminology in the recent > editions of the ITK Software guide - that is very odd and not in agreement > with how Voronoi Diagram, that is one of the fundamental geometric > structures, is defined: > https://www.cs.ucsb.edu/~suri/ cs235/Voronoi.pdf > > > > Could you please email me - I would like to suggest that if we want to > use as "geometrical concepts associated with the ITK image" "Voronoi > region" in a form what I consider a degenerative representation of it - > then maybe it would be wise to name it differently. Not to mention the > usage of another oddity: Delaunay Region - what is it? Voronoi Diagram and > its dual, Delaunay Triangulation are classic geometric constructs that > require that the points, in the Voronoi diagram, the Voronoi points, > satisfy: > > "Non-degeneracy Condition: Assume no 4 cocircular points, and no 3 > collinear." > > This is violated in the construct included in the Guide and referred to as > Voronoi Region and Delaunay Region. > > I don't mind that the guide is not including any more my original hybrid > segmentation contribution that included Voronoi Diagram classification > https://core.ac.uk/download/ pdf/27299860.pdf > > I woudl like to ask you to discuss what can be done with possibly > correctingthe odd terminology, > > looking forward to hear from > > Best Regards, > > Celina Imielinska > > Celina Imielinska, PhD > Principal > Vesalius Technologies LLC > Princeton NJ > celina_imielinska at yahoo.com > 609 240 4721 > > PS. old version http://www.sci.utah. edu/publications/ibanez03/ > ItkSoftwareGuide.pdf > > newest https://itk.org/ ItkSoftwareGuide.pdf > > > The ITK community is transitioning from this mailing list to > discourse.itk.org. Please join us there! > ______________________________ ________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/ opensource/opensource.html > > > Kitware offers ITK Training Courses, for more information visit: > http://kitware.com/products/ protraining.php > > > Please keep messages on-topic and check the ITK FAQ at: > http://www.itk.org/Wiki/ITK_ FAQ > > Follow this link to subscribe/unsubscribe: > https://itk.org/mailman/ listinfo/insight-developers > > > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From celina_imielinska at yahoo.com Tue Mar 27 16:19:34 2018 From: celina_imielinska at yahoo.com (Celina Imielinska) Date: Tue, 27 Mar 2018 20:19:34 +0000 (UTC) Subject: [ITK-dev] ITK Software Guide References: <798829727.610059.1522181974720.ref@mail.yahoo.com> Message-ID: <798829727.610059.1522181974720@mail.yahoo.com> That would be appropriate Thank you! -------------------------------------------- On Tue, 3/27/18, Matt McCormick wrote: Subject: Re: [ITK-dev] ITK Software Guide To: "Celina Imielinska" Cc: "Stephen Aylward" , "Bradley Lowekamp" , "Insight Developers" , "Luis Ibanez" Date: Tuesday, March 27, 2018, 2:45 PM Ah, I see now, Celina. Thanks for sharing the screenshots. How about removing the mention of Voronoi region and Delaunay region from that location in the text and changing the annotation in the text to "Pixel Centered Region" and "Pixel-Corner Centered Region"? ?- M On Tue, Mar 27, 2018 at 2:22 PM, Celina Imielinska wrote: in the attached document page 41in section4.1.4? Defining Origin and Spacing From: Matt McCormick To: Celina Imielinska Cc: Stephen Aylward ; Bradley Lowekamp ; Insight Developers ; Luis Ibanez Sent: Tuesday, March 27, 2018 2:09 PM Subject: Re: [ITK-dev] ITK Software Guide Hi Celina, I only see "Voronoi region" mentioned once here: ??https://github.com/ InsightSoftwareConsortium/ ITKSoftwareGuide/blob/ 7eb1f6dda1e5bfe57938f53584113e e771b298a7/SoftwareGuide/ Latex/DesignAndFunctionality/ HybridSegmentationMethods.tex Perhaps we just replace "Voronoi region" with "region"? Other improvements to make the language more accurate / precise are welcome. Thanks,Matt On Tue, Mar 27, 2018 at 1:59 PM, Celina Imielinska wrote: Hello Matt, thank you for your email... I agree