From bill.lorensen at gmail.com Mon Jan 2 12:41:24 2017 From: bill.lorensen at gmail.com (Bill Lorensen) Date: Mon, 2 Jan 2017 12:41:24 -0500 Subject: [ITK-dev] Remote module AnisotropicDiffusionLBR compile error Message-ID: This commit causes a compile error for the AnisotropicDiffusionLBR remote module http://review.source.kitware.com/#/c/21818/ It has been failing to compile since it was merged on December 5. Bill -- Unpaid intern in BillsBasement at noware dot com From bill.lorensen at gmail.com Wed Jan 4 13:03:35 2017 From: bill.lorensen at gmail.com (Bill Lorensen) Date: Wed, 4 Jan 2017 13:03:35 -0500 Subject: [ITK-dev] Remote module AnisotropicDiffusionLBR compile error In-Reply-To: References: Message-ID: Now that the remote module has been fixed, someone needs to update AnisotropicDiffusionLBR.remote.cmake to reference the repaired commit. On Mon, Jan 2, 2017 at 12:41 PM, Bill Lorensen wrote: > This commit causes a compile error for the AnisotropicDiffusionLBR remote module > http://review.source.kitware.com/#/c/21818/ > > It has been failing to compile since it was merged on December 5. > > Bill > > -- > Unpaid intern in BillsBasement at noware dot com -- Unpaid intern in BillsBasement at noware dot com From dzenanz at gmail.com Wed Jan 4 14:00:51 2017 From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=) Date: Wed, 4 Jan 2017 14:00:51 -0500 Subject: [ITK-dev] Too fast? Message-ID: Does somebody know why is this test now failing? https://open.cdash.org/testDetails.php?test=513022422&build=4708890 -------------- next part -------------- An HTML attachment was scrubbed... URL: From dzenanz at gmail.com Wed Jan 4 14:03:44 2017 From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=) Date: Wed, 4 Jan 2017 14:03:44 -0500 Subject: [ITK-dev] Remote module AnisotropicDiffusionLBR compile error In-Reply-To: References: Message-ID: On it. On Wed, Jan 4, 2017 at 1:03 PM, Bill Lorensen wrote: > Now that the remote module has been fixed, someone needs to update > AnisotropicDiffusionLBR.remote.cmake to reference the repaired commit. > > > On Mon, Jan 2, 2017 at 12:41 PM, Bill Lorensen > wrote: > > This commit causes a compile error for the AnisotropicDiffusionLBR > remote module > > http://review.source.kitware.com/#/c/21818/ > > > > It has been failing to compile since it was merged on December 5. > > > > Bill > > > > -- > > Unpaid intern in BillsBasement at noware dot com > > > > -- > Unpaid intern in BillsBasement at noware dot com > _______________________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Kitware offers ITK Training Courses, for more information visit: > http://kitware.com/products/protraining.php > > Please keep messages on-topic and check the ITK FAQ at: > http://www.itk.org/Wiki/ITK_FAQ > > Follow this link to subscribe/unsubscribe: > http://public.kitware.com/mailman/listinfo/insight-developers > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dzenanz at gmail.com Wed Jan 4 14:07:20 2017 From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=) Date: Wed, 4 Jan 2017 14:07:20 -0500 Subject: [ITK-dev] Remote module AnisotropicDiffusionLBR compile error In-Reply-To: References: Message-ID: ?Oh, that was already done by Francois 2 days ago.? On Wed, Jan 4, 2017 at 2:03 PM, D?enan Zuki? wrote: > On it. > > On Wed, Jan 4, 2017 at 1:03 PM, Bill Lorensen > wrote: > >> Now that the remote module has been fixed, someone needs to update >> AnisotropicDiffusionLBR.remote.cmake to reference the repaired commit. >> >> >> On Mon, Jan 2, 2017 at 12:41 PM, Bill Lorensen >> wrote: >> > This commit causes a compile error for the AnisotropicDiffusionLBR >> remote module >> > http://review.source.kitware.com/#/c/21818/ >> > >> > It has been failing to compile since it was merged on December 5. >> > >> > Bill >> > >> > -- >> > Unpaid intern in BillsBasement at noware dot com >> >> >> >> -- >> Unpaid intern in BillsBasement at noware dot com >> _______________________________________________ >> Powered by www.kitware.com >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/opensource/opensource.html >> >> Kitware offers ITK Training Courses, for more information visit: >> http://kitware.com/products/protraining.php >> >> Please keep messages on-topic and check the ITK FAQ at: >> http://www.itk.org/Wiki/ITK_FAQ >> >> Follow this link to subscribe/unsubscribe: >> http://public.kitware.com/mailman/listinfo/insight-developers >> > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From taylor at braun-jones.org Mon Jan 9 11:07:56 2017 From: taylor at braun-jones.org (Taylor Braun-Jones) Date: Mon, 9 Jan 2017 11:07:56 -0500 Subject: [ITK-dev] ITK 4.11 release schedule Message-ID: Hi all, Looks like this page is out of date: https://itk.org/Wiki/ITK/Release_Schedule Is there a new plan (or tentative plan) for the v4.11 release that the page can be updated with? Thanks, Taylor -------------- next part -------------- An HTML attachment was scrubbed... URL: From matt.mccormick at kitware.com Mon Jan 9 11:13:31 2017 From: matt.mccormick at kitware.com (Matt McCormick) Date: Mon, 9 Jan 2017 11:13:31 -0500 Subject: [ITK-dev] ITK 4.11 release schedule In-Reply-To: References: Message-ID: Hi Taylor, I updated the wiki page. We will be tagging the first 4.11 RC later today, and the final release is scheduled for January 23rd. We took the time required to address the dynamic_cast on MacOSX issue. Thanks, Matt On Mon, Jan 9, 2017 at 11:07 AM, Taylor Braun-Jones wrote: > Hi all, > > Looks like this page is out of date: > > https://itk.org/Wiki/ITK/Release_Schedule > > Is there a new plan (or tentative plan) for the v4.11 release that the > page can be updated with? > > Thanks, > Taylor > > _______________________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Kitware offers ITK Training Courses, for more information visit: > http://kitware.com/products/protraining.php > > Please keep messages on-topic and check the ITK FAQ at: > http://www.itk.org/Wiki/ITK_FAQ > > Follow this link to subscribe/unsubscribe: > http://public.kitware.com/mailman/listinfo/insight-developers > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dzenanz at gmail.com Mon Jan 9 18:56:49 2017 From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=) Date: Mon, 9 Jan 2017 18:56:49 -0500 Subject: [ITK-dev] vcpkg Message-ID: Hi guys, vcpkg looks like a good effort for easing library installation for usage in Visual Studio. Should we join the effort by adding ITK and VTK? Has anyone tried/started doing this? Regards, D?enan -------------- next part -------------- An HTML attachment was scrubbed... URL: From matt.mccormick at kitware.com Mon Jan 9 19:22:00 2017 From: matt.mccormick at kitware.com (Matt McCormick) Date: Mon, 9 Jan 2017 19:22:00 -0500 Subject: [ITK-dev] Workaround for dynamic_cast on Mac OSX In-Reply-To: References: <2702DADA-25CD-42D6-9CCE-BA306F400B1C@uiowa.edu> Message-ID: On Mon, Nov 14, 2016 at 6:36 PM, Matt McCormick wrote: > On Mon, Nov 14, 2016 at 2:53 PM, Isaiah Norton > wrote: > > Hi Matt, > > > >> > >> Here are the tests: > >> http://review.source.kitware.com/#/c/21755/ > >> > >> where reasonable export specification is added in both ITK and the > >> client libraries. But, dynamic_cast fails on OSX: > > > We will test further with Python wrapping for OSX with the > ITKCommon_TEMPLATE_EXPORT approach, then investigate > -fvisibility-ms-compat if that does not prove viable. > To follow-up, after further investigation, we used the equivalent of ITKCommon_TEMPLATE_EXPORT but called it ITK_TEMPLATE_EXPORT so the same macro can be used across multiple modules. This macro is defined to __attribute__ ((visibility ("default"))) on OSX. As noted here [1], this is the same approach taken by libstdc++ for the templated STL containers: "Part of the std:: (exceptions typeinfo symbols) must be visible-by-default for proper throw-catch/dynamic_cast working across shared libs boundaries." This is available in ITK 4.11. Thanks, Matt [1] https://gcc.gnu.org/bugzilla/show_bug.cgi?id=50348 -------------- next part -------------- An HTML attachment was scrubbed... URL: From matt.mccormick at kitware.com Mon Jan 9 19:36:07 2017 From: matt.mccormick at kitware.com (Matt McCormick) Date: Mon, 9 Jan 2017 19:36:07 -0500 Subject: [ITK-dev] ITK+static+wrapping [ref: 21857 "Enable singleton program global timestamp"] In-Reply-To: References: Message-ID: Hi Isaiah, Yes, good point. Furthermore, if there is any other binary (non-Python extension), they will also run into the timestamp / unique singleton issue. To catch all cases, we can suggest that whenever using multiple binaries that link to ITK, shared libraries should be used. Please review this addition to the documentation: http://review.source.kitware.com/#/c/21934/ Since we don't know how folks will be using ITK when they are configuring ITK, it is difficult to provide a warning there that is not confusing. I think that if the developer is sophisticated enough to embed Python and pass objects into that embedded Python, they will be using shared libraries. The default static libraries is the easiest configuration for beginners building stand-alone executables or Python Windows users that do not want / need to tweak the PATH to find .dlls. Thanks, Matt On Thu, Dec 22, 2016 at 12:55 PM, Isaiah Norton wrote: > Hi Matt, > > There is one potential technical issue with the scheme added by 21857. I > think that users who embed Python in a native application, with the app > statically linked to ITK, will need to manually ensure that the > application-side timestamp is initialized to point to the variable from > _ITKCommonPython. Otherwise, any objects initialized from application-side > ITK code would face the same desynchronization issue. Also, as mentioned in > the comments on the merge request, fully supporting the > (ITK_WRAP_PYTHON=ON, BUILD_SHARED_LIBS=OFF) multi-object configuration will > require moving other globals to the new Python side-loaded singleton system. > > Given the above, perhaps that build configuration should be an error by > default, for now (with override available), so people don't use it > inadvertently? The problems caused can be difficult to debug. > > Best, > Isaiah > > > On Sat, Dec 17, 2016 at 10:41 AM, Matt McCormick < > matt.mccormick at kitware.com> wrote: > >> Hi Isaiah, >> >> Here is some more information and background. >> >> >> > What is the rationale behind creating so many separate, >> statically-linked >> > Python modules? (78 `_ITK*Python.so` files on my machine). Creating a >> single >> > bundle instead should resolve the original issue, and might also reduce >> the >> > size of the final library [3]. >> >> For background, the GlobalTimeStamp, is a very important variable in >> ITK (and VTK). This is an atomic integer that gets incremented when >> any itk::Object (most classes in ITK) is "Modified", i.e. changed to >> note that it should be updated in a processing pipeline. So, almost >> all ITK-based code needs it, and it needs to be global across the >> entire program. >> >> The GlobalTimeStamp lives in and is used my itk::TimeStamp.cxx, and it >> is incremented on every call to ::Modified(). The itk::TimeStamp class >> is linked into libITKCommon. >> >> When ITK is built with shared libraries, libITKCommon is shared, and >> everything shares the GlobalTimeStamp. When ITK is built with static >> libraries, every binary that links in libITKCommon will get its own >> GlobalTimeStamp. >> >> Unfortunately, a shared libITKCommon is not always possible. For the >> official Python packaging format, wheels, native libraries are not yet >> officially supported [1]. >> >> The advantages of not linking everything into one, giant, monolithic >> `_ITK*Python.so` are that 1) we can lazily load only the parts of the >> library that we need, and 2) the brilliant ITK community members can >> extend ITK to create their own ITK Python module. For example, see the >> awesome ITKMinimalPathExtraction [2] or ITKIsotropicWavelets [3] >> modules. >> >> While I also investigated, for example, using CMake object libraries >> to make itk::TimeStamp an exported symbol in _ITKCommonPython.so and >> only linked there [4], this is a more complex build configuration. >> Additionally, according to the Python documentation, exporting extra >> symbols in a CPython extension module is officially not supported [5]. >> In practice, I have found that extra symbols can segfault the process >> on module import with Python 3.5 on Windows. So, the sharing is done >> the officially supported way, via PyCapsule. >> >> >> > Additionally, I am wondering if cross-module `dynamic_cast` works >> correctly >> > in the current situation -- because the typeinfos in each static module >> .so >> > have different addresses [4]. (I'm not sure how to create a situation to >> > test this from Python) >> >> Yes, since the Python wrapping covers the entire toolkit, it is an >> excellent stress test for the dynamic_cast issue. When we developed >> the dynamic_cast patch, we used Python wrapping with static libraries >> and experimentally enabled hidden symbols by default [6]. Without the >> dynamic_cast fix, the Python tests failed, and with the fix, they >> pass. It turns out that we missed some mark-up on a few classes as >> indicated by warnings in the Python wrapping and non-wrapping test >> failures, but we are working on resolving those now. >> >> Thanks, >> Matt >> >> >> [1] https://mail.python.org/pipermail/wheel-builders/2016-April/ >> 000090.html >> >> [2] https://github.com/InsightSoftwareConsortium/ITKMinimalPathExtraction >> >> [3] https://github.com/phcerdan/ITKIsotropicWavelets >> >> [4] https://github.com/thewtex/ITK/commits/thewtex-PythonModifiedTime55 >> >> [5] https://docs.python.org/3.5/extending/extending.html#providi >> ng-a-c-api-for-an-extension-module >> >> [6] http://review.source.kitware.com/#/c/21766/ >> > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From matt.mccormick at kitware.com Mon Jan 9 20:08:39 2017 From: matt.mccormick at kitware.com (Matt McCormick) Date: Mon, 9 Jan 2017 20:08:39 -0500 Subject: [ITK-dev] [ANN] ITK 4.11 Release Candidate 1 is ready for testing! Message-ID: On behalf of the Insight Toolkit community, we are proud to announce that ITK 4.11 release candidate 1 has been tagged and is available for testing! Please take this opportunity to test the new features in the release candidate. To obtain the source code, git clone https://itk.org/ITK.git cd ITK git checkout -q --detach v4.11rc01 For more details, please see the Git documentation [1]. A few selected highlights for this release: - Remote Modules were added to: perturb mesh vertices with additive gaussian noise, accurately benchmark computational performance, perform principal components analysis of scalar, vector, and mesh vertex data, create a run-length encoded memory compression scheme for itk::Image, run N-D morphological contour interpolation, interpolate multi-label images, iterate over multiple images simultaneously, and compute inverse displacement fields. - NumPy bridge support is now enabled by default with NumPy array views of multi-component images and VNL vectors and matrices. - Internal HDF5 was updated to the latest upstream version along with a number of other third-party libraries. This release introduces a new template class export specification macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated classes to address failing dynamic_cast's and exception catching across binaries on Mac OSX. Bugs were addressed and improvements were made to how the pseudo-random number generator is used. Tests that rely on the random number generator should explicitly set the global seed at start: itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance()->SetSeed( 121212 ); To improve randomness, new instances of the generator start from a different seed; some minor differences in the output of algorithms that uses the generator, like mutual information metrics, should be expected. Please test the release candidate and share your experiences on the mailing list, issue tracker, and Gerrit Code Review. An Experimental build, which demonstrates how the test suite performs on your local build system, can be submitted to the dashboard [2] with: mkdir ../ITK-build cd ../ITK-build cmake ../ITK ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit Visual Studio builds must also add ?-C Release? to the ctest command. Notify the mailing list if there are any unexpected failures. Testing your own applications against the RC is also appreciated. Congratulations to the 31 contributors to this release. We would especially like to recognize the new contributors: Hastings Greer, Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss Jallais. The 4.11.0 final release is scheduled for January 23rd. [1] http://www.itk.org/Wiki/ITK/Git [2] http://open.cdash.org/index.php?project=Insight New Features ------------ * Wrapping Improvements - Python GetArrayFromImage() and GetImageFromArray() from ITKBridgeNumPy are directly accessible from the Python itk namespace. - The itk package loads much faster: individual modules are loaded only when required. - Conversion of ITK images from and to NumPy array using Bridge NumPy supports RGB, RGBA, and Vector images. - VNL vectors and VNL matrices can be converted from and to NumPy objects with respectively the new couple of functions GetArrayFromVnlVector()/GetVnlVectorFromArray() and GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() - The global timestamp is used across all ITK Python modules when built statically - Wrap additional classes such as KernelFunctionBase - itk_python_add_test CMake function added for Python script testing in ITK modules * New Remote Modules - DVMeshNoise - Perturbing mesh vertices with additive gaussian noise - http://hdl.handle.net/10380/3567 - PerformanceBenchmarking - Accurate benchmarking of computational performance - http://hdl.handle.net/10380/3557 - PrincipalComponentsAnalysis - Principal components analysis of scalar, vector, and mesh vertex data - http://hdl.handle.net/10380/3386 - RLEImage - Run-length encoded memory compression scheme for itk::Image - http://hdl.handle.net/10380/3562 - MorphologicalContourInterpolation - N-D morphological contour interpolation - http://hdl.handle.net/10380/3563 - GenericLabelInterpolator - A generic interpolator for multi-label images - http://hdl.handle.net/10380/3506 - MultipleImageIterator - Iterate over multiple images simultaneously - http://hdl.handle.net/10380/3455 - FixedPointInverseDisplacementField - Computes inverse displacement field - http://hdl.handle.net/10380/3222 * Core Improvements - New ITK_TEMPLATE_EXPORT for templated classes resolves cross-binary dynamic_cast on Mac OSX - New MersenneTwisterRandomVariateGenerator instances are initialized with different seeds - Use compiler feature detection in CMake for C++11 features, etc. - New CMake macro itk_module_add_library for creating libraries in ITK modules - Improved support for ccache and distcc with CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) - Support for .sha512 ExternalData content links - GitHub Pages and data.kitware.com ExternalData repositories added - GPGPU system support for C++11 - Support of new compilers: Visual Studio 15 and XCode 8.2.1 (clang-800.0.42.1) * Filtering Improvements - HessianToObjectnessMeasure moved out of the ITKReview module - New UnsharpMaskImageFilter for image edge enhancement * IO Improvements - TransformFactory class has been moved to a separate module - Spline order added to BSplineTransform identifier - Improved NIFTI orientation support * Documentation Improvements - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples * Third Party Library Updates - pygccxml updated to v1.8.0 - VNL updated to latest upstream (2016.07.06) - SWIG updated to v3.0.11 - KWSys updated to latest upstream (2016.11.21) - HDF5 updated to v1.8.17 - SCIFIO updated to latest upstream (2016.12.01) - DCMTK updated to 3.6.1_20121012 - CastXML to latest upstream (2016.01.28) * Improved Code Coverage -- we are at 85.44%! - Jon Haitz-Legarreta's extensive code coverage improvements - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ * *Lots* of important bug fixes * And much more! See details in the log below. Changes from v4.10.0 to v4.11rc01 ------------------------------------------------ Bill Lorensen (4): COMP: Restore support for clang 3.0 compiler COMP: Consistent use of ModifiedTimeType ENH: Bump WikiExamples remote module version ENH: Bump WikiExamples version Bradley Lowekamp (57): ENH: Add registered TrasformIO's to exception ENH: Use template or constant for loop stop condition ENH: Updating SWIG version to 3.0.9 COMP: Address VS9 ambiguous std::abs call in Haung calculator COMP: Fix undefined NumericTraits::Zero and One errors with mingw64 BUG: Fix segfault if ~CleanUpObjectFactory called multiple times BUG: Address itkHDF5ImageIO test failures for mingw64 BUG: demonstrate dynamic_cast failure when reading transforms BUG: Address itkHDF5ImageIO test failures for mingw64 ENH: Updating SWIG version to 3.0.10 ENH: Enable CMP0063 New behavior COMP: Enable hidden visibility property with vxl static libraries COMP: Enable hidden visibility property with HDF5 static libraries COMP: Enable hidden visibility property with HDF5 static libraries BUG: Match Add2 function to AddImageFilter documentation ENH: Improve support for std::complex with PowImageFilter ENH: Explicitly mark required files for dependent tests COMP: Bypass XCode 7.3,8 internal compilation error COMP: Address CMake configuration error with itkJPEG2000Test03 property BUG: Correct test's REQUIRED_FILES to only the input. ENH: move HessianToObjectnessMeasure filter out of Review ENH: Separate TransformFactory class into separate module DOC: Add links between similar label to rgb filters ENH: Separate data from function calls COMP: Fix changed Graft method ENH: Reduce template dependencies on CalculateRotationMatrix ENH: Add Functor Accessors to LabelMapToRGB filter BUG: Enable VirtualDomain and FixedTransform in RegMethv4 BUG: Use BSpline Order 3 for 2D in transform factory. ENH: Add spline order to BSplineTransform's string id ENH: Adding initial CircleCi configuration file COMP: Fix float to unsigned integer conversion warnings BUG: Include installed modules in ITK_MODULES_ENABLED COMP: Address CMake error that ITKGPUCommon is not in export COMP: Address wrong library types with VS and shared libraries BUG: Ensure CreateImageIO is concurrent thread safe ENH: Mark HDF5 CMake options as internal COMP: Add template export declaration for ParametricPath COMP: Correct TEMPLATE_EXPLICIT definition in Path module ENH: Factor out common code in the TrasformFactoryBase registration ENH: Add CMake variable for max transform dimension, defaults 4 ENH: Create CMake module to check for private RTTI compatibility ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT BUG: Add explicit instantiate for ObjectToObjectOptimizerBase COMP: Use add_definitions for CMake 2.8.9 compatibility COMP: Add warning suppression for distcc warning ENH: Explicitly instantiate the optimizer base over float BUG: Use IsLinear to check if transform is "affine" ENH: Remove unneeded includes of random iterator header ENH: Improve thread-safety for Generator, and unique New sequence ENH: Do not use global random generator BUG: Update v3 registration metrics to use local seed ENH: Prefer setting local seed over global in tests. ENH: Update SWIG to latest 3.0.11 release BUG: relax testing parameters for v3 translation registration BUG: Restore baseline for debug registration Caspar Goch (2): BUG: Use printable type for RGBA pixel ostream for ITK-3501 STYLE: Remove extra space for ITK-3501 Christina Rossmanith (1): DOC: Added more details to the class Doxygen documentation. Davis Vigneault (2): COMP: VCL_DEFINE_SPECIALIZATION not defined ENH: Add remote module DVMeshNoise D?enan Zuki? (27): BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) ENH: Adding MultipleImageIterator as a remote module COMP: enables TBB 4.4 back-end for VTK7's SMP COMP: enabling position independent code flag for FFTW ENH: adding configuration file for code reformatting tool clang-format ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 COMP: Fixing -fPIC flag passing with Ninja build system ENH: Adding RLEImage as a remote module ENH: Updating uncrustify configuration to current git version STYLE: better compliance with ITK style STYLE: A new option in uncrustify, updating the config file accordingly ENH: Adding MorphologicalContourInterpolation as a remote module ENH: improving documentation BUG: fixing buffer growing endlessly, as reported by Timothee Evain BUG: fixing buffer growing endlessly, as reported by Timothee Evain STYLE: default uncrustify configuration file is less aggressive COMP: Fixing warning COMP: VS15 compiler fix BUG: casting -9 to unsigned produced unwanted result BUG: Ensuring consistency between debug and release COMP: Updating LesionSizingToolkit after some recent compile fixes COMP: respect option METAIO_USE_NAMESPACE ENH: updating version of AnisotropicDiffusionLBR ENH: adding UnsharpMaskingImageFilter COMP: explicitly cast to output type BUG: double call to update would cause empty output image ENH: Updating RLEImage remote module. Change-log: Eugene Prilepin (4): ENH: Add the "ITK_USE_GPU" to ITK Config BUG: Fix API for set/get "LaplacianImageFilter" object ENH: Add support of images types with the 'CovariantVector' pixel type ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap Francois Budin (52): ENH: Adding GetArrayFromImage in python itk namespace ENH: Adding GetImageFromArray in python itk namespace ENH: *_WRAP_* variable per external module BUG: ImportImageFilter not responsible of memory management ENH: New remote module GenericLabelInterpolator DOC: SetNumberOfOutputs had wrong comment BUG: lazyAttributes dictionary keys could be over-ridden BUG: lazyAttributes dictionary keys could be over-ridden BUG: Fix recent update of HDF5 (1.8.17) ENH: Update SCIFIO to latest version on 08/23/2016 ENH: Addition of the remote module FixedPointInverseDisplacementField ENH: Update SCIFIO to latest version on 08/29/2016 BUG: Path to commit was relative instead of absolute ENH: Path to SetupForDevelopment is relative, not absolute BUG: LSMImageIO write function was not checking image dimension BUG: LSMImageIO was not checking correctly image dimension BUG: Missing associated test data BUG: Missing associated test data ENH: Bump CMakeLists.txt version to 4.10.1. BUG: Quotes are not escaped in configured cmake file ENH: Improving API of Graft() in itk::Image ENH: Updating ITKGenericLabelInterpolator remote module ENH: Update ITKIOTransformDCMTK remote module BUG: Factory registration should depend on ITK_BUILD_SHARED COMP: Updating DCMTK compilation for Ninja ENH: Update version of DCMTK to 3.6.1_20121012 ENH: Update SCIFIO to latest version on 10/25/2016 BUG: Swig and PCRE do not support space in installation paths BUG: exit() call from within piped commands was not exiting the script BUG: Typo in folder creation command ENH: Only display message for transform registered multiple times in debug ENH: Image spacing must be positive BUG: Supported extensions by PNG IO were not added in constructor. DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. ENH: Update SCIFIO to lastest (2016.12.01) ENH: FixedPointInverseDisplacementField moved to InsightSoftwareConsortium COMP: Remove compilation warnings ENH: Improved support of ccache and distcc BUG: GPUImage regression due to API change. ENH: Update Bridge Numpy (2016.12.05) ENH: Update VariationalRegistration to remove warnings during compilation ENH: FindPythonLibs does not support both debug and release python libraries ENH: Update VariationalRegistration BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of itk::ImageBase BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper BUG: Missing ITK_TEMPLATE_EXPORT in templated class BUG: Remove linkage warnings on MacOS BUG: HDF5 CMake installation directory variable had not been updated BUG: Missing include header in AnisotropicDiffusionBLR remote module hxx files COMP: Silencing unused variable warning in itkTimeStamp STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt COMP: OS*Barrier functions are deprecated on MacOS 10.12 GCC-XML Upstream (1): ENH: pygccxml v1.8.0 (reduced) Gert Wollny (1): BUG: Relax vnl_complex floating point comparisons for i386 Gilles Filippini (1): BUG: Use NATIVE_HBOOL for encoding HDF5 types. HDF Group (1): ENH: hdf5 1.8.17-r30218 (reduced) Hans Johnson (23): COMP: Use cmake WriteCompilerDetectionHeader ENH: Use itk_compiler_detection versions COMP: Need ITK_NOEXCEPT_OR_THROW macro. COMP: Provide consistent granular C++11 support STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT STYLE: Prefer to use consistent definitions COMP: Improve robustness of identifying the compiler standard used BUG: try_compile for AlignAs were always failing STYLE: Provide a well documented macro for repeated code STYLE: Delete functions in consistent way COMP: GPU baseclass ivars need to be protected COMP: Remove unnecessary circular dependancy COMP: Add long long usage for HDF5 COMP: Add long long usage for HDF5 STYLE: Prefer static small array to dynamic array BUG: Confusing interface for FFTW wisdom files STYLE: Output dimension from OutputImageType STYLE: Code review style cleanups STYLE: Prefer to use ITK AssertOrThrow macros ENH: Add OverrideBoundaryCondition logic ENH: Provide mechanism for enhanced NIFTI support BUG: Use NIFTI sform/qform conventions correctly ENH: Remove ambiguity about sform/qform Hastings Greer (8): BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically BUG: make itkTriangleHelper instantiable to ease wrapping BUG: remove lsqr because of license issues ITK 1160 BUG: make itkTriangleHelper instantiable to ease wrapping BUG: initialize X to zero in lsmr Solve BUG: Labled Point Set Registration: test multiple labels BUG: Fix python wrapping of Cuberille remote module BUG: Add test demonstrating Python global timestamp issue Jean-Christophe Fillion-Robin (5): STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393 STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 STYLE: Update MeshIO factories to use RegisterFactoryInternal. See #3393 STYLE: MeshIO: Move MeshFileWriterException into its own file. See #3393 STYLE: MeshIO: Remove unused include from headers. See #3393 Johan Andruejol (3): ENH: Add missing itkKernelFunctionBase wrapping ENH: Add PrincipalComponentsAnalysis remote module COMP: Override cannot be used with inline Jon Haitz Legarreta (216): ENH: Improve itkFlatStructutingElement coverage. ENH: Improve itkPathToImageFilter class coverage. ENH: Improve itkIsolatedWatershedImageFilter coverage. ENH: Improve itkLogSigmoidTransferFunction coverage. STYLE: Improve itkBSplineTransform doc style. ENH: Improve GaborKernelFunctionCoverage. PERF: Remove duplicate itkMath include STYLE: Move the PrintSelf method to the end STYLE: Improve the itkScalarToRGBColormapImageFilter style. STYLE: Delete duplicate method documentation STYLE: Remove method documentation from implementation file STYLE: Improve GACLevelSet classes' style STYLE: Improve test style ENH: Improve itkGaussianDerivativeImageFilter coverage. ENH: Improve the itkScalarToRGBColormapImageFilter coverage STYLE: Improve itkScalarToRGBColormap test style ENH: Improve GACLSImageFilter classes' coverage STYLE: Improve comment style in GACLS tests ENH: Improve itkImportImageFilter coverage ENH: Improve itkVideoFileReader coverage ENH: Improve itkVideoFileWriter coverage STYLE: Improve the itkVideoFileWriter style. STYLE: Imrpove itkVideoFileReader style. ENH: Improve the itkBSplineControlPointImageFunction coverage STYLE: Improve the itkIntensityWindowingImageFilter style STYLE: Improve the itkIntensityWindowingImageFilter test style ENH: Improve ImageToSpatialObjectRegistrationMethod coverage STYLE: Improve test style ENH: Improve MaskNeighborhoodOperatorImageFilter coverage ENH: Improve itkMeshFileWriter coverage ENH: Improve RescaleIntensityImageFilter coverage. ENH: Improve itkClampImageFilter coverage. BUG: Fix ivar type casting in PrintSelf. STYLE: Improve MRIBiasFieldCorrectionFilter style. ENH: Improve MRIBiasFieldCorrectionFilter coverage. ENH: Improve itkIntensityWindowingImageFilter coverage BUG: Fix Run-time type information in CSV module classes. ENH: Improve the itkHistogram class code coverage. DOC: Fix documentation typo. STYLE: Improve the ImproveRescaleIntensityImageFilter style. PERF: Make the itkVideoFileReader ivars private PERF: Make itkVideoFileWriter ivars private ENH: Improve coverage for itk::OrientImageFilter. STYLE: Improve itk::OrientImageFilter class style. ENH: Improve itkCSVNumericObjectFileWriter coverage. ENH: Add missing standard class typdefs. ENH: Improve itkVoronoiSegmentationImageFilter coverage. ENH: Improve itkVoronoiSegmentationImageFilter style. STYLE: Improve the MalahanobisDistanceThresholdImageFunction style. ENH: Improve coverage for itkMalahanobisDistanceThreshold. ENH: Improve itk::MinimumMaximumImageCalculator coverage. ENH: Improve itkMinimumMaximumImageCalculator style. BUG: Fix type mismatch in test. STYLE: Improve itkPolylineMaskImagefilter style. ENH: Improve itkPolylineMaskImageFilter coverage. ENH: Improve itkFileListVideoStyle. ENH: Improve itkLandmarkBasedTransformInitializer coverage. ENH: Add baseline image to itkPolylineMaskImageFilter test. ENH: Improve coverage for itkBSplineTransformInitializer. STYLE: Improve itkBSplineTransformInitializer doc style. ENH: Enhance itkBSplineTransformInitializer implementation. DOC: Fix typo in method documentation. ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. STYLE: Improve the itkSimpleContourExtractorImageFilter style. ENH: Exercise the class' Get methods. ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. ENH: Improve style for itkThresholdLabelerImageFilter. ENH: Improve itkThresholdLabelerImageFilter coverage. ENH: Get internal ImageIO via a const macro. ENH: Improve the itkSimpleContourExtractorImageFilter coverage. STYLE: Improve the itkMetaArray class style. ENH: Improve MetaArrayReader/Writer coverages. ENH: Improve the itkCovarianceImageFunction style. STYLE: Improve itkVoronoiDiagram2DGenerator style. ENH: Improve VoronoiDiagram2DGenerator coverage. STYLE: Improve the itkBayesianClassifierImageFilter style. STYLE: Improve the itkMetaArrayWriter style. ENH: Improve itkCovarianteImageFunction coverage. COMP: Fix signed/unsigned int comparison warning. DOC: Improve itkGrayscaleDilateImageFilter documentation. DOC: Improve documentation for itkGrayscaleErodeImageFilter. DOC: Improve ConfigureHistogram method documentation. STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. BUG: Fix Superclass name in RTTI. STYLE: Improve itkGaussianInterpolateImageFunction style. ENH: Improve coverage for itkGaussianInterpolateImageFunction. ENH: Improve itkBayesianClassifierImageFilter coverage. ENH: Add itkBSplineControlPointImageFilter RTTI. STYLE: Improve itkBSplinecontrolPointImageFilter style. ENH: Improve itkBSplineControlPointImageFilter coverage. ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4. STYLE: Improve the class implementation file style. STYLE: Improve the itkResampleImageFilter style. DOC: Fix typo in GetMTime method doc. STYLE: Remove out-of-body implementation doc ENH: Improve itkResampleImageFilter coverage. ENH: Improve itkAbsImageAdaptor and Filter coverage. BUG: Fix itkLSMImageIO class' Superclass name. ENH: Improve the itkInterpolateImagePointsFilter coverage. ENH: Improve itkPowImageFilter coverage. BUG: Fix ConvolutionImageFilter RTTI. STYLE: Use initialization lists. STYLE: Improve BinaryFunctorImageFilter style. ENH: Improve itkMinimumImageFilter code coverage. BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. ENH: Improve MaximumImageFilter coverage. BUG: Fix conversion to PixelType conversion. COMP: Fix double to unsigned char conversion warning. ENH: Improve coverage for itkNormalizeToConstantImageFilter. BUG: Fix itkSquaredDifferenceErrorFunction RTTI. ENH: Improve itkMeanImageFunctionCoverage. ENH: Improve itkSquareImageFilter coverage. STYLE: Improve the itkSquaredDifferenceErrorFunction style. STYLE: Enhance style for itkNormalizeToConstantImageFilter. STYLE: Improve itkMeanImageFunction style. ENH: Remove unnecesary call to filter print. ENH: Improve itkRegionOfInterestImageFilter coverage. STYLE: Improve itkRegionOfInterestImageFilter style. STYLE: Improve itkPasteImageFilter style. STYLE: Improve itkJoinSeriesImageFilter style. BUG: Fix itkPadLabelMapFilter RTTI Superclass. COMP: Address std::cout.precision conversion warning. ENH: Improve itkBayesianClassifiertImageFilter coverage. ENH: Improve itkPadLabelMapFilter coverage. ENH: Improve itkJoinSeriesImageFilter coverage. ENH: Improve the itkPasteImageFilter coverage. ENH: Improve MeanImageFilter coverage. COMP: Address std::cout.precision conversion warning. ENH: Improve TernaryMagnitudeImageFilter coverage. ENH: Improve FFTConvolutionImageFilter coverage. DOC: Fix class documentation in ternary magnitude filters. ENH: Improve ConstrainedValueDifferenceImageFilter coverage. ENH: Improve AndImageFilter coverage. ENH: Add baseline test to itkTernaryMagnitudeImageFilter. ENH: Use MD5 comparison framework in baseline test. ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. STYLE: Improve the itkVectorRescaleIntensityImageFilter style. ENH: Print missing ivar in filter PrintSelf method. ENH: Improve itkComplexToImaginaryFilter coverage. ENH: Improve itkComplexToPhaseImageFilter coverage. ENH: Improve itkComplexToModulusImageFilter coverage. ENH: Improve itkComplexToRealImageFilter coverage. ENH: Improve itkVectorResampleImageFilter coverage. ENH: Add GetTransform method. ENH: Improve itkConstrainedValueAdditionImageFilter coverage. ENH: Improve itkModulusImageFilter coverage. ENH: Improve itkLog10ImageFilter coverage. ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. ENH: Improve itkLogImageFilter coverage. ENH: Improve itkInvertIntensityImageFilter coverage. STYLE: Improve itkInvertIntensityImageFilter style. DOC: Add missing doc to itkInvertIntensityImageFilter. STYLE: Improve itkIntensityWindowingImageFilter style. STYLE: Use initialization lists. ENH: Improve itkIntensityWindowingImageFilter coverage. ENH: Improve itkNaryMaximumImageFilter coverage. COMP: Fix std::precision type casting warning. ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod style. ENH: Remove SmartPointers being explicitly initialized to null. STYLE: Improve the itkPointSetToImageRegistrationMethod style. ENH: Improve itkPointSetToImageRegistration coverage. STYLE: Change the name of the itkPointSetToImageRegistrationMethod test. STYLE: Improve itkVectorResampleImageFilter style. STYLE: Improve the itkAntiAliasBinaryImageFilter style. ENH: Improve trigonometric function filters' coverage. STYLE: Remove test names from std::out messages. ENH: Improve Boolean Algebra ImageFilters coverage. STYLE: Improve the EuclideanDistancePointMetric style. ENH: Improve itkSigmoidImageFilter coverage. STYLE: Improve itkCropImageFilter style. ENH: Improve itkCropImageFilter coverage. ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. ENH: Improve itkRescaleIntensityImageFilter coverage. ENH: Improve the itkMatrixSelectionImageFilter coverage. ENH: Improve itkTanImageFilter and Adaptor coverage. ENH: Increase itkSqrtImageFilter and Adaptor coverage. ENH: Increase itkTernaryOperatorImageFilter coverage. ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. STYLE: Improve itkScalarImagekmeansImageFilter style. STYLE: Conform to TEST_SET_GET_VALUE definition. BUG: Fix uninitialized variable due to dynamic analysis defect. BUG: Fix uninitialized variable defect reported by valgrind. ENH: Improve the itkPointSetToPointSetRegistrationTest. ENH: Improve the itkPointSetToImageRegistrationTest. ENH: Increas BinaryMagnitudeImageFilter coverage. STYLE: Remove test name from std output. ENH: Increase MagnitudeImageFilter coverage. BUG: Fix uninitialized variable defect reported by valgrind. BUG: Fix Superclass name in RTTI. STYLE: Improve itkFrustumSpatialFunction style. STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction style. BUG: Fix Superclass template argument list. STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. STYLE: Improve the itkCheckerBoardImageFilter class style. ENH: Improve the itk::LabelVotingImageFilter coverage. ENH: Improve itkCheckerBoardImageFilter coverage. STYLE: Improve itk::LabelVotingImageFilter style. STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. ENH: Add test for itk::FrustumSpatialFunction class. ENH: Improve itkConnectedThresholdImageFilter coverage. STYLE: Improve itkConnectedThresholdImageFilter style. BUG: Fix FrustumSpatialFunction internal precision conversion. COMP: Fix implicit conversion warning. STYLE: Improve itkThresholdImageFilter style. ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. BUG: Fix Superclass template argument list. ENH: Improve itkUnsharpMaskingImageFilter implementation. ENH: Improve the itkUnsharpMaskingImageFilter coverage. ENH: Fix UnsharpMaskingImageFilter test inconsistencies. BUG: Add missing itkTypeMacro. DOC: Document the member variables. BUG: Fix the itkImageSource RTTI class name, STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style. ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. STYLE: Improve itkLabelOverlapMeasurementImageFilter style. KWSys Robot (6): KWSys 2016-06-30 (96f06c8e) KWSys 2016-10-23 (b630d2f5) KWSys 2016-11-03 (37306a1c) KWSys 2016-11-08 (2b3e2b1c) KWSys 2016-11-09 (18c65411) KWSys 2016-11-21 (cb55cf5a) Maeliss Jallais (1): BUG: Add unsigned and signed short to the wrapping of vnl_matrix Matthew McCormick (85): PERF: Simplify HilbertPath numberOfPathVertices computation. BUG: CID 1355469 NNetClassifierTest4 unintended integer division. BUG: Update Cuberille Remote for version check fix. ENH: Bump ITK version to 4.11.0. BUG: Fix HDF5ImageIO type information. BUG: Fix H5File memory leak in HDF5ImageIO. DOC: Collect Francois Budin's contributions in .mailmap BUG: Limit WRAP_ITK_MODULES when building externally STYLE: Improvements to ResourceProbe report output. ENH: Add a useTabs argument to ResourceProbe::Report. ENH: Add standard error measure to the ResourceProbe ENH: Add itk_python_add_test function. BUG: Remove VNL file from subtree merge. COMP: Fix wrapping with a space in the Python include path BUG: Fix PermuteAxesImageFilter pipeline method visibility BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter BUG: ResampleImageFilter honor isInside output of the transform method COMP: Avoid recursive include of itkMath.h COMP: Fix VXL header installation locations BUG: ClampImageFilterTest for older GCC, InPlaceOn DOC: Add CONTRIBUTING.md file to the top level. COMP: Update VariationalRegistration to address Doxygen warnings BUG: Compiler detections file installed into ITK build tree location COMP: Do not use string(TIMESTAMP. COMP: Remove HDF5 -std=c99 for C++ files BUG: Do not build HDF5 static library with a shared build ENH: Add PerformanceBenchmarking Remote Module COMP: Remove duplicate wrappings for ResampleImageFilter BUG: Put Python test output files in the build tree BUG: Improve HDF5ImageIO::CloseDataSet name COMP: Use add_python_test PythonLazyLoadingImage COMP: Address missing override it itkFactoryTestLib.cxx BUG: Index,Size,Offset constructors present in Python with C++11 COMP: Address missing override it itkFactoryTestLib.cxx BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT ENH: Bump SetupForDevelopment version BUG: Add missing ZLib deflate support to HDF5 BUG: Address memory leak, remove NumPy build dep in BridgeNumPy COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include ITK_WRAP_IMAGE_DIMS BUG: RichardsonLucyDeconvolutionImageFilter with non-null input Image Origin BUG: Fix inconsistent Twister start with Initialize(seed) and SetSeed(seed) BUG: Do not hard code CMake scripts in HDF5 COMP: Workaround Emscripten ITKCommon test build failure COMP: Do embed fancy HDF5 libsettings with Emscripten COMP: Add missing H5T_patch_vlen_file declaration ENH: Bump CastXML to 2016-10-11 master. COMP: Workaround Emscripten ITKCommon test build failure BUG: Swap CastXML hashes for Mac OSX and Windows ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 COMP: Fix VNL tests when cross-compiling ENH: ExternalData multi-algorithm support ENH: ExternalData support for data.kitware.com BUG: Install missing H5pubconf.h BUG: Use SpacePrecisionType in TileImageFilter BUG: Use internal ExternalData_Add_Target ENH: Run .sha512, .md5 simultaneous modification pre-commit check BUG: Correct CastXML Windows binary BUG: Support non-zero Index in LevelSetNeighborhoodExtractor ENH: Add ArchiveTestingDataOnGirder.py BUG: Correct AtanRegularizationHeavisideStepFunction derivative ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh BUG: Remove extra HessianToObjectness content links ENH: Wrap SpatialFunction float types with ITK_WRAP_float BUG: Bump PerformanceBenchmarking to 2016-11-04 BUG: itk_python_expression_add_test too many quotes. ENH: Wrap VectorImage with complex real pixel types ENH: Bump PerformanceBenchmarking to 2016-11-07 BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter ENH: Create itk_module_add_library macro BUG: Update computeCodeCoverageLocally.sh for KWStyle addition COMP: Install a newer version of CMake on CircleCI ENH: Use GitHub Pages as the first ExternalData resource ENH: Add tests to demonstrate OSX dynamic_cast failure BUG: Use random seed with for MersenneTwisterRandomVariateGenerator. BUG: Enable program global timestamp BUG: Set random number seed in Mattes metric test BUG: Notify builder that ITK_DYNAMIC_LOADING is required with wrapping BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON BUG: Set random number seed mutual information metric tests BUG: Wrap std::vector< itk.Point > BUG: Fix wrapping of LandmarkBasedTransformInitializer BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter DOC: Add D?enan Zuki? to .mailmap Max Smolens (4): COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field BUG: CID-1355438 QuadEdgeTest1 resource leaks COMP: CID-1355472 MIRegistrationFunction unused value COMP: Fix link errors for VNL template instantiations on Windows Mayeul Chassagnard (7): BUG: Test added and error fixed in HDF5ImageIO ENH: Update add_library TO itk_module_add_library COMP: Set Policy CMP0023 target_link_libraries for Modules/ThirdParty/VNLI... BUG: Add ITK_TEMPLATE_EXPORT to template classes BUG: Fix errors linked to dyn_cast merge BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes BUG: dash3win7 dashboard build error unresolved external symbol Michka Popoff (3): ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 ENH: Update igenerator.py for pygccxml v1.8.0 COMP: Use pygccxml's public API for apply definitions Pierre Barbier de Reuille (2): COMP: Fix function naming error when using FFTWD COMP: Fix function naming error when using FFTWD Sean McBride (1): COMP: Bypass HDF5 bugs under TSan Simon Rit (2): COMP: remove C++11 compiler warning for CUDA compilations COMP: remove C++11 compiler warning for CUDA compilations Somesh Kashyap (2): BUG: Override TransformCategoryType for AzimuthElevationToCartesianTransform BUG: -Added test case for itkAzimuthElevationToCartesianTransform Sumedha Singla (1): ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote module Taylor Braun-Jones (4): COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is enabled COMP: Fix truncation from double to float warning DOC: Fix incorrect itkFactorylessNewMacro documentation COMP: Only include the headers for required OpenCV modules Thien Nguyen (1): PERF: SmapsFileParser unnecessary dynamic_cast VXL Maintainers (4): VNL 2016-05-15 (14f97ab4) VNL 2016-06-22 (23a93adb) VNL 2016-06-29 (d62a2d70) VNL 2016-07-06 (acfa62cc) Vladimir S. FONOV (1): COMP: Build against GCC 5.3.1 Zach Williamson (2): ENH: Update Remote Module Tags BUG: Fix Python Wrappings in C++11 Ziv Yaniv (1): BUG: Metric sampling percentage accepted values outside (0.0, 1.0]. ----------------------------------------------------- Errors or omissions? Please fix them here: https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFrA54KRvf__4oeT0ymzZg/edit From francois.budin at kitware.com Tue Jan 10 09:45:07 2017 From: francois.budin at kitware.com (Francois Budin) Date: Tue, 10 Jan 2017 09:45:07 -0500 Subject: [ITK-dev] vcpkg In-Reply-To: References: Message-ID: Never heard of it before. It does look interesting. We could try to estimate how much work it would be to port ITK (and VTK?) to that platform. Since it supports CMake [1], it may not be much work. Francois [1] https://github.com/Microsoft/vcpkg/blob/master/docs/EXAMPLES.md#example-1-2-b On Mon, Jan 9, 2017 at 6:56 PM, D?enan Zuki? wrote: > Hi guys, > > vcpkg > > looks like a good effort for easing library installation for usage in > Visual Studio. Should we join the effort by adding ITK and VTK? Has anyone > tried/started doing this? > > Regards, > D?enan > > _______________________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Kitware offers ITK Training Courses, for more information visit: > http://kitware.com/products/protraining.php > > Please keep messages on-topic and check the ITK FAQ at: > http://www.itk.org/Wiki/ITK_FAQ > > Follow this link to subscribe/unsubscribe: > http://public.kitware.com/mailman/listinfo/insight-developers > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dzenanz at gmail.com Tue Jan 10 10:42:00 2017 From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=) Date: Tue, 10 Jan 2017 10:42:00 -0500 Subject: [ITK-dev] [vtkusers] vcpkg In-Reply-To: <20170110151530.GA29840@megas.kitware.com> References: <20170110151530.GA29840@megas.kitware.com> Message-ID: If there is no undergoing effort to "port" VTK to vcpkg, we could go ahead and add ITK with VTKGlue disabled. Once VTK is added, we could turn on VTKGlue and make VTK a dependency. P.S. I originally cross-posted this to ITK and VTK developers lists, but since I am only subscribed to VTK-users my message was bounced from VTK-developers. Hence this "merge" message including Francois' response. Francois Budin 9:45 AM (52 minutes ago) to me, vtk-developers, ITK Never heard of it before. It does look interesting. We could try to estimate how much work it would be to port ITK (and VTK?) to that platform. Since it supports CMake [1], it may not be much work. Francois [1] https://github.com/Microsoft/vcpkg/blob/master/docs/ EXAMPLES.md#example-1-2-b On Tue, Jan 10, 2017 at 10:15 AM, Ben Boeckel wrote: > On Mon, Jan 09, 2017 at 18:58:40 -0500, D?enan Zuki? wrote: > > vcpkg > > tool-to-acquire-and-build-c-open-source-libraries-on-windows/> > > looks > > like a good effort for easing library installation for usage in Visual > > Studio. Should we join the effort by adding ITK and VTK? Has anyone > > tried/started doing this? > > CPack would likely need to support it first. Moving VTK over to the new > superbuild would also help there. > > --Ben > -------------- next part -------------- An HTML attachment was scrubbed... URL: From blowekamp at mail.nih.gov Thu Jan 12 11:19:48 2017 From: blowekamp at mail.nih.gov (Lowekamp, Bradley (NIH/NLM/LHC) [C]) Date: Thu, 12 Jan 2017 16:19:48 +0000 Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.11 Release Candidate 1 is ready for testing! In-Reply-To: References: Message-ID: Hello, An additional bug fix that may have impact on registration is this one: https://github.com/InsightSoftwareConsortium/ITK/commit/99a7ac8f3ab88cdc508084e4921f0f4c9678468b The ITKv4 parameter estimators where using an incorrect algorithm for ?affine? or ?linear? transforms. The previous incorrect algorithm used random samples, which produced unstable parameter scales. Because of the change to the wall clock initialized random generator, I have found that many registrations were overly sensitive to these random estimated scale. The correction to fixed corner based sampling should produce stable and reproducible results moving forward. Brad > On Jan 9, 2017, at 8:08 PM, Matt McCormick wrote: > > On behalf of the Insight Toolkit community, we are proud to announce > that ITK 4.11 release candidate 1 has been tagged and is available for > testing! Please take this opportunity to test the new features in the > release candidate. > > > To obtain the source code, > > git clone https://itk.org/ITK.git > cd ITK > git checkout -q --detach v4.11rc01 > > For more details, please see the Git documentation [1]. > > > A few selected highlights for this release: > > > - Remote Modules were added to: perturb mesh vertices with additive > gaussian noise, accurately benchmark computational performance, > perform principal components analysis of scalar, vector, and mesh > vertex data, create a run-length encoded memory compression scheme for > itk::Image, run N-D morphological contour interpolation, interpolate > multi-label images, iterate over multiple images simultaneously, and > compute inverse displacement fields. > - NumPy bridge support is now enabled by default with NumPy array > views of multi-component images and VNL vectors and matrices. > - Internal HDF5 was updated to the latest upstream version along > with a number of other third-party libraries. > > > This release introduces a new template class export specification > macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated > classes to address failing dynamic_cast's and exception catching > across binaries on Mac OSX. > > Bugs were addressed and improvements were made to how the > pseudo-random number generator is used. Tests that rely on the random > number generator should explicitly set the global seed at start: > > itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance()->SetSeed( > 121212 ); > > To improve randomness, new instances of the generator start from a > different seed; some minor differences in the output of algorithms > that uses the generator, like mutual information metrics, should be > expected. > > > Please test the release candidate and share your experiences on the > mailing list, issue tracker, and Gerrit Code Review. > > An Experimental build, which demonstrates how the test suite performs > on your local build system, can be submitted to the dashboard [2] > with: > > mkdir ../ITK-build > cd ../ITK-build > cmake ../ITK > ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit > > Visual Studio builds must also add ?-C Release? to the ctest command. > > Notify the mailing list if there are any unexpected failures. Testing > your own applications against the RC is also appreciated. > > > Congratulations to the 31 contributors to this release. We would > especially like to recognize the new contributors: Hastings Greer, > Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, > Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss > Jallais. > > > The 4.11.0 final release is scheduled for January 23rd. > > > [1] http://www.itk.org/Wiki/ITK/Git > > [2] http://open.cdash.org/index.php?project=Insight > > > New Features > ------------ > > * Wrapping Improvements > - Python GetArrayFromImage() and GetImageFromArray() from > ITKBridgeNumPy are directly accessible from the Python itk namespace. > - The itk package loads much faster: individual modules are loaded > only when required. > - Conversion of ITK images from and to NumPy array using Bridge > NumPy supports RGB, RGBA, and Vector images. > - VNL vectors and VNL matrices can be converted from and to NumPy > objects with respectively the new couple of functions > GetArrayFromVnlVector()/GetVnlVectorFromArray() and > GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() > - The global timestamp is used across all ITK Python modules when > built statically > - Wrap additional classes such as KernelFunctionBase > - itk_python_add_test CMake function added for Python script testing > in ITK modules > > * New Remote Modules > - DVMeshNoise > - Perturbing mesh vertices with additive gaussian noise > - http://hdl.handle.net/10380/3567 > - PerformanceBenchmarking > - Accurate benchmarking of computational performance > - http://hdl.handle.net/10380/3557 > - PrincipalComponentsAnalysis > - Principal components analysis of scalar, vector, and mesh vertex data > - http://hdl.handle.net/10380/3386 > - RLEImage > - Run-length encoded memory compression scheme for itk::Image > - http://hdl.handle.net/10380/3562 > - MorphologicalContourInterpolation > - N-D morphological contour interpolation > - http://hdl.handle.net/10380/3563 > - GenericLabelInterpolator > - A generic interpolator for multi-label images > - http://hdl.handle.net/10380/3506 > - MultipleImageIterator > - Iterate over multiple images simultaneously > - http://hdl.handle.net/10380/3455 > - FixedPointInverseDisplacementField > - Computes inverse displacement field > - http://hdl.handle.net/10380/3222 > > * Core Improvements > - New ITK_TEMPLATE_EXPORT for templated classes resolves > cross-binary dynamic_cast on Mac OSX > - New MersenneTwisterRandomVariateGenerator instances are > initialized with different seeds > - Use compiler feature detection in CMake for C++11 features, etc. > - New CMake macro itk_module_add_library for creating libraries in ITK modules > - Improved support for ccache and distcc with > CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) > - Support for .sha512 ExternalData content links > - GitHub Pages and data.kitware.com ExternalData repositories added > - GPGPU system support for C++11 > - Support of new compilers: Visual Studio 15 and XCode 8.2.1 > (clang-800.0.42.1) > > * Filtering Improvements > - HessianToObjectnessMeasure moved out of the ITKReview module > - New UnsharpMaskImageFilter for image edge enhancement > > * IO Improvements > - TransformFactory class has been moved to a separate module > - Spline order added to BSplineTransform identifier > - Improved NIFTI orientation support > > * Documentation Improvements > - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples > > * Third Party Library Updates > - pygccxml updated to v1.8.0 > - VNL updated to latest upstream (2016.07.06) > - SWIG updated to v3.0.11 > - KWSys updated to latest upstream (2016.11.21) > - HDF5 updated to v1.8.17 > - SCIFIO updated to latest upstream (2016.12.01) > - DCMTK updated to 3.6.1_20121012 > - CastXML to latest upstream (2016.01.28) > > * Improved Code Coverage -- we are at 85.44%! > - Jon Haitz-Legarreta's extensive code coverage improvements > - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ > > * *Lots* of important bug fixes > > * And much more! See details in the log below. > > > Changes from v4.10.0 to v4.11rc01 > ------------------------------------------------ > > Bill Lorensen (4): > COMP: Restore support for clang 3.0 compiler > COMP: Consistent use of ModifiedTimeType > ENH: Bump WikiExamples remote module version > ENH: Bump WikiExamples version > > Bradley Lowekamp (57): > ENH: Add registered TrasformIO's to exception > ENH: Use template or constant for loop stop condition > ENH: Updating SWIG version to 3.0.9 > COMP: Address VS9 ambiguous std::abs call in Haung calculator > COMP: Fix undefined NumericTraits::Zero and One errors with mingw64 > BUG: Fix segfault if ~CleanUpObjectFactory called multiple times > BUG: Address itkHDF5ImageIO test failures for mingw64 > BUG: demonstrate dynamic_cast failure when reading transforms > BUG: Address itkHDF5ImageIO test failures for mingw64 > ENH: Updating SWIG version to 3.0.10 > ENH: Enable CMP0063 New behavior > COMP: Enable hidden visibility property with vxl static libraries > COMP: Enable hidden visibility property with HDF5 static libraries > COMP: Enable hidden visibility property with HDF5 static libraries > BUG: Match Add2 function to AddImageFilter documentation > ENH: Improve support for std::complex with PowImageFilter > ENH: Explicitly mark required files for dependent tests > COMP: Bypass XCode 7.3,8 internal compilation error > COMP: Address CMake configuration error with itkJPEG2000Test03 property > BUG: Correct test's REQUIRED_FILES to only the input. > ENH: move HessianToObjectnessMeasure filter out of Review > ENH: Separate TransformFactory class into separate module > DOC: Add links between similar label to rgb filters > ENH: Separate data from function calls > COMP: Fix changed Graft method > ENH: Reduce template dependencies on CalculateRotationMatrix > ENH: Add Functor Accessors to LabelMapToRGB filter > BUG: Enable VirtualDomain and FixedTransform in RegMethv4 > BUG: Use BSpline Order 3 for 2D in transform factory. > ENH: Add spline order to BSplineTransform's string id > ENH: Adding initial CircleCi configuration file > COMP: Fix float to unsigned integer conversion warnings > BUG: Include installed modules in ITK_MODULES_ENABLED > COMP: Address CMake error that ITKGPUCommon is not in export > COMP: Address wrong library types with VS and shared libraries > BUG: Ensure CreateImageIO is concurrent thread safe > ENH: Mark HDF5 CMake options as internal > COMP: Add template export declaration for ParametricPath > COMP: Correct TEMPLATE_EXPLICIT definition in Path module > ENH: Factor out common code in the TrasformFactoryBase registration > ENH: Add CMake variable for max transform dimension, defaults 4 > ENH: Create CMake module to check for private RTTI compatibility > ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT > COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT > BUG: Add explicit instantiate for ObjectToObjectOptimizerBase > COMP: Use add_definitions for CMake 2.8.9 compatibility > COMP: Add warning suppression for distcc warning > ENH: Explicitly instantiate the optimizer base over float > BUG: Use IsLinear to check if transform is "affine" > ENH: Remove unneeded includes of random iterator header > ENH: Improve thread-safety for Generator, and unique New sequence > ENH: Do not use global random generator > BUG: Update v3 registration metrics to use local seed > ENH: Prefer setting local seed over global in tests. > ENH: Update SWIG to latest 3.0.11 release > BUG: relax testing parameters for v3 translation registration > BUG: Restore baseline for debug registration > > Caspar Goch (2): > BUG: Use printable type for RGBA pixel ostream for ITK-3501 > STYLE: Remove extra space for ITK-3501 > > Christina Rossmanith (1): > DOC: Added more details to the class Doxygen documentation. > > Davis Vigneault (2): > COMP: VCL_DEFINE_SPECIALIZATION not defined > ENH: Add remote module DVMeshNoise > > D?enan Zuki? (27): > BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) > ENH: Adding MultipleImageIterator as a remote module > COMP: enables TBB 4.4 back-end for VTK7's SMP > COMP: enabling position independent code flag for FFTW > ENH: adding configuration file for code reformatting tool clang-format > ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 > COMP: Fixing -fPIC flag passing with Ninja build system > ENH: Adding RLEImage as a remote module > ENH: Updating uncrustify configuration to current git version > STYLE: better compliance with ITK style > STYLE: A new option in uncrustify, updating the config file accordingly > ENH: Adding MorphologicalContourInterpolation as a remote module > ENH: improving documentation > BUG: fixing buffer growing endlessly, as reported by Timothee Evain > BUG: fixing buffer growing endlessly, as reported by Timothee Evain > STYLE: default uncrustify configuration file is less aggressive > COMP: Fixing warning > COMP: VS15 compiler fix > BUG: casting -9 to unsigned produced unwanted result > BUG: Ensuring consistency between debug and release > COMP: Updating LesionSizingToolkit after some recent compile fixes > COMP: respect option METAIO_USE_NAMESPACE > ENH: updating version of AnisotropicDiffusionLBR > ENH: adding UnsharpMaskingImageFilter > COMP: explicitly cast to output type > BUG: double call to update would cause empty output image > ENH: Updating RLEImage remote module. Change-log: > > Eugene Prilepin (4): > ENH: Add the "ITK_USE_GPU" to ITK Config > BUG: Fix API for set/get "LaplacianImageFilter" object > ENH: Add support of images types with the 'CovariantVector' pixel type > ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap > > Francois Budin (52): > ENH: Adding GetArrayFromImage in python itk namespace > ENH: Adding GetImageFromArray in python itk namespace > ENH: *_WRAP_* variable per external module > BUG: ImportImageFilter not responsible of memory management > ENH: New remote module GenericLabelInterpolator > DOC: SetNumberOfOutputs had wrong comment > BUG: lazyAttributes dictionary keys could be over-ridden > BUG: lazyAttributes dictionary keys could be over-ridden > BUG: Fix recent update of HDF5 (1.8.17) > ENH: Update SCIFIO to latest version on 08/23/2016 > ENH: Addition of the remote module FixedPointInverseDisplacementField > ENH: Update SCIFIO to latest version on 08/29/2016 > BUG: Path to commit was relative instead of absolute > ENH: Path to SetupForDevelopment is relative, not absolute > BUG: LSMImageIO write function was not checking image dimension > BUG: LSMImageIO was not checking correctly image dimension > BUG: Missing associated test data > BUG: Missing associated test data > ENH: Bump CMakeLists.txt version to 4.10.1. > BUG: Quotes are not escaped in configured cmake file > ENH: Improving API of Graft() in itk::Image > ENH: Updating ITKGenericLabelInterpolator remote module > ENH: Update ITKIOTransformDCMTK remote module > BUG: Factory registration should depend on ITK_BUILD_SHARED > COMP: Updating DCMTK compilation for Ninja > ENH: Update version of DCMTK to 3.6.1_20121012 > ENH: Update SCIFIO to latest version on 10/25/2016 > BUG: Swig and PCRE do not support space in installation paths > BUG: exit() call from within piped commands was not exiting the script > BUG: Typo in folder creation command > ENH: Only display message for transform registered multiple times in debug > ENH: Image spacing must be positive > BUG: Supported extensions by PNG IO were not added in constructor. > DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. > ENH: Update SCIFIO to lastest (2016.12.01) > ENH: FixedPointInverseDisplacementField moved to InsightSoftwareConsortium > COMP: Remove compilation warnings > ENH: Improved support of ccache and distcc > BUG: GPUImage regression due to API change. > ENH: Update Bridge Numpy (2016.12.05) > ENH: Update VariationalRegistration to remove warnings during compilation > ENH: FindPythonLibs does not support both debug and release > python libraries > ENH: Update VariationalRegistration > BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of itk::ImageBase > BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper > BUG: Missing ITK_TEMPLATE_EXPORT in templated class > BUG: Remove linkage warnings on MacOS > BUG: HDF5 CMake installation directory variable had not been updated > BUG: Missing include header in AnisotropicDiffusionBLR remote > module hxx files > COMP: Silencing unused variable warning in itkTimeStamp > STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt > COMP: OS*Barrier functions are deprecated on MacOS 10.12 > > GCC-XML Upstream (1): > ENH: pygccxml v1.8.0 (reduced) > > Gert Wollny (1): > BUG: Relax vnl_complex floating point comparisons for i386 > > Gilles Filippini (1): > BUG: Use NATIVE_HBOOL for encoding HDF5 types. > > HDF Group (1): > ENH: hdf5 1.8.17-r30218 (reduced) > > Hans Johnson (23): > COMP: Use cmake WriteCompilerDetectionHeader > ENH: Use itk_compiler_detection versions > COMP: Need ITK_NOEXCEPT_OR_THROW macro. > COMP: Provide consistent granular C++11 support > STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT > STYLE: Prefer to use consistent definitions > COMP: Improve robustness of identifying the compiler standard used > BUG: try_compile for AlignAs were always failing > STYLE: Provide a well documented macro for repeated code > STYLE: Delete functions in consistent way > COMP: GPU baseclass ivars need to be protected > COMP: Remove unnecessary circular dependancy > COMP: Add long long usage for HDF5 > COMP: Add long long usage for HDF5 > STYLE: Prefer static small array to dynamic array > BUG: Confusing interface for FFTW wisdom files > STYLE: Output dimension from OutputImageType > STYLE: Code review style cleanups > STYLE: Prefer to use ITK AssertOrThrow macros > ENH: Add OverrideBoundaryCondition logic > ENH: Provide mechanism for enhanced NIFTI support > BUG: Use NIFTI sform/qform conventions correctly > ENH: Remove ambiguity about sform/qform > > Hastings Greer (8): > BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically > BUG: make itkTriangleHelper instantiable to ease wrapping > BUG: remove lsqr because of license issues ITK 1160 > BUG: make itkTriangleHelper instantiable to ease wrapping > BUG: initialize X to zero in lsmr Solve > BUG: Labled Point Set Registration: test multiple labels > BUG: Fix python wrapping of Cuberille remote module > BUG: Add test demonstrating Python global timestamp issue > > Jean-Christophe Fillion-Robin (5): > STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393 > STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 > STYLE: Update MeshIO factories to use RegisterFactoryInternal. See #3393 > STYLE: MeshIO: Move MeshFileWriterException into its own file. See #3393 > STYLE: MeshIO: Remove unused include from headers. See #3393 > > Johan Andruejol (3): > ENH: Add missing itkKernelFunctionBase wrapping > ENH: Add PrincipalComponentsAnalysis remote module > COMP: Override cannot be used with inline > > Jon Haitz Legarreta (216): > ENH: Improve itkFlatStructutingElement coverage. > ENH: Improve itkPathToImageFilter class coverage. > ENH: Improve itkIsolatedWatershedImageFilter coverage. > ENH: Improve itkLogSigmoidTransferFunction coverage. > STYLE: Improve itkBSplineTransform doc style. > ENH: Improve GaborKernelFunctionCoverage. > PERF: Remove duplicate itkMath include > STYLE: Move the PrintSelf method to the end > STYLE: Improve the itkScalarToRGBColormapImageFilter style. > STYLE: Delete duplicate method documentation > STYLE: Remove method documentation from implementation file > STYLE: Improve GACLevelSet classes' style > STYLE: Improve test style > ENH: Improve itkGaussianDerivativeImageFilter coverage. > ENH: Improve the itkScalarToRGBColormapImageFilter coverage > STYLE: Improve itkScalarToRGBColormap test style > ENH: Improve GACLSImageFilter classes' coverage > STYLE: Improve comment style in GACLS tests > ENH: Improve itkImportImageFilter coverage > ENH: Improve itkVideoFileReader coverage > ENH: Improve itkVideoFileWriter coverage > STYLE: Improve the itkVideoFileWriter style. > STYLE: Imrpove itkVideoFileReader style. > ENH: Improve the itkBSplineControlPointImageFunction coverage > STYLE: Improve the itkIntensityWindowingImageFilter style > STYLE: Improve the itkIntensityWindowingImageFilter test style > ENH: Improve ImageToSpatialObjectRegistrationMethod coverage > STYLE: Improve test style > ENH: Improve MaskNeighborhoodOperatorImageFilter coverage > ENH: Improve itkMeshFileWriter coverage > ENH: Improve RescaleIntensityImageFilter coverage. > ENH: Improve itkClampImageFilter coverage. > BUG: Fix ivar type casting in PrintSelf. > STYLE: Improve MRIBiasFieldCorrectionFilter style. > ENH: Improve MRIBiasFieldCorrectionFilter coverage. > ENH: Improve itkIntensityWindowingImageFilter coverage > BUG: Fix Run-time type information in CSV module classes. > ENH: Improve the itkHistogram class code coverage. > DOC: Fix documentation typo. > STYLE: Improve the ImproveRescaleIntensityImageFilter style. > PERF: Make the itkVideoFileReader ivars private > PERF: Make itkVideoFileWriter ivars private > ENH: Improve coverage for itk::OrientImageFilter. > STYLE: Improve itk::OrientImageFilter class style. > ENH: Improve itkCSVNumericObjectFileWriter coverage. > ENH: Add missing standard class typdefs. > ENH: Improve itkVoronoiSegmentationImageFilter coverage. > ENH: Improve itkVoronoiSegmentationImageFilter style. > STYLE: Improve the MalahanobisDistanceThresholdImageFunction style. > ENH: Improve coverage for itkMalahanobisDistanceThreshold. > ENH: Improve itk::MinimumMaximumImageCalculator coverage. > ENH: Improve itkMinimumMaximumImageCalculator style. > BUG: Fix type mismatch in test. > STYLE: Improve itkPolylineMaskImagefilter style. > ENH: Improve itkPolylineMaskImageFilter coverage. > ENH: Improve itkFileListVideoStyle. > ENH: Improve itkLandmarkBasedTransformInitializer coverage. > ENH: Add baseline image to itkPolylineMaskImageFilter test. > ENH: Improve coverage for itkBSplineTransformInitializer. > STYLE: Improve itkBSplineTransformInitializer doc style. > ENH: Enhance itkBSplineTransformInitializer implementation. > DOC: Fix typo in method documentation. > ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. > STYLE: Improve the itkSimpleContourExtractorImageFilter style. > ENH: Exercise the class' Get methods. > ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. > ENH: Improve style for itkThresholdLabelerImageFilter. > ENH: Improve itkThresholdLabelerImageFilter coverage. > ENH: Get internal ImageIO via a const macro. > ENH: Improve the itkSimpleContourExtractorImageFilter coverage. > STYLE: Improve the itkMetaArray class style. > ENH: Improve MetaArrayReader/Writer coverages. > ENH: Improve the itkCovarianceImageFunction style. > STYLE: Improve itkVoronoiDiagram2DGenerator style. > ENH: Improve VoronoiDiagram2DGenerator coverage. > STYLE: Improve the itkBayesianClassifierImageFilter style. > STYLE: Improve the itkMetaArrayWriter style. > ENH: Improve itkCovarianteImageFunction coverage. > COMP: Fix signed/unsigned int comparison warning. > DOC: Improve itkGrayscaleDilateImageFilter documentation. > DOC: Improve documentation for itkGrayscaleErodeImageFilter. > DOC: Improve ConfigureHistogram method documentation. > STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. > BUG: Fix Superclass name in RTTI. > STYLE: Improve itkGaussianInterpolateImageFunction style. > ENH: Improve coverage for itkGaussianInterpolateImageFunction. > ENH: Improve itkBayesianClassifierImageFilter coverage. > ENH: Add itkBSplineControlPointImageFilter RTTI. > STYLE: Improve itkBSplinecontrolPointImageFilter style. > ENH: Improve itkBSplineControlPointImageFilter coverage. > ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4. > STYLE: Improve the class implementation file style. > STYLE: Improve the itkResampleImageFilter style. > DOC: Fix typo in GetMTime method doc. > STYLE: Remove out-of-body implementation doc > ENH: Improve itkResampleImageFilter coverage. > ENH: Improve itkAbsImageAdaptor and Filter coverage. > BUG: Fix itkLSMImageIO class' Superclass name. > ENH: Improve the itkInterpolateImagePointsFilter coverage. > ENH: Improve itkPowImageFilter coverage. > BUG: Fix ConvolutionImageFilter RTTI. > STYLE: Use initialization lists. > STYLE: Improve BinaryFunctorImageFilter style. > ENH: Improve itkMinimumImageFilter code coverage. > BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. > ENH: Improve MaximumImageFilter coverage. > BUG: Fix conversion to PixelType conversion. > COMP: Fix double to unsigned char conversion warning. > ENH: Improve coverage for itkNormalizeToConstantImageFilter. > BUG: Fix itkSquaredDifferenceErrorFunction RTTI. > ENH: Improve itkMeanImageFunctionCoverage. > ENH: Improve itkSquareImageFilter coverage. > STYLE: Improve the itkSquaredDifferenceErrorFunction style. > STYLE: Enhance style for itkNormalizeToConstantImageFilter. > STYLE: Improve itkMeanImageFunction style. > ENH: Remove unnecesary call to filter print. > ENH: Improve itkRegionOfInterestImageFilter coverage. > STYLE: Improve itkRegionOfInterestImageFilter style. > STYLE: Improve itkPasteImageFilter style. > STYLE: Improve itkJoinSeriesImageFilter style. > BUG: Fix itkPadLabelMapFilter RTTI Superclass. > COMP: Address std::cout.precision conversion warning. > ENH: Improve itkBayesianClassifiertImageFilter coverage. > ENH: Improve itkPadLabelMapFilter coverage. > ENH: Improve itkJoinSeriesImageFilter coverage. > ENH: Improve the itkPasteImageFilter coverage. > ENH: Improve MeanImageFilter coverage. > COMP: Address std::cout.precision conversion warning. > ENH: Improve TernaryMagnitudeImageFilter coverage. > ENH: Improve FFTConvolutionImageFilter coverage. > DOC: Fix class documentation in ternary magnitude filters. > ENH: Improve ConstrainedValueDifferenceImageFilter coverage. > ENH: Improve AndImageFilter coverage. > ENH: Add baseline test to itkTernaryMagnitudeImageFilter. > ENH: Use MD5 comparison framework in baseline test. > ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. > STYLE: Improve the itkVectorRescaleIntensityImageFilter style. > ENH: Print missing ivar in filter PrintSelf method. > ENH: Improve itkComplexToImaginaryFilter coverage. > ENH: Improve itkComplexToPhaseImageFilter coverage. > ENH: Improve itkComplexToModulusImageFilter coverage. > ENH: Improve itkComplexToRealImageFilter coverage. > ENH: Improve itkVectorResampleImageFilter coverage. > ENH: Add GetTransform method. > ENH: Improve itkConstrainedValueAdditionImageFilter coverage. > ENH: Improve itkModulusImageFilter coverage. > ENH: Improve itkLog10ImageFilter coverage. > ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. > ENH: Improve itkLogImageFilter coverage. > ENH: Improve itkInvertIntensityImageFilter coverage. > STYLE: Improve itkInvertIntensityImageFilter style. > DOC: Add missing doc to itkInvertIntensityImageFilter. > STYLE: Improve itkIntensityWindowingImageFilter style. > STYLE: Use initialization lists. > ENH: Improve itkIntensityWindowingImageFilter coverage. > ENH: Improve itkNaryMaximumImageFilter coverage. > COMP: Fix std::precision type casting warning. > ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. > STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod style. > ENH: Remove SmartPointers being explicitly initialized to null. > STYLE: Improve the itkPointSetToImageRegistrationMethod style. > ENH: Improve itkPointSetToImageRegistration coverage. > STYLE: Change the name of the itkPointSetToImageRegistrationMethod test. > STYLE: Improve itkVectorResampleImageFilter style. > STYLE: Improve the itkAntiAliasBinaryImageFilter style. > ENH: Improve trigonometric function filters' coverage. > STYLE: Remove test names from std::out messages. > ENH: Improve Boolean Algebra ImageFilters coverage. > STYLE: Improve the EuclideanDistancePointMetric style. > ENH: Improve itkSigmoidImageFilter coverage. > STYLE: Improve itkCropImageFilter style. > ENH: Improve itkCropImageFilter coverage. > ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. > ENH: Improve itkRescaleIntensityImageFilter coverage. > ENH: Improve the itkMatrixSelectionImageFilter coverage. > ENH: Improve itkTanImageFilter and Adaptor coverage. > ENH: Increase itkSqrtImageFilter and Adaptor coverage. > ENH: Increase itkTernaryOperatorImageFilter coverage. > ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. > STYLE: Improve itkScalarImagekmeansImageFilter style. > STYLE: Conform to TEST_SET_GET_VALUE definition. > BUG: Fix uninitialized variable due to dynamic analysis defect. > BUG: Fix uninitialized variable defect