[ITK-dev] [ITK-users] [ANN] ITK 4.11 Release Candidate 2 is ready for testing!
Dženan Zukić
dzenanz at gmail.com
Fri Mar 10 17:57:21 EST 2017
The final version was released this week. ITK compiles, but one of the
tests crashes in Release mode. I submitted the bug
<https://developercommunity.visualstudio.com/content/problem/27878/itkstatisticsalgorithmtest-crashes-in-vs2017-and-v.html>
.
On Mon, Jan 30, 2017 at 2:21 PM, Taylor Braun-Jones <taylor at braun-jones.org>
wrote:
> Confirmed on my end as well. Thanks for following up.
>
> On Sun, Jan 29, 2017 at 4:41 PM, Dženan Zukić <dzenanz at gmail.com> wrote:
>
>> RC3 got released on Friday, and it builds ITK without issue!
>>
>> On Thu, Jan 19, 2017 at 5:00 PM, Taylor Braun-Jones <
>> taylor at braun-jones.org> wrote:
>>
>>> Cool, thanks Dženan!
>>>
>>> On Thu, Jan 19, 2017 at 2:14 PM, Dženan Zukić <dzenanz at gmail.com> wrote:
>>>
>>>> ... and more:
>>>>
>>>> Additionally, we've added ITK and VTK libraries from GitHub to our
>>>> daily compiler testing and validations. So in short, from now on we will be
>>>> releasing MSVC compiler versions to the public where live GitHub ITK and
>>>> VTK sources will build clean. That's a promise :).
>>>>
>>>> Thanks,
>>>> Ulzii Luvsanbat
>>>> Visual C++ Team
>>>>
>>>> On Thu, Jan 19, 2017 at 1:21 PM, Dženan Zukić <dzenanz at gmail.com>
>>>> wrote:
>>>>
>>>>> A new reply in that bug report:
>>>>>
>>>>> Hi, there's a lag when we, the compiler team, tags the bug resolved
>>>>> and the fix actually gets included in the VS release. We apologize for
>>>>> that, it's just the way how engineering works to get everything ready in VS
>>>>> to be shipped. This specific bug has been fixed for the VS2017 RC3 release,
>>>>> which is only days away from shipping.
>>>>>
>>>>> If you'd you like to validate your project before that with a private
>>>>> Nuget package of the compiler toolset, then please send me an email here
>>>>> (batul at Microsoft dot com), and I can get you going.
>>>>>
>>>>> On Thu, Jan 19, 2017 at 12:46 PM, Dženan Zukić <dzenanz at gmail.com>
>>>>> wrote:
>>>>>
>>>>>> Hi Taylor,
>>>>>>
>>>>>> I submitted a bug
>>>>>> <https://developercommunity.visualstudio.com/content/problem/4679/compiling-itk-triggers-internal-error.html>
>>>>>> report to Microsoft about it, and somebody said they will add ITK to their
>>>>>> compiler test suite. Also, that crashing bug was supposedly fixed for
>>>>>> "final release".
>>>>>>
>>>>>> Regards,
>>>>>> Dženan
>>>>>>
>>>>>> On Thu, Jan 19, 2017 at 12:18 PM, Taylor Braun-Jones <
>>>>>> taylor at braun-jones.org> wrote:
>>>>>>
>>>>>>> Any chance the 4.11 release could have at least some preliminary
>>>>>>> support for VS2017? Right now it crashes the compiler:
>>>>>>>
>>>>>>> C:\src\itk\modules\core\common\include\itkPromoteType.h(97): fatal
>>>>>>> error C1001: An internal error has occurred in the compiler.
>>>>>>> (compiler file 'msc1.cpp', line 1469)
>>>>>>> To work around this problem, try simplifying or changing the
>>>>>>> program near the locations listed above.
>>>>>>> Please choose the Technical Support command on the Visual C++
>>>>>>> Help menu, or open the Technical Support help file for more
>>>>>>> information
>>>>>>> Internal Compiler Error in C:\PROGRA~2\MIB055~1\2017\COMM
>>>>>>> UN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe. You will be
>>>>>>> prompted to send an error report to Microsoft later.
>>>>>>> INTERNAL COMPILER ERROR in 'C:\PROGRA~2\MIB055~1\2017\COM
>>>>>>> MUN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe'
>>>>>>> Please choose the Technical Support command on the Visual C++
>>>>>>> Help menu, or open the Technical Support help file for more
>>>>>>> information
>>>>>>>
>>>>>>> Taylor
>>>>>>>
>>>>>>> On Mon, Jan 16, 2017 at 4:18 PM, Matt McCormick <
>>>>>>> matt.mccormick at kitware.com> wrote:
>>>>>>>
>>>>>>>> On behalf of the Insight Toolkit community, we are proud to announce
>>>>>>>> that ITK 4.11 release candidate 2 has been tagged and is available
>>>>>>>> for
>>>>>>>> testing! Please take this opportunity to test the new features in
>>>>>>>> the
>>>>>>>> release candidate.
>>>>>>>>
>>>>>>>>
>>>>>>>> To obtain the source code, use the links:
>>>>>>>>
>>>>>>>>
>>>>>>>> https://github.com/Kitware/ITK/archive/v4.11rc02.zip
>>>>>>>> https://github.com/Kitware/ITK/archive/v4.11rc02.tar.gz
>>>>>>>>
>>>>>>>> or
>>>>>>>>
>>>>>>>> git clone https://itk.org/ITK.git
>>>>>>>> cd ITK
>>>>>>>> git checkout -q --detach v4.11rc02
>>>>>>>>
>>>>>>>> For more details, please see the Git documentation [1].
>>>>>>>>
>>>>>>>>
>>>>>>>> A few selected highlights for this release:
>>>>>>>>
>>>>>>>> - Remote Modules were added to: perturb mesh vertices with
>>>>>>>> additive
>>>>>>>> gaussian noise, accurately benchmark computational performance,
>>>>>>>> perform principal components analysis of scalar, vector, and mesh
>>>>>>>> vertex data, create a run-length encoded memory compression scheme
>>>>>>>> for
>>>>>>>> itk::Image, run N-D morphological contour interpolation, interpolate
>>>>>>>> multi-label images, iterate over multiple images simultaneously, and
>>>>>>>> compute inverse displacement fields.
>>>>>>>> - NumPy bridge support is now enabled by default with NumPy array
>>>>>>>> views of multi-component images and VNL vectors and matrices.
>>>>>>>> - Internal HDF5 was updated to the latest upstream version along
>>>>>>>> with a number of other third-party libraries.
>>>>>>>>
>>>>>>>>
>>>>>>>> This release introduces a new template class export specification
>>>>>>>> macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated
>>>>>>>> classes to address failing dynamic_cast's and exception catching
>>>>>>>> across binaries on Mac OSX.
>>>>>>>>
>>>>>>>> Bugs were addressed and improvements were made to how the
>>>>>>>> pseudo-random number generator is used. Tests that rely on the
>>>>>>>> random
>>>>>>>> number generator should explicitly set the global seed at start:
>>>>>>>>
>>>>>>>> itk::Statistics::MersenneTwisterRandomVariateGenerator::GetI
>>>>>>>> nstance()->SetSeed(
>>>>>>>> 121212 );
>>>>>>>>
>>>>>>>> To improve randomness, new instances of the generator start from a
>>>>>>>> different seed; some minor differences in the output of algorithms
>>>>>>>> that uses the generator, like mutual information metrics, should be
>>>>>>>> expected.
>>>>>>>>
>>>>>>>> Additionally, output may change for registration with composite
>>>>>>>> affine
>>>>>>>> transforms; the v4 registration framework now uses corner sampling
>>>>>>>> as
>>>>>>>> opposed to random sampling to estimate their parameter scales.
>>>>>>>>
>>>>>>>>
>>>>>>>> Please test the release candidate and share your experiences on the
>>>>>>>> mailing list, issue tracker, and Gerrit Code Review.