it - but this one of the fundamendat geometric constructs used in the Guide - that is just ill-named... How can we name it differently....? definitely, not as Voronoi region, nor Delaunay region (completely wrong) -let us discuss, Best, Celina From: Matt McCormick To: Celina Imielinska Cc: Stephen Aylward ; Bradley Lowekamp ; Insight Developers ; Luis Ibanez Sent: Tuesday, March 27, 2018 1:48 PM Subject: Re: [ITK-dev] ITK Software Guide Hi Celina, Improvements to the Software Guide are welcome. Please see the README here on how to contribute: ??https://github.com/ InsightSoftwareConsortium/ ITKSoftwareGuide Thanks,Matt On Tue, Mar 27, 2018 at 1:42 PM, Celina Imielinska via Insight-developers wrote: Dear All (I have emailed separately Bill Schroeder at Kitware) I am very happy that ITK Toolkit has been thriving over so many years. Kitware has done amazing job to maintain it and to expand it. Still, I am trying to contact the main co-authors of the currect ITK Software Guide. I am writing about the usage of "Voronoi Region" terminology in the recent editions of the ITK Software guide - that is very odd and not in agreement with how Voronoi Diagram, that is one of the fundamental geometric structures, is defined:https://www.cs.ucsb.edu/~suri/ cs235/Voronoi.pdf Could you please email me -? I would like to suggest that if we want to use as "geometrical concepts associated with the ITK image" "Voronoi region" in a form what I consider a degenerative representation of? it - then maybe it would be wise to name it differently. Not to mention the usage of another oddity:? Delaunay Region - what is it? Voronoi Diagram and its dual, Delaunay Triangulation are classic geometric constructs that require that the points, in the Voronoi diagram, the Voronoi points, satisfy: "Non-degeneracy Condition: Assume no 4 cocircular points, and no 3 collinear." This is violated in the construct included in the Guide and referred to as Voronoi Region and Delaunay Region. I don't mind that the guide is not including any more my? original hybrid segmentation contribution that included Voronoi Diagram classification?https://core.ac.uk/download/ pdf/27299860.pdfI woudl like to ask you to discuss what can be done with possibly correctingthe odd terminology, looking forward to hear from? Best Regards, Celina Imielinska Celina Imielinska, PhDPrincipalVesalius Technologies LLCPrinceton NJcelina_imielinska at yahoo.com609 240 4721 PS. old version?http://www.sci.utah. edu/publications/ibanez03/ ItkSoftwareGuide.pdf? ? ? ?newest?https://itk.org/ ItkSoftwareGuide.pdf The ITK community is transitioning from this mailing list to discourse.itk.org. Please join us there! ______________________________ ________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/ opensource/opensource.html Kitware offers ITK Training Courses, for more information visit: http://kitware.com/products/ protraining.php Please keep messages on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_ FAQ Follow this link to subscribe/unsubscribe: https://itk.org/mailman/ listinfo/insight-developers From matt.mccormick at kitware.com Tue Mar 27 17:23:30 2018 From: matt.mccormick at kitware.com (Matt McCormick) Date: Tue, 27 Mar 2018 17:23:30 -0400 Subject: [ITK-dev] ITK Software Guide In-Reply-To: <798829727.610059.1522181974720@mail.yahoo.com> References: <798829727.610059.1522181974720.ref@mail.yahoo.com> <798829727.610059.1522181974720@mail.yahoo.com> Message-ID: Thank you for efforts to improve the work, Celina. The ITK Software Guide is a living document, and many students should continue to learn from the body of knowledge that Luis poured out many years ago. Here is a patch for the figure: https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/pull/65 and the text: http://review.source.kitware.com/#/c/23300/ Thanks, Matt On Tue, Mar 27, 2018 at 4:19 PM, Celina Imielinska < celina_imielinska at yahoo.com> wrote: > That would be appropriate > > Thank