reported by valgrind. > ENH: Improve the itkPointSetToPointSetRegistrationTest. > ENH: Improve the itkPointSetToImageRegistrationTest. > ENH: Increas BinaryMagnitudeImageFilter coverage. > STYLE: Remove test name from std output. > ENH: Increase MagnitudeImageFilter coverage. > BUG: Fix uninitialized variable defect reported by valgrind. > BUG: Fix Superclass name in RTTI. > STYLE: Improve itkFrustumSpatialFunction style. > STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction style. > BUG: Fix Superclass template argument list. > STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. > STYLE: Improve the itkCheckerBoardImageFilter class style. > ENH: Improve the itk::LabelVotingImageFilter coverage. > ENH: Improve itkCheckerBoardImageFilter coverage. > STYLE: Improve itk::LabelVotingImageFilter style. > STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. > ENH: Add test for itk::FrustumSpatialFunction class. > ENH: Improve itkConnectedThresholdImageFilter coverage. > STYLE: Improve itkConnectedThresholdImageFilter style. > BUG: Fix FrustumSpatialFunction internal precision conversion. > COMP: Fix implicit conversion warning. > STYLE: Improve itkThresholdImageFilter style. > ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. > BUG: Fix Superclass template argument list. > ENH: Improve itkUnsharpMaskingImageFilter implementation. > ENH: Improve the itkUnsharpMaskingImageFilter coverage. > ENH: Fix UnsharpMaskingImageFilter test inconsistencies. > BUG: Add missing itkTypeMacro. > DOC: Document the member variables. > BUG: Fix the itkImageSource RTTI class name, > STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style. > ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. > STYLE: Improve itkLabelOverlapMeasurementImageFilter style. > > KWSys Robot (6): > KWSys 2016-06-30 (96f06c8e) > KWSys 2016-10-23 (b630d2f5) > KWSys 2016-11-03 (37306a1c) > KWSys 2016-11-08 (2b3e2b1c) > KWSys 2016-11-09 (18c65411) > KWSys 2016-11-21 (cb55cf5a) > > Maeliss Jallais (1): > BUG: Add unsigned and signed short to the wrapping of vnl_matrix > > Matthew McCormick (85): > PERF: Simplify HilbertPath numberOfPathVertices computation. > BUG: CID 1355469 NNetClassifierTest4 unintended integer division. > BUG: Update Cuberille Remote for version check fix. > ENH: Bump ITK version to 4.11.0. > BUG: Fix HDF5ImageIO type information. > BUG: Fix H5File memory leak in HDF5ImageIO. > DOC: Collect Francois Budin's contributions in .mailmap > BUG: Limit WRAP_ITK_MODULES when building externally > STYLE: Improvements to ResourceProbe report output. > ENH: Add a useTabs argument to ResourceProbe::Report. > ENH: Add standard error measure to the ResourceProbe > ENH: Add itk_python_add_test function. > BUG: Remove VNL file from subtree merge. > COMP: Fix wrapping with a space in the Python include path > BUG: Fix PermuteAxesImageFilter pipeline method visibility > BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter > BUG: ResampleImageFilter honor isInside output of the transform method > COMP: Avoid recursive include of itkMath.h > COMP: Fix VXL header installation locations > BUG: ClampImageFilterTest for older GCC, InPlaceOn > DOC: Add CONTRIBUTING.md file to the top level. > COMP: Update VariationalRegistration to address Doxygen warnings > BUG: Compiler detections file installed into ITK build tree location > COMP: Do not use string(TIMESTAMP. > COMP: Remove HDF5 -std=c99 for C++ files > BUG: Do not build HDF5 static library with a shared build > ENH: Add PerformanceBenchmarking Remote Module > COMP: Remove duplicate wrappings for ResampleImageFilter > BUG: Put Python test output files in the build tree > BUG: Improve HDF5ImageIO::CloseDataSet name > COMP: Use add_python_test PythonLazyLoadingImage > COMP: Address missing override it itkFactoryTestLib.cxx > BUG: Index,Size,Offset constructors present in Python with C++11 > COMP: Address missing override it itkFactoryTestLib.cxx > BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT > ENH: Bump SetupForDevelopment version > BUG: Add missing ZLib deflate support to HDF5 > BUG: Address memory leak, remove NumPy build dep in BridgeNumPy > COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory > COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory > BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include > ITK_WRAP_IMAGE_DIMS > BUG: RichardsonLucyDeconvolutionImageFilter with non-null input > Image Origin > BUG: Fix inconsistent Twister start with Initialize(seed) and SetSeed(seed) > BUG: Do not hard code CMake scripts in HDF5 > COMP: Workaround Emscripten ITKCommon test build failure > COMP: Do embed fancy HDF5 libsettings with Emscripten > COMP: Add missing H5T_patch_vlen_file declaration > ENH: Bump CastXML to 2016-10-11 master. > COMP: Workaround Emscripten ITKCommon test build failure > BUG: Swap CastXML hashes for Mac OSX and Windows > ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 > COMP: Fix VNL tests when cross-compiling > ENH: ExternalData multi-algorithm support > ENH: ExternalData support for data.kitware.com > BUG: Install missing H5pubconf.h > BUG: Use SpacePrecisionType in TileImageFilter > BUG: Use internal ExternalData_Add_Target > ENH: Run .sha512, .md5 simultaneous modification pre-commit check > BUG: Correct CastXML Windows binary > BUG: Support non-zero Index in LevelSetNeighborhoodExtractor > ENH: Add ArchiveTestingDataOnGirder.py > BUG: Correct AtanRegularizationHeavisideStepFunction derivative > ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh > BUG: Remove extra HessianToObjectness content links > ENH: Wrap SpatialFunction float types with ITK_WRAP_float > BUG: Bump PerformanceBenchmarking to 2016-11-04 > BUG: itk_python_expression_add_test too many quotes. > ENH: Wrap VectorImage with complex real pixel types > ENH: Bump PerformanceBenchmarking to 2016-11-07 > BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter > ENH: Create itk_module_add_library macro > BUG: Update computeCodeCoverageLocally.sh for KWStyle addition > COMP: Install a newer version of CMake on CircleCI > ENH: Use GitHub Pages as the first ExternalData resource > ENH: Add tests to demonstrate OSX dynamic_cast failure > BUG: Use random seed with for MersenneTwisterRandomVariateGenerator. > BUG: Enable program global timestamp > BUG: Set random number seed in Mattes metric test > BUG: Notify builder that ITK_DYNAMIC_LOADING is required with wrapping > BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON > BUG: Set random number seed mutual information metric tests > BUG: Wrap std::vector< itk.Point > > BUG: Fix wrapping of LandmarkBasedTransformInitializer > BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter > DOC: Add D?enan Zuki? to .mailmap > > Max Smolens (4): > COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field > BUG: CID-1355438 QuadEdgeTest1 resource leaks > COMP: CID-1355472 MIRegistrationFunction unused value > COMP: Fix link errors for VNL template instantiations on Windows > > Mayeul Chassagnard (7): > BUG: Test added and error fixed in HDF5ImageIO > ENH: Update add_library TO itk_module_add_library > COMP: Set Policy CMP0023 target_link_libraries for > Modules/ThirdParty/VNLI... > BUG: Add ITK_TEMPLATE_EXPORT to template classes > BUG: Fix errors linked to dyn_cast merge > BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes > BUG: dash3win7 dashboard build error unresolved external symbol > > Michka Popoff (3): > ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 > ENH: Update igenerator.py for pygccxml v1.8.0 > COMP: Use pygccxml's public API for apply definitions > > Pierre Barbier de Reuille (2): > COMP: Fix function naming error when using FFTWD > COMP: Fix function naming error when using FFTWD > > Sean McBride (1): > COMP: Bypass HDF5 bugs under TSan > > Simon Rit (2): > COMP: remove C++11 compiler warning for CUDA compilations > COMP: remove C++11 compiler warning for CUDA compilations > > Somesh Kashyap (2): > BUG: Override TransformCategoryType for > AzimuthElevationToCartesianTransform > BUG: -Added test case for itkAzimuthElevationToCartesianTransform > > Sumedha Singla (1): > ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote module > > Taylor Braun-Jones (4): > COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is enabled > COMP: Fix truncation from double to float warning > DOC: Fix incorrect itkFactorylessNewMacro documentation > COMP: Only include the headers for required OpenCV modules > > Thien Nguyen (1): > PERF: SmapsFileParser unnecessary dynamic_cast > > VXL Maintainers (4): > VNL 2016-05-15 (14f97ab4) > VNL 2016-06-22 (23a93adb) > VNL 2016-06-29 (d62a2d70) > VNL 2016-07-06 (acfa62cc) > > Vladimir S. FONOV (1): > COMP: Build against GCC 5.3.1 > > Zach Williamson (2): > ENH: Update Remote Module Tags > BUG: Fix Python Wrappings in C++11 > > Ziv Yaniv (1): > BUG: Metric sampling percentage accepted values outside (0.0, 1.0]. > > > ----------------------------------------------------- > Errors or omissions? Please fix them here: > > https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFrA54KRvf__4oeT0ymzZg/edit > _____________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Kitware offers ITK Training Courses, for more information visit: > http://www.kitware.com/products/protraining.php > > Please keep messages on-topic and check the ITK FAQ at: > http://www.itk.org/Wiki/ITK_FAQ > > Follow this link to subscribe/unsubscribe: > http://public.kitware.com/mailman/listinfo/insight-users From matt.mccormick at kitware.com Thu Jan 12 11:54:52 2017 From: matt.mccormick at kitware.com (Matt McCormick) Date: Thu, 12 Jan 2017 11:54:52 -0500 Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.11 Release Candidate 1 is ready for testing! In-Reply-To: References: Message-ID: Hello Brad, Good point. I added a comment in the release notes. Thanks, Matt On Thu, Jan 12, 2017 at 11:19 AM, Lowekamp, Bradley (NIH/NLM/LHC) [C] wrote: > Hello, > > An additional bug fix that may have impact on registration is this one: > https://github.com/InsightSoftwareConsortium/ITK/commit/99a7ac8f3ab88cdc508084e4921f0f4c9678468b > > The ITKv4 parameter estimators where using an incorrect algorithm for ?affine? or ?linear? transforms. The previous incorrect algorithm used random samples, which produced unstable parameter scales. Because of the change to the wall clock initialized random generator, I have found that many registrations were overly sensitive to these random estimated scale. The correction to fixed corner based sampling should produce stable and reproducible results moving forward. > > Brad > >> On Jan 9, 2017, at 8:08 PM, Matt McCormick wrote: >> >> On behalf of the Insight Toolkit community, we are proud to announce >> that ITK 4.11 release candidate 1 has been tagged and is available for >> testing! Please take this opportunity to test the new features in the >> release candidate. >> >> >> To obtain the source code, >> >> git clone https://itk.org/ITK.git >> cd ITK >> git checkout -q --detach v4.11rc01 >> >> For more details, please see the Git documentation [1]. >> >> >> A few selected highlights for this release: >> >> >> - Remote Modules were added to: perturb mesh vertices with additive >> gaussian noise, accurately benchmark computational performance, >> perform principal components analysis of scalar, vector, and mesh >> vertex data, create a run-length encoded memory compression scheme for >> itk::Image, run N-D morphological contour interpolation, interpolate >> multi-label images, iterate over multiple images simultaneously, and >> compute inverse displacement fields. >> - NumPy bridge support is now enabled by default with NumPy array >> views of multi-component images and VNL vectors and matrices. >> - Internal HDF5 was updated to the latest upstream version along >> with a number of other third-party libraries. >> >> >> This release introduces a new template class export specification >> macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated >> classes to address failing dynamic_cast's and exception catching >> across binaries on Mac OSX. >> >> Bugs were addressed and improvements were made to how the >> pseudo-random number generator is used. Tests that rely on the random >> number generator should explicitly set the global seed at start: >> >> itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance()->SetSeed( >> 121212 ); >> >> To improve randomness, new instances of the generator start from a >> different seed; some minor differences in the output of algorithms >> that uses the generator, like mutual information metrics, should be >> expected. >> >> >> Please test the release candidate and share your experiences on the >> mailing list, issue tracker, and Gerrit Code Review. >> >> An Experimental build, which demonstrates how the test suite performs >> on your local build system, can be submitted to the dashboard [2] >> with: >> >> mkdir ../ITK-build >> cd ../ITK-build >> cmake ../ITK >> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit >> >> Visual Studio builds must also add ?-C Release? to the ctest command. >> >> Notify the mailing list if there are any unexpected failures. Testing >> your own applications against the RC is also appreciated. >> >> >> Congratulations to the 31 contributors to this release. We would >> especially like to recognize the new contributors: Hastings Greer, >> Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, >> Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss >> Jallais. >> >> >> The 4.11.0 final release is scheduled for January 23rd. >> >> >> [1] http://www.itk.org/Wiki/ITK/Git >> >> [2] http://open.cdash.org/index.php?project=Insight >> >> >> New Features >> ------------ >> >> * Wrapping Improvements >> - Python GetArrayFromImage() and GetImageFromArray() from >> ITKBridgeNumPy are directly accessible from the Python itk namespace. >> - The itk package loads much faster: individual modules are loaded >> only when required. >> - Conversion of ITK images from and to NumPy array using Bridge >> NumPy supports RGB, RGBA, and Vector images. >> - VNL vectors and VNL matrices can be converted from and to NumPy >> objects with respectively the new couple of functions >> GetArrayFromVnlVector()/GetVnlVectorFromArray() and >> GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() >> - The global timestamp is used across all ITK Python modules when >> built statically >> - Wrap additional classes such as KernelFunctionBase >> - itk_python_add_test CMake function added for Python script testing >> in ITK modules >> >> * New Remote Modules >> - DVMeshNoise >> - Perturbing mesh vertices with additive gaussian noise >> - http://hdl.handle.net/10380/3567 >> - PerformanceBenchmarking >> - Accurate benchmarking of computational performance >> - http://hdl.handle.net/10380/3557 >> - PrincipalComponentsAnalysis >> - Principal components analysis of scalar, vector, and mesh vertex data >> - http://hdl.handle.net/10380/3386 >> - RLEImage >> - Run-length encoded memory compression scheme for itk::Image >> - http://hdl.handle.net/10380/3562 >> - MorphologicalContourInterpolation >> - N-D morphological contour interpolation >> - http://hdl.handle.net/10380/3563 >> - GenericLabelInterpolator >> - A generic interpolator for multi-label images >> - http://hdl.handle.net/10380/3506 >> - MultipleImageIterator >> - Iterate over multiple images simultaneously >> - http://hdl.handle.net/10380/3455 >> - FixedPointInverseDisplacementField >> - Computes inverse displacement field >> - http://hdl.handle.net/10380/3222 >> >> * Core Improvements >> - New ITK_TEMPLATE_EXPORT for templated classes resolves >> cross-binary dynamic_cast on Mac OSX >> - New MersenneTwisterRandomVariateGenerator instances are >> initialized with different seeds >> - Use compiler feature detection in CMake for C++11 features, etc. >> - New CMake macro itk_module_add_library for creating libraries in ITK modules >> - Improved support for ccache and distcc with >> CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) >> - Support for .sha512 ExternalData content links >> - GitHub Pages and data.kitware.com ExternalData repositories added >> - GPGPU system support for C++11 >> - Support of new compilers: Visual Studio 15 and XCode 8.2.1 >> (clang-800.0.42.1) >> >> * Filtering Improvements >> - HessianToObjectnessMeasure moved out of the ITKReview module >> - New UnsharpMaskImageFilter for image edge enhancement >> >> * IO Improvements >> - TransformFactory class has been moved to a separate module >> - Spline order added to BSplineTransform identifier >> - Improved NIFTI orientation support >> >> * Documentation Improvements >> - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples >> >> * Third Party Library Updates >> - pygccxml updated to v1.8.0 >> - VNL updated to latest upstream (2016.07.06) >> - SWIG updated to v3.0.11 >> - KWSys updated to latest upstream (2016.11.21) >> - HDF5 updated to v1.8.17 >> - SCIFIO updated to latest upstream (2016.12.01) >> - DCMTK updated to 3.6.1_20121012 >> - CastXML to latest upstream (2016.01.28) >> >> * Improved Code Coverage -- we are at 85.44%! >> - Jon Haitz-Legarreta's extensive code coverage improvements >> - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ >> >> * *Lots* of important bug fixes >> >> * And much more! See details in the log below. >> >> >> Changes from v4.10.0 to v4.11rc01 >> ------------------------------------------------ >> >> Bill Lorensen (4): >> COMP: Restore support for clang 3.0 compiler >> COMP: Consistent use of ModifiedTimeType >> ENH: Bump WikiExamples remote module version >> ENH: Bump WikiExamples version >> >> Bradley Lowekamp (57): >> ENH: Add registered TrasformIO's to exception >> ENH: Use template or constant for loop stop condition >> ENH: Updating SWIG version to 3.0.9 >> COMP: Address VS9 ambiguous std::abs call in Haung calculator >> COMP: Fix undefined NumericTraits::Zero and One errors with mingw64 >> BUG: Fix segfault if ~CleanUpObjectFactory called multiple times >> BUG: Address itkHDF5ImageIO test failures for mingw64 >> BUG: demonstrate dynamic_cast failure when reading transforms >> BUG: Address itkHDF5ImageIO test failures for mingw64 >> ENH: Updating SWIG version to 3.0.10 >> ENH: Enable CMP0063 New behavior >> COMP: Enable hidden visibility property with vxl static libraries >> COMP: Enable hidden visibility property with HDF5 static libraries >> COMP: Enable hidden visibility property with HDF5 static libraries >> BUG: Match Add2 function to AddImageFilter documentation >> ENH: Improve support for std::complex with PowImageFilter >> ENH: Explicitly mark required files for dependent tests >> COMP: Bypass XCode 7.3,8 internal compilation error >> COMP: Address CMake configuration error with itkJPEG2000Test03 property >> BUG: Correct test's REQUIRED_FILES to only the input. >> ENH: move HessianToObjectnessMeasure filter out of Review >> ENH: Separate TransformFactory class into separate module >> DOC: Add links between similar label to rgb filters >> ENH: Separate data from function calls >> COMP: Fix changed Graft method >> ENH: Reduce template dependencies on CalculateRotationMatrix >> ENH: Add Functor Accessors to LabelMapToRGB filter >> BUG: Enable VirtualDomain and FixedTransform in RegMethv4 >> BUG: Use BSpline Order 3 for 2D in transform factory. >> ENH: Add spline order to BSplineTransform's string id >> ENH: Adding initial CircleCi configuration file >> COMP: Fix float to unsigned integer conversion warnings >> BUG: Include installed modules in ITK_MODULES_ENABLED >> COMP: Address CMake error that ITKGPUCommon is not in export >> COMP: Address wrong library types with VS and shared libraries >> BUG: Ensure CreateImageIO is concurrent thread safe >> ENH: Mark HDF5 CMake options as internal >> COMP: Add template export declaration for ParametricPath >> COMP: Correct TEMPLATE_EXPLICIT definition in Path module >> ENH: Factor out common code in the TrasformFactoryBase registration >> ENH: Add CMake variable for max transform dimension, defaults 4 >> ENH: Create CMake module to check for private RTTI compatibility >> ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT >> COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT >> BUG: Add explicit instantiate for ObjectToObjectOptimizerBase >> COMP: Use add_definitions for CMake 2.8.9 compatibility >> COMP: Add warning suppression for distcc warning >> ENH: Explicitly instantiate the optimizer base over float >> BUG: Use IsLinear to check if transform is "affine" >> ENH: Remove unneeded includes of random iterator header >> ENH: Improve thread-safety for Generator, and unique New sequence >> ENH: Do not use global random generator >> BUG: Update v3 registration metrics to use local seed >> ENH: Prefer setting local seed over global in tests. >> ENH: Update SWIG to latest 3.0.11 release >> BUG: relax testing parameters for v3 translation registration >> BUG: Restore baseline for debug registration >> >> Caspar Goch (2): >> BUG: Use printable type for RGBA pixel ostream for ITK-3501 >> STYLE: Remove extra space for ITK-3501 >> >> Christina Rossmanith (1): >> DOC: Added more details to the class Doxygen documentation. >> >> Davis Vigneault (2): >> COMP: VCL_DEFINE_SPECIALIZATION not defined >> ENH: Add remote module DVMeshNoise >> >> D?enan Zuki? (27): >> BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) >> ENH: Adding MultipleImageIterator as a remote module >> COMP: enables TBB 4.4 back-end for VTK7's SMP >> COMP: enabling position independent code flag for FFTW >> ENH: adding configuration file for code reformatting tool clang-format >> ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 >> COMP: Fixing -fPIC flag passing with Ninja build system >> ENH: Adding RLEImage as a remote module >> ENH: Updating uncrustify configuration to current git version >> STYLE: better compliance with ITK style >> STYLE: A new option in uncrustify, updating the config file accordingly >> ENH: Adding MorphologicalContourInterpolation as a remote module >> ENH: improving documentation >> BUG: fixing buffer growing endlessly, as reported by Timothee Evain >> BUG: fixing buffer growing endlessly, as reported by Timothee Evain >> STYLE: default uncrustify configuration file is less aggressive >> COMP: Fixing warning >> COMP: VS15 compiler fix >> BUG: casting -9 to unsigned produced unwanted result >> BUG: Ensuring consistency between debug and release >> COMP: Updating LesionSizingToolkit after some recent compile fixes >> COMP: respect option METAIO_USE_NAMESPACE >> ENH: updating version of AnisotropicDiffusionLBR >> ENH: adding UnsharpMaskingImageFilter >> COMP: explicitly cast to output type >> BUG: double call to update would cause empty output image >> ENH: Updating RLEImage remote module. Change-log: >> >> Eugene Prilepin (4): >> ENH: Add the "ITK_USE_GPU" to ITK Config >> BUG: Fix API for set/get "LaplacianImageFilter" object >> ENH: Add support of images types with the 'CovariantVector' pixel type >> ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap >> >> Francois Budin (52): >> ENH: Adding GetArrayFromImage in python itk namespace >> ENH: Adding GetImageFromArray in python itk namespace >> ENH: *_WRAP_* variable per external module >> BUG: ImportImageFilter not responsible of memory management >> ENH: New remote module GenericLabelInterpolator >> DOC: SetNumberOfOutputs had wrong comment >> BUG: lazyAttributes dictionary keys could be over-ridden >> BUG: lazyAttributes dictionary keys could be over-ridden >> BUG: Fix recent update of HDF5 (1.8.17) >> ENH: Update SCIFIO to latest version on 08/23/2016 >> ENH: Addition of the remote module FixedPointInverseDisplacementField >> ENH: Update SCIFIO to latest version on 08/29/2016 >> BUG: Path to commit was relative instead of absolute >> ENH: Path to SetupForDevelopment is relative, not absolute >> BUG: LSMImageIO write function was not checking image dimension >> BUG: LSMImageIO was not checking correctly image dimension >> BUG: Missing associated test data >> BUG: Missing associated test data >> ENH: Bump CMakeLists.txt version to 4.10.1. >> BUG: Quotes are not escaped in configured cmake file >> ENH: Improving API of Graft() in itk::Image >> ENH: Updating ITKGenericLabelInterpolator remote module >> ENH: Update ITKIOTransformDCMTK remote module >> BUG: Factory registration should depend on ITK_BUILD_SHARED >> COMP: Updating DCMTK compilation for Ninja >> ENH: Update version of DCMTK to 3.6.1_20121012 >> ENH: Update SCIFIO to latest version on 10/25/2016 >> BUG: Swig and PCRE do not support space in installation paths >> BUG: exit() call from within piped commands was not exiting the script >> BUG: Typo in folder creation command >> ENH: Only display message for transform registered multiple times in debug >> ENH: Image spacing must be positive >> BUG: Supported extensions by PNG IO were not added in constructor. >> DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. >> ENH: Update SCIFIO to lastest (2016.12.01) >> ENH: FixedPointInverseDisplacementField moved to InsightSoftwareConsortium >> COMP: Remove compilation warnings >> ENH: Improved support of ccache and distcc >> BUG: GPUImage regression due to API change. >> ENH: Update Bridge Numpy (2016.12.05) >> ENH: Update VariationalRegistration to remove warnings during compilation >> ENH: FindPythonLibs does not support both debug and release >> python libraries >> ENH: Update VariationalRegistration >> BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of itk::ImageBase >> BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper >> BUG: Missing ITK_TEMPLATE_EXPORT in templated class >> BUG: Remove linkage warnings on MacOS >> BUG: HDF5 CMake installation directory variable had not been updated >> BUG: Missing include header in AnisotropicDiffusionBLR remote >> module hxx files >> COMP: Silencing unused variable warning in itkTimeStamp >> STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt >> COMP: OS*Barrier functions are deprecated on MacOS 10.12 >> >> GCC-XML Upstream (1): >> ENH: pygccxml v1.8.0 (reduced) >> >> Gert Wollny (1): >> BUG: Relax vnl_complex floating point comparisons for i386 >> >> Gilles Filippini (1): >> BUG: Use NATIVE_HBOOL for encoding HDF5 types. >> >> HDF Group (1): >> ENH: hdf5 1.8.17-r30218 (reduced) >> >> Hans Johnson (23): >> COMP: Use cmake WriteCompilerDetectionHeader >> ENH: Use itk_compiler_detection versions >> COMP: Need ITK_NOEXCEPT_OR_THROW macro. >> COMP: Provide consistent granular C++11 support >> STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT >> STYLE: Prefer to use consistent definitions >> COMP: Improve robustness of identifying the compiler standard used >> BUG: try_compile for AlignAs were always failing >> STYLE: Provide a well documented macro for repeated code >> STYLE: Delete functions in consistent way >> COMP: GPU baseclass ivars need to be protected >> COMP: Remove unnecessary circular dependancy >> COMP: Add long long usage for HDF5 >> COMP: Add long long usage for HDF5 >> STYLE: Prefer static small array to dynamic array >> BUG: Confusing interface for FFTW wisdom files >> STYLE: Output dimension from OutputImageType >> STYLE: Code review style cleanups >> STYLE: Prefer to use ITK AssertOrThrow macros >> ENH: Add OverrideBoundaryCondition logic >> ENH: Provide mechanism for enhanced NIFTI support >> BUG: Use NIFTI sform/qform conventions correctly >> ENH: Remove ambiguity about sform/qform >> >> Hastings Greer (8): >> BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically >> BUG: make itkTriangleHelper instantiable to ease wrapping >> BUG: remove lsqr because of license issues ITK 1160 >> BUG: make itkTriangleHelper instantiable to ease wrapping >> BUG: initialize X to zero in lsmr Solve >> BUG: Labled Point Set Registration: test multiple labels >> BUG: Fix python wrapping of Cuberille remote module >> BUG: Add test demonstrating Python global timestamp issue >> >> Jean-Christophe Fillion-Robin (5): >> STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393 >> STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 >> STYLE: Update MeshIO factories to use RegisterFactoryInternal. See #3393 >> STYLE: MeshIO: Move MeshFileWriterException into its own file. See #3393 >> STYLE: MeshIO: Remove unused include from headers. See #3393 >> >> Johan Andruejol (3): >> ENH: Add missing itkKernelFunctionBase wrapping >> ENH: Add PrincipalComponentsAnalysis remote module >> COMP: Override cannot be used with inline >> >> Jon Haitz Legarreta (216): >> ENH: Improve itkFlatStructutingElement coverage. >> ENH: Improve itkPathToImageFilter class coverage. >> ENH: Improve itkIsolatedWatershedImageFilter coverage. >> ENH: Improve itkLogSigmoidTransferFunction coverage. >> STYLE: Improve itkBSplineTransform doc style. >> ENH: Improve GaborKernelFunctionCoverage. >> PERF: Remove duplicate itkMath include >> STYLE: Move the PrintSelf method to the end >> STYLE: Improve the itkScalarToRGBColormapImageFilter style. >> STYLE: Delete duplicate method documentation >> STYLE: Remove method documentation from implementation file >> STYLE: Improve GACLevelSet classes' style >> STYLE: Improve test style >> ENH: Improve itkGaussianDerivativeImageFilter coverage. >> ENH: Improve the itkScalarToRGBColormapImageFilter coverage >> STYLE: Improve itkScalarToRGBColormap test style >> ENH: Improve GACLSImageFilter classes' coverage >> STYLE: Improve comment style in GACLS tests >> ENH: Improve itkImportImageFilter coverage >> ENH: Improve itkVideoFileReader coverage >> ENH: Improve itkVideoFileWriter coverage >> STYLE: Improve the itkVideoFileWriter style. >> STYLE: Imrpove itkVideoFileReader style. >> ENH: Improve the itkBSplineControlPointImageFunction coverage >> STYLE: Improve the itkIntensityWindowingImageFilter style >> STYLE: Improve the itkIntensityWindowingImageFilter test style >> ENH: Improve ImageToSpatialObjectRegistrationMethod coverage >> STYLE: Improve test style >> ENH: Improve MaskNeighborhoodOperatorImageFilter coverage >> ENH: Improve itkMeshFileWriter coverage >> ENH: Improve RescaleIntensityImageFilter coverage. >> ENH: Improve itkClampImageFilter coverage. >> BUG: Fix ivar type casting in PrintSelf. >> STYLE: Improve MRIBiasFieldCorrectionFilter style. >> ENH: Improve MRIBiasFieldCorrectionFilter coverage. >> ENH: Improve itkIntensityWindowingImageFilter coverage >> BUG: Fix Run-time type information in CSV module classes. >> ENH: Improve the itkHistogram class code coverage. >> DOC: Fix documentation typo. >> STYLE: Improve the ImproveRescaleIntensityImageFilter style. >> PERF: Make the itkVideoFileReader ivars private >> PERF: Make itkVideoFileWriter ivars private >> ENH: Improve coverage for itk::OrientImageFilter. >> STYLE: Improve itk::OrientImageFilter class style. >> ENH: Improve itkCSVNumericObjectFileWriter coverage. >> ENH: Add missing standard class typdefs. >> ENH: Improve itkVoronoiSegmentationImageFilter coverage. >> ENH: Improve itkVoronoiSegmentationImageFilter style. >> STYLE: Improve the MalahanobisDistanceThresholdImageFunction style. >> ENH: Improve coverage for itkMalahanobisDistanceThreshold. >> ENH: Improve itk::MinimumMaximumImageCalculator coverage. >> ENH: Improve itkMinimumMaximumImageCalculator style. >> BUG: Fix type mismatch in test. >> STYLE: Improve itkPolylineMaskImagefilter style. >> ENH: Improve itkPolylineMaskImageFilter coverage. >> ENH: Improve itkFileListVideoStyle. >> ENH: Improve itkLandmarkBasedTransformInitializer coverage. >> ENH: Add baseline image to itkPolylineMaskImageFilter test. >> ENH: Improve coverage for itkBSplineTransformInitializer. >> STYLE: Improve itkBSplineTransformInitializer doc style. >> ENH: Enhance itkBSplineTransformInitializer implementation. >> DOC: Fix typo in method documentation. >> ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. >> STYLE: Improve the itkSimpleContourExtractorImageFilter style. >> ENH: Exercise the class' Get methods. >> ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. >> ENH: Improve style for itkThresholdLabelerImageFilter. >> ENH: Improve itkThresholdLabelerImageFilter coverage. >> ENH: Get internal ImageIO via a const macro. >> ENH: Improve the itkSimpleContourExtractorImageFilter coverage. >> STYLE: Improve the itkMetaArray class style. >> ENH: Improve MetaArrayReader/Writer coverages. >> ENH: Improve the itkCovarianceImageFunction style. >> STYLE: Improve itkVoronoiDiagram2DGenerator style. >> ENH: Improve VoronoiDiagram2DGenerator coverage. >> STYLE: Improve the itkBayesianClassifierImageFilter style. >> STYLE: Improve the itkMetaArrayWriter style. >> ENH: Improve itkCovarianteImageFunction coverage. >> COMP: Fix signed/unsigned int comparison warning. >> DOC: Improve itkGrayscaleDilateImageFilter documentation. >> DOC: Improve documentation for itkGrayscaleErodeImageFilter. >> DOC: Improve ConfigureHistogram method documentation. >> STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. >> BUG: Fix Superclass name in RTTI. >> STYLE: Improve itkGaussianInterpolateImageFunction style. >> ENH: Improve coverage for itkGaussianInterpolateImageFunction. >> ENH: Improve itkBayesianClassifierImageFilter coverage. >> ENH: Add itkBSplineControlPointImageFilter RTTI. >> STYLE: Improve itkBSplinecontrolPointImageFilter style. >> ENH: Improve itkBSplineControlPointImageFilter coverage. >> ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4. >> STYLE: Improve the class implementation file style. >> STYLE: Improve the itkResampleImageFilter style. >> DOC: Fix typo in GetMTime method doc. >> STYLE: Remove out-of-body implementation doc >> ENH: Improve itkResampleImageFilter coverage. >> ENH: Improve itkAbsImageAdaptor and Filter coverage. >> BUG: Fix itkLSMImageIO class' Superclass name. >> ENH: Improve the itkInterpolateImagePointsFilter coverage. >> ENH: Improve itkPowImageFilter coverage. >> BUG: Fix ConvolutionImageFilter RTTI. >> STYLE: Use initialization lists. >> STYLE: Improve BinaryFunctorImageFilter style. >> ENH: Improve itkMinimumImageFilter code coverage. >> BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. >> ENH: Improve MaximumImageFilter coverage. >> BUG: Fix conversion to PixelType conversion. >> COMP: Fix double to unsigned char conversion warning. >> ENH: Improve coverage for itkNormalizeToConstantImageFilter. >> BUG: Fix itkSquaredDifferenceErrorFunction RTTI. >> ENH: Improve itkMeanImageFunctionCoverage. >> ENH: Improve itkSquareImageFilter coverage. >> STYLE: Improve the itkSquaredDifferenceErrorFunction style. >> STYLE: Enhance style for itkNormalizeToConstantImageFilter. >> STYLE: Improve itkMeanImageFunction style. >> ENH: Remove unnecesary call to filter print. >> ENH: Improve itkRegionOfInterestImageFilter coverage. >> STYLE: Improve itkRegionOfInterestImageFilter style. >> STYLE: Improve itkPasteImageFilter style. >> STYLE: Improve itkJoinSeriesImageFilter style. >> BUG: Fix itkPadLabelMapFilter RTTI Superclass. >> COMP: Address std::cout.precision conversion warning. >> ENH: Improve itkBayesianClassifiertImageFilter coverage. >> ENH: Improve itkPadLabelMapFilter coverage. >> ENH: Improve itkJoinSeriesImageFilter coverage. >> ENH: Improve the itkPasteImageFilter coverage. >> ENH: Improve MeanImageFilter coverage. >> COMP: Address std::cout.precision conversion warning. >> ENH: Improve TernaryMagnitudeImageFilter coverage. >> ENH: Improve FFTConvolutionImageFilter coverage. >> DOC: Fix class documentation in ternary magnitude filters. >> ENH: Improve ConstrainedValueDifferenceImageFilter coverage. >> ENH: Improve AndImageFilter coverage. >> ENH: Add baseline test to itkTernaryMagnitudeImageFilter. >> ENH: Use MD5 comparison framework in baseline test. >> ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. >> STYLE: Improve the itkVectorRescaleIntensityImageFilter style. >> ENH: Print missing ivar in filter PrintSelf method. >> ENH: Improve itkComplexToImaginaryFilter coverage. >> ENH: Improve itkComplexToPhaseImageFilter coverage. >> ENH: Improve itkComplexToModulusImageFilter coverage. >> ENH: Improve itkComplexToRealImageFilter coverage. >> ENH: Improve itkVectorResampleImageFilter coverage. >> ENH: Add GetTransform method. >> ENH: Improve itkConstrainedValueAdditionImageFilter coverage. >> ENH: Improve itkModulusImageFilter coverage. >> ENH: Improve itkLog10ImageFilter coverage. >> ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. >> ENH: Improve itkLogImageFilter coverage. >> ENH: Improve itkInvertIntensityImageFilter coverage. >> STYLE: Improve itkInvertIntensityImageFilter style. >> DOC: Add missing doc to itkInvertIntensityImageFilter. >> STYLE: Improve itkIntensityWindowingImageFilter style. >> STYLE: Use initialization lists. >> ENH: Improve itkIntensityWindowingImageFilter coverage. >> ENH: Improve itkNaryMaximumImageFilter coverage. >> COMP: Fix std::precision type casting warning. >> ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. >> STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod style. >> ENH: Remove SmartPointers being explicitly initialized to null. >> STYLE: Improve the itkPointSetToImageRegistrationMethod style. >> ENH: Improve itkPointSetToImageRegistration coverage. >> STYLE: Change the name of the itkPointSetToImageRegistrationMethod test. >> STYLE: Improve itkVectorResampleImageFilter style. >> STYLE: Improve the itkAntiAliasBinaryImageFilter style. >> ENH: Improve trigonometric function filters' coverage. >> STYLE: Remove test names from std::out messages. >> ENH: Improve Boolean Algebra ImageFilters coverage. >> STYLE: Improve the EuclideanDistancePointMetric style. >> ENH: Improve itkSigmoidImageFilter coverage. >> STYLE: Improve itkCropImageFilter style. >> ENH: Improve itkCropImageFilter coverage. >> ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. >> ENH: Improve itkRescaleIntensityImageFilter coverage. >> ENH: Improve the itkMatrixSelectionImageFilter coverage. >> ENH: Improve itkTanImageFilter and Adaptor coverage. >> ENH: Increase itkSqrtImageFilter and Adaptor coverage. >> ENH: Increase itkTernaryOperatorImageFilter coverage. >> ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. >> STYLE: Improve itkScalarImagekmeansImageFilter style. >> STYLE: Conform to TEST_SET_GET_VALUE definition. >> BUG: Fix uninitialized variable due to dynamic analysis defect. >> BUG: Fix uninitialized variable defect reported by valgrind. >> ENH: Improve the itkPointSetToPointSetRegistrationTest. >> ENH: Improve the itkPointSetToImageRegistrationTest. >> ENH: Increas BinaryMagnitudeImageFilter coverage. >> STYLE: Remove test name from std output. >> ENH: Increase MagnitudeImageFilter coverage. >> BUG: Fix uninitialized variable defect reported by valgrind. >> BUG: Fix Superclass name in RTTI. >> STYLE: Improve itkFrustumSpatialFunction style. >> STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction style. >> BUG: Fix Superclass template argument list. >> STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. >> STYLE: Improve the itkCheckerBoardImageFilter class style. >> ENH: Improve the itk::LabelVotingImageFilter coverage. >> ENH: Improve itkCheckerBoardImageFilter coverage. >> STYLE: Improve itk::LabelVotingImageFilter style. >> STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. >> ENH: Add test for itk::FrustumSpatialFunction class. >> ENH: Improve itkConnectedThresholdImageFilter coverage. >> STYLE: Improve itkConnectedThresholdImageFilter style. >> BUG: Fix FrustumSpatialFunction internal precision conversion. >> COMP: Fix implicit conversion warning. >> STYLE: Improve itkThresholdImageFilter style. >> ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. >> BUG: Fix Superclass template argument list. >> ENH: Improve itkUnsharpMaskingImageFilter implementation. >> ENH: Improve