>>>>>>>>
>>>>>>>>
>>>>>>>> An Experimental build, which demonstrates how the test suite
>>>>>>>> performs
>>>>>>>> on your local build system, can be submitted to the dashboard [2]
>>>>>>>> with:
>>>>>>>>
>>>>>>>> mkdir ../ITK-build
>>>>>>>> cd ../ITK-build
>>>>>>>> cmake ../ITK
>>>>>>>> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T
>>>>>>>> Submit
>>>>>>>>
>>>>>>>> Visual Studio builds must also add “-C Release” to the ctest
>>>>>>>> command.
>>>>>>>>
>>>>>>>> Notify the mailing list if there are any unexpected failures.
>>>>>>>> Testing
>>>>>>>> your own applications against the RC is also appreciated.
>>>>>>>>
>>>>>>>>
>>>>>>>> Congratulations to the 31 contributors to this release. We would
>>>>>>>> especially like to recognize the new contributors: Hastings Greer,
>>>>>>>> Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard,
>>>>>>>> Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss
>>>>>>>> Jallais.
>>>>>>>>
>>>>>>>>
>>>>>>>> The 4.11.0 final release is scheduled for January 23rd.
>>>>>>>>
>>>>>>>>
>>>>>>>> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>>>>
>>>>>>>> [2] http://open.cdash.org/index.php?project=Insight
>>>>>>>>
>>>>>>>>
>>>>>>>> New Features
>>>>>>>> ------------
>>>>>>>>
>>>>>>>> * Wrapping Improvements
>>>>>>>> - Python GetArrayFromImage() and GetImageFromArray() from
>>>>>>>> ITKBridgeNumPy are directly accessible from the Python itk
>>>>>>>> namespace.
>>>>>>>> - The itk package loads much faster: individual modules are loaded
>>>>>>>> only when required.
>>>>>>>> - Conversion of ITK images from and to NumPy array using Bridge
>>>>>>>> NumPy supports RGB, RGBA, and Vector images.
>>>>>>>> - VNL vectors and VNL matrices can be converted from and to NumPy
>>>>>>>> objects with respectively the new couple of functions
>>>>>>>> GetArrayFromVnlVector()/GetVnlVectorFromArray() and
>>>>>>>> GetArrayFromVnlMatrix()/GetVnlMatrixFromArray()
>>>>>>>> - The global timestamp is used across all ITK Python modules when
>>>>>>>> built statically
>>>>>>>> - Wrap additional classes such as KernelFunctionBase
>>>>>>>> - itk_python_add_test CMake function added for Python script
>>>>>>>> testing
>>>>>>>> in ITK modules
>>>>>>>>
>>>>>>>> * New Remote Modules
>>>>>>>> - DVMeshNoise
>>>>>>>> - Perturbing mesh vertices with additive gaussian noise
>>>>>>>> - http://hdl.handle.net/10380/3567
>>>>>>>> - PerformanceBenchmarking
>>>>>>>> - Accurate benchmarking of computational performance
>>>>>>>> - http://hdl.handle.net/10380/3557
>>>>>>>> - PrincipalComponentsAnalysis
>>>>>>>> - Principal components analysis of scalar, vector, and mesh
>>>>>>>> vertex data
>>>>>>>> - http://hdl.handle.net/10380/3386
>>>>>>>> - RLEImage
>>>>>>>> - Run-length encoded memory compression scheme for itk::Image
>>>>>>>> - http://hdl.handle.net/10380/3562
>>>>>>>> - MorphologicalContourInterpolation
>>>>>>>> - N-D morphological contour interpolation
>>>>>>>> - http://hdl.handle.net/10380/3563
>>>>>>>> - GenericLabelInterpolator
>>>>>>>> - A generic interpolator for multi-label images
>>>>>>>> - http://hdl.handle.net/10380/3506
>>>>>>>> - MultipleImageIterator
>>>>>>>> - Iterate over multiple images simultaneously
>>>>>>>> - http://hdl.handle.net/10380/3455
>>>>>>>> - FixedPointInverseDisplacementField
>>>>>>>> - Computes inverse displacement field
>>>>>>>> - http://hdl.handle.net/10380/3222
>>>>>>>>
>>>>>>>> * Core Improvements
>>>>>>>> - New ITK_TEMPLATE_EXPORT for templated classes resolves
>>>>>>>> cross-binary dynamic_cast on Mac OSX
>>>>>>>> - New MersenneTwisterRandomVariateGenerator instances are
>>>>>>>> initialized with different seeds
>>>>>>>> - Use compiler feature detection in CMake for C++11 features, etc.
>>>>>>>> - New CMake macro itk_module_add_library for creating libraries
>>>>>>>> in ITK modules
>>>>>>>> - Improved support for ccache and distcc with
>>>>>>>> CMAKE_<LANG>_COMPILER_LAUNCHER (CMake >=3.4 required)
>>>>>>>> - Support for .sha512 ExternalData content links
>>>>>>>> - GitHub Pages and data.kitware.com ExternalData repositories
>>>>>>>> added
>>>>>>>> - GPGPU system support for C++11
>>>>>>>> - Support of new compilers: Visual Studio 15 and XCode 8.2.1
>>>>>>>> (clang-800.0.42.1)
>>>>>>>>
>>>>>>>> * Filtering Improvements
>>>>>>>> - HessianToObjectnessMeasure moved out of the ITKReview module
>>>>>>>> - New UnsharpMaskImageFilter for image edge enhancement
>>>>>>>>
>>>>>>>> * IO Improvements
>>>>>>>> - TransformFactory class has been moved to a separate module
>>>>>>>> - Spline order added to BSplineTransform identifier
>>>>>>>> - Improved NIFTI orientation support
>>>>>>>>
>>>>>>>> * Documentation Improvements
>>>>>>>> - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>>>>>>>>
>>>>>>>> * Third Party Library Updates
>>>>>>>> - pygccxml updated to v1.8.0
>>>>>>>> - VNL updated to latest upstream (2016.07.06)
>>>>>>>> - SWIG updated to v3.0.11
>>>>>>>> - KWSys updated to latest upstream (2016.11.21)
>>>>>>>> - HDF5 updated to v1.8.17
>>>>>>>> - SCIFIO updated to latest upstream (2016.12.01)
>>>>>>>> - DCMTK updated to 3.6.1_20121012
>>>>>>>> - CastXML to latest upstream (2016.01.28)
>>>>>>>>
>>>>>>>> * Improved Code Coverage -- we are at 85.44%!
>>>>>>>> - Jon Haitz-Legarreta's extensive code coverage improvements
>>>>>>>> - https://blog.kitware.com/why-should-we-spend-time-writing-te
>>>>>>>> sts/
>>>>>>>>
>>>>>>>> * *Lots* of important bug fixes
>>>>>>>>
>>>>>>>> * And much more! See details in the log below.
>>>>>>>>
>>>>>>>>
>>>>>>>> Changes from v4.11rc01 to v4.11rc02
>>>>>>>> -----------------------------------
>>>>>>>>
>>>>>>>> Bradley Lowekamp (5):
>>>>>>>> BUG: Remove unused SimpleImageRegistrationTest baselines
>>>>>>>> ENH: Expose GetNextSeed method in MersenneTwiseter Generator
>>>>>>>> BUG: Add option for fixed seed or wall clock seed for sampling
>>>>>>>> BUG: Use metric random seed in v3 examples
>>>>>>>> BUG: Prefer setting seed at algorithm in "v4" tests.
>>>>>>>>
>>>>>>>> Francois Budin (3):
>>>>>>>> ENH: Update BridgeNumPy to latest version on 2017.01.08 to
>>>>>>>> address ITK-3511
>>>>>>>> BUG: Extra \$ in doxygen comment
>>>>>>>> BUG: Binary include directory added only if enabled shared
>>>>>>>>
>>>>>>>> Jon Haitz Legarreta (2):
>>>>>>>> DOC: Document itkLabelOverlapMeasuresImageFilter methods.
>>>>>>>> DOC: Fix ITKImageNoise filters' doc TeX errors.