you! > -------------------------------------------- > On Tue, 3/27/18, Matt McCormick wrote: > > Subject: Re: [ITK-dev] ITK Software Guide > To: "Celina Imielinska" > Cc: "Stephen Aylward" , "Bradley Lowekamp" < > blowekamp at mail.nih.gov>, "Insight Developers" , > "Luis Ibanez" > Date: Tuesday, March 27, 2018, 2:45 PM > > Ah, I see > now, Celina. Thanks for sharing the screenshots. > How about removing the mention of > Voronoi region and Delaunay region from that location in the > text and changing the annotation in the text to "Pixel > Centered Region" and "Pixel-Corner Centered > Region"? > - > M > On Tue, Mar 27, 2018 at > 2:22 PM, Celina Imielinska > wrote: > in > the attached document > page > 41in > section4.1.4 > Defining Origin and Spacing > > > > From: Matt McCormick > > To: Celina Imielinska > > > Cc: Stephen Aylward > ; > Bradley Lowekamp ; > Insight Developers ; > Luis Ibanez > Sent: Tuesday, March > 27, 2018 2:09 PM > Subject: Re: [ITK-dev] > ITK Software Guide > > > Hi Celina, > I only > see "Voronoi region" mentioned once > here: > https://github.com/ > InsightSoftwareConsortium/ ITKSoftwareGuide/blob/ > 7eb1f6dda1e5bfe57938f53584113e e771b298a7/SoftwareGuide/ > Latex/DesignAndFunctionality/ > HybridSegmentationMethods.tex > Perhaps we just replace > "Voronoi region" with > "region"? > > Other > improvements to make the language more accurate / precise > are welcome. > > Thanks,Matt > > > On > Tue, Mar 27, 2018 at 1:59 PM, Celina Imielinska < > celina_imielinska at yahoo.com> > wrote: > > Hello Matt, > thank > you for your email... > I > agree it - but this one of the fundamendat geometric > constructs used in the Guide - that is just > ill-named... > How > can we name it differently.... definitely, not as Voronoi > region, nor Delaunay region (completely wrong) > -let > us discuss, > Best, > Celina > From: Matt > McCormick > To: Celina Imielinska > > > Cc: Stephen Aylward > ; > Bradley Lowekamp ; > Insight Developers ; > Luis Ibanez > Sent: Tuesday, March > 27, 2018 1:48 PM > Subject: Re: [ITK-dev] > ITK Software Guide > > > > Hi Celina, > Improvements to the Software Guide > are welcome. Please see the README here on how to > contribute: > https://github.com/ > InsightSoftwareConsortium/ > ITKSoftwareGuide > Thanks,Matt > On > Tue, Mar 27, 2018 at 1:42 PM, Celina Imielinska via > Insight-developers > wrote: > > Dear > All > (I > have emailed separately Bill Schroeder at Kitware) > I > am very happy that ITK Toolkit has been thriving over so > many years. Kitware has done amazing job to maintain it and > to expand it. > Still, > I am trying to contact the main co-authors of the currect > ITK Software Guide. > I > am writing about the usage of "Voronoi Region" > terminology in the recent editions of the ITK Software guide > - that is very odd and not in agreement with how Voronoi > Diagram, that is one of the fundamental geometric > structures, is defined:https://www.cs.ucsb.edu/~suri/ > cs235/Voronoi.pdf > > Could > you please email me - I would like to suggest that if we > want to use as "geometrical concepts associated with > the ITK image" "Voronoi region" in a form > what I consider a degenerative representation of it - then > maybe it would be wise to name it differently. Not to > mention the usage of another oddity: Delaunay Region - > what is it? Voronoi Diagram and its dual, Delaunay > Triangulation are classic geometric constructs that require > that the points, in the Voronoi diagram, the Voronoi points, > satisfy: > "Non-degeneracy > Condition: Assume no 4 cocircular points, and no 3 > collinear." > This > is violated in the construct included in the Guide and > referred to as Voronoi Region and Delaunay Region. > I > don't mind that the guide is not including any more my > original hybrid segmentation contribution that included > Voronoi Diagram classification https://core.ac.uk/download/ > pdf/27299860.pdfI > woudl like to ask you to discuss what can be