the itkUnsharpMaskingImageFilter coverage. >> ENH: Fix UnsharpMaskingImageFilter test inconsistencies. >> BUG: Add missing itkTypeMacro. >> DOC: Document the member variables. >> BUG: Fix the itkImageSource RTTI class name, >> STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style. >> ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. >> STYLE: Improve itkLabelOverlapMeasurementImageFilter style. >> >> KWSys Robot (6): >> KWSys 2016-06-30 (96f06c8e) >> KWSys 2016-10-23 (b630d2f5) >> KWSys 2016-11-03 (37306a1c) >> KWSys 2016-11-08 (2b3e2b1c) >> KWSys 2016-11-09 (18c65411) >> KWSys 2016-11-21 (cb55cf5a) >> >> Maeliss Jallais (1): >> BUG: Add unsigned and signed short to the wrapping of vnl_matrix >> >> Matthew McCormick (85): >> PERF: Simplify HilbertPath numberOfPathVertices computation. >> BUG: CID 1355469 NNetClassifierTest4 unintended integer division. >> BUG: Update Cuberille Remote for version check fix. >> ENH: Bump ITK version to 4.11.0. >> BUG: Fix HDF5ImageIO type information. >> BUG: Fix H5File memory leak in HDF5ImageIO. >> DOC: Collect Francois Budin's contributions in .mailmap >> BUG: Limit WRAP_ITK_MODULES when building externally >> STYLE: Improvements to ResourceProbe report output. >> ENH: Add a useTabs argument to ResourceProbe::Report. >> ENH: Add standard error measure to the ResourceProbe >> ENH: Add itk_python_add_test function. >> BUG: Remove VNL file from subtree merge. >> COMP: Fix wrapping with a space in the Python include path >> BUG: Fix PermuteAxesImageFilter pipeline method visibility >> BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter >> BUG: ResampleImageFilter honor isInside output of the transform method >> COMP: Avoid recursive include of itkMath.h >> COMP: Fix VXL header installation locations >> BUG: ClampImageFilterTest for older GCC, InPlaceOn >> DOC: Add CONTRIBUTING.md file to the top level. >> COMP: Update VariationalRegistration to address Doxygen warnings >> BUG: Compiler detections file installed into ITK build tree location >> COMP: Do not use string(TIMESTAMP. >> COMP: Remove HDF5 -std=c99 for C++ files >> BUG: Do not build HDF5 static library with a shared build >> ENH: Add PerformanceBenchmarking Remote Module >> COMP: Remove duplicate wrappings for ResampleImageFilter >> BUG: Put Python test output files in the build tree >> BUG: Improve HDF5ImageIO::CloseDataSet name >> COMP: Use add_python_test PythonLazyLoadingImage >> COMP: Address missing override it itkFactoryTestLib.cxx >> BUG: Index,Size,Offset constructors present in Python with C++11 >> COMP: Address missing override it itkFactoryTestLib.cxx >> BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT >> ENH: Bump SetupForDevelopment version >> BUG: Add missing ZLib deflate support to HDF5 >> BUG: Address memory leak, remove NumPy build dep in BridgeNumPy >> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >> BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include >> ITK_WRAP_IMAGE_DIMS >> BUG: RichardsonLucyDeconvolutionImageFilter with non-null input >> Image Origin >> BUG: Fix inconsistent Twister start with Initialize(seed) and SetSeed(seed) >> BUG: Do not hard code CMake scripts in HDF5 >> COMP: Workaround Emscripten ITKCommon test build failure >> COMP: Do embed fancy HDF5 libsettings with Emscripten >> COMP: Add missing H5T_patch_vlen_file declaration >> ENH: Bump CastXML to 2016-10-11 master. >> COMP: Workaround Emscripten ITKCommon test build failure >> BUG: Swap CastXML hashes for Mac OSX and Windows >> ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 >> COMP: Fix VNL tests when cross-compiling >> ENH: ExternalData multi-algorithm support >> ENH: ExternalData support for data.kitware.com >> BUG: Install missing H5pubconf.h >> BUG: Use SpacePrecisionType in TileImageFilter >> BUG: Use internal ExternalData_Add_Target >> ENH: Run .sha512, .md5 simultaneous modification pre-commit check >> BUG: Correct CastXML Windows binary >> BUG: Support non-zero Index in LevelSetNeighborhoodExtractor >> ENH: Add ArchiveTestingDataOnGirder.py >> BUG: Correct AtanRegularizationHeavisideStepFunction derivative >> ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh >> BUG: Remove extra HessianToObjectness content links >> ENH: Wrap SpatialFunction float types with ITK_WRAP_float >> BUG: Bump PerformanceBenchmarking to 2016-11-04 >> BUG: itk_python_expression_add_test too many quotes. >> ENH: Wrap VectorImage with complex real pixel types >> ENH: Bump PerformanceBenchmarking to 2016-11-07 >> BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter >> ENH: Create itk_module_add_library macro >> BUG: Update computeCodeCoverageLocally.sh for KWStyle addition >> COMP: Install a newer version of CMake on CircleCI >> ENH: Use GitHub Pages as the first ExternalData resource >> ENH: Add tests to demonstrate OSX dynamic_cast failure >> BUG: Use random seed with for MersenneTwisterRandomVariateGenerator. >> BUG: Enable program global timestamp >> BUG: Set random number seed in Mattes metric test >> BUG: Notify builder that ITK_DYNAMIC_LOADING is required with wrapping >> BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON >> BUG: Set random number seed mutual information metric tests >> BUG: Wrap std::vector< itk.Point > >> BUG: Fix wrapping of LandmarkBasedTransformInitializer >> BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter >> DOC: Add D?enan Zuki? to .mailmap >> >> Max Smolens (4): >> COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field >> BUG: CID-1355438 QuadEdgeTest1 resource leaks >> COMP: CID-1355472 MIRegistrationFunction unused value >> COMP: Fix link errors for VNL template instantiations on Windows >> >> Mayeul Chassagnard (7): >> BUG: Test added and error fixed in HDF5ImageIO >> ENH: Update add_library TO itk_module_add_library >> COMP: Set Policy CMP0023 target_link_libraries for >> Modules/ThirdParty/VNLI... >> BUG: Add ITK_TEMPLATE_EXPORT to template classes >> BUG: Fix errors linked to dyn_cast merge >> BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes >> BUG: dash3win7 dashboard build error unresolved external symbol >> >> Michka Popoff (3): >> ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 >> ENH: Update igenerator.py for pygccxml v1.8.0 >> COMP: Use pygccxml's public API for apply definitions >> >> Pierre Barbier de Reuille (2): >> COMP: Fix function naming error when using FFTWD >> COMP: Fix function naming error when using FFTWD >> >> Sean McBride (1): >> COMP: Bypass HDF5 bugs under TSan >> >> Simon Rit (2): >> COMP: remove C++11 compiler warning for CUDA compilations >> COMP: remove C++11 compiler warning for CUDA compilations >> >> Somesh Kashyap (2): >> BUG: Override TransformCategoryType for >> AzimuthElevationToCartesianTransform >> BUG: -Added test case for itkAzimuthElevationToCartesianTransform >> >> Sumedha Singla (1): >> ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote module >> >> Taylor Braun-Jones (4): >> COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is enabled >> COMP: Fix truncation from double to float warning >> DOC: Fix incorrect itkFactorylessNewMacro documentation >> COMP: Only include the headers for required OpenCV modules >> >> Thien Nguyen (1): >> PERF: SmapsFileParser unnecessary dynamic_cast >> >> VXL Maintainers (4): >> VNL 2016-05-15 (14f97ab4) >> VNL 2016-06-22 (23a93adb) >> VNL 2016-06-29 (d62a2d70) >> VNL 2016-07-06 (acfa62cc) >> >> Vladimir S. FONOV (1): >> COMP: Build against GCC 5.3.1 >> >> Zach Williamson (2): >> ENH: Update Remote Module Tags >> BUG: Fix Python Wrappings in C++11 >> >> Ziv Yaniv (1): >> BUG: Metric sampling percentage accepted values outside (0.0, 1.0]. >> >> >> ----------------------------------------------------- >> Errors or omissions? Please fix them here: >> >> https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFrA54KRvf__4oeT0ymzZg/edit >> _____________________________________ >> Powered by www.kitware.com >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/opensource/opensource.html >> >> Kitware offers ITK Training Courses, for more information visit: >> http://www.kitware.com/products/protraining.php >> >> Please keep messages on-topic and check the ITK FAQ at: >> http://www.itk.org/Wiki/ITK_FAQ >> >> Follow this link to subscribe/unsubscribe: >> http://public.kitware.com/mailman/listinfo/insight-users > From matt.mccormick at kitware.com Mon Jan 16 16:18:18 2017 From: matt.mccormick at kitware.com (Matt McCormick) Date: Mon, 16 Jan 2017 16:18:18 -0500 Subject: [ITK-dev] [ANN] ITK 4.11 Release Candidate 2 is ready for testing! Message-ID: On behalf of the Insight Toolkit community, we are proud to announce that ITK 4.11 release candidate 2 has been tagged and is available for testing! Please take this opportunity to test the new features in the release candidate. To obtain the source code, use the links: https://github.com/Kitware/ITK/archive/v4.11rc02.zip https://github.com/Kitware/ITK/archive/v4.11rc02.tar.gz or git clone https://itk.org/ITK.git cd ITK git checkout -q --detach v4.11rc02 For more details, please see the Git documentation [1]. A few selected highlights for this release: - Remote Modules were added to: perturb mesh vertices with additive gaussian noise, accurately benchmark computational performance, perform principal components analysis of scalar, vector, and mesh vertex data, create a run-length encoded memory compression scheme for itk::Image, run N-D morphological contour interpolation, interpolate multi-label images, iterate over multiple images simultaneously, and compute inverse displacement fields. - NumPy bridge support is now enabled by default with NumPy array views of multi-component images and VNL vectors and matrices. - Internal HDF5 was updated to the latest upstream version along with a number of other third-party libraries. This release introduces a new template class export specification macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated classes to address failing dynamic_cast's and exception catching across binaries on Mac OSX. Bugs were addressed and improvements were made to how the pseudo-random number generator is used. Tests that rely on the random number generator should explicitly set the global seed at start: itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance()->SetSeed( 121212 ); To improve randomness, new instances of the generator start from a different seed; some minor differences in the output of algorithms that uses the generator, like mutual information metrics, should be expected. Additionally, output may change for registration with composite affine transforms; the v4 registration framework now uses corner sampling as opposed to random sampling to estimate their parameter scales. Please test the release candidate and share your experiences on the mailing list, issue tracker, and Gerrit Code Review. An Experimental build, which demonstrates how the test suite performs on your local build system, can be submitted to the dashboard [2] with: mkdir ../ITK-build cd ../ITK-build cmake ../ITK ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit Visual Studio builds must also add ?-C Release? to the ctest command. Notify the mailing list if there are any unexpected failures. Testing your own applications against the RC is also appreciated. Congratulations to the 31 contributors to this release. We would especially like to recognize the new contributors: Hastings Greer, Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss Jallais. The 4.11.0 final release is scheduled for January 23rd. [1] http://www.itk.org/Wiki/ITK/Git [2] http://open.cdash.org/index.php?project=Insight New Features ------------ * Wrapping Improvements - Python GetArrayFromImage() and GetImageFromArray() from ITKBridgeNumPy are directly accessible from the Python itk namespace. - The itk package loads much faster: individual modules are loaded only when required. - Conversion of ITK images from and to NumPy array using Bridge NumPy supports RGB, RGBA, and Vector images. - VNL vectors and VNL matrices can be converted from and to NumPy objects with respectively the new couple of functions GetArrayFromVnlVector()/GetVnlVectorFromArray() and GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() - The global timestamp is used across all ITK Python modules when built statically - Wrap additional classes such as KernelFunctionBase - itk_python_add_test CMake function added for Python script testing in ITK modules * New Remote Modules - DVMeshNoise - Perturbing mesh vertices with additive gaussian noise - http://hdl.handle.net/10380/3567 - PerformanceBenchmarking - Accurate benchmarking of computational performance - http://hdl.handle.net/10380/3557 - PrincipalComponentsAnalysis - Principal components analysis of scalar, vector, and mesh vertex data - http://hdl.handle.net/10380/3386 - RLEImage - Run-length encoded memory compression scheme for itk::Image - http://hdl.handle.net/10380/3562 - MorphologicalContourInterpolation - N-D morphological contour interpolation - http://hdl.handle.net/10380/3563 - GenericLabelInterpolator - A generic interpolator for multi-label images - http://hdl.handle.net/10380/3506 - MultipleImageIterator - Iterate over multiple images simultaneously - http://hdl.handle.net/10380/3455 - FixedPointInverseDisplacementField - Computes inverse displacement field - http://hdl.handle.net/10380/3222 * Core Improvements - New ITK_TEMPLATE_EXPORT for templated classes resolves cross-binary dynamic_cast on Mac OSX - New MersenneTwisterRandomVariateGenerator instances are initialized with different seeds - Use compiler feature detection in CMake for C++11 features, etc. - New CMake macro itk_module_add_library for creating libraries in ITK modules - Improved support for ccache and distcc with CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) - Support for .sha512 ExternalData content links - GitHub Pages and data.kitware.com ExternalData repositories added - GPGPU system support for C++11 - Support of new compilers: Visual Studio 15 and XCode 8.2.1 (clang-800.0.42.1) * Filtering Improvements - HessianToObjectnessMeasure moved out of the ITKReview module - New UnsharpMaskImageFilter for image edge enhancement * IO Improvements - TransformFactory class has been moved to a separate module - Spline order added to BSplineTransform identifier - Improved NIFTI orientation support * Documentation Improvements - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples * Third Party Library Updates - pygccxml updated to v1.8.0 - VNL updated to latest upstream (2016.07.06) - SWIG updated to v3.0.11 - KWSys updated to latest upstream (2016.11.21) - HDF5 updated to v1.8.17 - SCIFIO updated to latest upstream (2016.12.01) - DCMTK updated to 3.6.1_20121012 - CastXML to latest upstream (2016.01.28) * Improved Code Coverage -- we are at 85.44%! - Jon Haitz-Legarreta's extensive code coverage improvements - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ * *Lots* of important bug fixes * And much more! See details in the log below. Changes from v4.11rc01 to v4.11rc02 ----------------------------------- Bradley Lowekamp (5): BUG: Remove unused SimpleImageRegistrationTest baselines ENH: Expose GetNextSeed method in MersenneTwiseter Generator BUG: Add option for fixed seed or wall clock seed for sampling BUG: Use metric random seed in v3 examples BUG: Prefer setting seed at algorithm in "v4" tests. Francois Budin (3): ENH: Update BridgeNumPy to latest version on 2017.01.08 to address ITK-3511 BUG: Extra \$ in doxygen comment BUG: Binary include directory added only if enabled shared Jon Haitz Legarreta (2): DOC: Document itkLabelOverlapMeasuresImageFilter methods. DOC: Fix ITKImageNoise filters' doc TeX errors. Matthew McCormick (1): BUG: Remove invalid ImageRegistration4Test.png.sha512 Max Smolens (1): DOC: Fix itkUnsharpMaskImageFilter documentation typos Simon Rit (1): BUG: ITK-based software was crasing when thread creation failed Changes from v4.10.0 to v4.11rc01 --------------------------------- Bill Lorensen (4): COMP: Restore support for clang 3.0 compiler COMP: Consistent use of ModifiedTimeType ENH: Bump WikiExamples remote module version ENH: Bump WikiExamples version Bradley Lowekamp (57): ENH: Add registered TrasformIO's to exception ENH: Use template or constant for loop stop condition ENH: Updating SWIG version to 3.0.9 COMP: Address VS9 ambiguous std::abs call in Haung calculator COMP: Fix undefined NumericTraits::Zero and One errors with mingw64 BUG: Fix segfault if ~CleanUpObjectFactory called multiple times BUG: Address itkHDF5ImageIO test failures for mingw64 BUG: demonstrate dynamic_cast failure when reading transforms BUG: Address itkHDF5ImageIO test failures for mingw64 ENH: Updating SWIG version to 3.0.10 ENH: Enable CMP0063 New behavior COMP: Enable hidden visibility property with vxl static libraries COMP: Enable hidden visibility property with HDF5 static libraries COMP: Enable hidden visibility property with HDF5 static libraries BUG: Match Add2 function to AddImageFilter documentation ENH: Improve support for std::complex with PowImageFilter ENH: Explicitly mark required files for dependent tests COMP: Bypass XCode 7.3,8 internal compilation error COMP: Address CMake configuration error with itkJPEG2000Test03 property BUG: Correct test's REQUIRED_FILES to only the input. ENH: move HessianToObjectnessMeasure filter out of Review ENH: Separate TransformFactory class into separate module DOC: Add links between similar label to rgb filters ENH: Separate data from function calls COMP: Fix changed Graft method ENH: Reduce template dependencies on CalculateRotationMatrix ENH: Add Functor Accessors to LabelMapToRGB filter BUG: Enable VirtualDomain and FixedTransform in RegMethv4 BUG: Use BSpline Order 3 for 2D in transform factory. ENH: Add spline order to BSplineTransform's string id ENH: Adding initial CircleCi configuration file COMP: Fix float to unsigned integer conversion warnings BUG: Include installed modules in ITK_MODULES_ENABLED COMP: Address CMake error that ITKGPUCommon is not in export COMP: Address wrong library types with VS and shared libraries BUG: Ensure CreateImageIO is concurrent thread safe ENH: Mark HDF5 CMake options as internal COMP: Add template export declaration for ParametricPath COMP: Correct TEMPLATE_EXPLICIT definition in Path module ENH: Factor out common code in the TrasformFactoryBase registration ENH: Add CMake variable for max transform dimension, defaults 4 ENH: Create CMake module to check for private RTTI compatibility ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT BUG: Add explicit instantiate for ObjectToObjectOptimizerBase COMP: Use add_definitions for CMake 2.8.9 compatibility COMP: Add warning suppression for distcc warning ENH: Explicitly instantiate the optimizer base over float BUG: Use IsLinear to check if transform is "affine" ENH: Remove unneeded includes of random iterator header ENH: Improve thread-safety for Generator, and unique New sequence ENH: Do not use global random generator BUG: Update v3 registration metrics to use local seed ENH: Prefer setting local seed over global in tests. ENH: Update SWIG to latest 3.0.11 release BUG: relax testing parameters for v3 translation registration BUG: Restore baseline for debug registration Caspar Goch (2): BUG: Use printable type for RGBA pixel ostream for ITK-3501 STYLE: Remove extra space for ITK-3501 Christina Rossmanith (1): DOC: Added more details to the class Doxygen documentation. Davis Vigneault (2): COMP: VCL_DEFINE_SPECIALIZATION not defined ENH: Add remote module DVMeshNoise D?enan Zuki? (27): BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) ENH: Adding MultipleImageIterator as a remote module COMP: enables TBB 4.4 back-end for VTK7's SMP COMP: enabling position independent code flag for FFTW ENH: adding configuration file for code reformatting tool clang-format ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 COMP: Fixing -fPIC flag passing with Ninja build system ENH: Adding RLEImage as a remote module ENH: Updating uncrustify configuration to current git version STYLE: better compliance with ITK style STYLE: A new option in uncrustify, updating the config file accordingly ENH: Adding MorphologicalContourInterpolation as a remote module ENH: improving documentation BUG: fixing buffer growing endlessly, as reported by Timothee Evain BUG: fixing buffer growing endlessly, as reported by Timothee Evain STYLE: default uncrustify configuration file is less aggressive COMP: Fixing warning COMP: VS15 compiler fix BUG: casting -9 to unsigned produced unwanted result BUG: Ensuring consistency between debug and release COMP: Updating LesionSizingToolkit after some recent compile fixes COMP: respect option METAIO_USE_NAMESPACE ENH: updating version of AnisotropicDiffusionLBR ENH: adding UnsharpMaskingImageFilter COMP: explicitly cast to output type BUG: double call to update would cause empty output image ENH: Updating RLEImage remote module. Change-log: Eugene Prilepin (4): ENH: Add the "ITK_USE_GPU" to ITK Config BUG: Fix API for set/get "LaplacianImageFilter" object ENH: Add support of images types with the 'CovariantVector' pixel type ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap Francois Budin (52): ENH: Adding GetArrayFromImage in python itk namespace ENH: Adding GetImageFromArray in python itk namespace ENH: *_WRAP_* variable per external module BUG: ImportImageFilter not responsible of memory management ENH: New remote module GenericLabelInterpolator DOC: SetNumberOfOutputs had wrong comment BUG: lazyAttributes dictionary keys could be over-ridden BUG: lazyAttributes dictionary keys could be over-ridden BUG: Fix recent update of HDF5 (1.8.17) ENH: Update SCIFIO to latest version on 08/23/2016 ENH: Addition of the remote module FixedPointInverseDisplacementField ENH: Update SCIFIO to latest version on 08/29/2016 BUG: Path to commit was relative instead of absolute ENH: Path to SetupForDevelopment is relative, not absolute BUG: LSMImageIO write function was not checking image dimension BUG: LSMImageIO was not checking correctly image dimension BUG: Missing associated test data BUG: Missing associated test data ENH: Bump CMakeLists.txt version to 4.10.1. BUG: Quotes are not escaped in configured cmake file ENH: Improving API of Graft() in itk::Image ENH: Updating ITKGenericLabelInterpolator remote module ENH: Update ITKIOTransformDCMTK remote module BUG: Factory registration should depend on ITK_BUILD_SHARED COMP: Updating DCMTK compilation for Ninja ENH: Update version of DCMTK to 3.6.1_20121012 ENH: Update SCIFIO to latest version on 10/25/2016 BUG: Swig and PCRE do not support space in installation paths BUG: exit() call from within piped commands was not exiting the script BUG: Typo in folder creation command ENH: Only display message for transform registered multiple times in debug ENH: Image spacing must be positive BUG: Supported extensions by PNG IO were not added in constructor. DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. ENH: Update SCIFIO to lastest (2016.12.01) ENH: FixedPointInverseDisplacementField moved to InsightSoftwareConsortium COMP: Remove compilation warnings ENH: Improved support of ccache and distcc BUG: GPUImage regression due to API change. ENH: Update Bridge Numpy (2016.12.05) ENH: Update VariationalRegistration to remove warnings during compilation ENH: FindPythonLibs does not support both debug and release python libraries ENH: Update VariationalRegistration BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of itk::ImageBase BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper BUG: Missing ITK_TEMPLATE_EXPORT in templated class BUG: Remove linkage warnings on MacOS BUG: HDF5 CMake installation directory variable had not been updated BUG: Missing include header in AnisotropicDiffusionBLR remote module hxx files COMP: Silencing unused variable warning in itkTimeStamp STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt COMP: OS*Barrier functions are deprecated on MacOS 10.12 GCC-XML Upstream (1): ENH: pygccxml v1.8.0 (reduced) Gert Wollny (1): BUG: Relax vnl_complex floating point comparisons for i386 Gilles Filippini (1): BUG: Use NATIVE_HBOOL for encoding HDF5 types. HDF Group (1): ENH: hdf5 1.8.17-r30218 (reduced) Hans Johnson (23): COMP: Use cmake WriteCompilerDetectionHeader ENH: Use itk_compiler_detection versions COMP: Need ITK_NOEXCEPT_OR_THROW macro. COMP: Provide consistent granular C++11 support STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT STYLE: Prefer to use consistent definitions COMP: Improve robustness of identifying the compiler standard used BUG: try_compile for AlignAs were always failing STYLE: Provide a well documented macro for repeated code STYLE: Delete functions in consistent way COMP: GPU baseclass ivars need to be protected COMP: Remove unnecessary circular dependancy COMP: Add long long usage for HDF5 COMP: Add long long usage for HDF5 STYLE: Prefer static small array to dynamic array BUG: Confusing interface for FFTW wisdom files STYLE: Output dimension from OutputImageType STYLE: Code review style cleanups STYLE: Prefer to use ITK AssertOrThrow macros ENH: Add OverrideBoundaryCondition logic ENH: Provide mechanism for enhanced NIFTI support BUG: Use NIFTI sform/qform conventions correctly ENH: Remove ambiguity about sform/qform Hastings Greer (8): BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically BUG: make itkTriangleHelper instantiable to ease wrapping BUG: remove lsqr because of license issues ITK 1160 BUG: make itkTriangleHelper instantiable to ease wrapping BUG: initialize X to zero in lsmr Solve BUG: Labled Point Set Registration: test multiple labels BUG: Fix python wrapping of Cuberille remote module BUG: Add test demonstrating Python global timestamp issue Jean-Christophe Fillion-Robin (5): STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393 STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 STYLE: Update MeshIO factories to use RegisterFactoryInternal. See #3393 STYLE: MeshIO: Move MeshFileWriterException into its own file. See #3393 STYLE: MeshIO: Remove unused include from headers. See #3393 Johan Andruejol (3): ENH: Add missing itkKernelFunctionBase wrapping ENH: Add PrincipalComponentsAnalysis remote module COMP: Override cannot be used with inline Jon Haitz Legarreta (216): ENH: Improve itkFlatStructutingElement coverage. ENH: Improve itkPathToImageFilter class coverage. ENH: Improve itkIsolatedWatershedImageFilter coverage. ENH: Improve itkLogSigmoidTransferFunction coverage. STYLE: Improve itkBSplineTransform doc style. ENH: Improve GaborKernelFunctionCoverage. PERF: Remove duplicate itkMath include STYLE: Move the PrintSelf method to the end STYLE: Improve the itkScalarToRGBColormapImageFilter style. STYLE: Delete duplicate method documentation STYLE: Remove method documentation from implementation file STYLE: Improve GACLevelSet classes' style STYLE: Improve test style ENH: Improve itkGaussianDerivativeImageFilter coverage. ENH: Improve the itkScalarToRGBColormapImageFilter coverage STYLE: Improve itkScalarToRGBColormap test style ENH: Improve GACLSImageFilter classes' coverage STYLE: Improve comment style in GACLS tests ENH: Improve itkImportImageFilter coverage ENH: Improve itkVideoFileReader coverage ENH: Improve itkVideoFileWriter coverage STYLE: Improve the itkVideoFileWriter style. STYLE: Imrpove itkVideoFileReader style. ENH: Improve the itkBSplineControlPointImageFunction coverage STYLE: Improve the itkIntensityWindowingImageFilter style STYLE: Improve the itkIntensityWindowingImageFilter test style ENH: Improve ImageToSpatialObjectRegistrationMethod coverage STYLE: Improve test style ENH: Improve MaskNeighborhoodOperatorImageFilter coverage ENH: Improve itkMeshFileWriter coverage ENH: Improve RescaleIntensityImageFilter coverage. ENH: Improve itkClampImageFilter coverage. BUG: Fix ivar type casting in PrintSelf. STYLE: Improve MRIBiasFieldCorrectionFilter style. ENH: Improve MRIBiasFieldCorrectionFilter coverage. ENH: Improve itkIntensityWindowingImageFilter coverage BUG: Fix Run-time type information in CSV module classes. ENH: Improve the itkHistogram class code coverage. DOC: Fix documentation typo. STYLE: Improve the ImproveRescaleIntensityImageFilter style. PERF: Make the itkVideoFileReader ivars private PERF: Make itkVideoFileWriter ivars private ENH: Improve coverage for itk::OrientImageFilter. STYLE: Improve itk::OrientImageFilter class style. ENH: Improve itkCSVNumericObjectFileWriter coverage. ENH: Add missing standard class typdefs. ENH: Improve itkVoronoiSegmentationImageFilter coverage. ENH: Improve itkVoronoiSegmentationImageFilter style. STYLE: Improve the MalahanobisDistanceThresholdImageFunction style. ENH: Improve coverage for itkMalahanobisDistanceThreshold. ENH: Improve itk::MinimumMaximumImageCalculator coverage. ENH: Improve itkMinimumMaximumImageCalculator style. BUG: Fix type mismatch in test. STYLE: Improve itkPolylineMaskImagefilter style. ENH: Improve itkPolylineMaskImageFilter coverage. ENH: Improve itkFileListVideoStyle. ENH: Improve itkLandmarkBasedTransformInitializer coverage. ENH: Add baseline image to itkPolylineMaskImageFilter test. ENH: Improve coverage for itkBSplineTransformInitializer. STYLE: Improve itkBSplineTransformInitializer doc style. ENH: Enhance itkBSplineTransformInitializer implementation. DOC: Fix typo in method documentation. ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. STYLE: Improve the itkSimpleContourExtractorImageFilter style. ENH: Exercise the class' Get methods. ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. ENH: Improve style for itkThresholdLabelerImageFilter. ENH: Improve itkThresholdLabelerImageFilter coverage. ENH: Get internal ImageIO via a const macro. ENH: Improve the itkSimpleContourExtractorImageFilter coverage. STYLE: Improve the itkMetaArray class style. ENH: Improve MetaArrayReader/Writer coverages. ENH: Improve the itkCovarianceImageFunction style. STYLE: Improve itkVoronoiDiagram2DGenerator style. ENH: Improve VoronoiDiagram2DGenerator coverage. STYLE: Improve the itkBayesianClassifierImageFilter style. STYLE: Improve the itkMetaArrayWriter style. ENH: Improve itkCovarianteImageFunction coverage. COMP: Fix signed/unsigned int comparison warning. DOC: Improve itkGrayscaleDilateImageFilter documentation. DOC: Improve documentation for itkGrayscaleErodeImageFilter. DOC: Improve ConfigureHistogram method documentation. STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. BUG: Fix Superclass name in RTTI. STYLE: Improve itkGaussianInterpolateImageFunction style. ENH: Improve coverage for itkGaussianInterpolateImageFunction. ENH: Improve itkBayesianClassifierImageFilter coverage. ENH: Add itkBSplineControlPointImageFilter RTTI. STYLE: Improve itkBSplinecontrolPointImageFilter style. ENH: Improve itkBSplineControlPointImageFilter coverage. ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4. STYLE: Improve the class implementation file style. STYLE: Improve the itkResampleImageFilter style. DOC: Fix typo in GetMTime method doc. STYLE: Remove out-of-body implementation doc ENH: Improve itkResampleImageFilter coverage. ENH: Improve itkAbsImageAdaptor and Filter coverage. BUG: Fix itkLSMImageIO class' Superclass name. ENH: Improve the itkInterpolateImagePointsFilter coverage. ENH: Improve itkPowImageFilter coverage. BUG: Fix ConvolutionImageFilter RTTI. STYLE: Use initialization lists. STYLE: Improve BinaryFunctorImageFilter style. ENH: Improve itkMinimumImageFilter code coverage. BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. ENH: Improve MaximumImageFilter coverage. BUG: Fix conversion to PixelType conversion. COMP: Fix double to unsigned char conversion warning. ENH: Improve coverage for itkNormalizeToConstantImageFilter. BUG: Fix itkSquaredDifferenceErrorFunction RTTI. ENH: Improve itkMeanImageFunctionCoverage. ENH: Improve itkSquareImageFilter coverage. STYLE: Improve the itkSquaredDifferenceErrorFunction style. STYLE: Enhance style for itkNormalizeToConstantImageFilter. STYLE: Improve itkMeanImageFunction style. ENH: Remove unnecesary call to filter print. ENH: Improve itkRegionOfInterestImageFilter coverage. STYLE: Improve itkRegionOfInterestImageFilter style. STYLE: Improve itkPasteImageFilter style. STYLE: Improve itkJoinSeriesImageFilter style. BUG: Fix itkPadLabelMapFilter RTTI Superclass. COMP: Address std::cout.precision conversion warning. ENH: Improve itkBayesianClassifiertImageFilter coverage. ENH: Improve itkPadLabelMapFilter coverage. ENH: Improve itkJoinSeriesImageFilter coverage. ENH: Improve the itkPasteImageFilter coverage. ENH: Improve MeanImageFilter coverage. COMP: Address std::cout.precision conversion warning. ENH: Improve TernaryMagnitudeImageFilter coverage. ENH: Improve FFTConvolutionImageFilter coverage. DOC: Fix class documentation in ternary magnitude filters. ENH: Improve ConstrainedValueDifferenceImageFilter coverage. ENH: Improve AndImageFilter coverage. ENH: Add baseline test to itkTernaryMagnitudeImageFilter. ENH: Use MD5 comparison framework in baseline test. ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. STYLE: Improve the itkVectorRescaleIntensityImageFilter style. ENH: Print missing ivar in filter PrintSelf method. ENH: Improve itkComplexToImaginaryFilter coverage. ENH: Improve itkComplexToPhaseImageFilter coverage. ENH: Improve itkComplexToModulusImageFilter coverage. ENH: Improve itkComplexToRealImageFilter coverage. ENH: Improve itkVectorResampleImageFilter coverage. ENH: Add GetTransform method. ENH: Improve itkConstrainedValueAdditionImageFilter coverage. ENH: Improve itkModulusImageFilter coverage. ENH: Improve itkLog10ImageFilter coverage. ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. ENH: Improve itkLogImageFilter coverage. ENH: Improve itkInvertIntensityImageFilter coverage. STYLE: Improve itkInvertIntensityImageFilter style. DOC: Add missing doc to itkInvertIntensityImageFilter. STYLE: Improve itkIntensityWindowingImageFilter style. STYLE: Use initialization lists. ENH: Improve itkIntensityWindowingImageFilter coverage. ENH: Improve itkNaryMaximumImageFilter coverage. COMP: Fix std::precision type casting warning. ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod style. ENH: Remove SmartPointers being explicitly initialized to null. STYLE: Improve the itkPointSetToImageRegistrationMethod style. ENH: Improve itkPointSetToImageRegistration coverage. STYLE: Change the name of the itkPointSetToImageRegistrationMethod test. STYLE: Improve itkVectorResampleImageFilter style. STYLE: Improve the itkAntiAliasBinaryImageFilter style. ENH: Improve trigonometric function filters' coverage. STYLE: Remove test names from std::out messages. ENH: Improve Boolean Algebra ImageFilters coverage. STYLE: Improve the EuclideanDistancePointMetric style. ENH: Improve itkSigmoidImageFilter coverage. STYLE: Improve itkCropImageFilter style. ENH: Improve itkCropImageFilter coverage. ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. ENH: Improve itkRescaleIntensityImageFilter coverage. ENH: Improve the itkMatrixSelectionImageFilter coverage. ENH: Improve itkTanImageFilter and Adaptor coverage. ENH: Increase itkSqrtImageFilter and Adaptor coverage. ENH: Increase itkTernaryOperatorImageFilter coverage. ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. STYLE: Improve itkScalarImagekmeansImageFilter style. STYLE: Conform to TEST_SET_GET_VALUE definition. BUG: Fix uninitialized variable due to dynamic analysis defect. BUG: Fix uninitialized variable defect reported by valgrind. ENH: Improve the itkPointSetToPointSetRegistrationTest. ENH: Improve the itkPointSetToImageRegistrationTest. ENH: Increas BinaryMagnitudeImageFilter coverage. STYLE: Remove test name from std output. ENH: Increase MagnitudeImageFilter coverage. BUG: Fix uninitialized variable defect reported by valgrind. BUG: Fix Superclass name in RTTI. STYLE: Improve itkFrustumSpatialFunction style. STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction style. BUG: Fix Superclass template argument list. STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. STYLE: Improve the itkCheckerBoardImageFilter class style. ENH: Improve the itk::LabelVotingImageFilter coverage. ENH: Improve itkCheckerBoardImageFilter coverage. STYLE: Improve itk::LabelVotingImageFilter style. STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. ENH: Add test for itk::FrustumSpatialFunction class. ENH: Improve itkConnectedThresholdImageFilter coverage. STYLE: Improve itkConnectedThresholdImageFilter style. BUG: Fix FrustumSpatialFunction internal precision conversion. COMP: Fix implicit conversion warning. STYLE: Improve itkThresholdImageFilter style. ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. BUG: Fix Superclass template argument list. ENH: Improve itkUnsharpMaskingImageFilter implementation. ENH: Improve the itkUnsharpMaskingImageFilter coverage. ENH: Fix UnsharpMaskingImageFilter test inconsistencies. BUG: Add missing itkTypeMacro. DOC: Document the member variables. BUG: Fix the itkImageSource RTTI class name, STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style. ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. STYLE: Improve itkLabelOverlapMeasurementImageFilter style. KWSys Robot (6): KWSys 2016-06-30 (96f06c8e) KWSys 2016-10-23 (b630d2f5) KWSys 2016-11-03 (37306a1c) KWSys 2016-11-08 (2b3e2b1c) KWSys 2016-11-09 (18c65411) KWSys 2016-11-21 (cb55cf5a) Maeliss Jallais (1): BUG: Add unsigned and signed short to the wrapping of vnl_matrix Matthew McCormick (85): PERF: Simplify HilbertPath numberOfPathVertices computation. BUG: CID 1355469 NNetClassifierTest4 unintended integer division. BUG: Update Cuberille Remote for version check fix. ENH: Bump ITK version to 4.11.0. BUG: Fix HDF5ImageIO type information. BUG: Fix H5File memory leak in HDF5ImageIO. DOC: Collect Francois Budin's contributions in .mailmap BUG: Limit WRAP_ITK_MODULES when building externally STYLE: Improvements to ResourceProbe report output. ENH: Add a useTabs argument to ResourceProbe::Report. ENH: Add standard error measure to the ResourceProbe ENH: Add itk_python_add_test function. BUG: Remove VNL file from subtree merge. COMP: Fix wrapping with a space in the Python include path BUG: Fix PermuteAxesImageFilter pipeline method visibility BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter BUG: ResampleImageFilter honor isInside output of the transform method COMP: Avoid recursive include of itkMath.h COMP: Fix VXL header installation locations BUG: ClampImageFilterTest for older GCC, InPlaceOn DOC: Add CONTRIBUTING.md file to the top level. COMP: Update VariationalRegistration to address Doxygen warnings BUG: Compiler detections file installed into ITK build tree location COMP: Do not use string(TIMESTAMP. COMP: Remove HDF5 -std=c99 for C++ files BUG: Do not build HDF5 static library with a shared build ENH: Add PerformanceBenchmarking Remote Module COMP: Remove duplicate wrappings for ResampleImageFilter BUG: Put Python test output files in the build tree BUG: Improve HDF5ImageIO::CloseDataSet name COMP: Use add_python_test PythonLazyLoadingImage COMP: Address missing override it itkFactoryTestLib.cxx BUG: Index,Size,Offset constructors present in Python with C++11 COMP: Address missing override it itkFactoryTestLib.cxx BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT ENH: Bump SetupForDevelopment version BUG: Add missing ZLib deflate support to HDF5 BUG: Address memory leak, remove NumPy build dep in BridgeNumPy COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include ITK_WRAP_IMAGE_DIMS BUG: RichardsonLucyDeconvolutionImageFilter with non-null input Image Origin BUG: Fix inconsistent Twister start with Initialize(seed) and SetSeed(seed) BUG: Do not hard code CMake scripts in HDF5 COMP: Workaround Emscripten ITKCommon test build failure COMP: Do embed fancy HDF5 libsettings with Emscripten COMP: Add missing H5T_patch_vlen_file declaration ENH: Bump CastXML to 2016-10-11 master. COMP: Workaround Emscripten ITKCommon test build failure BUG: Swap CastXML hashes for Mac OSX and Windows ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 COMP: Fix VNL tests when cross-compiling ENH: ExternalData multi-algorithm support ENH: ExternalData support for data.kitware.com BUG: Install missing H5pubconf.h BUG: Use SpacePrecisionType in TileImageFilter BUG: Use internal ExternalData_Add_Target ENH: Run .sha512, .md5 simultaneous modification pre-commit check BUG: Correct CastXML Windows binary BUG: Support non-zero Index in LevelSetNeighborhoodExtractor ENH: Add ArchiveTestingDataOnGirder.py BUG: Correct AtanRegularizationHeavisideStepFunction derivative ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh BUG: Remove extra HessianToObjectness content links ENH: Wrap SpatialFunction float types with ITK_WRAP_float BUG: Bump PerformanceBenchmarking to 2016-11-04 BUG: itk_python_expression_add_test too many quotes. ENH: Wrap VectorImage with complex real pixel types ENH: Bump PerformanceBenchmarking to 2016-11-07 BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter ENH: Create itk_module_add_library macro BUG: Update computeCodeCoverageLocally.sh for KWStyle addition COMP: Install a newer version of CMake on CircleCI ENH: Use GitHub Pages as the first ExternalData resource ENH: Add tests to demonstrate OSX dynamic_cast failure BUG: Use random seed with for MersenneTwisterRandomVariateGenerator. BUG: Enable program global timestamp BUG: Set random number seed in Mattes metric test BUG: Notify builder that ITK_DYNAMIC_LOADING is required with wrapping BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON BUG: Set random number seed mutual information metric tests BUG: Wrap std::vector< itk.Point > BUG: Fix wrapping of LandmarkBasedTransformInitializer BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter DOC: Add D?enan Zuki? to .mailmap Max Smolens (4): COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field BUG: CID-1355438 QuadEdgeTest1 resource leaks COMP: CID-1355472 MIRegistrationFunction unused value COMP: Fix link errors for VNL template instantiations on Windows Mayeul Chassagnard (7): BUG: Test added and error fixed in HDF5ImageIO ENH: Update add_library TO itk_module_add_library COMP: Set Policy CMP0023 target_link_libraries for Modules/ThirdParty/VNLI... BUG: Add ITK_TEMPLATE_EXPORT to template classes BUG: Fix errors linked to dyn_cast merge BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes BUG: dash3win7 dashboard build error unresolved external symbol Michka Popoff (3): ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 ENH: Update igenerator.py for pygccxml v1.8.0 COMP: Use pygccxml's public API for apply definitions Pierre Barbier de Reuille (2): COMP: Fix function naming error when using FFTWD COMP: Fix function naming error when using FFTWD Sean McBride (1): COMP: Bypass HDF5 bugs under TSan Simon Rit (2): COMP: remove C++11 compiler warning for CUDA compilations COMP: remove C++11 compiler warning for CUDA compilations Somesh Kashyap (2): BUG: Override TransformCategoryType for AzimuthElevationToCartesianTransform BUG: -Added test case for itkAzimuthElevationToCartesianTransform Sumedha Singla (1): ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote module Taylor Braun-Jones (4): COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is enabled COMP: Fix truncation from double to float warning DOC: Fix incorrect itkFactorylessNewMacro documentation COMP: Only include the headers for required OpenCV modules Thien Nguyen (1): PERF: SmapsFileParser unnecessary dynamic_cast VXL Maintainers (4): VNL 2016-05-15 (14f97ab4) VNL 2016-06-22 (23a93adb) VNL 2016-06-29 (d62a2d70) VNL 2016-07-06 (acfa62cc) Vladimir S. FONOV (1): COMP: Build against GCC 5.3.1 Zach Williamson (2): ENH: Update Remote Module Tags BUG: Fix Python Wrappings in C++11 Ziv Yaniv (1): BUG: Metric sampling percentage accepted values outside (0.0, 1.0]. ITK Software Guide Changes ---------------------------------------- Matt McCormick (8): DOC: Move the location for obtaining the software DOC: Remove reference to ITKApps ENH: Bump ITK ExternalProject version to 2016-11-02 master DOC: Document the ITK module registry ENH: Bump ITK ExternalProject version to v4.11rc01 master DOC: Update CMake hyperlinks DOC: Update minimum required CMake version to 2.8.9 DOC: Add section on static and shared libraries. ITK Sphinx Examples Changes ------------------------------------------- Matt McCormick (6): BUG: Use GDCM ITK module name ENH: Rename ReadDICOMSeriesAndWrite3DImage BUG: Add tests for ReadDICOMSeriesAndWrite3DImage ENH: Bump ITK Superbuild version to 2016-09-20 master ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage ENH: Add Python version of CreateAnRGBImage Michka Popoff (5): ENH: Use same Python interpreter as ITK for wrapping tests BUG: Fix ResampleAnImage example (Python3) ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRegionOfAnImage ENH: Add 7 Python examples to Core/Common ENH: Add BoundingBoxOfAPointSet Python example ----------------------------------------------------- Errors or omissions? Please fix them here: https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFrA54KRvf__4oeT0ymzZg/edit From taylor at braun-jones.org Thu Jan 19 12:18:56 2017 From: taylor at braun-jones.org (Taylor Braun-Jones) Date: Thu, 19 Jan 2017 12:18:56 -0500 Subject: [ITK-dev] [ANN] ITK 4.11 Release Candidate 2 is ready for testing! In-Reply-To: References: Message-ID: Any chance the 4.11 release could have at least some preliminary support for VS2017? Right now it crashes the compiler: C:\src\itk\modules\core\common\include\itkPromoteType.h(97): fatal error C1001: An internal error has occurred in the compiler. (compiler file 'msc1.cpp', line 1469) To work around this problem, try simplifying or changing the program near the locations listed above. Please choose the Technical Support command on the Visual C++ Help menu, or open the Technical Support help file for more information Internal Compiler Error in C:\PROGRA~2\MIB055~1\2017\COMMUN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe. You will be prompted to send an error report to Microsoft later. INTERNAL COMPILER ERROR in 'C:\PROGRA~2\MIB055~1\2017\COMMUN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe' Please choose the Technical Support command on the Visual C++ Help menu, or open the Technical Support help file for more information Taylor On Mon, Jan 16, 2017 at 4:18 PM, Matt McCormick wrote: > On behalf of the Insight Toolkit community, we are proud to announce > that ITK 4.11 release candidate 2 has been tagged and is available for > testing! Please take this opportunity to test the new features in the > release candidate. > > > To obtain the source code, use the links: > > > https://github.com/Kitware/ITK/archive/v4.11rc02.zip > https://github.com/Kitware/ITK/archive/v4.11rc02.tar.gz > > or > > git clone https://itk.org/ITK.git > cd ITK > git checkout -q --detach v4.11rc02 > > For more details, please see the Git documentation [1]. > > > A few selected highlights for this release: > > - Remote Modules were added to: perturb mesh vertices with additive > gaussian noise, accurately benchmark computational performance, > perform principal components analysis of scalar, vector, and mesh > vertex data, create a run-length encoded memory compression scheme for > itk::Image, run N-D morphological contour interpolation, interpolate > multi-label images, iterate over multiple images simultaneously, and > compute inverse displacement fields. > - NumPy bridge support is now enabled by default with NumPy array > views of multi-component images and VNL vectors and matrices. > - Internal HDF5 was updated to the latest upstream version along > with a number of other third-party libraries. > > > This release introduces a new template class export specification > macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated > classes to address failing dynamic_cast's and exception catching > across binaries on Mac OSX. > > Bugs were addressed and improvements were made to how the > pseudo-random number generator is used. Tests that rely on the random > number generator should explicitly set the global seed at start: > > itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance()-> > SetSeed( > 121212 ); > > To improve randomness, new instances of the generator start from a > different seed; some minor differences in the output of algorithms > that uses the generator, like mutual information metrics, should be > expected. > > Additionally, output may change for registration with composite affine > transforms; the v4 registration framework now uses corner sampling as > opposed to random sampling to estimate their parameter scales. > > > Please test the release candidate and share your experiences on the > mailing list, issue tracker, and Gerrit Code Review. > > > An Experimental build, which demonstrates how the test suite performs > on your local build system, can be submitted to the dashboard [2] > with: > > mkdir ../ITK-build > cd ../ITK-build > cmake ../ITK > ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit > > Visual Studio builds must also add ?-C Release? to the ctest command. > > Notify the mailing list if there are any unexpected failures. Testing > your own applications against the RC is also appreciated. > > > Congratulations to the 31 contributors to this release. We would > especially like to recognize the new contributors: Hastings Greer, > Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, > Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss > Jallais. > > > The 4.11.0 final release is scheduled for January 23rd. > > > [1] http://www.itk.org/Wiki/ITK/Git > > [2] http://open.cdash.org/index.php?project=Insight > > > New Features > ------------ > > * Wrapping Improvements > - Python GetArrayFromImage() and GetImageFromArray() from > ITKBridgeNumPy are directly accessible from the Python itk namespace. > - The itk package loads much faster: individual modules are loaded > only when required. > - Conversion of ITK images from and to NumPy array using Bridge > NumPy supports RGB, RGBA, and Vector images. > - VNL vectors and VNL matrices can be converted from and to NumPy > objects with respectively the new couple of functions > GetArrayFromVnlVector()/GetVnlVectorFromArray() and > GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() > - The global timestamp is used across all ITK Python modules when > built statically > - Wrap additional classes such as KernelFunctionBase > - itk_python_add_test CMake function added for Python script testing > in ITK modules > > * New Remote Modules > - DVMeshNoise > - Perturbing mesh vertices with additive gaussian noise > - http://hdl.handle.net/10380/3567 > - PerformanceBenchmarking > - Accurate benchmarking of computational performance > - http://hdl.handle.net/10380/3557 > - PrincipalComponentsAnalysis > - Principal components analysis of scalar, vector, and mesh vertex data > - http://hdl.handle.net/10380/3386 > - RLEImage > - Run-length encoded memory compression scheme for itk::Image > - http://hdl.handle.net/10380/3562 > - MorphologicalContourInterpolation > - N-D morphological contour interpolation > - http://hdl.handle.net/10380/3563 > - GenericLabelInterpolator > - A generic interpolator for multi-label images > - http://hdl.handle.net/10380/3506 > - MultipleImageIterator > - Iterate over multiple images simultaneously > - http://hdl.handle.net/10380/3455 > - FixedPointInverseDisplacementField > - Computes inverse displacement field > - http://hdl.handle.net/10380/3222 > > * Core Improvements > - New ITK_TEMPLATE_EXPORT for templated classes resolves > cross-binary dynamic_cast on Mac OSX > - New MersenneTwisterRandomVariateGenerator instances are > initialized with different seeds > - Use compiler feature detection in CMake for C++11 features, etc. > - New CMake macro itk_module_add_library for creating libraries in ITK > modules > - Improved support for ccache and distcc with > CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) > - Support for .sha512 ExternalData content links > - GitHub Pages and data.kitware.com ExternalData repositories added > - GPGPU system support for C++11 > - Support of new compilers: Visual Studio 15 and XCode 8.2.1 > (clang-800.0.42.1) > > * Filtering Improvements > - HessianToObjectnessMeasure moved out of the ITKReview module > - New UnsharpMaskImageFilter for image edge enhancement > > * IO Improvements > - TransformFactory class has been moved to a separate module > - Spline order added to BSplineTransform identifier > - Improved NIFTI orientation support > > * Documentation Improvements > - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples > > * Third Party Library Updates > - pygccxml updated to v1.8.0 > - VNL updated to latest upstream (2016.07.06) > - SWIG updated to v3.0.11 > - KWSys updated to latest upstream (2016.11.21) > - HDF5 updated to v1.8.17 > - SCIFIO updated to latest upstream (2016.12.01) > - DCMTK updated to 3.6.1_20121012 > - CastXML to latest upstream (2016.01.28) > > * Improved Code Coverage -- we are at 85.44%! > - Jon Haitz-Legarreta's extensive code coverage improvements > - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ > > * *Lots* of important bug fixes > > * And much more! See details in the log below. > > > Changes from v4.11rc01 to v4.11rc02 > ----------------------------------- > > Bradley Lowekamp (5): > BUG: Remove unused SimpleImageRegistrationTest baselines > ENH: Expose GetNextSeed method in MersenneTwiseter Generator > BUG: Add option for fixed seed or wall clock seed for sampling > BUG: Use metric random seed in v3 examples > BUG: Prefer setting seed at algorithm in "v4" tests. > > Francois Budin (3): > ENH: Update BridgeNumPy to latest version on 2017.01.08 to address > ITK-3511 > BUG: Extra \$ in doxygen comment > BUG: Binary include directory added only if enabled shared > > Jon Haitz Legarreta (2): > DOC: Document itkLabelOverlapMeasuresImageFilter methods. > DOC: Fix ITKImageNoise filters' doc TeX errors. > > Matthew McCormick (1): > BUG: Remove invalid ImageRegistration4Test.png.sha512 > > Max Smolens (1): > DOC: Fix itkUnsharpMaskImageFilter documentation typos > > Simon Rit (1): > BUG: ITK-based software was crasing when thread creation failed > > > Changes from v4.10.0 to v4.11rc01 > --------------------------------- > > Bill Lorensen (4): > COMP: Restore support for clang 3.0 compiler > COMP: Consistent use of ModifiedTimeType > ENH: Bump WikiExamples remote module version > ENH: Bump WikiExamples version > > Bradley Lowekamp (57): > ENH: Add registered TrasformIO's to exception > ENH: Use template or constant for loop stop condition > ENH: Updating SWIG version to 3.0.9 > COMP: Address VS9 ambiguous std::abs call in Haung calculator > COMP: Fix undefined NumericTraits::Zero and One errors with mingw64 > BUG: Fix segfault if ~CleanUpObjectFactory called multiple times > BUG: Address itkHDF5ImageIO test failures for mingw64 > BUG: demonstrate dynamic_cast failure when reading transforms > BUG: Address itkHDF5ImageIO test failures for mingw64 > ENH: Updating SWIG version to 3.0.10 > ENH: Enable CMP0063 New behavior > COMP: Enable hidden visibility property with vxl static libraries > COMP: Enable hidden visibility property with HDF5 static libraries > COMP: Enable hidden visibility property with HDF5 static libraries > BUG: Match Add2 function to AddImageFilter documentation > ENH: Improve support for std::complex with PowImageFilter > ENH: Explicitly mark required files for dependent tests > COMP: Bypass XCode 7.3,8 internal compilation error > COMP: Address CMake configuration error with itkJPEG2000Test03 > property > BUG: Correct test's REQUIRED_FILES to only the input. > ENH: move HessianToObjectnessMeasure filter out of Review > ENH: Separate TransformFactory class into separate module > DOC: Add links between similar label to rgb filters > ENH: Separate data from function calls > COMP: Fix changed Graft method > ENH: Reduce template dependencies on CalculateRotationMatrix > ENH: Add Functor Accessors to LabelMapToRGB filter > BUG: Enable VirtualDomain and FixedTransform in RegMethv4 > BUG: Use BSpline Order 3 for 2D in transform factory. > ENH: Add spline order to BSplineTransform's string id > ENH: Adding initial CircleCi configuration file > COMP: Fix float to unsigned integer conversion warnings > BUG: Include installed modules in ITK_MODULES_ENABLED > COMP: Address CMake error that ITKGPUCommon is not in export > COMP: Address wrong library types with VS and shared libraries > BUG: Ensure CreateImageIO is concurrent thread safe > ENH: Mark HDF5 CMake options as internal > COMP: Add template export declaration for ParametricPath > COMP: Correct TEMPLATE_EXPLICIT definition in Path module > ENH: Factor out common code in the TrasformFactoryBase registration > ENH: Add CMake variable for max transform dimension, defaults 4 > ENH: Create CMake module to check for private RTTI compatibility > ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT > COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT > BUG: Add explicit instantiate for ObjectToObjectOptimizerBase > COMP: Use add_definitions for CMake 2.8.9 compatibility > COMP: Add warning suppression for distcc warning > ENH: Explicitly instantiate the optimizer base over float > BUG: Use IsLinear to check if transform is "affine" > ENH: Remove unneeded includes of random iterator header > ENH: Improve thread-safety for Generator, and unique New sequence > ENH: Do not use global random generator > BUG: Update v3 registration metrics to use local seed > ENH: Prefer setting local seed over global in tests. > ENH: Update SWIG to latest 3.0.11 release > BUG: relax testing parameters for v3 translation registration > BUG: Restore baseline for debug registration > > Caspar Goch (2): > BUG: Use printable type for RGBA pixel ostream for ITK-3501 > STYLE: Remove extra space for ITK-3501 > > Christina Rossmanith (1): > DOC: Added more details to the class Doxygen documentation. > > Davis Vigneault (2): > COMP: VCL_DEFINE_SPECIALIZATION not defined > ENH: Add remote module DVMeshNoise > > D?enan Zuki? (27): > BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) > ENH: Adding MultipleImageIterator as a remote module > COMP: enables TBB 4.4 back-end for VTK7's SMP > COMP: enabling position independent code flag for FFTW > ENH: adding configuration file for code reformatting tool clang-format > ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 > COMP: Fixing -fPIC flag passing with Ninja build system > ENH: Adding RLEImage as a remote module > ENH: Updating uncrustify configuration to current git version > STYLE: better compliance with ITK style > STYLE: A new option in uncrustify, updating the config file > accordingly > ENH: Adding MorphologicalContourInterpolation as a remote module > ENH: improving documentation > BUG: fixing buffer growing endlessly, as reported by Timothee Evain > BUG: fixing buffer growing endlessly, as reported by Timothee Evain > STYLE: default uncrustify configuration file is less aggressive > COMP: Fixing warning > COMP: VS15 compiler fix > BUG: casting -9 to unsigned produced unwanted result > BUG: Ensuring consistency between debug and release > COMP: Updating LesionSizingToolkit after some recent compile fixes > COMP: respect option METAIO_USE_NAMESPACE > ENH: updating version of AnisotropicDiffusionLBR > ENH: adding UnsharpMaskingImageFilter > COMP: explicitly cast to output type > BUG: double call to update would cause empty output image > ENH: Updating RLEImage remote module. Change-log: > > Eugene Prilepin (4): > ENH: Add the "ITK_USE_GPU" to ITK Config > BUG: Fix API for set/get "LaplacianImageFilter" object > ENH: Add support of images types with the 'CovariantVector' pixel type > ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap > > Francois Budin (52): > ENH: Adding GetArrayFromImage in python itk namespace > ENH: Adding GetImageFromArray in python itk namespace > ENH: *_WRAP_* variable per external module > BUG: ImportImageFilter not responsible of memory management > ENH: New remote module GenericLabelInterpolator > DOC: SetNumberOfOutputs had wrong comment > BUG: lazyAttributes dictionary keys could be over-ridden > BUG: lazyAttributes dictionary keys could be over-ridden > BUG: Fix recent update of HDF5 (1.8.17) > ENH: Update SCIFIO to latest version on 08/23/2016 > ENH: Addition of the remote module FixedPointInverseDisplacementField > ENH: Update SCIFIO to latest version on 08/29/2016 > BUG: Path to commit was relative instead of absolute > ENH: Path to SetupForDevelopment is relative, not absolute > BUG: LSMImageIO write function was not checking image dimension > BUG: LSMImageIO was not checking correctly image dimension > BUG: Missing associated test data > BUG: Missing associated test data > ENH: Bump CMakeLists.txt version to 4.10.1. > BUG: Quotes are not escaped in configured cmake file > ENH: Improving API of Graft() in itk::Image > ENH: Updating ITKGenericLabelInterpolator remote module > ENH: Update ITKIOTransformDCMTK remote module > BUG: Factory registration should depend on ITK_BUILD_SHARED > COMP: Updating DCMTK compilation for Ninja > ENH: Update version of DCMTK to 3.6.1_20121012 > ENH: Update SCIFIO to latest version on 10/25/2016 > BUG: Swig and PCRE do not support space in installation paths > BUG: exit() call from within piped commands was not exiting the script > BUG: Typo in folder creation command > ENH: Only display message for transform registered multiple times in > debug > ENH: Image spacing must be positive > BUG: Supported extensions by PNG IO were not added in constructor. > DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. > ENH: Update SCIFIO to lastest (2016.12.01) > ENH: FixedPointInverseDisplacementField moved to > InsightSoftwareConsortium > COMP: Remove compilation warnings > ENH: Improved support of ccache and distcc > BUG: GPUImage regression due to API change. > ENH: Update Bridge Numpy (2016.12.05) > ENH: Update VariationalRegistration to remove warnings during > compilation > ENH: FindPythonLibs does not support both debug and release > python libraries > ENH: Update VariationalRegistration > BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of > itk::ImageBase > BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper > BUG: Missing ITK_TEMPLATE_EXPORT in templated class > BUG: Remove linkage warnings on MacOS > BUG: HDF5 CMake installation directory variable had not been updated > BUG: Missing include header in AnisotropicDiffusionBLR remote > module hxx files > COMP: Silencing unused variable warning in itkTimeStamp > STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt > COMP: OS*Barrier functions are deprecated on MacOS 10.12 > > GCC-XML Upstream (1): > ENH: pygccxml v1.8.0 (reduced) > > Gert Wollny (1): > BUG: Relax vnl_complex floating point comparisons for i386 > > Gilles Filippini (1): > BUG: Use NATIVE_HBOOL for encoding HDF5 types. > > HDF Group (1): > ENH: hdf5 1.8.17-r30218 (reduced) > > Hans Johnson (23): > COMP: Use cmake WriteCompilerDetectionHeader > ENH: Use itk_compiler_detection versions > COMP: Need ITK_NOEXCEPT_OR_THROW macro. > COMP: Provide consistent granular C++11 support > STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT > STYLE: Prefer to use consistent definitions > COMP: Improve robustness of identifying the compiler standard used > BUG: try_compile for AlignAs were always failing > STYLE: Provide a well documented macro for repeated code > STYLE: Delete functions in consistent way > COMP: GPU baseclass ivars need to be protected > COMP: Remove unnecessary circular dependancy > COMP: Add long long usage for HDF5 > COMP: Add long long usage for HDF5 > STYLE: Prefer static small array to dynamic array > BUG: Confusing interface for FFTW wisdom files > STYLE: Output dimension from OutputImageType > STYLE: Code review style cleanups > STYLE: Prefer to use ITK AssertOrThrow macros > ENH: Add OverrideBoundaryCondition logic > ENH: Provide mechanism for enhanced NIFTI support > BUG: Use NIFTI sform/qform conventions correctly > ENH: Remove ambiguity about sform/qform > > Hastings Greer (8): > BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically > BUG: make itkTriangleHelper instantiable to ease wrapping > BUG: remove lsqr because of license issues ITK 1160 > BUG: make itkTriangleHelper instantiable to ease wrapping > BUG: initialize X to zero in lsmr Solve > BUG: Labled Point Set Registration: test multiple labels > BUG: Fix python wrapping of Cuberille remote module > BUG: Add test demonstrating Python global timestamp issue > > Jean-Christophe Fillion-Robin (5): > STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393 > STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 > STYLE: Update MeshIO factories to use RegisterFactoryInternal. See > #3393 > STYLE: MeshIO: Move MeshFileWriterException into its own file. See > #3393 > STYLE: MeshIO: Remove unused include from headers. See #3393 > > Johan Andruejol (3): > ENH: Add missing itkKernelFunctionBase wrapping > ENH: Add PrincipalComponentsAnalysis remote module > COMP: Override cannot be used with inline > > Jon Haitz Legarreta (216): > ENH: Improve itkFlatStructutingElement coverage. > ENH: Improve itkPathToImageFilter class coverage. > ENH: Improve itkIsolatedWatershedImageFilter coverage. > ENH: Improve itkLogSigmoidTransferFunction coverage. > STYLE: Improve itkBSplineTransform doc style. > ENH: Improve GaborKernelFunctionCoverage. > PERF: Remove duplicate itkMath include > STYLE: Move the PrintSelf method to the end > STYLE: Improve the itkScalarToRGBColormapImageFilter style. > STYLE: Delete duplicate method documentation > STYLE: Remove method documentation from implementation file > STYLE: Improve GACLevelSet classes' style > STYLE: Improve test style > ENH: Improve itkGaussianDerivativeImageFilter coverage. > ENH: Improve the itkScalarToRGBColormapImageFilter coverage > STYLE: Improve itkScalarToRGBColormap test style > ENH: Improve GACLSImageFilter classes' coverage > STYLE: Improve comment style in GACLS tests > ENH: Improve itkImportImageFilter coverage > ENH: Improve itkVideoFileReader coverage > ENH: Improve itkVideoFileWriter coverage > STYLE: Improve the itkVideoFileWriter style. > STYLE: Imrpove itkVideoFileReader style. > ENH: Improve the itkBSplineControlPointImageFunction coverage > STYLE: Improve the itkIntensityWindowingImageFilter style > STYLE: Improve the itkIntensityWindowingImageFilter test style > ENH: Improve ImageToSpatialObjectRegistrationMethod coverage > STYLE: Improve test style > ENH: Improve MaskNeighborhoodOperatorImageFilter coverage > ENH: Improve itkMeshFileWriter coverage > ENH: Improve RescaleIntensityImageFilter coverage. > ENH: Improve itkClampImageFilter coverage. > BUG: Fix ivar type casting in PrintSelf. > STYLE: Improve MRIBiasFieldCorrectionFilter style. > ENH: Improve MRIBiasFieldCorrectionFilter coverage. > ENH: Improve itkIntensityWindowingImageFilter coverage > BUG: Fix Run-time type information in CSV module classes. > ENH: Improve the itkHistogram class code coverage. > DOC: Fix documentation typo. > STYLE: Improve the ImproveRescaleIntensityImageFilter style. > PERF: Make the itkVideoFileReader ivars private > PERF: Make itkVideoFileWriter ivars private > ENH: Improve coverage for itk::OrientImageFilter. > STYLE: Improve itk::OrientImageFilter class style. > ENH: Improve itkCSVNumericObjectFileWriter coverage. > ENH: Add missing standard class typdefs. > ENH: Improve itkVoronoiSegmentationImageFilter coverage. > ENH: Improve itkVoronoiSegmentationImageFilter style. > STYLE: Improve the MalahanobisDistanceThresholdImageFunction style. > ENH: Improve coverage for itkMalahanobisDistanceThreshold. > ENH: Improve itk::MinimumMaximumImageCalculator coverage. > ENH: Improve itkMinimumMaximumImageCalculator style. > BUG: Fix type mismatch in test. > STYLE: Improve itkPolylineMaskImagefilter style. > ENH: Improve itkPolylineMaskImageFilter coverage. > ENH: Improve itkFileListVideoStyle. > ENH: Improve itkLandmarkBasedTransformInitializer coverage. > ENH: Add baseline image to itkPolylineMaskImageFilter test. > ENH: Improve coverage for itkBSplineTransformInitializer. > STYLE: Improve itkBSplineTransformInitializer doc style. > ENH: Enhance itkBSplineTransformInitializer implementation. > DOC: Fix typo in method documentation. > ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. > STYLE: Improve the itkSimpleContourExtractorImageFilter style. > ENH: Exercise the class' Get methods. > ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. > ENH: Improve style for itkThresholdLabelerImageFilter. > ENH: Improve itkThresholdLabelerImageFilter coverage. > ENH: Get internal ImageIO via a const macro. > ENH: Improve the itkSimpleContourExtractorImageFilter coverage. > STYLE: Improve the itkMetaArray class style. > ENH: Improve MetaArrayReader/Writer coverages. > ENH: Improve the itkCovarianceImageFunction style. > STYLE: Improve itkVoronoiDiagram2DGenerator style. > ENH: Improve VoronoiDiagram2DGenerator coverage. > STYLE: Improve the itkBayesianClassifierImageFilter style. > STYLE: Improve the itkMetaArrayWriter style. > ENH: Improve itkCovarianteImageFunction coverage. > COMP: Fix signed/unsigned int comparison warning. > DOC: Improve itkGrayscaleDilateImageFilter documentation. > DOC: Improve documentation for itkGrayscaleErodeImageFilter. > DOC: Improve ConfigureHistogram method documentation. > STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. > BUG: Fix Superclass name in RTTI. > STYLE: Improve itkGaussianInterpolateImageFunction style. > ENH: Improve coverage for itkGaussianInterpolateImageFunction. > ENH: Improve itkBayesianClassifierImageFilter coverage. > ENH: Add itkBSplineControlPointImageFilter RTTI. > STYLE: Improve itkBSplinecontrolPointImageFilter style. > ENH: Improve itkBSplineControlPointImageFilter coverage. > ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4. > STYLE: Improve the class implementation file style. > STYLE: Improve the itkResampleImageFilter style. > DOC: Fix typo in GetMTime method doc. > STYLE: Remove out-of-body implementation doc > ENH: Improve itkResampleImageFilter coverage. > ENH: Improve itkAbsImageAdaptor and Filter coverage. > BUG: Fix itkLSMImageIO class' Superclass name. > ENH: Improve the itkInterpolateImagePointsFilter coverage. > ENH: Improve itkPowImageFilter coverage. > BUG: Fix ConvolutionImageFilter RTTI. > STYLE: Use initialization lists. > STYLE: Improve BinaryFunctorImageFilter style. > ENH: Improve itkMinimumImageFilter code coverage. > BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. > ENH: Improve MaximumImageFilter coverage. > BUG: Fix conversion to PixelType conversion. > COMP: Fix double to unsigned char conversion warning. > ENH: Improve coverage for itkNormalizeToConstantImageFilter. > BUG: Fix itkSquaredDifferenceErrorFunction RTTI. > ENH: Improve itkMeanImageFunctionCoverage. > ENH: Improve itkSquareImageFilter coverage. > STYLE: Improve the itkSquaredDifferenceErrorFunction style. > STYLE: Enhance style for itkNormalizeToConstantImageFilter. > STYLE: Improve itkMeanImageFunction style. > ENH: Remove unnecesary call to filter print. > ENH: Improve itkRegionOfInterestImageFilter coverage. > STYLE: Improve itkRegionOfInterestImageFilter style. > STYLE: Improve itkPasteImageFilter style. > STYLE: Improve itkJoinSeriesImageFilter style. > BUG: Fix itkPadLabelMapFilter RTTI Superclass. > COMP: Address std::cout.precision conversion warning. > ENH: Improve itkBayesianClassifiertImageFilter coverage. > ENH: Improve itkPadLabelMapFilter coverage. > ENH: Improve itkJoinSeriesImageFilter coverage. > ENH: Improve the itkPasteImageFilter coverage. > ENH: Improve MeanImageFilter coverage. > COMP: Address std::cout.precision conversion warning. > ENH: Improve TernaryMagnitudeImageFilter coverage. > ENH: Improve FFTConvolutionImageFilter coverage. > DOC: Fix class documentation in ternary magnitude filters. > ENH: Improve ConstrainedValueDifferenceImageFilter coverage. > ENH: Improve AndImageFilter coverage. > ENH: Add baseline test to itkTernaryMagnitudeImageFilter. > ENH: Use MD5 comparison framework in baseline test. > ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. > STYLE: Improve the itkVectorRescaleIntensityImageFilter style. > ENH: Print missing ivar in filter PrintSelf method. > ENH: Improve itkComplexToImaginaryFilter coverage. > ENH: Improve itkComplexToPhaseImageFilter coverage. > ENH: Improve itkComplexToModulusImageFilter coverage. > ENH: Improve itkComplexToRealImageFilter coverage. > ENH: Improve itkVectorResampleImageFilter coverage. > ENH: Add GetTransform method. > ENH: Improve itkConstrainedValueAdditionImageFilter coverage. > ENH: Improve itkModulusImageFilter coverage. > ENH: Improve itkLog10ImageFilter coverage. > ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. > ENH: Improve itkLogImageFilter coverage. > ENH: Improve itkInvertIntensityImageFilter coverage. > STYLE: Improve itkInvertIntensityImageFilter style. > DOC: Add missing doc to itkInvertIntensityImageFilter. > STYLE: Improve itkIntensityWindowingImageFilter style. > STYLE: Use initialization lists. > ENH: Improve itkIntensityWindowingImageFilter coverage. > ENH: Improve itkNaryMaximumImageFilter coverage. > COMP: Fix std::precision type casting warning. > ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. > STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod > style. > ENH: Remove SmartPointers being explicitly initialized to null. > STYLE: Improve the itkPointSetToImageRegistrationMethod style. > ENH: Improve itkPointSetToImageRegistration coverage. > STYLE: Change the name of the itkPointSetToImageRegistrationMethod > test. > STYLE: Improve itkVectorResampleImageFilter style. > STYLE: Improve the itkAntiAliasBinaryImageFilter style. > ENH: Improve trigonometric function filters' coverage. > STYLE: Remove test names from std::out messages. > ENH: Improve Boolean Algebra ImageFilters coverage. > STYLE: Improve the EuclideanDistancePointMetric style. > ENH: Improve itkSigmoidImageFilter coverage. > STYLE: Improve itkCropImageFilter style. > ENH: Improve itkCropImageFilter coverage. > ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. > ENH: Improve itkRescaleIntensityImageFilter coverage. > ENH: Improve the itkMatrixSelectionImageFilter coverage. > ENH: Improve itkTanImageFilter and Adaptor coverage. > ENH: Increase itkSqrtImageFilter and Adaptor coverage. > ENH: Increase itkTernaryOperatorImageFilter coverage. > ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. > STYLE: Improve itkScalarImagekmeansImageFilter style. > STYLE: Conform to TEST_SET_GET_VALUE definition. > BUG: Fix uninitialized variable due to dynamic analysis defect. > BUG: Fix uninitialized variable defect reported by valgrind. > ENH: Improve the itkPointSetToPointSetRegistrationTest. > ENH: Improve the itkPointSetToImageRegistrationTest. > ENH: Increas BinaryMagnitudeImageFilter coverage. > STYLE: Remove test name from std output. > ENH: Increase MagnitudeImageFilter coverage. > BUG: Fix uninitialized variable defect reported by valgrind. > BUG: Fix Superclass name in RTTI. > STYLE: Improve itkFrustumSpatialFunction style. > STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction > style. > BUG: Fix Superclass template argument list. > STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. > STYLE: Improve the itkCheckerBoardImageFilter class style. > ENH: Improve the itk::LabelVotingImageFilter coverage. > ENH: Improve itkCheckerBoardImageFilter coverage. > STYLE: Improve itk::LabelVotingImageFilter style. > STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. > ENH: Add test for itk::FrustumSpatialFunction class. > ENH: Improve itkConnectedThresholdImageFilter coverage. > STYLE: Improve itkConnectedThresholdImageFilter style. > BUG: Fix FrustumSpatialFunction internal precision conversion. > COMP: Fix implicit conversion warning. > STYLE: Improve itkThresholdImageFilter style. > ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. > BUG: Fix Superclass template argument list. > ENH: Improve itkUnsharpMaskingImageFilter implementation. > ENH: Improve the itkUnsharpMaskingImageFilter coverage. > ENH: Fix UnsharpMaskingImageFilter test inconsistencies. > BUG: Add missing itkTypeMacro. > DOC: Document the member variables. > BUG: Fix the itkImageSource RTTI class name, > STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style. > ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. > STYLE: Improve itkLabelOverlapMeasurementImageFilter style. > > KWSys Robot (6): > KWSys 2016-06-30 (96f06c8e) > KWSys 2016-10-23 (b630d2f5) > KWSys 2016-11-03 (37306a1c) > KWSys 2016-11-08 (2b3e2b1c) > KWSys 2016-11-09 (18c65411) > KWSys 2016-11-21 (cb55cf5a) > > Maeliss Jallais (1): > BUG: Add unsigned and signed short to the wrapping of vnl_matrix > > Matthew McCormick (85): > PERF: Simplify HilbertPath numberOfPathVertices computation. > BUG: CID 1355469 NNetClassifierTest4 unintended integer division. > BUG: Update Cuberille Remote for version check fix. > ENH: Bump ITK version to 4.11.0. > BUG: Fix HDF5ImageIO type information. > BUG: Fix H5File memory leak in HDF5ImageIO. > DOC: Collect Francois Budin's contributions in .mailmap > BUG: Limit WRAP_ITK_MODULES when building externally > STYLE: Improvements to ResourceProbe report output. > ENH: Add a useTabs argument to ResourceProbe::Report. > ENH: Add standard error measure to the ResourceProbe > ENH: Add itk_python_add_test function. > BUG: Remove VNL file from subtree merge. > COMP: Fix wrapping with a space in the Python include path > BUG: Fix PermuteAxesImageFilter pipeline method visibility > BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter > BUG: ResampleImageFilter honor isInside output of the transform method > COMP: Avoid recursive include of itkMath.h > COMP: Fix VXL header installation locations > BUG: ClampImageFilterTest for older GCC, InPlaceOn > DOC: Add CONTRIBUTING.md file to the top level. > COMP: Update VariationalRegistration to address Doxygen warnings > BUG: Compiler detections file installed into ITK build tree location > COMP: Do not use string(TIMESTAMP. > COMP: Remove HDF5 -std=c99 for C++ files > BUG: Do not build HDF5 static library with a shared build > ENH: Add PerformanceBenchmarking Remote Module > COMP: Remove duplicate wrappings for ResampleImageFilter > BUG: Put Python test output files in the build tree > BUG: Improve HDF5ImageIO::CloseDataSet name > COMP: Use add_python_test PythonLazyLoadingImage > COMP: Address missing override it itkFactoryTestLib.cxx > BUG: Index,Size,Offset constructors present in Python with C++11 > COMP: Address missing override it itkFactoryTestLib.cxx > BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT > ENH: Bump SetupForDevelopment version > BUG: Add missing ZLib deflate support to HDF5 > BUG: Address memory leak, remove NumPy build dep in BridgeNumPy > COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory > COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory > BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include > ITK_WRAP_IMAGE_DIMS > BUG: RichardsonLucyDeconvolutionImageFilter with non-null input > Image Origin > BUG: Fix inconsistent Twister start with Initialize(seed) and > SetSeed(seed) > BUG: Do