>>>>>>>>
>>>>>>>> Matthew McCormick (1):
>>>>>>>> BUG: Remove invalid ImageRegistration4Test.png.sha512
>>>>>>>>
>>>>>>>> Max Smolens (1):
>>>>>>>> DOC: Fix itkUnsharpMaskImageFilter documentation typos
>>>>>>>>
>>>>>>>> Simon Rit (1):
>>>>>>>> BUG: ITK-based software was crasing when thread creation failed
>>>>>>>>
>>>>>>>>
>>>>>>>> Changes from v4.10.0 to v4.11rc01
>>>>>>>> ---------------------------------
>>>>>>>>
>>>>>>>> Bill Lorensen (4):
>>>>>>>> COMP: Restore support for clang 3.0 compiler
>>>>>>>> COMP: Consistent use of ModifiedTimeType
>>>>>>>> ENH: Bump WikiExamples remote module version
>>>>>>>> ENH: Bump WikiExamples version
>>>>>>>>
>>>>>>>> Bradley Lowekamp (57):
>>>>>>>> ENH: Add registered TrasformIO's to exception
>>>>>>>> ENH: Use template or constant for loop stop condition
>>>>>>>> ENH: Updating SWIG version to 3.0.9
>>>>>>>> COMP: Address VS9 ambiguous std::abs call in Haung calculator
>>>>>>>> COMP: Fix undefined NumericTraits::Zero and One errors with
>>>>>>>> mingw64
>>>>>>>> BUG: Fix segfault if ~CleanUpObjectFactory called multiple
>>>>>>>> times
>>>>>>>> BUG: Address itkHDF5ImageIO test failures for mingw64
>>>>>>>> BUG: demonstrate dynamic_cast failure when reading transforms
>>>>>>>> BUG: Address itkHDF5ImageIO test failures for mingw64
>>>>>>>> ENH: Updating SWIG version to 3.0.10
>>>>>>>> ENH: Enable CMP0063 New behavior
>>>>>>>> COMP: Enable hidden visibility property with vxl static
>>>>>>>> libraries
>>>>>>>> COMP: Enable hidden visibility property with HDF5 static
>>>>>>>> libraries
>>>>>>>> COMP: Enable hidden visibility property with HDF5 static
>>>>>>>> libraries
>>>>>>>> BUG: Match Add2 function to AddImageFilter documentation
>>>>>>>> ENH: Improve support for std::complex with PowImageFilter
>>>>>>>> ENH: Explicitly mark required files for dependent tests
>>>>>>>> COMP: Bypass XCode 7.3,8 internal compilation error
>>>>>>>> COMP: Address CMake configuration error with itkJPEG2000Test03
>>>>>>>> property
>>>>>>>> BUG: Correct test's REQUIRED_FILES to only the input.
>>>>>>>> ENH: move HessianToObjectnessMeasure filter out of Review
>>>>>>>> ENH: Separate TransformFactory class into separate module
>>>>>>>> DOC: Add links between similar label to rgb filters
>>>>>>>> ENH: Separate data from function calls
>>>>>>>> COMP: Fix changed Graft method
>>>>>>>> ENH: Reduce template dependencies on CalculateRotationMatrix
>>>>>>>> ENH: Add Functor Accessors to LabelMapToRGB filter
>>>>>>>> BUG: Enable VirtualDomain and FixedTransform in RegMethv4
>>>>>>>> BUG: Use BSpline Order 3 for 2D in transform factory.
>>>>>>>> ENH: Add spline order to BSplineTransform's string id
>>>>>>>> ENH: Adding initial CircleCi configuration file
>>>>>>>> COMP: Fix float to unsigned integer conversion warnings
>>>>>>>> BUG: Include installed modules in ITK_MODULES_ENABLED
>>>>>>>> COMP: Address CMake error that ITKGPUCommon is not in export
>>>>>>>> COMP: Address wrong library types with VS and shared libraries
>>>>>>>> BUG: Ensure CreateImageIO is concurrent thread safe
>>>>>>>> ENH: Mark HDF5 CMake options as internal
>>>>>>>> COMP: Add template export declaration for ParametricPath
>>>>>>>> COMP: Correct TEMPLATE_EXPLICIT definition in Path module
>>>>>>>> ENH: Factor out common code in the TrasformFactoryBase
>>>>>>>> registration
>>>>>>>> ENH: Add CMake variable for max transform dimension, defaults 4
>>>>>>>> ENH: Create CMake module to check for private RTTI
>>>>>>>> compatibility
>>>>>>>> ENH: Improving setting of default
>>>>>>>> ITK_TEMPATE_VISIBILITY_DEFAULT
>>>>>>>> COMP: Correct ifndef value to allow user defined
>>>>>>>> ITK_TEMPLATE_EXPORT
>>>>>>>> BUG: Add explicit instantiate for ObjectToObjectOptimizerBase
>>>>>>>> COMP: Use add_definitions for CMake 2.8.9 compatibility
>>>>>>>> COMP: Add warning suppression for distcc warning
>>>>>>>> ENH: Explicitly instantiate the optimizer base over float
>>>>>>>> BUG: Use IsLinear to check if transform is "affine"
>>>>>>>> ENH: Remove unneeded includes of random iterator header
>>>>>>>> ENH: Improve thread-safety for Generator, and unique New
>>>>>>>> sequence
>>>>>>>> ENH: Do not use global random generator
>>>>>>>> BUG: Update v3 registration metrics to use local seed
>>>>>>>> ENH: Prefer setting local seed over global in tests.
>>>>>>>> ENH: Update SWIG to latest 3.0.11 release
>>>>>>>> BUG: relax testing parameters for v3 translation registration
>>>>>>>> BUG: Restore baseline for debug registration
>>>>>>>>
>>>>>>>> Caspar Goch (2):
>>>>>>>> BUG: Use printable type for RGBA pixel ostream for ITK-3501
>>>>>>>> STYLE: Remove extra space for ITK-3501
>>>>>>>>
>>>>>>>> Christina Rossmanith (1):
>>>>>>>> DOC: Added more details to the class Doxygen documentation.