done with > possibly correctingthe odd terminology, > looking > forward to hear from > Best > Regards, > Celina > Imielinska > Celina > Imielinska, PhDPrincipalVesalius > Technologies LLCPrinceton > NJcelina_imielinska at yahoo.com609 240 4721 > PS. > old version http://www.sci.utah. > edu/publications/ibanez03/ > ItkSoftwareGuide.pdf > newest https://itk.org/ > ItkSoftwareGuide.pdf > The ITK community is transitioning from this > mailing list to discourse.itk.org. > Please join us there! > > ______________________________ ________ > > Powered by www.kitware.com > > > > Visit other Kitware open-source projects at > > http://www.kitware.com/ > opensource/opensource.html > > > > Kitware offers ITK Training Courses, for more information > visit: > > http://kitware.com/products/ > protraining.php > > > > Please keep messages on-topic and check the ITK FAQ at: > > http://www.itk.org/Wiki/ITK_ > FAQ > > > > Follow this link to subscribe/unsubscribe: > > https://itk.org/mailman/ > listinfo/insight-developers > > > > > > > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From celina_imielinska at yahoo.com Wed Mar 28 09:35:28 2018 From: celina_imielinska at yahoo.com (Celina Imielinska) Date: Wed, 28 Mar 2018 13:35:28 +0000 (UTC) Subject: [ITK-dev] ITK Software Guide In-Reply-To: <1523366140.262107.1522243260582@mail.yahoo.com> References: <798829727.610059.1522181974720.ref@mail.yahoo.com> <798829727.610059.1522181974720@mail.yahoo.com> <1523366140.262107.1522243260582@mail.yahoo.com> Message-ID: <1098703884.244169.1522244128697@mail.yahoo.com> Matt, do you plan to correct the actual document? https://itk.org/ItkSoftwareGuide.pdf In the text, in the section 4.1.4, pages 41 and 42 :"A pixel is considered to be the rectangular region surrounding the pixel center holding the datavalue. This can be viewed as the Voronoi region of the image grid, as illustrated in the right sideof the figure. Linear interpolation of image values is performed inside the Delaunay region whosecorners are pixel centers." these statements "Voronoi region of the image grid" and "Delaunay region whose corners are pixed centers" - should go.? the image 4.1 "Geometrical concepts associated with the ITK image",? should be redone too. In the image "Linear Interpolation Region Delaunay Region" and "Pixel Coverage Voronoi Region" must be replaced,? This document is used and shared by many and should not include confusing terminology. Thanks again, Celina From: Celina Imielinska To: Matt McCormick Sent: Wednesday, March 28, 2018 9:21 AM Subject: Re: [ITK-dev] ITK Software Guide Matt, thank you for the correction, Celina From: Matt McCormick To: Celina Imielinska Cc: Stephen Aylward ; Bradley Lowekamp ; Insight Developers ; Luis Ibanez Sent: Tuesday, March 27, 2018 5:23 PM Subject: Re: [ITK-dev] ITK Software Guide Thank you for efforts to improve the work, Celina. The ITK Software Guide is a living document, and many students should continue to learn from the body of knowledge that Luis poured out many years ago. Here is a patch for the figure: ??https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/pull/65 and the text: ??http://review.source.kitware.com/#/c/23300/ Thanks,Matt On Tue, Mar 27, 2018 at 4:19 PM, Celina Imielinska wrote: That would be appropriate Thank you! ------------------------------ -------------- On Tue, 3/27/18, Matt McCormick wrote: ?Subject: Re: [ITK-dev] ITK Software Guide ?To: "Celina Imielinska" ?Cc: "Stephen Aylward" , "Bradley Lowekamp" , "Insight Developers" , "Luis Ibanez" ?Date: Tuesday, March 27, 2018, 2:45 PM ?Ah, I see ?now, Celina. Thanks for sharing the screenshots. ?How about removing the mention of ?Voronoi region and Delaunay region from that location in the ?text and changing the annotation in the text to "Pixel ?Centered Region" and "Pixel-Corner Centered ?Region"? ??