not hard code CMake scripts in HDF5 > COMP: Workaround Emscripten ITKCommon test build failure > COMP: Do embed fancy HDF5 libsettings with Emscripten > COMP: Add missing H5T_patch_vlen_file declaration > ENH: Bump CastXML to 2016-10-11 master. > COMP: Workaround Emscripten ITKCommon test build failure > BUG: Swap CastXML hashes for Mac OSX and Windows > ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 > COMP: Fix VNL tests when cross-compiling > ENH: ExternalData multi-algorithm support > ENH: ExternalData support for data.kitware.com > BUG: Install missing H5pubconf.h > BUG: Use SpacePrecisionType in TileImageFilter > BUG: Use internal ExternalData_Add_Target > ENH: Run .sha512, .md5 simultaneous modification pre-commit check > BUG: Correct CastXML Windows binary > BUG: Support non-zero Index in LevelSetNeighborhoodExtractor > ENH: Add ArchiveTestingDataOnGirder.py > BUG: Correct AtanRegularizationHeavisideStepFunction derivative > ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh > BUG: Remove extra HessianToObjectness content links > ENH: Wrap SpatialFunction float types with ITK_WRAP_float > BUG: Bump PerformanceBenchmarking to 2016-11-04 > BUG: itk_python_expression_add_test too many quotes. > ENH: Wrap VectorImage with complex real pixel types > ENH: Bump PerformanceBenchmarking to 2016-11-07 > BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter > ENH: Create itk_module_add_library macro > BUG: Update computeCodeCoverageLocally.sh for KWStyle addition > COMP: Install a newer version of CMake on CircleCI > ENH: Use GitHub Pages as the first ExternalData resource > ENH: Add tests to demonstrate OSX dynamic_cast failure > BUG: Use random seed with for MersenneTwisterRandomVariateGenerator. > BUG: Enable program global timestamp > BUG: Set random number seed in Mattes metric test > BUG: Notify builder that ITK_DYNAMIC_LOADING is required with wrapping > BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON > BUG: Set random number seed mutual information metric tests > BUG: Wrap std::vector< itk.Point > > BUG: Fix wrapping of LandmarkBasedTransformInitializer > BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter > DOC: Add D?enan Zuki? to .mailmap > > Max Smolens (4): > COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field > BUG: CID-1355438 QuadEdgeTest1 resource leaks > COMP: CID-1355472 MIRegistrationFunction unused value > COMP: Fix link errors for VNL template instantiations on Windows > > Mayeul Chassagnard (7): > BUG: Test added and error fixed in HDF5ImageIO > ENH: Update add_library TO itk_module_add_library > COMP: Set Policy CMP0023 target_link_libraries for > Modules/ThirdParty/VNLI... > BUG: Add ITK_TEMPLATE_EXPORT to template classes > BUG: Fix errors linked to dyn_cast merge > BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes > BUG: dash3win7 dashboard build error unresolved external symbol > > Michka Popoff (3): > ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 > ENH: Update igenerator.py for pygccxml v1.8.0 > COMP: Use pygccxml's public API for apply definitions > > Pierre Barbier de Reuille (2): > COMP: Fix function naming error when using FFTWD > COMP: Fix function naming error when using FFTWD > > Sean McBride (1): > COMP: Bypass HDF5 bugs under TSan > > Simon Rit (2): > COMP: remove C++11 compiler warning for CUDA compilations > COMP: remove C++11 compiler warning for CUDA compilations > > Somesh Kashyap (2): > BUG: Override TransformCategoryType for > AzimuthElevationToCartesianTransform > BUG: -Added test case for itkAzimuthElevationToCartesianTransform > > Sumedha Singla (1): > ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote module > > Taylor Braun-Jones (4): > COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is > enabled > COMP: Fix truncation from double to float warning > DOC: Fix incorrect itkFactorylessNewMacro documentation > COMP: Only include the headers for required OpenCV modules > > Thien Nguyen (1): > PERF: SmapsFileParser unnecessary dynamic_cast > > VXL Maintainers (4): > VNL 2016-05-15 (14f97ab4) > VNL 2016-06-22 (23a93adb) > VNL 2016-06-29 (d62a2d70) > VNL 2016-07-06 (acfa62cc) > > Vladimir S. FONOV (1): > COMP: Build against GCC 5.3.1 > > Zach Williamson (2): > ENH: Update Remote Module Tags > BUG: Fix Python Wrappings in C++11 > > Ziv Yaniv (1): > BUG: Metric sampling percentage accepted values outside (0.0, 1.0]. > > > ITK Software Guide Changes > ---------------------------------------- > > Matt McCormick (8): > DOC: Move the location for obtaining the software > DOC: Remove reference to ITKApps > ENH: Bump ITK ExternalProject version to 2016-11-02 master > DOC: Document the ITK module registry > ENH: Bump ITK ExternalProject version to v4.11rc01 master > DOC: Update CMake hyperlinks > DOC: Update minimum required CMake version to 2.8.9 > DOC: Add section on static and shared libraries. > > > ITK Sphinx Examples Changes > ------------------------------------------- > > Matt McCormick (6): > BUG: Use GDCM ITK module name > ENH: Rename ReadDICOMSeriesAndWrite3DImage > BUG: Add tests for ReadDICOMSeriesAndWrite3DImage > ENH: Bump ITK Superbuild version to 2016-09-20 master > ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage > ENH: Add Python version of CreateAnRGBImage > > Michka Popoff (5): > ENH: Use same Python interpreter as ITK for wrapping tests > BUG: Fix ResampleAnImage example (Python3) > ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRe > gionOfAnImage > ENH: Add 7 Python examples to Core/Common > ENH: Add BoundingBoxOfAPointSet Python example > > > ----------------------------------------------------- > Errors or omissions? Please fix them here: > > > https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFrA54KRvf__ > 4oeT0ymzZg/edit > _______________________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Kitware offers ITK Training Courses, for more information visit: > http://kitware.com/products/protraining.php > > Please keep messages on-topic and check the ITK FAQ at: > http://www.itk.org/Wiki/ITK_FAQ > > Follow this link to subscribe/unsubscribe: > http://public.kitware.com/mailman/listinfo/insight-developers > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dzenanz at gmail.com Thu Jan 19 12:46:45 2017 From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=) Date: Thu, 19 Jan 2017 12:46:45 -0500 Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.11 Release Candidate 2 is ready for testing! In-Reply-To: References: Message-ID: Hi Taylor, I submitted a bug report to Microsoft about it, and somebody said they will add ITK to their compiler test suite. Also, that crashing bug was supposedly fixed for "final release". Regards, D?enan On Thu, Jan 19, 2017 at 12:18 PM, Taylor Braun-Jones wrote: > Any chance the 4.11 release could have at least some preliminary support > for VS2017? Right now it crashes the compiler: > > C:\src\itk\modules\core\common\include\itkPromoteType.h(97): fatal error > C1001: An internal error has occurred in the compiler. > (compiler file 'msc1.cpp', line 1469) > To work around this problem, try simplifying or changing the program near > the locations listed above. > Please choose the Technical Support command on the Visual C++ > Help menu, or open the Technical Support help file for more information > Internal Compiler Error in C:\PROGRA~2\MIB055~1\2017\ > COMMUN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe. You will be > prompted to send an error report to Microsoft later. > INTERNAL COMPILER ERROR in 'C:\PROGRA~2\MIB055~1\2017\ > COMMUN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe' > Please choose the Technical Support command on the Visual C++ > Help menu, or open the Technical Support help file for more information > > Taylor > > On Mon, Jan 16, 2017 at 4:18 PM, Matt McCormick < > matt.mccormick at kitware.com> wrote: > >> On behalf of the Insight Toolkit community, we are proud to announce >> that ITK 4.11 release candidate 2 has been tagged and is available for >> testing! Please take this opportunity to test the new features in the >> release candidate. >> >> >> To obtain the source code, use the links: >> >> >> https://github.com/Kitware/ITK/archive/v4.11rc02.zip >> https://github.com/Kitware/ITK/archive/v4.11rc02.tar.gz >> >> or >> >> git clone https://itk.org/ITK.git >> cd ITK >> git checkout -q --detach v4.11rc02 >> >> For more details, please see the Git documentation [1]. >> >> >> A few selected highlights for this release: >> >> - Remote Modules were added to: perturb mesh vertices with additive >> gaussian noise, accurately benchmark computational performance, >> perform principal components analysis of scalar, vector, and mesh >> vertex data, create a run-length encoded memory compression scheme for >> itk::Image, run N-D morphological contour interpolation, interpolate >> multi-label images, iterate over multiple images simultaneously, and >> compute inverse displacement fields. >> - NumPy bridge support is now enabled by default with NumPy array >> views of multi-component images and VNL vectors and matrices. >> - Internal HDF5 was updated to the latest upstream version along >> with a number of other third-party libraries. >> >> >> This release introduces a new template class export specification >> macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated >> classes to address failing dynamic_cast's and exception catching >> across binaries on Mac OSX. >> >> Bugs were addressed and improvements were made to how the >> pseudo-random number generator is used. Tests that rely on the random >> number generator should explicitly set the global seed at start: >> >> itk::Statistics::MersenneTwisterRandomVariateGenerator:: >> GetInstance()->SetSeed( >> 121212 ); >> >> To improve randomness, new instances of the generator start from a >> different seed; some minor differences in the output of algorithms >> that uses the generator, like mutual information metrics, should be >> expected. >> >> Additionally, output may change for registration with composite affine >> transforms; the v4 registration framework now uses corner sampling as >> opposed to random sampling to estimate their parameter scales. >> >> >> Please test the release candidate and share your experiences on the >> mailing list, issue tracker, and Gerrit Code Review. >> >> >> An Experimental build, which demonstrates how the test suite performs >> on your local build system, can be submitted to the dashboard [2] >> with: >> >> mkdir ../ITK-build >> cd ../ITK-build >> cmake ../ITK >> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit >> >> Visual Studio builds must also add ?-C Release? to the ctest command. >> >> Notify the mailing list if there are any unexpected failures. Testing >> your own applications against the RC is also appreciated. >> >> >> Congratulations to the 31 contributors to this release. We would >> especially like to recognize the new contributors: Hastings Greer, >> Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, >> Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss >> Jallais. >> >> >> The 4.11.0 final release is scheduled for January 23rd. >> >> >> [1] http://www.itk.org/Wiki/ITK/Git >> >> [2] http://open.cdash.org/index.php?project=Insight >> >> >> New Features >> ------------ >> >> * Wrapping Improvements >> - Python GetArrayFromImage() and GetImageFromArray() from >> ITKBridgeNumPy are directly accessible from the Python itk namespace. >> - The itk package loads much faster: individual modules are loaded >> only when required. >> - Conversion of ITK images from and to NumPy array using Bridge >> NumPy supports RGB, RGBA, and Vector images. >> - VNL vectors and VNL matrices can be converted from and to NumPy >> objects with respectively the new couple of functions >> GetArrayFromVnlVector()/GetVnlVectorFromArray() and >> GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() >> - The global timestamp is used across all ITK Python modules when >> built statically >> - Wrap additional classes such as KernelFunctionBase >> - itk_python_add_test CMake function added for Python script testing >> in ITK modules >> >> * New Remote Modules >> - DVMeshNoise >> - Perturbing mesh vertices with additive gaussian noise >> - http://hdl.handle.net/10380/3567 >> - PerformanceBenchmarking >> - Accurate benchmarking of computational performance >> - http://hdl.handle.net/10380/3557 >> - PrincipalComponentsAnalysis >> - Principal components analysis of scalar, vector, and mesh vertex >> data >> - http://hdl.handle.net/10380/3386 >> - RLEImage >> - Run-length encoded memory compression scheme for itk::Image >> - http://hdl.handle.net/10380/3562 >> - MorphologicalContourInterpolation >> - N-D morphological contour interpolation >> - http://hdl.handle.net/10380/3563 >> - GenericLabelInterpolator >> - A generic interpolator for multi-label images >> - http://hdl.handle.net/10380/3506 >> - MultipleImageIterator >> - Iterate over multiple images simultaneously >> - http://hdl.handle.net/10380/3455 >> - FixedPointInverseDisplacementField >> - Computes inverse displacement field >> - http://hdl.handle.net/10380/3222 >> >> * Core Improvements >> - New ITK_TEMPLATE_EXPORT for templated classes resolves >> cross-binary dynamic_cast on Mac OSX >> - New MersenneTwisterRandomVariateGenerator instances are >> initialized with different seeds >> - Use compiler feature detection in CMake for C++11 features, etc. >> - New CMake macro itk_module_add_library for creating libraries in ITK >> modules >> - Improved support for ccache and distcc with >> CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) >> - Support for .sha512 ExternalData content links >> - GitHub Pages and data.kitware.com ExternalData repositories added >> - GPGPU system support for C++11 >> - Support of new compilers: Visual Studio 15 and XCode 8.2.1 >> (clang-800.0.42.1) >> >> * Filtering Improvements >> - HessianToObjectnessMeasure moved out of the ITKReview module >> - New UnsharpMaskImageFilter for image edge enhancement >> >> * IO Improvements >> - TransformFactory class has been moved to a separate module >> - Spline order added to BSplineTransform identifier >> - Improved NIFTI orientation support >> >> * Documentation Improvements >> - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples >> >> * Third Party Library Updates >> - pygccxml updated to v1.8.0 >> - VNL updated to latest upstream (2016.07.06) >> - SWIG updated to v3.0.11 >> - KWSys updated to latest upstream (2016.11.21) >> - HDF5 updated to v1.8.17 >> - SCIFIO updated to latest upstream (2016.12.01) >> - DCMTK updated to 3.6.1_20121012 >> - CastXML to latest upstream (2016.01.28) >> >> * Improved Code Coverage -- we are at 85.44%! >> - Jon Haitz-Legarreta's extensive code coverage improvements >> - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ >> >> * *Lots* of important bug fixes >> >> * And much more! See details in the log below. >> >> >> Changes from v4.11rc01 to v4.11rc02 >> ----------------------------------- >> >> Bradley Lowekamp (5): >> BUG: Remove unused SimpleImageRegistrationTest baselines >> ENH: Expose GetNextSeed method in MersenneTwiseter Generator >> BUG: Add option for fixed seed or wall clock seed for sampling >> BUG: Use metric random seed in v3 examples >> BUG: Prefer setting seed at algorithm in "v4" tests. >> >> Francois Budin (3): >> ENH: Update BridgeNumPy to latest version on 2017.01.08 to address >> ITK-3511 >> BUG: Extra \$ in doxygen comment >> BUG: Binary include directory added only if enabled shared >> >> Jon Haitz Legarreta (2): >> DOC: Document itkLabelOverlapMeasuresImageFilter methods. >> DOC: Fix ITKImageNoise filters' doc TeX errors. >> >> Matthew McCormick (1): >> BUG: Remove invalid ImageRegistration4Test.png.sha512 >> >> Max Smolens (1): >> DOC: Fix itkUnsharpMaskImageFilter documentation typos >> >> Simon Rit (1): >> BUG: ITK-based software was crasing when thread creation failed >> >> >> Changes from v4.10.0 to v4.11rc01 >> --------------------------------- >> >> Bill Lorensen (4): >> COMP: Restore support for clang 3.0 compiler >> COMP: Consistent use of ModifiedTimeType >> ENH: Bump WikiExamples remote module version >> ENH: Bump WikiExamples version >> >> Bradley Lowekamp (57): >> ENH: Add registered TrasformIO's to exception >> ENH: Use template or constant for loop stop condition >> ENH: Updating SWIG version to 3.0.9 >> COMP: Address VS9 ambiguous std::abs call in Haung calculator >> COMP: Fix undefined NumericTraits::Zero and One errors with mingw64 >> BUG: Fix segfault if ~CleanUpObjectFactory called multiple times >> BUG: Address itkHDF5ImageIO test failures for mingw64 >> BUG: demonstrate dynamic_cast failure when reading transforms >> BUG: Address itkHDF5ImageIO test failures for mingw64 >> ENH: Updating SWIG version to 3.0.10 >> ENH: Enable CMP0063 New behavior >> COMP: Enable hidden visibility property with vxl static libraries >> COMP: Enable hidden visibility property with HDF5 static libraries >> COMP: Enable hidden visibility property with HDF5 static libraries >> BUG: Match Add2 function to AddImageFilter documentation >> ENH: Improve support for std::complex with PowImageFilter >> ENH: Explicitly mark required files for dependent tests >> COMP: Bypass XCode 7.3,8 internal compilation error >> COMP: Address CMake configuration error with itkJPEG2000Test03 >> property >> BUG: Correct test's REQUIRED_FILES to only the input. >> ENH: move HessianToObjectnessMeasure filter out of Review >> ENH: Separate TransformFactory class into separate module >> DOC: Add links between similar label to rgb filters >> ENH: Separate data from function calls >> COMP: Fix changed Graft method >> ENH: Reduce template dependencies on CalculateRotationMatrix >> ENH: Add Functor Accessors to LabelMapToRGB filter >> BUG: Enable VirtualDomain and FixedTransform in RegMethv4 >> BUG: Use BSpline Order 3 for 2D in transform factory. >> ENH: Add spline order to BSplineTransform's string id >> ENH: Adding initial CircleCi configuration file >> COMP: Fix float to unsigned integer conversion warnings >> BUG: Include installed modules in ITK_MODULES_ENABLED >> COMP: Address CMake error that ITKGPUCommon is not in export >> COMP: Address wrong library types with VS and shared libraries >> BUG: Ensure CreateImageIO is concurrent thread safe >> ENH: Mark HDF5 CMake options as internal >> COMP: Add template export declaration for ParametricPath >> COMP: Correct TEMPLATE_EXPLICIT definition in Path module >> ENH: Factor out common code in the TrasformFactoryBase registration >> ENH: Add CMake variable for max transform dimension, defaults 4 >> ENH: Create CMake module to check for private RTTI compatibility >> ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT >> COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT >> BUG: Add explicit instantiate for ObjectToObjectOptimizerBase >> COMP: Use add_definitions for CMake 2.8.9 compatibility >> COMP: Add warning suppression for distcc warning >> ENH: Explicitly instantiate the optimizer base over float >> BUG: Use IsLinear to check if transform is "affine" >> ENH: Remove unneeded includes of random iterator header >> ENH: Improve thread-safety for Generator, and unique New sequence >> ENH: Do not use global random generator >> BUG: Update v3 registration metrics to use local seed >> ENH: Prefer setting local seed over global in tests. >> ENH: Update SWIG to latest 3.0.11 release >> BUG: relax testing parameters for v3 translation registration >> BUG: Restore baseline for debug registration >> >> Caspar Goch (2): >> BUG: Use printable type for RGBA pixel ostream for ITK-3501 >> STYLE: Remove extra space for ITK-3501 >> >> Christina Rossmanith (1): >> DOC: Added more details to the class Doxygen documentation. >> >> Davis Vigneault (2): >> COMP: VCL_DEFINE_SPECIALIZATION not defined >> ENH: Add remote module DVMeshNoise >> >> D?enan Zuki? (27): >> BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) >> ENH: Adding MultipleImageIterator as a remote module >> COMP: enables TBB 4.4 back-end for VTK7's SMP >> COMP: enabling position independent code flag for FFTW >> ENH: adding configuration file for code reformatting tool >> clang-format >> ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 >> COMP: Fixing -fPIC flag passing with Ninja build system >> ENH: Adding RLEImage as a remote module >> ENH: Updating uncrustify configuration to current git version >> STYLE: better compliance with ITK style >> STYLE: A new option in uncrustify, updating the config file >> accordingly >> ENH: Adding MorphologicalContourInterpolation as a remote module >> ENH: improving documentation >> BUG: fixing buffer growing endlessly, as reported by Timothee Evain >> BUG: fixing buffer growing endlessly, as reported by Timothee Evain >> STYLE: default uncrustify configuration file is less aggressive >> COMP: Fixing warning >> COMP: VS15 compiler fix >> BUG: casting -9 to unsigned produced unwanted result >> BUG: Ensuring consistency between debug and release >> COMP: Updating LesionSizingToolkit after some recent compile fixes >> COMP: respect option METAIO_USE_NAMESPACE >> ENH: updating version of AnisotropicDiffusionLBR >> ENH: adding UnsharpMaskingImageFilter >> COMP: explicitly cast to output type >> BUG: double call to update would cause empty output image >> ENH: Updating RLEImage remote module. Change-log: >> >> Eugene Prilepin (4): >> ENH: Add the "ITK_USE_GPU" to ITK Config >> BUG: Fix API for set/get "LaplacianImageFilter" object >> ENH: Add support of images types with the 'CovariantVector' pixel >> type >> ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap >> >> Francois Budin (52): >> ENH: Adding GetArrayFromImage in python itk namespace >> ENH: Adding GetImageFromArray in python itk namespace >> ENH: *_WRAP_* variable per external module >> BUG: ImportImageFilter not responsible of memory management >> ENH: New remote module GenericLabelInterpolator >> DOC: SetNumberOfOutputs had wrong comment >> BUG: lazyAttributes dictionary keys could be over-ridden >> BUG: lazyAttributes dictionary keys could be over-ridden >> BUG: Fix recent update of HDF5 (1.8.17) >> ENH: Update SCIFIO to latest version on 08/23/2016 >> ENH: Addition of the remote module FixedPointInverseDisplacementF >> ield >> ENH: Update SCIFIO to latest version on 08/29/2016 >> BUG: Path to commit was relative instead of absolute >> ENH: Path to SetupForDevelopment is relative, not absolute >> BUG: LSMImageIO write function was not checking image dimension >> BUG: LSMImageIO was not checking correctly image dimension >> BUG: Missing associated test data >> BUG: Missing associated test data >> ENH: Bump CMakeLists.txt version to 4.10.1. >> BUG: Quotes are not escaped in configured cmake file >> ENH: Improving API of Graft() in itk::Image >> ENH: Updating ITKGenericLabelInterpolator remote module >> ENH: Update ITKIOTransformDCMTK remote module >> BUG: Factory registration should depend on ITK_BUILD_SHARED >> COMP: Updating DCMTK compilation for Ninja >> ENH: Update version of DCMTK to 3.6.1_20121012 >> ENH: Update SCIFIO to latest version on 10/25/2016 >> BUG: Swig and PCRE do not support space in installation paths >> BUG: exit() call from within piped commands was not exiting the >> script >> BUG: Typo in folder creation command >> ENH: Only display message for transform registered multiple times in >> debug >> ENH: Image spacing must be positive >> BUG: Supported extensions by PNG IO were not added in constructor. >> DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. >> ENH: Update SCIFIO to lastest (2016.12.01) >> ENH: FixedPointInverseDisplacementField moved to >> InsightSoftwareConsortium >> COMP: Remove compilation warnings >> ENH: Improved support of ccache and distcc >> BUG: GPUImage regression due to API change. >> ENH: Update Bridge Numpy (2016.12.05) >> ENH: Update VariationalRegistration to remove warnings during >> compilation >> ENH: FindPythonLibs does not support both debug and release >> python libraries >> ENH: Update VariationalRegistration >> BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of >> itk::ImageBase >> BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper >> BUG: Missing ITK_TEMPLATE_EXPORT in templated class >> BUG: Remove linkage warnings on MacOS >> BUG: HDF5 CMake installation directory variable had not been updated >> BUG: Missing include header in AnisotropicDiffusionBLR remote >> module hxx files >> COMP: Silencing unused variable warning in itkTimeStamp >> STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt >> COMP: OS*Barrier functions are deprecated on MacOS 10.12 >> >> GCC-XML Upstream (1): >> ENH: pygccxml v1.8.0 (reduced) >> >> Gert Wollny (1): >> BUG: Relax vnl_complex floating point comparisons for i386 >> >> Gilles Filippini (1): >> BUG: Use NATIVE_HBOOL for encoding HDF5 types. >> >> HDF Group (1): >> ENH: hdf5 1.8.17-r30218 (reduced) >> >> Hans Johnson (23): >> COMP: Use cmake WriteCompilerDetectionHeader >> ENH: Use itk_compiler_detection versions >> COMP: Need ITK_NOEXCEPT_OR_THROW macro. >> COMP: Provide consistent granular C++11 support >> STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT >> STYLE: Prefer to use consistent definitions >> COMP: Improve robustness of identifying the compiler standard used >> BUG: try_compile for AlignAs were always failing >> STYLE: Provide a well documented macro for repeated code >> STYLE: Delete functions in consistent way >> COMP: GPU baseclass ivars need to be protected >> COMP: Remove unnecessary circular dependancy >> COMP: Add long long usage for HDF5 >> COMP: Add long long usage for HDF5 >> STYLE: Prefer static small array to dynamic array >> BUG: Confusing interface for FFTW wisdom files >> STYLE: Output dimension from OutputImageType >> STYLE: Code review style cleanups >> STYLE: Prefer to use ITK AssertOrThrow macros >> ENH: Add OverrideBoundaryCondition logic >> ENH: Provide mechanism for enhanced NIFTI support >> BUG: Use NIFTI sform/qform conventions correctly >> ENH: Remove ambiguity about sform/qform >> >> Hastings Greer (8): >> BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically >> BUG: make itkTriangleHelper instantiable to ease wrapping >> BUG: remove lsqr because of license issues ITK 1160 >> BUG: make itkTriangleHelper instantiable to ease wrapping >> BUG: initialize X to zero in lsmr Solve >> BUG: Labled Point Set Registration: test multiple labels >> BUG: Fix python wrapping of Cuberille remote module >> BUG: Add test demonstrating Python global timestamp issue >> >> Jean-Christophe Fillion-Robin (5): >> STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393 >> STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 >> STYLE: Update MeshIO factories to use RegisterFactoryInternal. See >> #3393 >> STYLE: MeshIO: Move MeshFileWriterException into its own file. See >> #3393 >> STYLE: MeshIO: Remove unused include from headers. See #3393 >> >> Johan Andruejol (3): >> ENH: Add missing itkKernelFunctionBase wrapping >> ENH: Add PrincipalComponentsAnalysis remote module >> COMP: Override cannot be used with inline >> >> Jon Haitz Legarreta (216): >> ENH: Improve itkFlatStructutingElement coverage. >> ENH: Improve itkPathToImageFilter class coverage. >> ENH: Improve itkIsolatedWatershedImageFilter coverage. >> ENH: Improve itkLogSigmoidTransferFunction coverage. >> STYLE: Improve itkBSplineTransform doc style. >> ENH: Improve GaborKernelFunctionCoverage. >> PERF: Remove duplicate itkMath include >> STYLE: Move the PrintSelf method to the end >> STYLE: Improve the itkScalarToRGBColormapImageFilter style. >> STYLE: Delete duplicate method documentation >> STYLE: Remove method documentation from implementation file >> STYLE: Improve GACLevelSet classes' style >> STYLE: Improve test style >> ENH: Improve itkGaussianDerivativeImageFilter coverage. >> ENH: Improve the itkScalarToRGBColormapImageFilter coverage >> STYLE: Improve itkScalarToRGBColormap test style >> ENH: Improve GACLSImageFilter classes' coverage >> STYLE: Improve comment style in GACLS tests >> ENH: Improve itkImportImageFilter coverage >> ENH: Improve itkVideoFileReader coverage >> ENH: Improve itkVideoFileWriter coverage >> STYLE: Improve the itkVideoFileWriter style. >> STYLE: Imrpove itkVideoFileReader style. >> ENH: Improve the itkBSplineControlPointImageFunction coverage >> STYLE: Improve the itkIntensityWindowingImageFilter style >> STYLE: Improve the itkIntensityWindowingImageFilter test style >> ENH: Improve ImageToSpatialObjectRegistrationMethod coverage >> STYLE: Improve test style >> ENH: Improve MaskNeighborhoodOperatorImageFilter coverage >> ENH: Improve itkMeshFileWriter coverage >> ENH: Improve RescaleIntensityImageFilter coverage. >> ENH: Improve itkClampImageFilter coverage. >> BUG: Fix ivar type casting in PrintSelf. >> STYLE: Improve MRIBiasFieldCorrectionFilter style. >> ENH: Improve MRIBiasFieldCorrectionFilter coverage. >> ENH: Improve itkIntensityWindowingImageFilter coverage >> BUG: Fix Run-time type information in CSV module classes. >> ENH: Improve the itkHistogram class code coverage. >> DOC: Fix documentation typo. >> STYLE: Improve the ImproveRescaleIntensityImageFilter style. >> PERF: Make the itkVideoFileReader ivars private >> PERF: Make itkVideoFileWriter ivars private >> ENH: Improve coverage for itk::OrientImageFilter. >> STYLE: Improve itk::OrientImageFilter class style. >> ENH: Improve itkCSVNumericObjectFileWriter coverage. >> ENH: Add missing standard class typdefs. >> ENH: Improve itkVoronoiSegmentationImageFilter coverage. >> ENH: Improve itkVoronoiSegmentationImageFilter style. >> STYLE: Improve the MalahanobisDistanceThresholdImageFunction style. >> ENH: Improve coverage for itkMalahanobisDistanceThreshold. >> ENH: Improve itk::MinimumMaximumImageCalculator coverage. >> ENH: Improve itkMinimumMaximumImageCalculator style. >> BUG: Fix type mismatch in test. >> STYLE: Improve itkPolylineMaskImagefilter style. >> ENH: Improve itkPolylineMaskImageFilter coverage. >> ENH: Improve itkFileListVideoStyle. >> ENH: Improve itkLandmarkBasedTransformInitializer coverage. >> ENH: Add baseline image to itkPolylineMaskImageFilter test. >> ENH: Improve coverage for itkBSplineTransformInitializer. >> STYLE: Improve itkBSplineTransformInitializer doc style. >> ENH: Enhance itkBSplineTransformInitializer implementation. >> DOC: Fix typo in method documentation. >> ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. >> STYLE: Improve the itkSimpleContourExtractorImageFilter style. >> ENH: Exercise the class' Get methods. >> ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. >> ENH: Improve style for itkThresholdLabelerImageFilter. >> ENH: Improve itkThresholdLabelerImageFilter coverage. >> ENH: Get internal ImageIO via a const macro. >> ENH: Improve the itkSimpleContourExtractorImageFilter coverage. >> STYLE: Improve the itkMetaArray class style. >> ENH: Improve MetaArrayReader/Writer coverages. >> ENH: Improve the itkCovarianceImageFunction style. >> STYLE: Improve itkVoronoiDiagram2DGenerator style. >> ENH: Improve VoronoiDiagram2DGenerator coverage. >> STYLE: Improve the itkBayesianClassifierImageFilter style. >> STYLE: Improve the itkMetaArrayWriter style. >> ENH: Improve itkCovarianteImageFunction coverage. >> COMP: Fix signed/unsigned int comparison warning. >> DOC: Improve itkGrayscaleDilateImageFilter documentation. >> DOC: Improve documentation for itkGrayscaleErodeImageFilter. >> DOC: Improve ConfigureHistogram method documentation. >> STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. >> BUG: Fix Superclass name in RTTI. >> STYLE: Improve itkGaussianInterpolateImageFunction style. >> ENH: Improve coverage for itkGaussianInterpolateImageFunction. >> ENH: Improve itkBayesianClassifierImageFilter coverage. >> ENH: Add itkBSplineControlPointImageFilter RTTI. >> STYLE: Improve itkBSplinecontrolPointImageFilter style. >> ENH: Improve itkBSplineControlPointImageFilter coverage. >> ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4. >> STYLE: Improve the class implementation file style. >> STYLE: Improve the itkResampleImageFilter style. >> DOC: Fix typo in GetMTime method doc. >> STYLE: Remove out-of-body implementation doc >> ENH: Improve itkResampleImageFilter coverage. >> ENH: Improve itkAbsImageAdaptor and Filter coverage. >> BUG: Fix itkLSMImageIO class' Superclass name. >> ENH: Improve the itkInterpolateImagePointsFilter coverage. >> ENH: Improve itkPowImageFilter coverage. >> BUG: Fix ConvolutionImageFilter RTTI. >> STYLE: Use initialization lists. >> STYLE: Improve BinaryFunctorImageFilter style. >> ENH: Improve itkMinimumImageFilter code coverage. >> BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. >> ENH: Improve MaximumImageFilter coverage. >> BUG: Fix conversion to PixelType conversion. >> COMP: Fix double to unsigned char conversion warning. >> ENH: Improve coverage for itkNormalizeToConstantImageFilter. >> BUG: Fix itkSquaredDifferenceErrorFunction RTTI. >> ENH: Improve itkMeanImageFunctionCoverage. >> ENH: Improve itkSquareImageFilter coverage. >> STYLE: Improve the itkSquaredDifferenceErrorFunction style. >> STYLE: Enhance style for itkNormalizeToConstantImageFilter. >> STYLE: Improve itkMeanImageFunction style. >> ENH: Remove unnecesary call to filter print. >> ENH: Improve itkRegionOfInterestImageFilter coverage. >> STYLE: Improve itkRegionOfInterestImageFilter style. >> STYLE: Improve itkPasteImageFilter style. >> STYLE: Improve itkJoinSeriesImageFilter style. >> BUG: Fix itkPadLabelMapFilter RTTI Superclass. >> COMP: Address std::cout.precision conversion warning. >> ENH: Improve itkBayesianClassifiertImageFilter coverage. >> ENH: Improve itkPadLabelMapFilter coverage. >> ENH: Improve itkJoinSeriesImageFilter coverage. >> ENH: Improve the itkPasteImageFilter coverage. >> ENH: Improve MeanImageFilter coverage. >> COMP: Address std::cout.precision conversion warning. >> ENH: Improve TernaryMagnitudeImageFilter coverage. >> ENH: Improve FFTConvolutionImageFilter coverage. >> DOC: Fix class documentation in ternary magnitude filters. >> ENH: Improve ConstrainedValueDifferenceImageFilter coverage. >> ENH: Improve AndImageFilter coverage. >> ENH: Add baseline test to itkTernaryMagnitudeImageFilter. >> ENH: Use MD5 comparison framework in baseline test. >> ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. >> STYLE: Improve the itkVectorRescaleIntensityImageFilter style. >> ENH: Print missing ivar in filter PrintSelf method. >> ENH: Improve itkComplexToImaginaryFilter coverage. >> ENH: Improve itkComplexToPhaseImageFilter coverage. >> ENH: Improve itkComplexToModulusImageFilter coverage. >> ENH: Improve itkComplexToRealImageFilter coverage. >> ENH: Improve itkVectorResampleImageFilter coverage. >> ENH: Add GetTransform method. >> ENH: Improve itkConstrainedValueAdditionImageFilter coverage. >> ENH: Improve itkModulusImageFilter coverage. >> ENH: Improve itkLog10ImageFilter coverage. >> ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. >> ENH: Improve itkLogImageFilter coverage. >> ENH: Improve itkInvertIntensityImageFilter coverage. >> STYLE: Improve itkInvertIntensityImageFilter style. >> DOC: Add missing doc to itkInvertIntensityImageFilter. >> STYLE: Improve itkIntensityWindowingImageFilter style. >> STYLE: Use initialization lists. >> ENH: Improve itkIntensityWindowingImageFilter coverage. >> ENH: Improve itkNaryMaximumImageFilter coverage. >> COMP: Fix std::precision type casting warning. >> ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. >> STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod >> style. >> ENH: Remove SmartPointers being explicitly initialized to null. >> STYLE: Improve the itkPointSetToImageRegistrationMethod style. >> ENH: Improve itkPointSetToImageRegistration coverage. >> STYLE: Change the name of the itkPointSetToImageRegistrationMethod >> test. >> STYLE: Improve itkVectorResampleImageFilter style. >> STYLE: Improve the itkAntiAliasBinaryImageFilter style. >> ENH: Improve trigonometric function filters' coverage. >> STYLE: Remove test names from std::out messages. >> ENH: Improve Boolean Algebra ImageFilters coverage. >> STYLE: Improve the EuclideanDistancePointMetric style. >> ENH: Improve itkSigmoidImageFilter coverage. >> STYLE: Improve itkCropImageFilter style. >> ENH: Improve itkCropImageFilter coverage. >> ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. >> ENH: Improve itkRescaleIntensityImageFilter coverage. >> ENH: Improve the itkMatrixSelectionImageFilter coverage. >> ENH: Improve itkTanImageFilter and Adaptor coverage. >> ENH: Increase itkSqrtImageFilter and Adaptor coverage. >> ENH: Increase itkTernaryOperatorImageFilter coverage. >> ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. >> STYLE: Improve itkScalarImagekmeansImageFilter style. >> STYLE: Conform to TEST_SET_GET_VALUE definition. >> BUG: Fix uninitialized variable due to dynamic analysis defect. >> BUG: Fix uninitialized variable defect reported by valgrind. >> ENH: Improve the itkPointSetToPointSetRegistrationTest. >> ENH: Improve the itkPointSetToImageRegistrationTest. >> ENH: Increas BinaryMagnitudeImageFilter coverage. >> STYLE: Remove test name from std output. >> ENH: Increase MagnitudeImageFilter coverage. >> BUG: Fix uninitialized variable defect reported by valgrind. >> BUG: Fix Superclass name in RTTI. >> STYLE: Improve itkFrustumSpatialFunction style. >> STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction >> style. >> BUG: Fix Superclass template argument list. >> STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. >> STYLE: Improve the itkCheckerBoardImageFilter class style. >> ENH: Improve the itk::LabelVotingImageFilter coverage. >> ENH: Improve itkCheckerBoardImageFilter coverage. >> STYLE: Improve itk::LabelVotingImageFilter style. >> STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. >> ENH: Add test for itk::FrustumSpatialFunction class. >> ENH: Improve itkConnectedThresholdImageFilter coverage. >> STYLE: Improve itkConnectedThresholdImageFilter style. >> BUG: Fix FrustumSpatialFunction internal precision conversion. >> COMP: Fix implicit conversion warning. >> STYLE: Improve itkThresholdImageFilter style. >> ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. >> BUG: Fix Superclass template argument list. >> ENH: Improve itkUnsharpMaskingImageFilter implementation. >> ENH: Improve the itkUnsharpMaskingImageFilter coverage. >> ENH: Fix UnsharpMaskingImageFilter test inconsistencies. >> BUG: Add missing itkTypeMacro. >> DOC: Document the member variables. >> BUG: Fix the itkImageSource RTTI class name, >> STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style. >> ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. >> STYLE: Improve itkLabelOverlapMeasurementImageFilter style. >> >> KWSys Robot (6): >> KWSys 2016-06-30 (96f06c8e) >> KWSys 2016-10-23 (b630d2f5) >> KWSys 2016-11-03 (37306a1c) >> KWSys 2016-11-08 (2b3e2b1c) >> KWSys 2016-11-09 (18c65411) >> KWSys 2016-11-21 (cb55cf5a) >> >> Maeliss Jallais (1): >> BUG: Add unsigned and signed short to the wrapping of vnl_matrix >> >> Matthew McCormick (85): >> PERF: Simplify HilbertPath numberOfPathVertices computation. >> BUG: CID 1355469 NNetClassifierTest4 unintended integer division. >> BUG: Update Cuberille Remote for version check fix. >> ENH: Bump ITK version to 4.11.0. >> BUG: Fix HDF5ImageIO type information. >> BUG: Fix H5File memory leak in HDF5ImageIO. >> DOC: Collect Francois Budin's contributions in .mailmap >> BUG: Limit WRAP_ITK_MODULES when building externally >> STYLE: Improvements to ResourceProbe report output. >> ENH: Add a useTabs argument to ResourceProbe::Report. >> ENH: Add standard error measure to the ResourceProbe >> ENH: Add itk_python_add_test function. >> BUG: Remove VNL file from subtree merge. >> COMP: Fix wrapping with a space in the Python include path >> BUG: Fix PermuteAxesImageFilter pipeline method visibility >> BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter >> BUG: ResampleImageFilter honor isInside output of the transform >> method >> COMP: Avoid recursive include of itkMath.h >> COMP: Fix VXL header installation locations >> BUG: ClampImageFilterTest for older GCC, InPlaceOn >> DOC: Add CONTRIBUTING.md file to the top level. >> COMP: Update VariationalRegistration to address Doxygen warnings >> BUG: Compiler detections file installed into ITK build tree location >> COMP: Do not use string(TIMESTAMP. >> COMP: Remove HDF5 -std=c99 for C++ files >> BUG: Do not build HDF5 static library with a shared build >> ENH: Add PerformanceBenchmarking Remote Module >> COMP: Remove duplicate wrappings for ResampleImageFilter >> BUG: Put Python test output files in the build tree >> BUG: Improve HDF5ImageIO::CloseDataSet name >> COMP: Use add_python_test PythonLazyLoadingImage >> COMP: Address missing override it itkFactoryTestLib.cxx >> BUG: Index,Size,Offset constructors present in Python with C++11 >> COMP: Address missing override it itkFactoryTestLib.cxx >> BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT >> ENH: Bump SetupForDevelopment version >> BUG: Add missing ZLib deflate support to HDF5 >> BUG: Address memory leak, remove NumPy build dep in BridgeNumPy >> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >> BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include >> ITK_WRAP_IMAGE_DIMS >> BUG: RichardsonLucyDeconvolutionImageFilter with non-null input >> Image Origin >> BUG: Fix inconsistent Twister start with Initialize(seed) and >> SetSeed(seed) >> BUG: Do not hard code CMake scripts in HDF5 >> COMP: Workaround Emscripten ITKCommon test build failure >> COMP: Do embed fancy HDF5 libsettings with Emscripten >> COMP: Add missing H5T_patch_vlen_file declaration >> ENH: Bump CastXML to 2016-10-11 master. >> COMP: Workaround Emscripten ITKCommon test build failure >> BUG: Swap CastXML hashes for Mac OSX and Windows >> ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 >> COMP: Fix VNL tests when cross-compiling >> ENH: ExternalData multi-algorithm support >> ENH: ExternalData support for data.kitware.com >> BUG: Install missing H5pubconf.h >> BUG: Use SpacePrecisionType in TileImageFilter >> BUG: Use internal ExternalData_Add_Target >> ENH: Run .sha512, .md5 simultaneous modification pre-commit check >> BUG: Correct CastXML Windows binary >> BUG: Support non-zero Index in LevelSetNeighborhoodExtractor >> ENH: Add ArchiveTestingDataOnGirder.py >> BUG: Correct AtanRegularizationHeavisideStepFunction derivative >> ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh >> BUG: Remove extra HessianToObjectness content links >> ENH: Wrap SpatialFunction float types with ITK_WRAP_float >> BUG: Bump PerformanceBenchmarking to 2016-11-04 >> BUG: itk_python_expression_add_test too many quotes. >> ENH: Wrap VectorImage with complex real pixel types >> ENH: Bump PerformanceBenchmarking to 2016-11-07 >> BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter >> ENH: Create itk_module_add_library macro >> BUG: Update computeCodeCoverageLocally.sh for KWStyle addition >> COMP: Install a newer version of CMake on CircleCI >> ENH: Use GitHub Pages as the first ExternalData resource >> ENH: Add tests to demonstrate OSX dynamic_cast failure >> BUG: Use random seed with for MersenneTwisterRandomVariateGenerator. >> BUG: Enable program global timestamp >> BUG: Set random number seed in Mattes metric test >> BUG: Notify builder that ITK_DYNAMIC_LOADING is required with >> wrapping >> BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON >> BUG: Set random number seed mutual information metric tests >> BUG: Wrap std::vector< itk.Point > >> BUG: Fix wrapping of LandmarkBasedTransformInitializer >> BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter >> DOC: Add D?enan Zuki? to .mailmap >> >> Max Smolens (4): >> COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field >> BUG: CID-1355438 QuadEdgeTest1 resource leaks >> COMP: CID-1355472 MIRegistrationFunction unused value >> COMP: Fix link errors for VNL template instantiations on Windows >> >> Mayeul Chassagnard (7): >> BUG: Test added and error fixed in HDF5ImageIO >> ENH: Update add_library TO itk_module_add_library >> COMP: Set Policy CMP0023 target_link_libraries for >> Modules/ThirdParty/VNLI... >> BUG: Add ITK_TEMPLATE_EXPORT to template classes >> BUG: Fix errors linked to dyn_cast merge >> BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes >> BUG: dash3win7 dashboard build error unresolved external symbol >> >> Michka Popoff (3): >> ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 >> ENH: Update igenerator.py for pygccxml v1.8.0 >> COMP: Use pygccxml's public API for apply definitions >> >> Pierre Barbier de Reuille (2): >> COMP: Fix function naming error when using FFTWD >> COMP: Fix function naming error when using FFTWD >> >> Sean McBride (1): >> COMP: Bypass HDF5 bugs under TSan >> >> Simon Rit (2): >> COMP: remove C++11 compiler warning for CUDA compilations >> COMP: remove C++11 compiler warning for CUDA compilations >> >> Somesh Kashyap (2): >> BUG: Override TransformCategoryType for >> AzimuthElevationToCartesianTransform >> BUG: -Added test case for itkAzimuthElevationToCartesianTransform >> >> Sumedha Singla (1): >> ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote >> module >> >> Taylor Braun-Jones (4): >> COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is >> enabled >> COMP: Fix truncation from double to float warning >> DOC: Fix incorrect itkFactorylessNewMacro documentation >> COMP: Only include the headers for required OpenCV modules >> >> Thien Nguyen (1): >> PERF: SmapsFileParser unnecessary dynamic_cast >> >> VXL Maintainers (4): >> VNL 2016-05-15 (14f97ab4) >> VNL 2016-06-22 (23a93adb) >> VNL 2016-06-29 (d62a2d70) >> VNL 2016-07-06 (acfa62cc) >> >> Vladimir S. FONOV (1): >> COMP: Build against GCC 5.3.1 >> >> Zach Williamson (2): >> ENH: Update Remote Module Tags >> BUG: Fix Python Wrappings in C++11 >> >> Ziv Yaniv (1): >> BUG: Metric sampling percentage accepted values outside (0.0, 1.0]. >> >> >> ITK Software Guide Changes >> ---------------------------------------- >> >> Matt McCormick (8): >> DOC: Move the location for obtaining the software >> DOC: Remove reference to ITKApps >> ENH: Bump ITK ExternalProject version to 2016-11-02 master >> DOC: Document the ITK module registry >> ENH: Bump ITK ExternalProject version to v4.11rc01 master >> DOC: Update CMake hyperlinks >> DOC: Update minimum required CMake version to 2.8.9 >> DOC: Add section on static and shared libraries. >> >> >> ITK Sphinx Examples Changes >> ------------------------------------------- >> >> Matt McCormick (6): >> BUG: Use GDCM ITK module name >> ENH: Rename ReadDICOMSeriesAndWrite3DImage >> BUG: Add tests for ReadDICOMSeriesAndWrite3DImage >> ENH: Bump ITK Superbuild version to 2016-09-20 master >> ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage >> ENH: Add Python version of CreateAnRGBImage >> >> Michka Popoff (5): >> ENH: Use same Python interpreter as ITK for wrapping tests >> BUG: Fix ResampleAnImage example (Python3) >> ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRe >> gionOfAnImage >> ENH: Add 7 Python examples to Core/Common >> ENH: Add BoundingBoxOfAPointSet Python example >> >> >> ----------------------------------------------------- >> Errors or omissions? Please fix them here: >> >> >> https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFr >> A54KRvf__4oeT0ymzZg/edit >> _______________________________________________ >> Powered by www.kitware.com >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/opensource/opensource.html >> >> Kitware offers ITK Training Courses, for more information visit: >> http://kitware.com/products/protraining.php >> >> Please keep messages on-topic and check the ITK FAQ at: >> http://www.itk.org/Wiki/ITK_FAQ >> >> Follow this link to subscribe/unsubscribe: >> http://public.kitware.com/mailman/listinfo/insight-developers >> > > > _____________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Kitware offers ITK Training Courses, for more information visit: > http://www.kitware.com/products/protraining.php > > Please keep messages on-topic and check the ITK FAQ at: > http://www.itk.org/Wiki/ITK_FAQ > > Follow this link to subscribe/unsubscribe: > http://public.kitware.com/mailman/listinfo/insight-users > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dzenanz at gmail.com Thu Jan 19 13:21:06 2017 From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=) Date: Thu, 19 Jan 2017 13:21:06 -0500 Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.11 Release Candidate 2 is ready for testing! In-Reply-To: References: Message-ID: A new reply in that bug report: Hi, there's a lag when we, the compiler team, tags the bug resolved and the fix actually gets included in the VS release. We apologize for that, it's just the way how engineering works to get everything ready in VS to be shipped. This specific bug has been fixed for the VS2017 RC3 release, which is only days away from shipping. If you'd you like to validate your project before that with a private Nuget package of the compiler toolset, then please send me an email here (batul at Microsoft dot com), and I can get you going. On Thu, Jan 19, 2017 at 12:46 PM, D?enan Zuki? wrote: > Hi Taylor, > > I submitted a bug > > report to Microsoft about it, and somebody said they will add ITK to their > compiler test suite. Also, that crashing bug was supposedly fixed for > "final release". > > Regards, > D?enan > > On Thu, Jan 19, 2017 at 12:18 PM, Taylor Braun-Jones < > taylor at braun-jones.org> wrote: > >> Any chance the 4.11 release could have at least some preliminary support >> for VS2017? Right now it crashes the compiler: >> >> C:\src\itk\modules\core\common\include\itkPromoteType.h(97): fatal error >> C1001: An internal error has occurred in the compiler. >> (compiler file 'msc1.cpp', line 1469) >> To work around this problem, try simplifying or changing the program >> near the locations listed above. >> Please choose the Technical Support command on the Visual C++ >> Help menu, or open the Technical Support help file for more information >> Internal Compiler Error in C:\PROGRA~2\MIB055~1\2017\COMM >> UN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe. You will be >> prompted to send an error report to Microsoft later. >> INTERNAL COMPILER ERROR in 'C:\PROGRA~2\MIB055~1\2017\COM >> MUN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe' >> Please choose the Technical Support command on the Visual C++ >> Help menu, or open the Technical Support help file for more >> information >> >> Taylor >> >> On Mon, Jan 16, 2017 at 4:18 PM, Matt McCormick < >> matt.mccormick at kitware.com> wrote: >> >>> On behalf of the Insight Toolkit community, we are proud to announce >>> that ITK 4.11 release candidate 2 has been tagged and is available for >>> testing! Please take this opportunity to test the new features in the >>> release candidate. >>> >>> >>> To obtain the source code, use the links: >>> >>> >>> https://github.com/Kitware/ITK/archive/v4.11rc02.zip >>> https://github.com/Kitware/ITK/archive/v4.11rc02.tar.gz >>> >>> or >>> >>> git clone https://itk.org/ITK.git >>> cd ITK >>> git checkout -q --detach v4.11rc02 >>> >>> For more details, please see the Git documentation [1]. >>> >>> >>> A few selected highlights for this release: >>> >>> - Remote Modules were added to: perturb mesh vertices with additive >>> gaussian noise, accurately benchmark computational performance, >>> perform principal components analysis of scalar, vector, and mesh >>> vertex data, create a run-length encoded memory compression scheme for >>> itk::Image, run N-D morphological contour interpolation, interpolate >>> multi-label images, iterate over multiple images simultaneously, and >>> compute inverse displacement fields. >>> - NumPy bridge support is now enabled by default with NumPy array >>> views of multi-component images and VNL vectors and matrices. >>> - Internal HDF5 was updated to the latest upstream version along >>> with a number of other third-party libraries. >>> >>> >>> This release introduces a new template class export specification >>> macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated >>> classes to address failing dynamic_cast's and exception catching >>> across binaries on Mac OSX. >>> >>> Bugs were addressed and improvements were made to how the >>> pseudo-random number generator is used. Tests that rely on the random >>> number generator should explicitly set the global seed at start: >>> >>> itk::Statistics::MersenneTwisterRandomVariateGenerator::GetI >>> nstance()->SetSeed( >>> 121212 ); >>> >>> To improve randomness, new instances of the generator start from a >>> different seed; some minor differences in the output of algorithms >>> that uses the generator, like mutual information metrics, should be >>> expected. >>> >>> Additionally, output may change for registration with composite affine >>> transforms; the v4 registration framework now uses corner sampling as >>> opposed to random sampling to estimate their parameter scales. >>> >>> >>> Please test the release candidate and share your experiences on the >>> mailing list, issue tracker, and Gerrit Code Review. >>> >>> >>> An Experimental build, which demonstrates how the test suite performs >>> on your local build system, can be submitted to the dashboard [2] >>> with: >>> >>> mkdir ../ITK-build >>> cd ../ITK-build >>> cmake ../ITK >>> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit >>> >>> Visual Studio builds must also add ?-C Release? to the ctest command. >>> >>> Notify the mailing list if there are any unexpected failures. Testing >>> your own applications against the RC is also appreciated. >>> >>> >>> Congratulations to the 31 contributors to this release. We would >>> especially like to recognize the new contributors: Hastings Greer, >>> Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, >>> Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss >>> Jallais. >>> >>> >>> The 4.11.0 final release is scheduled for January 23rd. >>> >>> >>> [1] http://www.itk.org/Wiki/ITK/Git >>> >>> [2] http://open.cdash.org/index.php?project=Insight >>> >>> >>> New Features >>> ------------ >>> >>> * Wrapping Improvements >>> - Python GetArrayFromImage() and GetImageFromArray() from >>> ITKBridgeNumPy are directly accessible from the Python itk namespace. >>> - The itk package loads much faster: individual modules are loaded >>> only when required. >>> - Conversion of ITK images from and to NumPy array using Bridge >>> NumPy supports RGB, RGBA, and Vector images. >>> - VNL vectors and VNL matrices can be converted from and to NumPy >>> objects with respectively the new couple of functions >>> GetArrayFromVnlVector()/GetVnlVectorFromArray() and >>> GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() >>> - The global timestamp is used across all ITK Python modules when >>> built statically >>> - Wrap additional classes such as KernelFunctionBase >>> - itk_python_add_test CMake function added for Python script testing >>> in ITK modules >>> >>> * New Remote Modules >>> - DVMeshNoise >>> - Perturbing mesh vertices with additive gaussian noise >>> - http://hdl.handle.net/10380/3567 >>> - PerformanceBenchmarking >>> - Accurate benchmarking of computational performance >>> - http://hdl.handle.net/10380/3557 >>> - PrincipalComponentsAnalysis >>> - Principal components analysis of scalar, vector, and mesh vertex >>> data >>> - http://hdl.handle.net/10380/3386 >>> - RLEImage >>> - Run-length encoded memory compression scheme for itk::Image >>> - http://hdl.handle.net/10380/3562 >>> - MorphologicalContourInterpolation >>> - N-D morphological contour interpolation >>> - http://hdl.handle.net/10380/3563 >>> - GenericLabelInterpolator >>> - A generic interpolator for multi-label images >>> - http://hdl.handle.net/10380/3506 >>> - MultipleImageIterator >>> - Iterate over multiple images simultaneously >>> - http://hdl.handle.net/10380/3455 >>> - FixedPointInverseDisplacementField >>> - Computes inverse displacement field >>> - http://hdl.handle.net/10380/3222 >>> >>> * Core Improvements >>> - New ITK_TEMPLATE_EXPORT for templated classes resolves >>> cross-binary dynamic_cast on Mac OSX >>> - New MersenneTwisterRandomVariateGenerator instances are >>> initialized with different seeds >>> - Use compiler feature detection in CMake for C++11 features, etc. >>> - New CMake macro itk_module_add_library for creating libraries in ITK >>> modules >>> - Improved support for ccache and distcc with >>> CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) >>> - Support for .sha512 ExternalData content links >>> - GitHub Pages and data.kitware.com ExternalData repositories added >>> - GPGPU system support for C++11 >>> - Support of new compilers: Visual Studio 15 and XCode 8.2.1 >>> (clang-800.0.42.1) >>> >>> * Filtering Improvements >>> - HessianToObjectnessMeasure moved out of the ITKReview module >>> - New UnsharpMaskImageFilter for image edge enhancement >>> >>> * IO Improvements >>> - TransformFactory class has been moved to a separate module >>> - Spline order added to BSplineTransform identifier >>> - Improved NIFTI orientation support >>> >>> * Documentation Improvements >>> - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples >>> >>> * Third Party Library Updates >>> - pygccxml updated to v1.8.0 >>> - VNL updated to latest upstream (2016.07.06) >>> - SWIG updated to v3.0.11 >>> - KWSys updated to latest upstream (2016.11.21) >>> - HDF5 updated to v1.8.17 >>> - SCIFIO updated to latest upstream (2016.12.01) >>> - DCMTK updated to 3.6.1_20121012 >>> - CastXML to latest upstream (2016.01.28) >>> >>> * Improved Code Coverage -- we are at 85.44%! >>> - Jon Haitz-Legarreta's extensive code coverage improvements >>> - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ >>> >>> * *Lots* of important bug fixes >>> >>> * And much more! See details in the log below. >>> >>> >>> Changes from v4.11rc01 to v4.11rc02 >>> ----------------------------------- >>> >>> Bradley Lowekamp (5): >>> BUG: Remove unused SimpleImageRegistrationTest baselines >>> ENH: Expose GetNextSeed method in MersenneTwiseter Generator >>> BUG: Add option for fixed seed or wall clock seed for sampling >>> BUG: Use metric random seed in v3 examples >>> BUG: Prefer setting seed at algorithm in "v4" tests. >>> >>> Francois Budin (3): >>> ENH: Update BridgeNumPy to latest version on 2017.01.08 to address >>> ITK-3511 >>> BUG: Extra \$ in doxygen comment >>> BUG: Binary include directory added only if enabled shared >>> >>> Jon Haitz Legarreta (2): >>> DOC: Document itkLabelOverlapMeasuresImageFilter methods. >>> DOC: Fix ITKImageNoise filters' doc TeX errors. >>> >>> Matthew McCormick (1): >>> BUG: Remove invalid ImageRegistration4Test.png.sha512 >>> >>> Max Smolens (1): >>> DOC: Fix itkUnsharpMaskImageFilter documentation typos >>> >>> Simon Rit (1): >>> BUG: ITK-based software was crasing when thread creation failed >>> >>> >>> Changes from v4.10.0 to v4.11rc01 >>> --------------------------------- >>> >>> Bill Lorensen (4): >>> COMP: Restore support for clang 3.0 compiler >>> COMP: Consistent use of ModifiedTimeType >>> ENH: Bump WikiExamples remote module version >>> ENH: Bump WikiExamples version >>> >>> Bradley Lowekamp (57): >>> ENH: Add registered TrasformIO's to exception >>> ENH: Use template or constant for loop stop condition >>> ENH: Updating SWIG version to 3.0.9 >>> COMP: Address VS9 ambiguous std::abs call in Haung calculator >>> COMP: Fix undefined NumericTraits::Zero and One errors with mingw64 >>> BUG: Fix segfault if ~CleanUpObjectFactory called multiple times >>> BUG: Address itkHDF5ImageIO test failures for mingw64 >>> BUG: demonstrate dynamic_cast failure when reading transforms >>> BUG: Address itkHDF5ImageIO test failures for mingw64 >>> ENH: Updating SWIG version to 3.0.10 >>> ENH: Enable CMP0063 New behavior >>> COMP: Enable hidden visibility property with vxl static libraries >>> COMP: Enable hidden visibility property with HDF5 static libraries >>> COMP: Enable hidden visibility property with HDF5 static libraries >>> BUG: Match Add2 function to AddImageFilter documentation >>> ENH: Improve support for std::complex with PowImageFilter >>> ENH: Explicitly mark required files for dependent tests >>> COMP: Bypass XCode 7.3,8 internal compilation error >>> COMP: Address CMake configuration error with itkJPEG2000Test03 >>> property >>> BUG: Correct test's REQUIRED_FILES to only the input. >>> ENH: move HessianToObjectnessMeasure filter out of Review >>> ENH: Separate TransformFactory class into separate module >>> DOC: Add links between similar label to rgb filters >>> ENH: Separate data from function calls >>> COMP: Fix changed Graft method >>> ENH: Reduce template dependencies on CalculateRotationMatrix >>> ENH: Add Functor Accessors to LabelMapToRGB filter >>> BUG: Enable VirtualDomain and FixedTransform in RegMethv4 >>> BUG: Use BSpline Order 3 for 2D in transform factory. >>> ENH: Add spline order to BSplineTransform's string id >>> ENH: Adding initial CircleCi configuration file >>> COMP: Fix float to unsigned integer conversion warnings >>> BUG: Include installed modules in ITK_MODULES_ENABLED >>> COMP: Address CMake error that ITKGPUCommon is not in export >>> COMP: Address wrong library types with VS and shared libraries >>> BUG: Ensure CreateImageIO is concurrent thread safe >>> ENH: Mark HDF5 CMake options as internal >>> COMP: Add template export declaration for ParametricPath >>> COMP: Correct TEMPLATE_EXPLICIT definition in Path module >>> ENH: Factor out common code in the TrasformFactoryBase registration >>> ENH: Add CMake variable for max transform dimension, defaults 4 >>> ENH: Create CMake module to check for private RTTI compatibility >>> ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT >>> COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT >>> BUG: Add explicit instantiate for ObjectToObjectOptimizerBase >>> COMP: Use add_definitions for CMake 2.8.9 compatibility >>> COMP: Add warning suppression for distcc warning >>> ENH: Explicitly instantiate the optimizer base over float >>> BUG: Use IsLinear to check if transform is "affine" >>> ENH: Remove unneeded includes of random iterator header >>> ENH: Improve thread-safety for Generator, and unique New sequence >>> ENH: Do not use global random generator >>> BUG: Update v3 registration metrics to use local seed >>> ENH: Prefer setting local seed over global in tests. >>> ENH: Update SWIG to latest 3.0.11 release >>> BUG: relax testing parameters for v3 translation registration >>> BUG: Restore baseline for debug registration >>> >>> Caspar Goch (2): >>> BUG: Use printable type for RGBA pixel ostream for ITK-3501 >>> STYLE: Remove extra space for ITK-3501 >>> >>> Christina Rossmanith (1): >>> DOC: Added more details to the class Doxygen documentation. >>> >>> Davis Vigneault (2): >>> COMP: VCL_DEFINE_SPECIALIZATION not defined >>> ENH: Add remote module DVMeshNoise >>> >>> D?enan Zuki? (27): >>> BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) >>> ENH: Adding MultipleImageIterator as a remote module >>> COMP: enables TBB 4.4 back-end for VTK7's SMP >>> COMP: enabling position independent code flag for FFTW >>> ENH: adding configuration file for code reformatting tool >>> clang-format >>> ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 >>> COMP: Fixing -fPIC flag passing with Ninja build system >>> ENH: Adding RLEImage as a remote module >>> ENH: Updating uncrustify configuration to current git version >>> STYLE: better compliance with ITK style >>> STYLE: A new option in uncrustify, updating the config file >>> accordingly >>> ENH: Adding MorphologicalContourInterpolation as a remote module >>> ENH: improving documentation >>> BUG: fixing buffer growing endlessly, as reported by Timothee Evain >>> BUG: fixing buffer growing endlessly, as reported by Timothee Evain >>> STYLE: default uncrustify configuration file is less aggressive >>> COMP: Fixing warning >>> COMP: VS15 compiler fix >>> BUG: casting -9 to unsigned produced unwanted result >>> BUG: Ensuring consistency between debug and release >>> COMP: Updating LesionSizingToolkit after some recent compile fixes >>> COMP: respect option METAIO_USE_NAMESPACE >>> ENH: updating version of AnisotropicDiffusionLBR >>> ENH: adding UnsharpMaskingImageFilter >>> COMP: explicitly cast to output type >>> BUG: double call to update would cause empty output image >>> ENH: Updating RLEImage remote module. Change-log: >>> >>> Eugene Prilepin (4): >>> ENH: Add the "ITK_USE_GPU" to ITK Config >>> BUG: Fix API for set/get "LaplacianImageFilter" object >>> ENH: Add support of images types with the 'CovariantVector' pixel >>> type >>> ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap >>> >>> Francois Budin (52): >>> ENH: Adding GetArrayFromImage in python itk namespace >>> ENH: Adding GetImageFromArray in python itk namespace >>> ENH: *_WRAP_* variable per external module >>> BUG: ImportImageFilter not responsible of memory management >>> ENH: New remote module GenericLabelInterpolator >>> DOC: SetNumberOfOutputs had wrong comment >>> BUG: lazyAttributes dictionary keys could be over-ridden >>> BUG: lazyAttributes dictionary keys could be over-ridden >>> BUG: Fix recent update of HDF5 (1.8.17) >>> ENH: Update SCIFIO to latest version on 08/23/2016 >>> ENH: Addition of the remote module FixedPointInverseDisplacementF >>> ield >>> ENH: Update SCIFIO to latest version on 08/29/2016 >>> BUG: Path to commit was relative instead of absolute >>> ENH: Path to SetupForDevelopment is relative, not absolute >>> BUG: LSMImageIO write function was not checking image dimension >>> BUG: LSMImageIO was not checking correctly image dimension >>> BUG: Missing associated test data >>> BUG: Missing associated test data >>> ENH: Bump CMakeLists.txt version to 4.10.1. >>> BUG: Quotes are not escaped in configured cmake file >>> ENH: Improving API of Graft() in itk::Image >>> ENH: Updating ITKGenericLabelInterpolator remote module >>> ENH: Update ITKIOTransformDCMTK remote module >>> BUG: Factory registration should depend on ITK_BUILD_SHARED >>> COMP: Updating DCMTK compilation for Ninja >>> ENH: Update version of DCMTK to 3.6.1_20121012 >>> ENH: Update SCIFIO to latest version on 10/25/2016 >>> BUG: Swig and PCRE do not support space in installation paths >>> BUG: exit() call from within piped commands was not exiting the >>> script >>> BUG: Typo in folder creation command >>> ENH: Only display message for transform registered multiple times >>> in debug >>> ENH: Image spacing must be positive >>> BUG: Supported extensions by PNG IO were not added in constructor. >>> DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. >>> ENH: Update SCIFIO to lastest (2016.12.01) >>> ENH: FixedPointInverseDisplacementField moved to >>> InsightSoftwareConsortium >>> COMP: Remove compilation warnings >>> ENH: Improved support of ccache and distcc >>> BUG: GPUImage regression due to API change. >>> ENH: Update Bridge Numpy (2016.12.05) >>> ENH: Update VariationalRegistration to remove warnings during >>> compilation >>> ENH: FindPythonLibs does not support both debug and release >>> python libraries >>> ENH: Update VariationalRegistration >>> BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of >>> itk::ImageBase >>> BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper >>> BUG: Missing ITK_TEMPLATE_EXPORT in templated class >>> BUG: Remove linkage warnings on MacOS >>> BUG: HDF5 CMake installation directory variable had not been updated >>> BUG: Missing include header in AnisotropicDiffusionBLR remote >>> module hxx files >>> COMP: Silencing unused variable warning in itkTimeStamp >>> STYLE: Improve style checking by using module >>> ITKKWStyleOverwrite.txt >>> COMP: OS*Barrier functions are deprecated on MacOS 10.12 >>> >>> GCC-XML Upstream (1): >>> ENH: pygccxml v1.8.0 (reduced) >>> >>> Gert Wollny (1): >>> BUG: Relax vnl_complex floating point comparisons for i386 >>> >>> Gilles Filippini (1): >>> BUG: Use NATIVE_HBOOL for encoding HDF5 types. >>> >>> HDF Group (1): >>> ENH: hdf5 1.8.17-r30218 (reduced) >>> >>> Hans Johnson (23): >>> COMP: Use cmake WriteCompilerDetectionHeader >>> ENH: Use itk_compiler_detection versions >>> COMP: Need ITK_NOEXCEPT_OR_THROW macro. >>> COMP: Provide consistent granular C++11 support >>> STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT >>> STYLE: Prefer to use consistent definitions >>> COMP: Improve robustness of identifying the compiler standard used >>> BUG: try_compile for AlignAs were always failing >>> STYLE: Provide a well documented macro for repeated code >>> STYLE: Delete functions in consistent way >>> COMP: GPU baseclass ivars need to be protected >>> COMP: Remove unnecessary circular dependancy >>> COMP: Add long long usage for HDF5 >>> COMP: Add long long usage for HDF5 >>> STYLE: Prefer static small array to dynamic array >>> BUG: Confusing interface for FFTW wisdom files >>> STYLE: Output dimension from OutputImageType >>> STYLE: Code review style cleanups >>> STYLE: Prefer to use ITK AssertOrThrow macros >>> ENH: Add OverrideBoundaryCondition logic >>> ENH: Provide mechanism for enhanced NIFTI support >>> BUG: Use NIFTI sform/qform conventions correctly >>> ENH: Remove ambiguity about sform/qform >>> >>> Hastings Greer (8): >>> BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically >>> BUG: make itkTriangleHelper instantiable to ease wrapping >>> BUG: remove lsqr because of license issues ITK 1160 >>> BUG: make itkTriangleHelper instantiable to ease wrapping >>> BUG: initialize X to zero in lsmr Solve >>> BUG: Labled Point Set Registration: test multiple labels >>> BUG: Fix python wrapping of Cuberille remote module >>> BUG: Add test demonstrating Python global timestamp issue >>> >>> Jean-Christophe Fillion-Robin (5): >>> STYLE: UseITK: Set ImageIO exceptions using new convention. See >>> #3393 >>> STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 >>> STYLE: Update MeshIO factories to use RegisterFactoryInternal. See >>> #3393 >>> STYLE: MeshIO: Move MeshFileWriterException into its own file. See >>> #3393 >>> STYLE: MeshIO: Remove unused include from headers. See #3393 >>> >>> Johan Andruejol (3): >>> ENH: Add missing itkKernelFunctionBase wrapping >>> ENH: Add PrincipalComponentsAnalysis remote module >>> COMP: Override cannot be used with inline >>> >>> Jon Haitz Legarreta (216): >>> ENH: Improve itkFlatStructutingElement coverage. >>> ENH: Improve itkPathToImageFilter class coverage. >>> ENH: Improve itkIsolatedWatershedImageFilter coverage. >>> ENH: Improve itkLogSigmoidTransferFunction coverage. >>> STYLE: Improve itkBSplineTransform doc style. >>> ENH: Improve GaborKernelFunctionCoverage. >>> PERF: Remove duplicate itkMath include >>> STYLE: Move the PrintSelf method to the end >>> STYLE: Improve the itkScalarToRGBColormapImageFilter style. >>> STYLE: Delete duplicate method documentation >>> STYLE: Remove method documentation from implementation file >>> STYLE: Improve GACLevelSet classes' style >>> STYLE: Improve test style >>> ENH: Improve itkGaussianDerivativeImageFilter coverage. >>> ENH: Improve the itkScalarToRGBColormapImageFilter coverage >>> STYLE: Improve itkScalarToRGBColormap test style >>> ENH: Improve GACLSImageFilter classes' coverage >>> STYLE: Improve comment style in GACLS tests >>> ENH: Improve itkImportImageFilter coverage >>> ENH: Improve itkVideoFileReader coverage >>> ENH: Improve itkVideoFileWriter coverage >>> STYLE: Improve the itkVideoFileWriter style. >>> STYLE: Imrpove itkVideoFileReader style. >>> ENH: Improve the itkBSplineControlPointImageFunction coverage >>> STYLE: Improve the itkIntensityWindowingImageFilter style >>> STYLE: Improve the itkIntensityWindowingImageFilter test style >>> ENH: Improve ImageToSpatialObjectRegistrationMethod coverage >>> STYLE: Improve test style >>> ENH: Improve MaskNeighborhoodOperatorImageFilter coverage >>> ENH: Improve itkMeshFileWriter coverage >>> ENH: Improve RescaleIntensityImageFilter coverage. >>> ENH: Improve itkClampImageFilter coverage. >>> BUG: Fix ivar type casting in PrintSelf. >>> STYLE: Improve MRIBiasFieldCorrectionFilter style. >>> ENH: Improve MRIBiasFieldCorrectionFilter coverage. >>> ENH: Improve itkIntensityWindowingImageFilter coverage >>> BUG: Fix Run-time type information in CSV module classes. >>> ENH: Improve the itkHistogram class code coverage. >>> DOC: Fix documentation typo. >>> STYLE: Improve the ImproveRescaleIntensityImageFilter style. >>> PERF: Make the itkVideoFileReader ivars private >>> PERF: Make itkVideoFileWriter ivars private >>> ENH: Improve coverage for itk::OrientImageFilter. >>> STYLE: Improve itk::OrientImageFilter class style. >>> ENH: Improve itkCSVNumericObjectFileWriter coverage. >>> ENH: Add missing standard class typdefs. >>> ENH: Improve itkVoronoiSegmentationImageFilter coverage. >>> ENH: Improve itkVoronoiSegmentationImageFilter style. >>> STYLE: Improve the MalahanobisDistanceThresholdImageFunction style. >>> ENH: Improve coverage for itkMalahanobisDistanceThreshold. >>> ENH: Improve itk::MinimumMaximumImageCalculator coverage. >>> ENH: Improve itkMinimumMaximumImageCalculator style. >>> BUG: Fix type mismatch in test. >>> STYLE: Improve itkPolylineMaskImagefilter style. >>> ENH: Improve itkPolylineMaskImageFilter coverage. >>> ENH: Improve itkFileListVideoStyle. >>> ENH: Improve itkLandmarkBasedTransformInitializer coverage. >>> ENH: Add baseline image to itkPolylineMaskImageFilter test. >>> ENH: Improve coverage for itkBSplineTransformInitializer. >>> STYLE: Improve itkBSplineTransformInitializer doc style. >>> ENH: Enhance itkBSplineTransformInitializer implementation. >>> DOC: Fix typo in method documentation. >>> ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. >>> STYLE: Improve the itkSimpleContourExtractorImageFilter style. >>> ENH: Exercise the class' Get methods. >>> ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. >>> ENH: Improve style for itkThresholdLabelerImageFilter. >>> ENH: Improve itkThresholdLabelerImageFilter coverage. >>> ENH: Get internal ImageIO via a const macro. >>> ENH: Improve the itkSimpleContourExtractorImageFilter coverage. >>> STYLE: Improve the itkMetaArray class style. >>> ENH: Improve MetaArrayReader/Writer coverages. >>> ENH: Improve the itkCovarianceImageFunction style. >>> STYLE: Improve itkVoronoiDiagram2DGenerator style. >>> ENH: Improve VoronoiDiagram2DGenerator coverage. >>> STYLE: Improve the itkBayesianClassifierImageFilter style. >>> STYLE: Improve the itkMetaArrayWriter style. >>> ENH: Improve itkCovarianteImageFunction coverage. >>> COMP: Fix signed/unsigned int comparison warning. >>> DOC: Improve itkGrayscaleDilateImageFilter documentation. >>> DOC: Improve documentation for itkGrayscaleErodeImageFilter. >>> DOC: Improve ConfigureHistogram method documentation. >>> STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. >>> BUG: Fix Superclass name in RTTI. >>> STYLE: Improve itkGaussianInterpolateImageFunction style. >>> ENH: Improve coverage for itkGaussianInterpolateImageFunction. >>> ENH: Improve itkBayesianClassifierImageFilter coverage. >>> ENH: Add itkBSplineControlPointImageFilter RTTI. >>> STYLE: Improve itkBSplinecontrolPointImageFilter style. >>> ENH: Improve itkBSplineControlPointImageFilter coverage. >>> ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4. >>> STYLE: Improve the class implementation file style. >>> STYLE: Improve the itkResampleImageFilter style. >>> DOC: Fix typo in GetMTime method doc. >>> STYLE: Remove out-of-body implementation doc >>> ENH: Improve itkResampleImageFilter coverage. >>> ENH: Improve itkAbsImageAdaptor and Filter coverage. >>> BUG: Fix itkLSMImageIO class' Superclass name. >>> ENH: Improve the itkInterpolateImagePointsFilter coverage. >>> ENH: Improve itkPowImageFilter coverage. >>> BUG: Fix ConvolutionImageFilter RTTI. >>> STYLE: Use initialization lists. >>> STYLE: Improve BinaryFunctorImageFilter style. >>> ENH: Improve itkMinimumImageFilter code coverage. >>> BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. >>> ENH: Improve MaximumImageFilter coverage. >>> BUG: Fix conversion to PixelType conversion. >>> COMP: Fix double to unsigned char conversion warning. >>> ENH: Improve coverage for itkNormalizeToConstantImageFilter. >>> BUG: Fix itkSquaredDifferenceErrorFunction RTTI. >>> ENH: Improve itkMeanImageFunctionCoverage. >>> ENH: Improve itkSquareImageFilter coverage. >>> STYLE: Improve the itkSquaredDifferenceErrorFunction style. >>> STYLE: Enhance style for itkNormalizeToConstantImageFilter. >>> STYLE: Improve itkMeanImageFunction style. >>> ENH: Remove unnecesary call to filter print. >>> ENH: Improve itkRegionOfInterestImageFilter coverage. >>> STYLE: Improve itkRegionOfInterestImageFilter style. >>> STYLE: Improve itkPasteImageFilter style. >>> STYLE: Improve itkJoinSeriesImageFilter style. >>> BUG: Fix itkPadLabelMapFilter RTTI Superclass. >>> COMP: Address std::cout.precision conversion warning. >>> ENH: Improve itkBayesianClassifiertImageFilter coverage. >>> ENH: Improve itkPadLabelMapFilter coverage. >>> ENH: Improve itkJoinSeriesImageFilter coverage. >>> ENH: Improve the itkPasteImageFilter coverage. >>> ENH: Improve MeanImageFilter coverage. >>> COMP: Address std::cout.precision conversion warning. >>> ENH: Improve TernaryMagnitudeImageFilter coverage. >>> ENH: Improve FFTConvolutionImageFilter coverage. >>> DOC: Fix class documentation in ternary magnitude filters. >>> ENH: Improve ConstrainedValueDifferenceImageFilter coverage. >>> ENH: Improve AndImageFilter coverage. >>> ENH: Add baseline test to itkTernaryMagnitudeImageFilter. >>> ENH: Use MD5 comparison framework in baseline test. >>> ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. >>> STYLE: Improve the itkVectorRescaleIntensityImageFilter style. >>> ENH: Print missing ivar in filter PrintSelf method. >>> ENH: Improve itkComplexToImaginaryFilter coverage. >>> ENH: Improve itkComplexToPhaseImageFilter coverage. >>> ENH: Improve itkComplexToModulusImageFilter coverage. >>> ENH: Improve itkComplexToRealImageFilter coverage. >>> ENH: Improve itkVectorResampleImageFilter coverage. >>> ENH: Add GetTransform method. >>> ENH: Improve itkConstrainedValueAdditionImageFilter coverage. >>> ENH: Improve itkModulusImageFilter coverage. >>> ENH: Improve itkLog10ImageFilter coverage. >>> ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. >>> ENH: Improve itkLogImageFilter coverage. >>> ENH: Improve itkInvertIntensityImageFilter coverage. >>> STYLE: Improve itkInvertIntensityImageFilter style. >>> DOC: Add missing doc to itkInvertIntensityImageFilter. >>> STYLE: Improve itkIntensityWindowingImageFilter style. >>> STYLE: Use initialization lists. >>> ENH: Improve itkIntensityWindowingImageFilter coverage. >>> ENH: Improve itkNaryMaximumImageFilter coverage. >>> COMP: Fix std::precision type casting warning. >>> ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. >>> STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod >>> style. >>> ENH: Remove SmartPointers being explicitly initialized to null. >>> STYLE: Improve the itkPointSetToImageRegistrationMethod style. >>> ENH: Improve itkPointSetToImageRegistration coverage. >>> STYLE: Change the name of the itkPointSetToImageRegistrationMethod >>> test. >>> STYLE: Improve itkVectorResampleImageFilter style. >>> STYLE: Improve the itkAntiAliasBinaryImageFilter style. >>> ENH: Improve