>>>>>>>>
>>>>>>>> Davis Vigneault (2):
>>>>>>>> COMP: VCL_DEFINE_SPECIALIZATION not defined
>>>>>>>> ENH: Add remote module DVMeshNoise
>>>>>>>>
>>>>>>>> Dženan Zukić (27):
>>>>>>>> BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES)
>>>>>>>> ENH: Adding MultipleImageIterator as a remote module
>>>>>>>> COMP: enables TBB 4.4 back-end for VTK7's SMP
>>>>>>>> COMP: enabling position independent code flag for FFTW
>>>>>>>> ENH: adding configuration file for code reformatting tool
>>>>>>>> clang-format
>>>>>>>> ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3
>>>>>>>> COMP: Fixing -fPIC flag passing with Ninja build system
>>>>>>>> ENH: Adding RLEImage as a remote module
>>>>>>>> ENH: Updating uncrustify configuration to current git version
>>>>>>>> STYLE: better compliance with ITK style
>>>>>>>> STYLE: A new option in uncrustify, updating the config file
>>>>>>>> accordingly
>>>>>>>> ENH: Adding MorphologicalContourInterpolation as a remote
>>>>>>>> module
>>>>>>>> ENH: improving documentation
>>>>>>>> BUG: fixing buffer growing endlessly, as reported by Timothee
>>>>>>>> Evain
>>>>>>>> BUG: fixing buffer growing endlessly, as reported by Timothee
>>>>>>>> Evain
>>>>>>>> STYLE: default uncrustify configuration file is less aggressive
>>>>>>>> COMP: Fixing warning
>>>>>>>> COMP: VS15 compiler fix
>>>>>>>> BUG: casting -9 to unsigned produced unwanted result
>>>>>>>> BUG: Ensuring consistency between debug and release
>>>>>>>> COMP: Updating LesionSizingToolkit after some recent compile
>>>>>>>> fixes
>>>>>>>> COMP: respect option METAIO_USE_NAMESPACE
>>>>>>>> ENH: updating version of AnisotropicDiffusionLBR
>>>>>>>> ENH: adding UnsharpMaskingImageFilter
>>>>>>>> COMP: explicitly cast to output type
>>>>>>>> BUG: double call to update would cause empty output image
>>>>>>>> ENH: Updating RLEImage remote module. Change-log:
>>>>>>>>
>>>>>>>> Eugene Prilepin (4):
>>>>>>>> ENH: Add the "ITK_USE_GPU" to ITK Config
>>>>>>>> BUG: Fix API for set/get "LaplacianImageFilter" object
>>>>>>>> ENH: Add support of images types with the 'CovariantVector'
>>>>>>>> pixel type
>>>>>>>> ENH: Add python test for the 'GradientVectorFlowImageFilter'
>>>>>>>> wrap
>>>>>>>>
>>>>>>>> Francois Budin (52):
>>>>>>>> ENH: Adding GetArrayFromImage in python itk namespace
>>>>>>>> ENH: Adding GetImageFromArray in python itk namespace
>>>>>>>> ENH: *_WRAP_* variable per external module
>>>>>>>> BUG: ImportImageFilter not responsible of memory management
>>>>>>>> ENH: New remote module GenericLabelInterpolator
>>>>>>>> DOC: SetNumberOfOutputs had wrong comment
>>>>>>>> BUG: lazyAttributes dictionary keys could be over-ridden
>>>>>>>> BUG: lazyAttributes dictionary keys could be over-ridden
>>>>>>>> BUG: Fix recent update of HDF5 (1.8.17)
>>>>>>>> ENH: Update SCIFIO to latest version on 08/23/2016
>>>>>>>> ENH: Addition of the remote module
>>>>>>>> FixedPointInverseDisplacementField
>>>>>>>> ENH: Update SCIFIO to latest version on 08/29/2016
>>>>>>>> BUG: Path to commit was relative instead of absolute
>>>>>>>> ENH: Path to SetupForDevelopment is relative, not absolute
>>>>>>>> BUG: LSMImageIO write function was not checking image dimension
>>>>>>>> BUG: LSMImageIO was not checking correctly image dimension
>>>>>>>> BUG: Missing associated test data
>>>>>>>> BUG: Missing associated test data
>>>>>>>> ENH: Bump CMakeLists.txt version to 4.10.1.
>>>>>>>> BUG: Quotes are not escaped in configured cmake file
>>>>>>>> ENH: Improving API of Graft() in itk::Image
>>>>>>>> ENH: Updating ITKGenericLabelInterpolator remote module
>>>>>>>> ENH: Update ITKIOTransformDCMTK remote module
>>>>>>>> BUG: Factory registration should depend on ITK_BUILD_SHARED
>>>>>>>> COMP: Updating DCMTK compilation for Ninja
>>>>>>>> ENH: Update version of DCMTK to 3.6.1_20121012
>>>>>>>> ENH: Update SCIFIO to latest version on 10/25/2016
>>>>>>>> BUG: Swig and PCRE do not support space in installation paths
>>>>>>>> BUG: exit() call from within piped commands was not exiting
>>>>>>>> the script
>>>>>>>> BUG: Typo in folder creation command
>>>>>>>> ENH: Only display message for transform registered multiple
>>>>>>>> times in debug
>>>>>>>> ENH: Image spacing must be positive
>>>>>>>> BUG: Supported extensions by PNG IO were not added in
>>>>>>>> constructor.
>>>>>>>> DOC: Documentation in itkRBGAPixel and itkRGBPixel was
>>>>>>>> incorrect.
>>>>>>>> ENH: Update SCIFIO to lastest (2016.12.01)
>>>>>>>> ENH: FixedPointInverseDisplacementField moved to
>>>>>>>> InsightSoftwareConsortium
>>>>>>>> COMP: Remove compilation warnings
>>>>>>>> ENH: Improved support of ccache and distcc
>>>>>>>> BUG: GPUImage regression due to API change.
>>>>>>>> ENH: Update Bridge Numpy (2016.12.05)
>>>>>>>> ENH: Update VariationalRegistration to remove warnings during
>>>>>>>> compilation
>>>>>>>> ENH: FindPythonLibs does not support both debug and release
>>>>>>>> python libraries
>>>>>>>> ENH: Update VariationalRegistration
>>>>>>>> BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of
>>>>>>>> itk::ImageBase
>>>>>>>> BUG: Missing ITK_TEMPLATE_EXPORT in
>>>>>>>> itkOptimizerParametersHelper
>>>>>>>> BUG: Missing ITK_TEMPLATE_EXPORT in templated class
>>>>>>>> BUG: Remove linkage warnings on MacOS
>>>>>>>> BUG: HDF5 CMake installation directory variable had not been
>>>>>>>> updated
>>>>>>>> BUG: Missing include header in AnisotropicDiffusionBLR remote
>>>>>>>> module hxx files
>>>>>>>> COMP: Silencing unused variable warning in itkTimeStamp
>>>>>>>> STYLE: Improve style checking by using module
>>>>>>>> ITKKWStyleOverwrite.txt
>>>>>>>> COMP: OS*Barrier functions are deprecated on MacOS 10.12
>>>>>>>>
>>>>>>>> GCC-XML Upstream (1):
>>>>>>>> ENH: pygccxml v1.8.0 (reduced)
>>>>>>>>
>>>>>>>> Gert Wollny (1):
>>>>>>>> BUG: Relax vnl_complex floating point comparisons for i386
>>>>>>>>
>>>>>>>> Gilles Filippini (1):
>>>>>>>> BUG: Use NATIVE_HBOOL for encoding HDF5 types.
>>>>>>>>
>>>>>>>> HDF Group (1):
>>>>>>>> ENH: hdf5 1.8.17-r30218 (reduced)
>>>>>>>>
>>>>>>>> Hans Johnson (23):
>>>>>>>> COMP: Use cmake WriteCompilerDetectionHeader
>>>>>>>> ENH: Use itk_compiler_detection versions
>>>>>>>> COMP: Need ITK_NOEXCEPT_OR_THROW macro.
>>>>>>>> COMP: Provide consistent granular C++11 support
>>>>>>>> STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT
>>>>>>>> STYLE: Prefer to use consistent definitions
>>>>>>>> COMP: Improve robustness of identifying the compiler standard
>>>>>>>> used
>>>>>>>> BUG: try_compile for AlignAs were always failing
>>>>>>>> STYLE: Provide a well documented macro for repeated code
>>>>>>>> STYLE: Delete functions in consistent way
>>>>>>>> COMP: GPU baseclass ivars need to be protected
>>>>>>>> COMP: Remove unnecessary circular dependancy
>>>>>>>> COMP: Add long long usage for HDF5
>>>>>>>> COMP: Add long long usage for HDF5
>>>>>>>> STYLE: Prefer static small array to dynamic array
>>>>>>>> BUG: Confusing interface for FFTW wisdom files
>>>>>>>> STYLE: Output dimension from OutputImageType
>>>>>>>> STYLE: Code review style cleanups
>>>>>>>> STYLE: Prefer to use ITK AssertOrThrow macros
>>>>>>>> ENH: Add OverrideBoundaryCondition logic
>>>>>>>> ENH: Provide mechanism for enhanced NIFTI support
>>>>>>>> BUG: Use NIFTI sform/qform conventions correctly
>>>>>>>> ENH: Remove ambiguity about sform/qform
>>>>>>>>
>>>>>>>> Hastings Greer (8):
>>>>>>>> BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically
>>>>>>>> BUG: make itkTriangleHelper instantiable to ease wrapping
>>>>>>>> BUG: remove lsqr because of license issues ITK 1160
>>>>>>>> BUG: make itkTriangleHelper instantiable to ease wrapping
>>>>>>>> BUG: initialize X to zero in lsmr Solve
>>>>>>>> BUG: Labled Point Set Registration: test multiple labels
>>>>>>>> BUG: Fix python wrapping of Cuberille remote module
>>>>>>>> BUG: Add test demonstrating Python global timestamp issue
>>>>>>>>
>>>>>>>> Jean-Christophe Fillion-Robin (5):
>>>>>>>> STYLE: UseITK: Set ImageIO exceptions using new convention.