- ?M ?On Tue, Mar 27, 2018 at ?2:22 PM, Celina Imielinska ?wrote: ?in ?the attached document ?page ?41in ?section4.1.4? ?Defining Origin and Spacing ? From: Matt McCormick ? ? To: Celina Imielinska ? ?Cc: Stephen Aylward ?; ?Bradley Lowekamp ; ?Insight Developers ; ?Luis Ibanez ? Sent: Tuesday, March ?27, 2018 2:09 PM ? Subject: Re: [ITK-dev] ?ITK Software Guide ?Hi Celina, ?I only ?see "Voronoi region" mentioned once ?here: ???https://github.com/ ?InsightSoftwareConsortium/ ITKSoftwareGuide/blob/ ?7eb1f6dda1e5bfe57938f53584113e e771b298a7/SoftwareGuide/ ?Latex/DesignAndFunctionality/ ?HybridSegmentationMethods.tex ?Perhaps we just replace ?"Voronoi region" with ?"region"? ?Other ?improvements to make the language more accurate / precise ?are welcome. ?Thanks,Matt ?On ?Tue, Mar 27, 2018 at 1:59 PM, Celina Imielinska ?wrote: ?Hello Matt, ?thank ?you for your email... ?I ?agree it - but this one of the fundamendat geometric ?constructs used in the Guide - that is just ?ill-named... ?How ?can we name it differently....? definitely, not as Voronoi ?region, nor Delaunay region (completely wrong) ?-let ?us discuss, ?Best, ?Celina ?From: Matt ?McCormick ? To: Celina Imielinska ? ?Cc: Stephen Aylward ?; ?Bradley Lowekamp ; ?Insight Developers ; ?Luis Ibanez ? Sent: Tuesday, March ?27, 2018 1:48 PM ? Subject: Re: [ITK-dev] ?ITK Software Guide ?Hi Celina, ?Improvements to the Software Guide ?are welcome. Please see the README here on how to ?contribute: ???https://github.com/ ?InsightSoftwareConsortium/ ?ITKSoftwareGuide ?Thanks,Matt ?On ?Tue, Mar 27, 2018 at 1:42 PM, Celina Imielinska via ?Insight-developers ?wrote: ?Dear ?All ?(I ?have emailed separately Bill Schroeder at Kitware) ?I ?am very happy that ITK Toolkit has been thriving over so ?many years. Kitware has done amazing job to maintain it and ?to expand it. ?Still, ?I am trying to contact the main co-authors of the currect ?ITK Software Guide. ?I ?am writing about the usage of "Voronoi Region" ?terminology in the recent editions of the ITK Software guide ?- that is very odd and not in agreement with how Voronoi ?Diagram, that is one of the fundamental geometric ?structures, is defined:https://www.cs.ucsb. edu/~suri/ ?cs235/Voronoi.pdf ?Could ?you please email me -? I would like to suggest that if we ?want to use as "geometrical concepts associated with ?the ITK image" "Voronoi region" in a form ?what I consider a degenerative representation of? it - then ?maybe it would be wise to name it differently. Not to ?mention the usage of another oddity:? Delaunay Region - ?what is it? Voronoi Diagram and its dual, Delaunay ?Triangulation are classic geometric constructs that require ?that the points, in the Voronoi diagram, the Voronoi points, ?satisfy: ?"Non-degeneracy ?Condition: Assume no 4 cocircular points, and no 3 ?collinear." ?This ?is violated in the construct included in the Guide and ?referred to as Voronoi Region and Delaunay Region. ?I ?don't mind that the guide is not including any more my? ?original hybrid segmentation contribution that included ?Voronoi Diagram classification?https://core. ac.uk/download/ ?pdf/27299860.pdfI ?woudl like to ask you to discuss what can be done with ?possibly correctingthe odd terminology, ?looking ?forward to hear from? ?Best ?Regards, ?Celina ?Imielinska ?Celina ?Imielinska, PhDPrincipalVesalius ?Technologies LLCPrinceton ?NJcelina_imielinska at yahoo. com609 240 4721 ?PS. ?old version?http://www.sci.utah. ?edu/publications/ibanez03/ ?ItkSoftwareGuide.pdf? ?? ? ?newest?https://itk.org/ ?ItkSoftwareGuide.pdf ?The ITK community is transitioning from this ?mailing list to discourse.itk.org. ?Please join us there! ?