>>>>>>>> See #3393
>>>>>>>> STYLE: MeshIO: Moves virtual destructor into cpp files. See
>>>>>>>> #3393
>>>>>>>> STYLE: Update MeshIO factories to use RegisterFactoryInternal.
>>>>>>>> See #3393
>>>>>>>> STYLE: MeshIO: Move MeshFileWriterException into its own file.
>>>>>>>> See #3393
>>>>>>>> STYLE: MeshIO: Remove unused include from headers. See #3393
>>>>>>>>
>>>>>>>> Johan Andruejol (3):
>>>>>>>> ENH: Add missing itkKernelFunctionBase wrapping
>>>>>>>> ENH: Add PrincipalComponentsAnalysis remote module
>>>>>>>> COMP: Override cannot be used with inline
>>>>>>>>
>>>>>>>> Jon Haitz Legarreta (216):
>>>>>>>> ENH: Improve itkFlatStructutingElement coverage.
>>>>>>>> ENH: Improve itkPathToImageFilter class coverage.
>>>>>>>> ENH: Improve itkIsolatedWatershedImageFilter coverage.
>>>>>>>> ENH: Improve itkLogSigmoidTransferFunction coverage.
>>>>>>>> STYLE: Improve itkBSplineTransform doc style.
>>>>>>>> ENH: Improve GaborKernelFunctionCoverage.
>>>>>>>> PERF: Remove duplicate itkMath include
>>>>>>>> STYLE: Move the PrintSelf method to the end
>>>>>>>> STYLE: Improve the itkScalarToRGBColormapImageFilter style.
>>>>>>>> STYLE: Delete duplicate method documentation
>>>>>>>> STYLE: Remove method documentation from implementation file
>>>>>>>> STYLE: Improve GACLevelSet classes' style
>>>>>>>> STYLE: Improve test style
>>>>>>>> ENH: Improve itkGaussianDerivativeImageFilter coverage.
>>>>>>>> ENH: Improve the itkScalarToRGBColormapImageFilter coverage
>>>>>>>> STYLE: Improve itkScalarToRGBColormap test style
>>>>>>>> ENH: Improve GACLSImageFilter classes' coverage
>>>>>>>> STYLE: Improve comment style in GACLS tests
>>>>>>>> ENH: Improve itkImportImageFilter coverage
>>>>>>>> ENH: Improve itkVideoFileReader coverage
>>>>>>>> ENH: Improve itkVideoFileWriter coverage
>>>>>>>> STYLE: Improve the itkVideoFileWriter style.
>>>>>>>> STYLE: Imrpove itkVideoFileReader style.
>>>>>>>> ENH: Improve the itkBSplineControlPointImageFunction coverage
>>>>>>>> STYLE: Improve the itkIntensityWindowingImageFilter style
>>>>>>>> STYLE: Improve the itkIntensityWindowingImageFilter test style
>>>>>>>> ENH: Improve ImageToSpatialObjectRegistrationMethod coverage
>>>>>>>> STYLE: Improve test style
>>>>>>>> ENH: Improve MaskNeighborhoodOperatorImageFilter coverage
>>>>>>>> ENH: Improve itkMeshFileWriter coverage
>>>>>>>> ENH: Improve RescaleIntensityImageFilter coverage.
>>>>>>>> ENH: Improve itkClampImageFilter coverage.
>>>>>>>> BUG: Fix ivar type casting in PrintSelf.
>>>>>>>> STYLE: Improve MRIBiasFieldCorrectionFilter style.
>>>>>>>> ENH: Improve MRIBiasFieldCorrectionFilter coverage.
>>>>>>>> ENH: Improve itkIntensityWindowingImageFilter coverage
>>>>>>>> BUG: Fix Run-time type information in CSV module classes.
>>>>>>>> ENH: Improve the itkHistogram class code coverage.
>>>>>>>> DOC: Fix documentation typo.
>>>>>>>> STYLE: Improve the ImproveRescaleIntensityImageFilter style.
>>>>>>>> PERF: Make the itkVideoFileReader ivars private
>>>>>>>> PERF: Make itkVideoFileWriter ivars private
>>>>>>>> ENH: Improve coverage for itk::OrientImageFilter.
>>>>>>>> STYLE: Improve itk::OrientImageFilter class style.
>>>>>>>> ENH: Improve itkCSVNumericObjectFileWriter coverage.
>>>>>>>> ENH: Add missing standard class typdefs.
>>>>>>>> ENH: Improve itkVoronoiSegmentationImageFilter coverage.
>>>>>>>> ENH: Improve itkVoronoiSegmentationImageFilter style.
>>>>>>>> STYLE: Improve the MalahanobisDistanceThresholdImageFunction
>>>>>>>> style.
>>>>>>>> ENH: Improve coverage for itkMalahanobisDistanceThreshold.
>>>>>>>> ENH: Improve itk::MinimumMaximumImageCalculator coverage.
>>>>>>>> ENH: Improve itkMinimumMaximumImageCalculator style.
>>>>>>>> BUG: Fix type mismatch in test.
>>>>>>>> STYLE: Improve itkPolylineMaskImagefilter style.
>>>>>>>> ENH: Improve itkPolylineMaskImageFilter coverage.
>>>>>>>> ENH: Improve itkFileListVideoStyle.
>>>>>>>> ENH: Improve itkLandmarkBasedTransformInitializer coverage.
>>>>>>>> ENH: Add baseline image to itkPolylineMaskImageFilter test.
>>>>>>>> ENH: Improve coverage for itkBSplineTransformInitializer.
>>>>>>>> STYLE: Improve itkBSplineTransformInitializer doc style.
>>>>>>>> ENH: Enhance itkBSplineTransformInitializer implementation.
>>>>>>>> DOC: Fix typo in method documentation.
>>>>>>>> ENH: Improve the itkRegularStepGradientDescentOptimizerv4
>>>>>>>> style.
>>>>>>>> STYLE: Improve the itkSimpleContourExtractorImageFilter style.
>>>>>>>> ENH: Exercise the class' Get methods.
>>>>>>>> ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter.
>>>>>>>> ENH: Improve style for itkThresholdLabelerImageFilter.
>>>>>>>> ENH: Improve itkThresholdLabelerImageFilter coverage.
>>>>>>>> ENH: Get internal ImageIO via a const macro.
>>>>>>>> ENH: Improve the itkSimpleContourExtractorImageFilter
>>>>>>>> coverage.
>>>>>>>> STYLE: Improve the itkMetaArray class style.
>>>>>>>> ENH: Improve MetaArrayReader/Writer coverages.
>>>>>>>> ENH: Improve the itkCovarianceImageFunction style.
>>>>>>>> STYLE: Improve itkVoronoiDiagram2DGenerator style.
>>>>>>>> ENH: Improve VoronoiDiagram2DGenerator coverage.
>>>>>>>> STYLE: Improve the itkBayesianClassifierImageFilter style.
>>>>>>>> STYLE: Improve the itkMetaArrayWriter style.
>>>>>>>> ENH: Improve itkCovarianteImageFunction coverage.
>>>>>>>> COMP: Fix signed/unsigned int comparison warning.
>>>>>>>> DOC: Improve itkGrayscaleDilateImageFilter documentation.
>>>>>>>> DOC: Improve documentation for itkGrayscaleErodeImageFilter.
>>>>>>>> DOC: Improve ConfigureHistogram method documentation.
>>>>>>>> STYLE: Improve the itkMovingHistogramMorphologyImagefilter
>>>>>>>> style.
>>>>>>>> BUG: Fix Superclass name in RTTI.
>>>>>>>> STYLE: Improve itkGaussianInterpolateImageFunction style.
>>>>>>>> ENH: Improve coverage for itkGaussianInterpolateImageFunction.
>>>>>>>> ENH: Improve itkBayesianClassifierImageFilter coverage.
>>>>>>>> ENH: Add itkBSplineControlPointImageFilter RTTI.
>>>>>>>> STYLE: Improve itkBSplinecontrolPointImageFilter style.
>>>>>>>> ENH: Improve itkBSplineControlPointImageFilter coverage.
>>>>>>>> ENH: Improve coverage for itkRegularStepGradientDescentO
>>>>>>>> ptimizerv4.
>>>>>>>> STYLE: Improve the class implementation file style.
>>>>>>>> STYLE: Improve the itkResampleImageFilter style.
>>>>>>>> DOC: Fix typo in GetMTime method doc.
>>>>>>>> STYLE: Remove out-of-body implementation doc
>>>>>>>> ENH: Improve itkResampleImageFilter coverage.
>>>>>>>> ENH: Improve itkAbsImageAdaptor and Filter coverage.
>>>>>>>> BUG: Fix itkLSMImageIO class' Superclass name.
>>>>>>>> ENH: Improve the itkInterpolateImagePointsFilter coverage.
>>>>>>>> ENH: Improve itkPowImageFilter coverage.
>>>>>>>> BUG: Fix ConvolutionImageFilter RTTI.
>>>>>>>> STYLE: Use initialization lists.
>>>>>>>> STYLE: Improve BinaryFunctorImageFilter style.
>>>>>>>> ENH: Improve itkMinimumImageFilter code coverage.
>>>>>>>> BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion.
>>>>>>>> ENH: Improve MaximumImageFilter coverage.
>>>>>>>> BUG: Fix conversion to PixelType conversion.
>>>>>>>> COMP: Fix double to unsigned char conversion warning.
>>>>>>>> ENH: Improve coverage for itkNormalizeToConstantImageFilter.
>>>>>>>> BUG: Fix itkSquaredDifferenceErrorFunction RTTI.
>>>>>>>> ENH: Improve itkMeanImageFunctionCoverage.
>>>>>>>> ENH: Improve itkSquareImageFilter coverage.
>>>>>>>> STYLE: Improve the itkSquaredDifferenceErrorFunction style.
>>>>>>>> STYLE: Enhance style for itkNormalizeToConstantImageFilter.
>>>>>>>> STYLE: Improve itkMeanImageFunction style.
>>>>>>>> ENH: Remove unnecesary call to filter print.
>>>>>>>> ENH: Improve itkRegionOfInterestImageFilter coverage.
>>>>>>>> STYLE: Improve itkRegionOfInterestImageFilter style.
>>>>>>>> STYLE: Improve itkPasteImageFilter style.
>>>>>>>> STYLE: Improve itkJoinSeriesImageFilter style.
>>>>>>>> BUG: Fix itkPadLabelMapFilter RTTI Superclass.
>>>>>>>> COMP: Address std::cout.precision conversion warning.
>>>>>>>> ENH: Improve itkBayesianClassifiertImageFilter coverage.
>>>>>>>> ENH: Improve itkPadLabelMapFilter coverage.
>>>>>>>> ENH: Improve itkJoinSeriesImageFilter coverage.
>>>>>>>> ENH: Improve the itkPasteImageFilter coverage.
>>>>>>>> ENH: Improve MeanImageFilter coverage.
>>>>>>>> COMP: Address std::cout.precision conversion warning.
>>>>>>>> ENH: Improve TernaryMagnitudeImageFilter coverage.
>>>>>>>> ENH: Improve FFTConvolutionImageFilter coverage.
>>>>>>>> DOC: Fix class documentation in ternary magnitude filters.
>>>>>>>> ENH: Improve ConstrainedValueDifferenceImageFilter coverage.
>>>>>>>> ENH: Improve AndImageFilter coverage.
>>>>>>>> ENH: Add baseline test to itkTernaryMagnitudeImageFilter.
>>>>>>>> ENH: Use MD5 comparison framework in baseline test.
>>>>>>>> ENH: Improve itk::VectorRescaleIntensityImageFilter coverage.
>>>>>>>> STYLE: Improve the itkVectorRescaleIntensityImageFilter style.
>>>>>>>> ENH: Print missing ivar in filter PrintSelf method.
>>>>>>>> ENH: Improve itkComplexToImaginaryFilter coverage.
>>>>>>>> ENH: Improve itkComplexToPhaseImageFilter coverage.
>>>>>>>> ENH: Improve itkComplexToModulusImageFilter coverage.
>>>>>>>> ENH: Improve itkComplexToRealImageFilter coverage.
>>>>>>>> ENH: Improve itkVectorResampleImageFilter coverage.
>>>>>>>> ENH: Add GetTransform method.
>>>>>>>> ENH: Improve itkConstrainedValueAdditionImageFilter coverage.
>>>>>>>> ENH: Improve itkModulusImageFilter coverage.
>>>>>>>> ENH: Improve itkLog10ImageFilter coverage.
>>>>>>>> ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter
>>>>>>>> coverage.
>>>>>>>> ENH: Improve itkLogImageFilter coverage.
>>>>>>>> ENH: Improve itkInvertIntensityImageFilter coverage.
>>>>>>>> STYLE: Improve itkInvertIntensityImageFilter style.
>>>>>>>> DOC: Add missing doc to itkInvertIntensityImageFilter.
>>>>>>>> STYLE: Improve itkIntensityWindowingImageFilter style.
>>>>>>>> STYLE: Use initialization lists.
>>>>>>>> ENH: Improve itkIntensityWindowingImageFilter coverage.
>>>>>>>> ENH: Improve itkNaryMaximumImageFilter coverage.
>>>>>>>> COMP: Fix std::precision type casting warning.
>>>>>>>> ENH: Improve itkPointSetToPointSetRegistrationMethod coverage.
>>>>>>>> STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod
>>>>>>>> style.
>>>>>>>> ENH: Remove SmartPointers being explicitly initialized to null.
>>>>>>>> STYLE: Improve the itkPointSetToImageRegistrationMethod style.
>>>>>>>> ENH: Improve itkPointSetToImageRegistration coverage.
>>>>>>>> STYLE: Change the name of the itkPointSetToImageRegistrationMethod
>>>>>>>> test.
>>>>>>>> STYLE: Improve itkVectorResampleImageFilter style.
>>>>>>>> STYLE: Improve the itkAntiAliasBinaryImageFilter style.
>>>>>>>> ENH: Improve trigonometric function filters' coverage.
>>>>>>>> STYLE: Remove test names from std::out messages.
>>>>>>>> ENH: Improve Boolean Algebra ImageFilters coverage.
>>>>>>>> STYLE: Improve the EuclideanDistancePointMetric style.
>>>>>>>> ENH: Improve itkSigmoidImageFilter coverage.
>>>>>>>> STYLE: Improve itkCropImageFilter style.
>>>>>>>> ENH: Improve itkCropImageFilter coverage.
>>>>>>>> ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage.
>>>>>>>> ENH: Improve itkRescaleIntensityImageFilter coverage.
>>>>>>>> ENH: Improve the itkMatrixSelectionImageFilter coverage.
>>>>>>>> ENH: Improve itkTanImageFilter and Adaptor coverage.
>>>>>>>> ENH: Increase itkSqrtImageFilter and Adaptor coverage.
>>>>>>>> ENH: Increase itkTernaryOperatorImageFilter coverage.
>>>>>>>> ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage.
>>>>>>>> STYLE: Improve itkScalarImagekmeansImageFilter style.
>>>>>>>> STYLE: Conform to TEST_SET_GET_VALUE definition.
>>>>>>>> BUG: Fix uninitialized variable due to dynamic analysis defect.
>>>>>>>> BUG: Fix uninitialized variable defect reported by valgrind.
>>>>>>>> ENH: Improve the itkPointSetToPointSetRegistrationTest.
>>>>>>>> ENH: Improve the itkPointSetToImageRegistrationTest.
>>>>>>>> ENH: Increas BinaryMagnitudeImageFilter coverage.
>>>>>>>> STYLE: Remove test name from std output.
>>>>>>>> ENH: Increase MagnitudeImageFilter coverage.
>>>>>>>> BUG: Fix uninitialized variable defect reported by valgrind.