______________________________ ________ ?Powered by www.kitware.com ?Visit other Kitware open-source projects at ?http://www.kitware.com/ ?opensource/opensource.html ?Kitware offers ITK Training Courses, for more information ?visit: ?http://kitware.com/products/ ?protraining.php ?Please keep messages on-topic and check the ITK FAQ at: ?http://www.itk.org/Wiki/ITK_ ?FAQ ?Follow this link to subscribe/unsubscribe: ?https://itk.org/mailman/ ?listinfo/insight-developers -------------- next part -------------- An HTML attachment was scrubbed... URL: From matt.mccormick at kitware.com Wed Mar 28 10:18:01 2018 From: matt.mccormick at kitware.com (Matt McCormick) Date: Wed, 28 Mar 2018 10:18:01 -0400 Subject: [ITK-dev] ITK Software Guide In-Reply-To: <1098703884.244169.1522244128697@mail.yahoo.com> References: <798829727.610059.1522181974720.ref@mail.yahoo.com> <798829727.610059.1522181974720@mail.yahoo.com> <1523366140.262107.1522243260582@mail.yahoo.com> <1098703884.244169.1522244128697@mail.yahoo.com> Message-ID: Hi Celina, The patch for this is here: http://review.source.kitware.com/#/c/23300/ - M On Wed, Mar 28, 2018 at 9:35 AM, Celina Imielinska < celina_imielinska at yahoo.com> wrote: > Matt, > > do you plan to correct the actual document? > > https://itk.org/ItkSoftwareGuide.pdf > > In the text, in the section 4.1.4, pages 41 and 42 : > "A pixel is considered to be the rectangular region surrounding the pixel > center holding the data value. This can be viewed as the *Voronoi region > of the image grid,* as illustrated in the right side of the figure. > Linear interpolation of image values is performed inside the* Delaunay > region whose corners are pixel centers*." > > these statements "Voronoi region of the image grid" and "Delaunay region > whose corners are pixed centers" - should go. > > the image 4.1 "Geometrical concepts associated with the ITK image", > should be redone too. In the image "Linear Interpolation Region Delaunay > Region" and "Pixel Coverage Voronoi Region" must be replaced, > > This document is used and shared by many and should not include confusing > terminology. > > Thanks again, > > Celina > ------------------------------ > *From:* Celina Imielinska > *To:* Matt McCormick > *Sent:* Wednesday, March 28, 2018 9:21 AM > > *Subject:* Re: [ITK-dev] ITK Software Guide > > Matt, > > thank you for the correction, > > Celina > > ------------------------------ > *From:* Matt McCormick > *To:* Celina Imielinska > *Cc:* Stephen Aylward ; Bradley Lowekamp < > blowekamp at mail.nih.gov>; Insight Developers ; > Luis Ibanez > *Sent:* Tuesday, March 27, 2018 5:23 PM > *Subject:* Re: [ITK-dev] ITK Software Guide > > Thank you for efforts to improve the work, Celina. The ITK Software Guide > is a living document, and many students should continue to learn from the > body of knowledge that Luis poured out many years ago. > > > Here is a patch for the figure: > > https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/pull/65 > > and the text: > > http://review.source.kitware.com/#/c/23300/ > > > Thanks, > Matt > > On Tue, Mar 27, 2018 at 4:19 PM, Celina Imielinska < > celina_imielinska at yahoo.com> wrote: > > That would be appropriate > > Thank you! > ------------------------------ -------------- > On Tue, 3/27/18, Matt McCormick wrote: > > Subject: Re: [ITK-dev] ITK Software Guide > To: "Celina Imielinska" > Cc: "Stephen Aylward" , "Bradley Lowekamp" < > blowekamp at mail.nih.gov>, "Insight Developers" , > "Luis Ibanez" > Date: Tuesday, March 27, 2018, 2:45 PM > > Ah, I see > now, Celina. Thanks for sharing the screenshots. > How about removing the mention of > Voronoi region and Delaunay region from that location in the > text and changing the annotation in the text to "Pixel > Centered Region" and "Pixel-Corner Centered > Region"? > - > M > On Tue, Mar 27, 2018 at > 2:22 PM, Celina Imielinska > wrote: > in > the attached document > page > 41in > section4.1.4 > Defining Origin and Spacing > > > > From: Matt McCormick > > To: Celina Imielinska > > > Cc: Stephen Aylward > ; > Bradley Lowekamp ; > Insight Developers ; > Luis Ibanez > Sent: Tuesday, March > 27, 2018 2:09 PM > Subject: Re: [ITK-dev] > ITK Software Guide > > > Hi Celina, > I only > see "Voronoi region" mentioned once > here: > https://github.com/ > InsightSoftwareConsortium/ ITKSoftwareGuide/blob/ > 