>>>>>>>> BUG: Fix Superclass name in RTTI.
>>>>>>>> STYLE: Improve itkFrustumSpatialFunction style.
>>>>>>>> STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction
>>>>>>>> style.
>>>>>>>> BUG: Fix Superclass template argument list.
>>>>>>>> STYLE: Improve the itkTorusInteriorExteriorSpatialFunction
>>>>>>>> style.
>>>>>>>> STYLE: Improve the itkCheckerBoardImageFilter class style.
>>>>>>>> ENH: Improve the itk::LabelVotingImageFilter coverage.
>>>>>>>> ENH: Improve itkCheckerBoardImageFilter coverage.
>>>>>>>> STYLE: Improve itk::LabelVotingImageFilter style.
>>>>>>>> STYLE: Improve the itkHoughTransform2DCirclesImageFilter
>>>>>>>> style.
>>>>>>>> ENH: Add test for itk::FrustumSpatialFunction class.
>>>>>>>> ENH: Improve itkConnectedThresholdImageFilter coverage.
>>>>>>>> STYLE: Improve itkConnectedThresholdImageFilter style.
>>>>>>>> BUG: Fix FrustumSpatialFunction internal precision conversion.
>>>>>>>> COMP: Fix implicit conversion warning.
>>>>>>>> STYLE: Improve itkThresholdImageFilter style.
>>>>>>>> ENH: Add test for itk::TorusInteriorExteriorSpatialFunction.
>>>>>>>> BUG: Fix Superclass template argument list.
>>>>>>>> ENH: Improve itkUnsharpMaskingImageFilter implementation.
>>>>>>>> ENH: Improve the itkUnsharpMaskingImageFilter coverage.
>>>>>>>> ENH: Fix UnsharpMaskingImageFilter test inconsistencies.
>>>>>>>> BUG: Add missing itkTypeMacro.
>>>>>>>> DOC: Document the member variables.
>>>>>>>> BUG: Fix the itkImageSource RTTI class name,
>>>>>>>> STYLE: Improve itkLabelImageGaussianInterpolateImageFunction
>>>>>>>> style.
>>>>>>>> ENH: Finish itkGaussianInterpolateImageFunction PrintSelf.
>>>>>>>> STYLE: Improve itkLabelOverlapMeasurementImageFilter style.
>>>>>>>>
>>>>>>>> KWSys Robot (6):
>>>>>>>> KWSys 2016-06-30 (96f06c8e)
>>>>>>>> KWSys 2016-10-23 (b630d2f5)
>>>>>>>> KWSys 2016-11-03 (37306a1c)
>>>>>>>> KWSys 2016-11-08 (2b3e2b1c)
>>>>>>>> KWSys 2016-11-09 (18c65411)
>>>>>>>> KWSys 2016-11-21 (cb55cf5a)
>>>>>>>>
>>>>>>>> Maeliss Jallais (1):
>>>>>>>> BUG: Add unsigned and signed short to the wrapping of
>>>>>>>> vnl_matrix
>>>>>>>>
>>>>>>>> Matthew McCormick (85):
>>>>>>>> PERF: Simplify HilbertPath numberOfPathVertices computation.
>>>>>>>> BUG: CID 1355469 NNetClassifierTest4 unintended integer
>>>>>>>> division.
>>>>>>>> BUG: Update Cuberille Remote for version check fix.
>>>>>>>> ENH: Bump ITK version to 4.11.0.
>>>>>>>> BUG: Fix HDF5ImageIO type information.
>>>>>>>> BUG: Fix H5File memory leak in HDF5ImageIO.
>>>>>>>> DOC: Collect Francois Budin's contributions in .mailmap
>>>>>>>> BUG: Limit WRAP_ITK_MODULES when building externally
>>>>>>>> STYLE: Improvements to ResourceProbe report output.
>>>>>>>> ENH: Add a useTabs argument to ResourceProbe::Report.
>>>>>>>> ENH: Add standard error measure to the ResourceProbe
>>>>>>>> ENH: Add itk_python_add_test function.
>>>>>>>> BUG: Remove VNL file from subtree merge.
>>>>>>>> COMP: Fix wrapping with a space in the Python include path
>>>>>>>> BUG: Fix PermuteAxesImageFilter pipeline method visibility
>>>>>>>> BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter
>>>>>>>> BUG: ResampleImageFilter honor isInside output of the
>>>>>>>> transform method
>>>>>>>> COMP: Avoid recursive include of itkMath.h
>>>>>>>> COMP: Fix VXL header installation locations
>>>>>>>> BUG: ClampImageFilterTest for older GCC, InPlaceOn
>>>>>>>> DOC: Add CONTRIBUTING.md file to the top level.
>>>>>>>> COMP: Update VariationalRegistration to address Doxygen
>>>>>>>> warnings
>>>>>>>> BUG: Compiler detections file installed into ITK build tree
>>>>>>>> location
>>>>>>>> COMP: Do not use string(TIMESTAMP.
>>>>>>>> COMP: Remove HDF5 -std=c99 for C++ files
>>>>>>>> BUG: Do not build HDF5 static library with a shared build
>>>>>>>> ENH: Add PerformanceBenchmarking Remote Module
>>>>>>>> COMP: Remove duplicate wrappings for ResampleImageFilter
>>>>>>>> BUG: Put Python test output files in the build tree
>>>>>>>> BUG: Improve HDF5ImageIO::CloseDataSet name
>>>>>>>> COMP: Use add_python_test PythonLazyLoadingImage
>>>>>>>> COMP: Address missing override it itkFactoryTestLib.cxx
>>>>>>>> BUG: Index,Size,Offset constructors present in Python with
>>>>>>>> C++11
>>>>>>>> COMP: Address missing override it itkFactoryTestLib.cxx
>>>>>>>> BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT
>>>>>>>> ENH: Bump SetupForDevelopment version
>>>>>>>> BUG: Add missing ZLib deflate support to HDF5
>>>>>>>> BUG: Address memory leak, remove NumPy build dep in BridgeNumPy
>>>>>>>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory
>>>>>>>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory
>>>>>>>> BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include
>>>>>>>> ITK_WRAP_IMAGE_DIMS
>>>>>>>> BUG: RichardsonLucyDeconvolutionImageFilter with non-null
>>>>>>>> input
>>>>>>>> Image Origin
>>>>>>>> BUG: Fix inconsistent Twister start with Initialize(seed) and
>>>>>>>> SetSeed(seed)
>>>>>>>> BUG: Do not hard code CMake scripts in HDF5
>>>>>>>> COMP: Workaround Emscripten ITKCommon test build failure
>>>>>>>> COMP: Do embed fancy HDF5 libsettings with Emscripten
>>>>>>>> COMP: Add missing H5T_patch_vlen_file declaration
>>>>>>>> ENH: Bump CastXML to 2016-10-11 master.
>>>>>>>> COMP: Workaround Emscripten ITKCommon test build failure
>>>>>>>> BUG: Swap CastXML hashes for Mac OSX and Windows
>>>>>>>> ENH: Sync ExternalData.cmake with upstream CMake 3.6.2
>>>>>>>> COMP: Fix VNL tests when cross-compiling
>>>>>>>> ENH: ExternalData multi-algorithm support
>>>>>>>> ENH: ExternalData support for data.kitware.com
>>>>>>>> BUG: Install missing H5pubconf.h
>>>>>>>> BUG: Use SpacePrecisionType in TileImageFilter
>>>>>>>> BUG: Use internal ExternalData_Add_Target
>>>>>>>> ENH: Run .sha512, .md5 simultaneous modification pre-commit
>>>>>>>> check
>>>>>>>> BUG: Correct CastXML Windows binary
>>>>>>>> BUG: Support non-zero Index in LevelSetNeighborhoodExtractor
>>>>>>>> ENH: Add ArchiveTestingDataOnGirder.py
>>>>>>>> BUG: Correct AtanRegularizationHeavisideStepFunction
>>>>>>>> derivative
>>>>>>>> ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh
>>>>>>>> BUG: Remove extra HessianToObjectness content links
>>>>>>>> ENH: Wrap SpatialFunction float types with ITK_WRAP_float
>>>>>>>> BUG: Bump PerformanceBenchmarking to 2016-11-04
>>>>>>>> BUG: itk_python_expression_add_test too many quotes.
>>>>>>>> ENH: Wrap VectorImage with complex real pixel types
>>>>>>>> ENH: Bump PerformanceBenchmarking to 2016-11-07
>>>>>>>> BUG: Do not assume zero Index in ReinitializeLevelSetImageFilte
>>>>>>>> r
>>>>>>>> ENH: Create itk_module_add_library macro
>>>>>>>> BUG: Update computeCodeCoverageLocally.sh for KWStyle addition
>>>>>>>> COMP: Install a newer version of CMake on CircleCI
>>>>>>>> ENH: Use GitHub Pages as the first ExternalData resource
>>>>>>>> ENH: Add tests to demonstrate OSX dynamic_cast failure
>>>>>>>> BUG: Use random seed with for MersenneTwisterRandomVariateGe
>>>>>>>> nerator.
>>>>>>>> BUG: Enable program global timestamp
>>>>>>>> BUG: Set random number seed in Mattes metric test
>>>>>>>> BUG: Notify builder that ITK_DYNAMIC_LOADING is required with
>>>>>>>> wrapping
>>>>>>>> BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON
>>>>>>>> BUG: Set random number seed mutual information metric tests
>>>>>>>> BUG: Wrap std::vector< itk.Point >
>>>>>>>> BUG: Fix wrapping of LandmarkBasedTransformInitializer
>>>>>>>> BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter
>>>>>>>> DOC: Add Dženan Zukić to .mailmap
>>>>>>>>
>>>>>>>> Max Smolens (4):
>>>>>>>> COMP: CID-1266557 StatisticsLabelMapFilter uninitialized
>>>>>>>> scalar field
>>>>>>>> BUG: CID-1355438 QuadEdgeTest1 resource leaks
>>>>>>>> COMP: CID-1355472 MIRegistrationFunction unused value
>>>>>>>> COMP: Fix link errors for VNL template instantiations on
>>>>>>>> Windows
>>>>>>>>
>>>>>>>> Mayeul Chassagnard (7):
>>>>>>>> BUG: Test added and error fixed in HDF5ImageIO
>>>>>>>> ENH: Update add_library TO itk_module_add_library
>>>>>>>> COMP: Set Policy CMP0023 target_link_libraries for
>>>>>>>> Modules/ThirdParty/VNLI...
>>>>>>>> BUG: Add ITK_TEMPLATE_EXPORT to template classes
>>>>>>>> BUG: Fix errors linked to dyn_cast merge
>>>>>>>> BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for
>>>>>>>> classes
>>>>>>>> BUG: dash3win7 dashboard build error unresolved external symbol
>>>>>>>>
>>>>>>>> Michka Popoff (3):
>>>>>>>> ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0
>>>>>>>> ENH: Update igenerator.py for pygccxml v1.8.0
>>>>>>>> COMP: Use pygccxml's public API for apply definitions
>>>>>>>>
>>>>>>>> Pierre Barbier de Reuille (2):
>>>>>>>> COMP: Fix function naming error when using FFTWD
>>>>>>>> COMP: Fix function naming error when using FFTWD
>>>>>>>>
>>>>>>>> Sean McBride (1):
>>>>>>>> COMP: Bypass HDF5 bugs under TSan
>>>>>>>>
>>>>>>>> Simon Rit (2):
>>>>>>>> COMP: remove C++11 compiler warning for CUDA compilations
>>>>>>>> COMP: remove C++11 compiler warning for CUDA compilations
>>>>>>>>
>>>>>>>> Somesh Kashyap (2):
>>>>>>>> BUG: Override TransformCategoryType for
>>>>>>>> AzimuthElevationToCartesianTransform
>>>>>>>> BUG: -Added test case for itkAzimuthElevationToCartesian
>>>>>>>> Transform
>>>>>>>>
>>>>>>>> Sumedha Singla (1):
>>>>>>>> ENH: Updated the git tag for ITK-Minimal-Path-Extraction
>>>>>>>> remote module
>>>>>>>>
>>>>>>>> Taylor Braun-Jones (4):
>>>>>>>> COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS
>>>>>>>> is enabled
>>>>>>>> COMP: Fix truncation from double to float warning
>>>>>>>> DOC: Fix incorrect itkFactorylessNewMacro documentation
>>>>>>>> COMP: Only include the headers for required OpenCV modules
>>>>>>>>
>>>>>>>> Thien Nguyen (1):
>>>>>>>> PERF: SmapsFileParser unnecessary dynamic_cast
>>>>>>>>
>>>>>>>> VXL Maintainers (4):
>>>>>>>> VNL 2016-05-15 (14f97ab4)
>>>>>>>> VNL 2016-06-22 (23a93adb)
>>>>>>>> VNL 2016-06-29 (d62a2d70)
>>>>>>>> VNL 2016-07-06 (acfa62cc)
>>>>>>>>
>>>>>>>> Vladimir S. FONOV (1):
>>>>>>>> COMP: Build against GCC 5.3.1
>>>>>>>>
>>>>>>>> Zach Williamson (2):
>>>>>>>> ENH: Update Remote Module Tags
>>>>>>>> BUG: Fix Python Wrappings in C++11
>>>>>>>>
>>>>>>>> Ziv Yaniv (1):
>>>>>>>> BUG: Metric sampling percentage accepted values outside (0.0,
>>>>>>>> 1.0].
>>>>>>>>
>>>>>>>>
>>>>>>>> ITK Software Guide Changes
>>>>>>>> ----------------------------------------
>>>>>>>>
>>>>>>>> Matt McCormick (8):
>>>>>>>> DOC: Move the location for obtaining the software
>>>>>>>> DOC: Remove reference to ITKApps
>>>>>>>> ENH: Bump ITK ExternalProject version to 2016-11-02 master
>>>>>>>> DOC: Document the ITK module registry
>>>>>>>> ENH: Bump ITK ExternalProject version to v4.11rc01 master
>>>>>>>> DOC: Update CMake hyperlinks
>>>>>>>> DOC: Update minimum required CMake version to 2.8.9
>>>>>>>> DOC: Add section on static and shared libraries.
>>>>>>>>
>>>>>>>>
>>>>>>>> ITK Sphinx Examples Changes
>>>>>>>> -------------------------------------------
>>>>>>>>
>>>>>>>> Matt McCormick (6):
>>>>>>>> BUG: Use GDCM ITK module name
>>>>>>>> ENH: Rename ReadDICOMSeriesAndWrite3DImage
>>>>>>>> BUG: Add tests for ReadDICOMSeriesAndWrite3DImage
>>>>>>>> ENH: Bump ITK Superbuild version to 2016-09-20 master
>>>>>>>> ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage
>>>>>>>> ENH: Add Python version of CreateAnRGBImage
>>>>>>>>
>>>>>>>> Michka Popoff (5):
>>>>>>>> ENH: Use same Python interpreter as ITK for wrapping tests
>>>>>>>> BUG: Fix ResampleAnImage example (Python3)
>>>>>>>> ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRe
>>>>>>>> gionOfAnImage
>>>>>>>> ENH: Add 7 Python examples to Core/Common
>>>>>>>> ENH: Add BoundingBoxOfAPointSet Python example
>>>>>>>>
>>>>>>>>
>>>>>>>> -----------------------------------------------------
>>>>>>>> Errors or omissions? Please fix them here:
>>>>>>>>
>>>>>>>>
>>>>>>>> https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFr
>>>>>>>> A54KRvf__4oeT0ymzZg/edit
>>>>>>>> _______________________________________________
>>>>>>>> Powered by www.kitware.com
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>> http://kitware.com/products/protraining.php
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> _____________________________________
>>>>>>> Powered by www.kitware.com
>>>>>>>
>>>>>>> Visit other Kitware open-source projects at
>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>
>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>>
>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>
>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
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