7eb1f6dda1e5bfe57938f53584113e e771b298a7/SoftwareGuide/ > Latex/DesignAndFunctionality/ > HybridSegmentationMethods.tex > Perhaps we just replace > "Voronoi region" with > "region"? > > Other > improvements to make the language more accurate / precise > are welcome. > > Thanks,Matt > > > On > Tue, Mar 27, 2018 at 1:59 PM, Celina Imielinska < > celina_imielinska at yahoo.com> > wrote: > > Hello Matt, > thank > you for your email... > I > agree it - but this one of the fundamendat geometric > constructs used in the Guide - that is just > ill-named... > How > can we name it differently.... definitely, not as Voronoi > region, nor Delaunay region (completely wrong) > -let > us discuss, > Best, > Celina > From: Matt > McCormick > To: Celina Imielinska > > > Cc: Stephen Aylward > ; > Bradley Lowekamp ; > Insight Developers ; > Luis Ibanez > Sent: Tuesday, March > 27, 2018 1:48 PM > Subject: Re: [ITK-dev] > ITK Software Guide > > > > Hi Celina, > Improvements to the Software Guide > are welcome. Please see the README here on how to > contribute: > https://github.com/ > InsightSoftwareConsortium/ > ITKSoftwareGuide > Thanks,Matt > On > Tue, Mar 27, 2018 at 1:42 PM, Celina Imielinska via > Insight-developers > wrote: > > Dear > All > (I > have emailed separately Bill Schroeder at Kitware) > I > am very happy that ITK Toolkit has been thriving over so > many years. Kitware has done amazing job to maintain it and > to expand it. > Still, > I am trying to contact the main co-authors of the currect > ITK Software Guide. > I > am writing about the usage of "Voronoi Region" > terminology in the recent editions of the ITK Software guide > - that is very odd and not in agreement with how Voronoi > Diagram, that is one of the fundamental geometric > structures, is defined:https://www.cs.ucsb. edu/~suri/ > > cs235/Voronoi.pdf > > Could > you please email me - I would like to suggest that if we > want to use as "geometrical concepts associated with > the ITK image" "Voronoi region" in a form > what I consider a degenerative representation of it - then > maybe it would be wise to name it differently. Not to > mention the usage of another oddity: Delaunay Region - > what is it? Voronoi Diagram and its dual, Delaunay > Triangulation are classic geometric constructs that require > that the points, in the Voronoi diagram, the Voronoi points, > satisfy: > "Non-degeneracy > Condition: Assume no 4 cocircular points, and no 3 > collinear." > This > is violated in the construct included in the Guide and > referred to as Voronoi Region and Delaunay Region. > I > don't mind that the guide is not including any more my > original hybrid segmentation contribution that included > Voronoi Diagram classification https://core. ac.uk/download/ > > pdf/27299860.pdfI > woudl like to ask you to discuss what can be done with > possibly correctingthe odd terminology, > looking > forward to hear from > Best > Regards, > Celina > Imielinska > Celina > Imielinska, PhDPrincipalVesalius > Technologies LLCPrinceton > NJcelina_imielinska at yahoo. com609 240 4721 > PS. > old version http://www.sci.utah. > edu/publications/ibanez03/ > ItkSoftwareGuide.pdf > newest https://itk.org/ > ItkSoftwareGuide.pdf > The ITK community is transitioning from this > mailing list to discourse.itk.org. > Please join us there! > > ______________________________ ________ > > Powered by www.kitware.com > > > > Visit other Kitware open-source projects at > > http://www.kitware.com/ > opensource/opensource.html > > > > Kitware offers ITK Training Courses, for more information > visit: > > http://kitware.com/products/ > protraining.php > > > > Please keep messages on-topic and check the ITK FAQ at: > > http://www.itk.org/Wiki/ITK_ > FAQ > > > > Follow this link to subscribe/unsubscribe: > > https://itk.org/mailman/ > listinfo/insight-developers > > > > > > > > > > > > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... 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