trigonometric function filters' coverage. >>> STYLE: Remove test names from std::out messages. >>> ENH: Improve Boolean Algebra ImageFilters coverage. >>> STYLE: Improve the EuclideanDistancePointMetric style. >>> ENH: Improve itkSigmoidImageFilter coverage. >>> STYLE: Improve itkCropImageFilter style. >>> ENH: Improve itkCropImageFilter coverage. >>> ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. >>> ENH: Improve itkRescaleIntensityImageFilter coverage. >>> ENH: Improve the itkMatrixSelectionImageFilter coverage. >>> ENH: Improve itkTanImageFilter and Adaptor coverage. >>> ENH: Increase itkSqrtImageFilter and Adaptor coverage. >>> ENH: Increase itkTernaryOperatorImageFilter coverage. >>> ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. >>> STYLE: Improve itkScalarImagekmeansImageFilter style. >>> STYLE: Conform to TEST_SET_GET_VALUE definition. >>> BUG: Fix uninitialized variable due to dynamic analysis defect. >>> BUG: Fix uninitialized variable defect reported by valgrind. >>> ENH: Improve the itkPointSetToPointSetRegistrationTest. >>> ENH: Improve the itkPointSetToImageRegistrationTest. >>> ENH: Increas BinaryMagnitudeImageFilter coverage. >>> STYLE: Remove test name from std output. >>> ENH: Increase MagnitudeImageFilter coverage. >>> BUG: Fix uninitialized variable defect reported by valgrind. >>> BUG: Fix Superclass name in RTTI. >>> STYLE: Improve itkFrustumSpatialFunction style. >>> STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction >>> style. >>> BUG: Fix Superclass template argument list. >>> STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. >>> STYLE: Improve the itkCheckerBoardImageFilter class style. >>> ENH: Improve the itk::LabelVotingImageFilter coverage. >>> ENH: Improve itkCheckerBoardImageFilter coverage. >>> STYLE: Improve itk::LabelVotingImageFilter style. >>> STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. >>> ENH: Add test for itk::FrustumSpatialFunction class. >>> ENH: Improve itkConnectedThresholdImageFilter coverage. >>> STYLE: Improve itkConnectedThresholdImageFilter style. >>> BUG: Fix FrustumSpatialFunction internal precision conversion. >>> COMP: Fix implicit conversion warning. >>> STYLE: Improve itkThresholdImageFilter style. >>> ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. >>> BUG: Fix Superclass template argument list. >>> ENH: Improve itkUnsharpMaskingImageFilter implementation. >>> ENH: Improve the itkUnsharpMaskingImageFilter coverage. >>> ENH: Fix UnsharpMaskingImageFilter test inconsistencies. >>> BUG: Add missing itkTypeMacro. >>> DOC: Document the member variables. >>> BUG: Fix the itkImageSource RTTI class name, >>> STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style. >>> ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. >>> STYLE: Improve itkLabelOverlapMeasurementImageFilter style. >>> >>> KWSys Robot (6): >>> KWSys 2016-06-30 (96f06c8e) >>> KWSys 2016-10-23 (b630d2f5) >>> KWSys 2016-11-03 (37306a1c) >>> KWSys 2016-11-08 (2b3e2b1c) >>> KWSys 2016-11-09 (18c65411) >>> KWSys 2016-11-21 (cb55cf5a) >>> >>> Maeliss Jallais (1): >>> BUG: Add unsigned and signed short to the wrapping of vnl_matrix >>> >>> Matthew McCormick (85): >>> PERF: Simplify HilbertPath numberOfPathVertices computation. >>> BUG: CID 1355469 NNetClassifierTest4 unintended integer division. >>> BUG: Update Cuberille Remote for version check fix. >>> ENH: Bump ITK version to 4.11.0. >>> BUG: Fix HDF5ImageIO type information. >>> BUG: Fix H5File memory leak in HDF5ImageIO. >>> DOC: Collect Francois Budin's contributions in .mailmap >>> BUG: Limit WRAP_ITK_MODULES when building externally >>> STYLE: Improvements to ResourceProbe report output. >>> ENH: Add a useTabs argument to ResourceProbe::Report. >>> ENH: Add standard error measure to the ResourceProbe >>> ENH: Add itk_python_add_test function. >>> BUG: Remove VNL file from subtree merge. >>> COMP: Fix wrapping with a space in the Python include path >>> BUG: Fix PermuteAxesImageFilter pipeline method visibility >>> BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter >>> BUG: ResampleImageFilter honor isInside output of the transform >>> method >>> COMP: Avoid recursive include of itkMath.h >>> COMP: Fix VXL header installation locations >>> BUG: ClampImageFilterTest for older GCC, InPlaceOn >>> DOC: Add CONTRIBUTING.md file to the top level. >>> COMP: Update VariationalRegistration to address Doxygen warnings >>> BUG: Compiler detections file installed into ITK build tree location >>> COMP: Do not use string(TIMESTAMP. >>> COMP: Remove HDF5 -std=c99 for C++ files >>> BUG: Do not build HDF5 static library with a shared build >>> ENH: Add PerformanceBenchmarking Remote Module >>> COMP: Remove duplicate wrappings for ResampleImageFilter >>> BUG: Put Python test output files in the build tree >>> BUG: Improve HDF5ImageIO::CloseDataSet name >>> COMP: Use add_python_test PythonLazyLoadingImage >>> COMP: Address missing override it itkFactoryTestLib.cxx >>> BUG: Index,Size,Offset constructors present in Python with C++11 >>> COMP: Address missing override it itkFactoryTestLib.cxx >>> BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT >>> ENH: Bump SetupForDevelopment version >>> BUG: Add missing ZLib deflate support to HDF5 >>> BUG: Address memory leak, remove NumPy build dep in BridgeNumPy >>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >>> BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include >>> ITK_WRAP_IMAGE_DIMS >>> BUG: RichardsonLucyDeconvolutionImageFilter with non-null input >>> Image Origin >>> BUG: Fix inconsistent Twister start with Initialize(seed) and >>> SetSeed(seed) >>> BUG: Do not hard code CMake scripts in HDF5 >>> COMP: Workaround Emscripten ITKCommon test build failure >>> COMP: Do embed fancy HDF5 libsettings with Emscripten >>> COMP: Add missing H5T_patch_vlen_file declaration >>> ENH: Bump CastXML to 2016-10-11 master. >>> COMP: Workaround Emscripten ITKCommon test build failure >>> BUG: Swap CastXML hashes for Mac OSX and Windows >>> ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 >>> COMP: Fix VNL tests when cross-compiling >>> ENH: ExternalData multi-algorithm support >>> ENH: ExternalData support for data.kitware.com >>> BUG: Install missing H5pubconf.h >>> BUG: Use SpacePrecisionType in TileImageFilter >>> BUG: Use internal ExternalData_Add_Target >>> ENH: Run .sha512, .md5 simultaneous modification pre-commit check >>> BUG: Correct CastXML Windows binary >>> BUG: Support non-zero Index in LevelSetNeighborhoodExtractor >>> ENH: Add ArchiveTestingDataOnGirder.py >>> BUG: Correct AtanRegularizationHeavisideStepFunction derivative >>> ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh >>> BUG: Remove extra HessianToObjectness content links >>> ENH: Wrap SpatialFunction float types with ITK_WRAP_float >>> BUG: Bump PerformanceBenchmarking to 2016-11-04 >>> BUG: itk_python_expression_add_test too many quotes. >>> ENH: Wrap VectorImage with complex real pixel types >>> ENH: Bump PerformanceBenchmarking to 2016-11-07 >>> BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter >>> ENH: Create itk_module_add_library macro >>> BUG: Update computeCodeCoverageLocally.sh for KWStyle addition >>> COMP: Install a newer version of CMake on CircleCI >>> ENH: Use GitHub Pages as the first ExternalData resource >>> ENH: Add tests to demonstrate OSX dynamic_cast failure >>> BUG: Use random seed with for MersenneTwisterRandomVariateGe >>> nerator. >>> BUG: Enable program global timestamp >>> BUG: Set random number seed in Mattes metric test >>> BUG: Notify builder that ITK_DYNAMIC_LOADING is required with >>> wrapping >>> BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON >>> BUG: Set random number seed mutual information metric tests >>> BUG: Wrap std::vector< itk.Point > >>> BUG: Fix wrapping of LandmarkBasedTransformInitializer >>> BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter >>> DOC: Add D?enan Zuki? to .mailmap >>> >>> Max Smolens (4): >>> COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar >>> field >>> BUG: CID-1355438 QuadEdgeTest1 resource leaks >>> COMP: CID-1355472 MIRegistrationFunction unused value >>> COMP: Fix link errors for VNL template instantiations on Windows >>> >>> Mayeul Chassagnard (7): >>> BUG: Test added and error fixed in HDF5ImageIO >>> ENH: Update add_library TO itk_module_add_library >>> COMP: Set Policy CMP0023 target_link_libraries for >>> Modules/ThirdParty/VNLI... >>> BUG: Add ITK_TEMPLATE_EXPORT to template classes >>> BUG: Fix errors linked to dyn_cast merge >>> BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes >>> BUG: dash3win7 dashboard build error unresolved external symbol >>> >>> Michka Popoff (3): >>> ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 >>> ENH: Update igenerator.py for pygccxml v1.8.0 >>> COMP: Use pygccxml's public API for apply definitions >>> >>> Pierre Barbier de Reuille (2): >>> COMP: Fix function naming error when using FFTWD >>> COMP: Fix function naming error when using FFTWD >>> >>> Sean McBride (1): >>> COMP: Bypass HDF5 bugs under TSan >>> >>> Simon Rit (2): >>> COMP: remove C++11 compiler warning for CUDA compilations >>> COMP: remove C++11 compiler warning for CUDA compilations >>> >>> Somesh Kashyap (2): >>> BUG: Override TransformCategoryType for >>> AzimuthElevationToCartesianTransform >>> BUG: -Added test case for itkAzimuthElevationToCartesianTransform >>> >>> Sumedha Singla (1): >>> ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote >>> module >>> >>> Taylor Braun-Jones (4): >>> COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is >>> enabled >>> COMP: Fix truncation from double to float warning >>> DOC: Fix incorrect itkFactorylessNewMacro documentation >>> COMP: Only include the headers for required OpenCV modules >>> >>> Thien Nguyen (1): >>> PERF: SmapsFileParser unnecessary dynamic_cast >>> >>> VXL Maintainers (4): >>> VNL 2016-05-15 (14f97ab4) >>> VNL 2016-06-22 (23a93adb) >>> VNL 2016-06-29 (d62a2d70) >>> VNL 2016-07-06 (acfa62cc) >>> >>> Vladimir S. FONOV (1): >>> COMP: Build against GCC 5.3.1 >>> >>> Zach Williamson (2): >>> ENH: Update Remote Module Tags >>> BUG: Fix Python Wrappings in C++11 >>> >>> Ziv Yaniv (1): >>> BUG: Metric sampling percentage accepted values outside (0.0, 1.0]. >>> >>> >>> ITK Software Guide Changes >>> ---------------------------------------- >>> >>> Matt McCormick (8): >>> DOC: Move the location for obtaining the software >>> DOC: Remove reference to ITKApps >>> ENH: Bump ITK ExternalProject version to 2016-11-02 master >>> DOC: Document the ITK module registry >>> ENH: Bump ITK ExternalProject version to v4.11rc01 master >>> DOC: Update CMake hyperlinks >>> DOC: Update minimum required CMake version to 2.8.9 >>> DOC: Add section on static and shared libraries. >>> >>> >>> ITK Sphinx Examples Changes >>> ------------------------------------------- >>> >>> Matt McCormick (6): >>> BUG: Use GDCM ITK module name >>> ENH: Rename ReadDICOMSeriesAndWrite3DImage >>> BUG: Add tests for ReadDICOMSeriesAndWrite3DImage >>> ENH: Bump ITK Superbuild version to 2016-09-20 master >>> ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage >>> ENH: Add Python version of CreateAnRGBImage >>> >>> Michka Popoff (5): >>> ENH: Use same Python interpreter as ITK for wrapping tests >>> BUG: Fix ResampleAnImage example (Python3) >>> ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRe >>> gionOfAnImage >>> ENH: Add 7 Python examples to Core/Common >>> ENH: Add BoundingBoxOfAPointSet Python example >>> >>> >>> ----------------------------------------------------- >>> Errors or omissions? Please fix them here: >>> >>> >>> https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFr >>> A54KRvf__4oeT0ymzZg/edit >>> _______________________________________________ >>> Powered by www.kitware.com >>> >>> Visit other Kitware open-source projects at >>> http://www.kitware.com/opensource/opensource.html >>> >>> Kitware offers ITK Training Courses, for more information visit: >>> http://kitware.com/products/protraining.php >>> >>> Please keep messages on-topic and check the ITK FAQ at: >>> http://www.itk.org/Wiki/ITK_FAQ >>> >>> Follow this link to subscribe/unsubscribe: >>> http://public.kitware.com/mailman/listinfo/insight-developers >>> >> >> >> _____________________________________ >> Powered by www.kitware.com >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/opensource/opensource.html >> >> Kitware offers ITK Training Courses, for more information visit: >> http://www.kitware.com/products/protraining.php >> >> Please keep messages on-topic and check the ITK FAQ at: >> http://www.itk.org/Wiki/ITK_FAQ >> >> Follow this link to subscribe/unsubscribe: >> http://public.kitware.com/mailman/listinfo/insight-users >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dzenanz at gmail.com Thu Jan 19 14:14:41 2017 From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=) Date: Thu, 19 Jan 2017 14:14:41 -0500 Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.11 Release Candidate 2 is ready for testing! In-Reply-To: References: Message-ID: ... and more: Additionally, we've added ITK and VTK libraries from GitHub to our daily compiler testing and validations. So in short, from now on we will be releasing MSVC compiler versions to the public where live GitHub ITK and VTK sources will build clean. That's a promise :). Thanks, Ulzii Luvsanbat Visual C++ Team On Thu, Jan 19, 2017 at 1:21 PM, D?enan Zuki? wrote: > A new reply in that bug report: > > Hi, there's a lag when we, the compiler team, tags the bug resolved and > the fix actually gets included in the VS release. We apologize for that, > it's just the way how engineering works to get everything ready in VS to be > shipped. This specific bug has been fixed for the VS2017 RC3 release, which > is only days away from shipping. > > If you'd you like to validate your project before that with a private > Nuget package of the compiler toolset, then please send me an email here > (batul at Microsoft dot com), and I can get you going. > > On Thu, Jan 19, 2017 at 12:46 PM, D?enan Zuki? wrote: > >> Hi Taylor, >> >> I submitted a bug >> >> report to Microsoft about it, and somebody said they will add ITK to their >> compiler test suite. Also, that crashing bug was supposedly fixed for >> "final release". >> >> Regards, >> D?enan >> >> On Thu, Jan 19, 2017 at 12:18 PM, Taylor Braun-Jones < >> taylor at braun-jones.org> wrote: >> >>> Any chance the 4.11 release could have at least some preliminary support >>> for VS2017? Right now it crashes the compiler: >>> >>> C:\src\itk\modules\core\common\include\itkPromoteType.h(97): fatal >>> error C1001: An internal error has occurred in the compiler. >>> (compiler file 'msc1.cpp', line 1469) >>> To work around this problem, try simplifying or changing the program >>> near the locations listed above. >>> Please choose the Technical Support command on the Visual C++ >>> Help menu, or open the Technical Support help file for more information >>> Internal Compiler Error in C:\PROGRA~2\MIB055~1\2017\COMM >>> UN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe. You will be >>> prompted to send an error report to Microsoft later. >>> INTERNAL COMPILER ERROR in 'C:\PROGRA~2\MIB055~1\2017\COM >>> MUN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe' >>> Please choose the Technical Support command on the Visual C++ >>> Help menu, or open the Technical Support help file for more >>> information >>> >>> Taylor >>> >>> On Mon, Jan 16, 2017 at 4:18 PM, Matt McCormick < >>> matt.mccormick at kitware.com> wrote: >>> >>>> On behalf of the Insight Toolkit community, we are proud to announce >>>> that ITK 4.11 release candidate 2 has been tagged and is available for >>>> testing! Please take this opportunity to test the new features in the >>>> release candidate. >>>> >>>> >>>> To obtain the source code, use the links: >>>> >>>> >>>> https://github.com/Kitware/ITK/archive/v4.11rc02.zip >>>> https://github.com/Kitware/ITK/archive/v4.11rc02.tar.gz >>>> >>>> or >>>> >>>> git clone https://itk.org/ITK.git >>>> cd ITK >>>> git checkout -q --detach v4.11rc02 >>>> >>>> For more details, please see the Git documentation [1]. >>>> >>>> >>>> A few selected highlights for this release: >>>> >>>> - Remote Modules were added to: perturb mesh vertices with additive >>>> gaussian noise, accurately benchmark computational performance, >>>> perform principal components analysis of scalar, vector, and mesh >>>> vertex data, create a run-length encoded memory compression scheme for >>>> itk::Image, run N-D morphological contour interpolation, interpolate >>>> multi-label images, iterate over multiple images simultaneously, and >>>> compute inverse displacement fields. >>>> - NumPy bridge support is now enabled by default with NumPy array >>>> views of multi-component images and VNL vectors and matrices. >>>> - Internal HDF5 was updated to the latest upstream version along >>>> with a number of other third-party libraries. >>>> >>>> >>>> This release introduces a new template class export specification >>>> macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated >>>> classes to address failing dynamic_cast's and exception catching >>>> across binaries on Mac OSX. >>>> >>>> Bugs were addressed and improvements were made to how the >>>> pseudo-random number generator is used. Tests that rely on the random >>>> number generator should explicitly set the global seed at start: >>>> >>>> itk::Statistics::MersenneTwisterRandomVariateGenerator::GetI >>>> nstance()->SetSeed( >>>> 121212 ); >>>> >>>> To improve randomness, new instances of the generator start from a >>>> different seed; some minor differences in the output of algorithms >>>> that uses the generator, like mutual information metrics, should be >>>> expected. >>>> >>>> Additionally, output may change for registration with composite affine >>>> transforms; the v4 registration framework now uses corner sampling as >>>> opposed to random sampling to estimate their parameter scales. >>>> >>>> >>>> Please test the release candidate and share your experiences on the >>>> mailing list, issue tracker, and Gerrit Code Review. >>>> >>>> >>>> An Experimental build, which demonstrates how the test suite performs >>>> on your local build system, can be submitted to the dashboard [2] >>>> with: >>>> >>>> mkdir ../ITK-build >>>> cd ../ITK-build >>>> cmake ../ITK >>>> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit >>>> >>>> Visual Studio builds must also add ?-C Release? to the ctest command. >>>> >>>> Notify the mailing list if there are any unexpected failures. Testing >>>> your own applications against the RC is also appreciated. >>>> >>>> >>>> Congratulations to the 31 contributors to this release. We would >>>> especially like to recognize the new contributors: Hastings Greer, >>>> Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, >>>> Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss >>>> Jallais. >>>> >>>> >>>> The 4.11.0 final release is scheduled for January 23rd. >>>> >>>> >>>> [1] http://www.itk.org/Wiki/ITK/Git >>>> >>>> [2] http://open.cdash.org/index.php?project=Insight >>>> >>>> >>>> New Features >>>> ------------ >>>> >>>> * Wrapping Improvements >>>> - Python GetArrayFromImage() and GetImageFromArray() from >>>> ITKBridgeNumPy are directly accessible from the Python itk namespace. >>>> - The itk package loads much faster: individual modules are loaded >>>> only when required. >>>> - Conversion of ITK images from and to NumPy array using Bridge >>>> NumPy supports RGB, RGBA, and Vector images. >>>> - VNL vectors and VNL matrices can be converted from and to NumPy >>>> objects with respectively the new couple of functions >>>> GetArrayFromVnlVector()/GetVnlVectorFromArray() and >>>> GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() >>>> - The global timestamp is used across all ITK Python modules when >>>> built statically >>>> - Wrap additional classes such as KernelFunctionBase >>>> - itk_python_add_test CMake function added for Python script testing >>>> in ITK modules >>>> >>>> * New Remote Modules >>>> - DVMeshNoise >>>> - Perturbing mesh vertices with additive gaussian noise >>>> - http://hdl.handle.net/10380/3567 >>>> - PerformanceBenchmarking >>>> - Accurate benchmarking of computational performance >>>> - http://hdl.handle.net/10380/3557 >>>> - PrincipalComponentsAnalysis >>>> - Principal components analysis of scalar, vector, and mesh vertex >>>> data >>>> - http://hdl.handle.net/10380/3386 >>>> - RLEImage >>>> - Run-length encoded memory compression scheme for itk::Image >>>> - http://hdl.handle.net/10380/3562 >>>> - MorphologicalContourInterpolation >>>> - N-D morphological contour interpolation >>>> - http://hdl.handle.net/10380/3563 >>>> - GenericLabelInterpolator >>>> - A generic interpolator for multi-label images >>>> - http://hdl.handle.net/10380/3506 >>>> - MultipleImageIterator >>>> - Iterate over multiple images simultaneously >>>> - http://hdl.handle.net/10380/3455 >>>> - FixedPointInverseDisplacementField >>>> - Computes inverse displacement field >>>> - http://hdl.handle.net/10380/3222 >>>> >>>> * Core Improvements >>>> - New ITK_TEMPLATE_EXPORT for templated classes resolves >>>> cross-binary dynamic_cast on Mac OSX >>>> - New MersenneTwisterRandomVariateGenerator instances are >>>> initialized with different seeds >>>> - Use compiler feature detection in CMake for C++11 features, etc. >>>> - New CMake macro itk_module_add_library for creating libraries in >>>> ITK modules >>>> - Improved support for ccache and distcc with >>>> CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) >>>> - Support for .sha512 ExternalData content links >>>> - GitHub Pages and data.kitware.com ExternalData repositories added >>>> - GPGPU system support for C++11 >>>> - Support of new compilers: Visual Studio 15 and XCode 8.2.1 >>>> (clang-800.0.42.1) >>>> >>>> * Filtering Improvements >>>> - HessianToObjectnessMeasure moved out of the ITKReview module >>>> - New UnsharpMaskImageFilter for image edge enhancement >>>> >>>> * IO Improvements >>>> - TransformFactory class has been moved to a separate module >>>> - Spline order added to BSplineTransform identifier >>>> - Improved NIFTI orientation support >>>> >>>> * Documentation Improvements >>>> - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples >>>> >>>> * Third Party Library Updates >>>> - pygccxml updated to v1.8.0 >>>> - VNL updated to latest upstream (2016.07.06) >>>> - SWIG updated to v3.0.11 >>>> - KWSys updated to latest upstream (2016.11.21) >>>> - HDF5 updated to v1.8.17 >>>> - SCIFIO updated to latest upstream (2016.12.01) >>>> - DCMTK updated to 3.6.1_20121012 >>>> - CastXML to latest upstream (2016.01.28) >>>> >>>> * Improved Code Coverage -- we are at 85.44%! >>>> - Jon Haitz-Legarreta's extensive code coverage improvements >>>> - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ >>>> >>>> * *Lots* of important bug fixes >>>> >>>> * And much more! See details in the log below. >>>> >>>> >>>> Changes from v4.11rc01 to v4.11rc02 >>>> ----------------------------------- >>>> >>>> Bradley Lowekamp (5): >>>> BUG: Remove unused SimpleImageRegistrationTest baselines >>>> ENH: Expose GetNextSeed method in MersenneTwiseter Generator >>>> BUG: Add option for fixed seed or wall clock seed for sampling >>>> BUG: Use metric random seed in v3 examples >>>> BUG: Prefer setting seed at algorithm in "v4" tests. >>>> >>>> Francois Budin (3): >>>> ENH: Update BridgeNumPy to latest version on 2017.01.08 to address >>>> ITK-3511 >>>> BUG: Extra \$ in doxygen comment >>>> BUG: Binary include directory added only if enabled shared >>>> >>>> Jon Haitz Legarreta (2): >>>> DOC: Document itkLabelOverlapMeasuresImageFilter methods. >>>> DOC: Fix ITKImageNoise filters' doc TeX errors. >>>> >>>> Matthew McCormick (1): >>>> BUG: Remove invalid ImageRegistration4Test.png.sha512 >>>> >>>> Max Smolens (1): >>>> DOC: Fix itkUnsharpMaskImageFilter documentation typos >>>> >>>> Simon Rit (1): >>>> BUG: ITK-based software was crasing when thread creation failed >>>> >>>> >>>> Changes from v4.10.0 to v4.11rc01 >>>> --------------------------------- >>>> >>>> Bill Lorensen (4): >>>> COMP: Restore support for clang 3.0 compiler >>>> COMP: Consistent use of ModifiedTimeType >>>> ENH: Bump WikiExamples remote module version >>>> ENH: Bump WikiExamples version >>>> >>>> Bradley Lowekamp (57): >>>> ENH: Add registered TrasformIO's to exception >>>> ENH: Use template or constant for loop stop condition >>>> ENH: Updating SWIG version to 3.0.9 >>>> COMP: Address VS9 ambiguous std::abs call in Haung calculator >>>> COMP: Fix undefined NumericTraits::Zero and One errors with mingw64 >>>> BUG: Fix segfault if ~CleanUpObjectFactory called multiple times >>>> BUG: Address itkHDF5ImageIO test failures for mingw64 >>>> BUG: demonstrate dynamic_cast failure when reading transforms >>>> BUG: Address itkHDF5ImageIO test failures for mingw64 >>>> ENH: Updating SWIG version to 3.0.10 >>>> ENH: Enable CMP0063 New behavior >>>> COMP: Enable hidden visibility property with vxl static libraries >>>> COMP: Enable hidden visibility property with HDF5 static libraries >>>> COMP: Enable hidden visibility property with HDF5 static libraries >>>> BUG: Match Add2 function to AddImageFilter documentation >>>> ENH: Improve support for std::complex with PowImageFilter >>>> ENH: Explicitly mark required files for dependent tests >>>> COMP: Bypass XCode 7.3,8 internal compilation error >>>> COMP: Address CMake configuration error with itkJPEG2000Test03 >>>> property >>>> BUG: Correct test's REQUIRED_FILES to only the input. >>>> ENH: move HessianToObjectnessMeasure filter out of Review >>>> ENH: Separate TransformFactory class into separate module >>>> DOC: Add links between similar label to rgb filters >>>> ENH: Separate data from function calls >>>> COMP: Fix changed Graft method >>>> ENH: Reduce template dependencies on CalculateRotationMatrix >>>> ENH: Add Functor Accessors to LabelMapToRGB filter >>>> BUG: Enable VirtualDomain and FixedTransform in RegMethv4 >>>> BUG: Use BSpline Order 3 for 2D in transform factory. >>>> ENH: Add spline order to BSplineTransform's string id >>>> ENH: Adding initial CircleCi configuration file >>>> COMP: Fix float to unsigned integer conversion warnings >>>> BUG: Include installed modules in ITK_MODULES_ENABLED >>>> COMP: Address CMake error that ITKGPUCommon is not in export >>>> COMP: Address wrong library types with VS and shared libraries >>>> BUG: Ensure CreateImageIO is concurrent thread safe >>>> ENH: Mark HDF5 CMake options as internal >>>> COMP: Add template export declaration for ParametricPath >>>> COMP: Correct TEMPLATE_EXPLICIT definition in Path module >>>> ENH: Factor out common code in the TrasformFactoryBase registration >>>> ENH: Add CMake variable for max transform dimension, defaults 4 >>>> ENH: Create CMake module to check for private RTTI compatibility >>>> ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT >>>> COMP: Correct ifndef value to allow user defined >>>> ITK_TEMPLATE_EXPORT >>>> BUG: Add explicit instantiate for ObjectToObjectOptimizerBase >>>> COMP: Use add_definitions for CMake 2.8.9 compatibility >>>> COMP: Add warning suppression for distcc warning >>>> ENH: Explicitly instantiate the optimizer base over float >>>> BUG: Use IsLinear to check if transform is "affine" >>>> ENH: Remove unneeded includes of random iterator header >>>> ENH: Improve thread-safety for Generator, and unique New sequence >>>> ENH: Do not use global random generator >>>> BUG: Update v3 registration metrics to use local seed >>>> ENH: Prefer setting local seed over global in tests. >>>> ENH: Update SWIG to latest 3.0.11 release >>>> BUG: relax testing parameters for v3 translation registration >>>> BUG: Restore baseline for debug registration >>>> >>>> Caspar Goch (2): >>>> BUG: Use printable type for RGBA pixel ostream for ITK-3501 >>>> STYLE: Remove extra space for ITK-3501 >>>> >>>> Christina Rossmanith (1): >>>> DOC: Added more details to the class Doxygen documentation. >>>> >>>> Davis Vigneault (2): >>>> COMP: VCL_DEFINE_SPECIALIZATION not defined >>>> ENH: Add remote module DVMeshNoise >>>> >>>> D?enan Zuki? (27): >>>> BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) >>>> ENH: Adding MultipleImageIterator as a remote module >>>> COMP: enables TBB 4.4 back-end for VTK7's SMP >>>> COMP: enabling position independent code flag for FFTW >>>> ENH: adding configuration file for code reformatting tool >>>> clang-format >>>> ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 >>>> COMP: Fixing -fPIC flag passing with Ninja build system >>>> ENH: Adding RLEImage as a remote module >>>> ENH: Updating uncrustify configuration to current git version >>>> STYLE: better compliance with ITK style >>>> STYLE: A new option in uncrustify, updating the config file >>>> accordingly >>>> ENH: Adding MorphologicalContourInterpolation as a remote module >>>> ENH: improving documentation >>>> BUG: fixing buffer growing endlessly, as reported by Timothee Evain >>>> BUG: fixing buffer growing endlessly, as reported by Timothee Evain >>>> STYLE: default uncrustify configuration file is less aggressive >>>> COMP: Fixing warning >>>> COMP: VS15 compiler fix >>>> BUG: casting -9 to unsigned produced unwanted result >>>> BUG: Ensuring consistency between debug and release >>>> COMP: Updating LesionSizingToolkit after some recent compile fixes >>>> COMP: respect option METAIO_USE_NAMESPACE >>>> ENH: updating version of AnisotropicDiffusionLBR >>>> ENH: adding UnsharpMaskingImageFilter >>>> COMP: explicitly cast to output type >>>> BUG: double call to update would cause empty output image >>>> ENH: Updating RLEImage remote module. Change-log: >>>> >>>> Eugene Prilepin (4): >>>> ENH: Add the "ITK_USE_GPU" to ITK Config >>>> BUG: Fix API for set/get "LaplacianImageFilter" object >>>> ENH: Add support of images types with the 'CovariantVector' pixel >>>> type >>>> ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap >>>> >>>> Francois Budin (52): >>>> ENH: Adding GetArrayFromImage in python itk namespace >>>> ENH: Adding GetImageFromArray in python itk namespace >>>> ENH: *_WRAP_* variable per external module >>>> BUG: ImportImageFilter not responsible of memory management >>>> ENH: New remote module GenericLabelInterpolator >>>> DOC: SetNumberOfOutputs had wrong comment >>>> BUG: lazyAttributes dictionary keys could be over-ridden >>>> BUG: lazyAttributes dictionary keys could be over-ridden >>>> BUG: Fix recent update of HDF5 (1.8.17) >>>> ENH: Update SCIFIO to latest version on 08/23/2016 >>>> ENH: Addition of the remote module FixedPointInverseDisplacementF >>>> ield >>>> ENH: Update SCIFIO to latest version on 08/29/2016 >>>> BUG: Path to commit was relative instead of absolute >>>> ENH: Path to SetupForDevelopment is relative, not absolute >>>> BUG: LSMImageIO write function was not checking image dimension >>>> BUG: LSMImageIO was not checking correctly image dimension >>>> BUG: Missing associated test data >>>> BUG: Missing associated test data >>>> ENH: Bump CMakeLists.txt version to 4.10.1. >>>> BUG: Quotes are not escaped in configured cmake file >>>> ENH: Improving API of Graft() in itk::Image >>>> ENH: Updating ITKGenericLabelInterpolator remote module >>>> ENH: Update ITKIOTransformDCMTK remote module >>>> BUG: Factory registration should depend on ITK_BUILD_SHARED >>>> COMP: Updating DCMTK compilation for Ninja >>>> ENH: Update version of DCMTK to 3.6.1_20121012 >>>> ENH: Update SCIFIO to latest version on 10/25/2016 >>>> BUG: Swig and PCRE do not support space in installation paths >>>> BUG: exit() call from within piped commands was not exiting the >>>> script >>>> BUG: Typo in folder creation command >>>> ENH: Only display message for transform registered multiple times >>>> in debug >>>> ENH: Image spacing must be positive >>>> BUG: Supported extensions by PNG IO were not added in constructor. >>>> DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. >>>> ENH: Update SCIFIO to lastest (2016.12.01) >>>> ENH: FixedPointInverseDisplacementField moved to >>>> InsightSoftwareConsortium >>>> COMP: Remove compilation warnings >>>> ENH: Improved support of ccache and distcc >>>> BUG: GPUImage regression due to API change. >>>> ENH: Update Bridge Numpy (2016.12.05) >>>> ENH: Update VariationalRegistration to remove warnings during >>>> compilation >>>> ENH: FindPythonLibs does not support both debug and release >>>> python libraries >>>> ENH: Update VariationalRegistration >>>> BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of >>>> itk::ImageBase >>>> BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper >>>> BUG: Missing ITK_TEMPLATE_EXPORT in templated class >>>> BUG: Remove linkage warnings on MacOS >>>> BUG: HDF5 CMake installation directory variable had not been >>>> updated >>>> BUG: Missing include header in AnisotropicDiffusionBLR remote >>>> module hxx files >>>> COMP: Silencing unused variable warning in itkTimeStamp >>>> STYLE: Improve style checking by using module >>>> ITKKWStyleOverwrite.txt >>>> COMP: OS*Barrier functions are deprecated on MacOS 10.12 >>>> >>>> GCC-XML Upstream (1): >>>> ENH: pygccxml v1.8.0 (reduced) >>>> >>>> Gert Wollny (1): >>>> BUG: Relax vnl_complex floating point comparisons for i386 >>>> >>>> Gilles Filippini (1): >>>> BUG: Use NATIVE_HBOOL for encoding HDF5 types. >>>> >>>> HDF Group (1): >>>> ENH: hdf5 1.8.17-r30218 (reduced) >>>> >>>> Hans Johnson (23): >>>> COMP: Use cmake WriteCompilerDetectionHeader >>>> ENH: Use itk_compiler_detection versions >>>> COMP: Need ITK_NOEXCEPT_OR_THROW macro. >>>> COMP: Provide consistent granular C++11 support >>>> STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT >>>> STYLE: Prefer to use consistent definitions >>>> COMP: Improve robustness of identifying the compiler standard used >>>> BUG: try_compile for AlignAs were always failing >>>> STYLE: Provide a well documented macro for repeated code >>>> STYLE: Delete functions in consistent way >>>> COMP: GPU baseclass ivars need to be protected >>>> COMP: Remove unnecessary circular dependancy >>>> COMP: Add long long usage for HDF5 >>>> COMP: Add long long usage for HDF5 >>>> STYLE: Prefer static small array to dynamic array >>>> BUG: Confusing interface for FFTW wisdom files >>>> STYLE: Output dimension from OutputImageType >>>> STYLE: Code review style cleanups >>>> STYLE: Prefer to use ITK AssertOrThrow macros >>>> ENH: Add OverrideBoundaryCondition logic >>>> ENH: Provide mechanism for enhanced NIFTI support >>>> BUG: Use NIFTI sform/qform conventions correctly >>>> ENH: Remove ambiguity about sform/qform >>>> >>>> Hastings Greer (8): >>>> BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically >>>> BUG: make itkTriangleHelper instantiable to ease wrapping >>>> BUG: remove lsqr because of license issues ITK 1160 >>>> BUG: make itkTriangleHelper instantiable to ease wrapping >>>> BUG: initialize X to zero in lsmr Solve >>>> BUG: Labled Point Set Registration: test multiple labels >>>> BUG: Fix python wrapping of Cuberille remote module >>>> BUG: Add test demonstrating Python global timestamp issue >>>> >>>> Jean-Christophe Fillion-Robin (5): >>>> STYLE: UseITK: Set ImageIO exceptions using new convention. See >>>> #3393 >>>> STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 >>>> STYLE: Update MeshIO factories to use RegisterFactoryInternal. See >>>> #3393 >>>> STYLE: MeshIO: Move MeshFileWriterException into its own file. See >>>> #3393 >>>> STYLE: MeshIO: Remove unused include from headers. See #3393 >>>> >>>> Johan Andruejol (3): >>>> ENH: Add missing itkKernelFunctionBase wrapping >>>> ENH: Add PrincipalComponentsAnalysis remote module >>>> COMP: Override cannot be used with inline >>>> >>>> Jon Haitz Legarreta (216): >>>> ENH: Improve itkFlatStructutingElement coverage. >>>> ENH: Improve itkPathToImageFilter class coverage. >>>> ENH: Improve itkIsolatedWatershedImageFilter coverage. >>>> ENH: Improve itkLogSigmoidTransferFunction coverage. >>>> STYLE: Improve itkBSplineTransform doc style. >>>> ENH: Improve GaborKernelFunctionCoverage. >>>> PERF: Remove duplicate itkMath include >>>> STYLE: Move the PrintSelf method to the end >>>> STYLE: Improve the itkScalarToRGBColormapImageFilter style. >>>> STYLE: Delete duplicate method documentation >>>> STYLE: Remove method documentation from implementation file >>>> STYLE: Improve GACLevelSet classes' style >>>> STYLE: Improve test style >>>> ENH: Improve itkGaussianDerivativeImageFilter coverage. >>>> ENH: Improve the itkScalarToRGBColormapImageFilter coverage >>>> STYLE: Improve itkScalarToRGBColormap test style >>>> ENH: Improve GACLSImageFilter classes' coverage >>>> STYLE: Improve comment style in GACLS tests >>>> ENH: Improve itkImportImageFilter coverage >>>> ENH: Improve itkVideoFileReader coverage >>>> ENH: Improve itkVideoFileWriter coverage >>>> STYLE: Improve the itkVideoFileWriter style. >>>> STYLE: Imrpove itkVideoFileReader style. >>>> ENH: Improve the itkBSplineControlPointImageFunction coverage >>>> STYLE: Improve the itkIntensityWindowingImageFilter style >>>> STYLE: Improve the itkIntensityWindowingImageFilter test style >>>> ENH: Improve ImageToSpatialObjectRegistrationMethod coverage >>>> STYLE: Improve test style >>>> ENH: Improve MaskNeighborhoodOperatorImageFilter coverage >>>> ENH: Improve itkMeshFileWriter coverage >>>> ENH: Improve RescaleIntensityImageFilter coverage. >>>> ENH: Improve itkClampImageFilter coverage. >>>> BUG: Fix ivar type casting in PrintSelf. >>>> STYLE: Improve MRIBiasFieldCorrectionFilter style. >>>> ENH: Improve MRIBiasFieldCorrectionFilter coverage. >>>> ENH: Improve itkIntensityWindowingImageFilter coverage >>>> BUG: Fix Run-time type information in CSV module classes. >>>> ENH: Improve the itkHistogram class code coverage. >>>> DOC: Fix documentation typo. >>>> STYLE: Improve the ImproveRescaleIntensityImageFilter style. >>>> PERF: Make the itkVideoFileReader ivars private >>>> PERF: Make itkVideoFileWriter ivars private >>>> ENH: Improve coverage for itk::OrientImageFilter. >>>> STYLE: Improve itk::OrientImageFilter class style. >>>> ENH: Improve itkCSVNumericObjectFileWriter coverage. >>>> ENH: Add missing standard class typdefs. >>>> ENH: Improve itkVoronoiSegmentationImageFilter coverage. >>>> ENH: Improve itkVoronoiSegmentationImageFilter style. >>>> STYLE: Improve the MalahanobisDistanceThresholdImageFunction >>>> style. >>>> ENH: Improve coverage for itkMalahanobisDistanceThreshold. >>>> ENH: Improve itk::MinimumMaximumImageCalculator coverage. >>>> ENH: Improve itkMinimumMaximumImageCalculator style. >>>> BUG: Fix type mismatch in test. >>>> STYLE: Improve itkPolylineMaskImagefilter style. >>>> ENH: Improve itkPolylineMaskImageFilter coverage. >>>> ENH: Improve itkFileListVideoStyle. >>>> ENH: Improve itkLandmarkBasedTransformInitializer coverage. >>>> ENH: Add baseline image to itkPolylineMaskImageFilter test. >>>> ENH: Improve coverage for itkBSplineTransformInitializer. >>>> STYLE: Improve itkBSplineTransformInitializer doc style. >>>> ENH: Enhance itkBSplineTransformInitializer implementation. >>>> DOC: Fix typo in method documentation. >>>> ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. >>>> STYLE: Improve the itkSimpleContourExtractorImageFilter style. >>>> ENH: Exercise the class' Get methods. >>>> ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. >>>> ENH: Improve style for itkThresholdLabelerImageFilter. >>>> ENH: Improve itkThresholdLabelerImageFilter coverage. >>>> ENH: Get internal ImageIO via a const macro. >>>> ENH: Improve the itkSimpleContourExtractorImageFilter coverage. >>>> STYLE: Improve the itkMetaArray class style. >>>> ENH: Improve MetaArrayReader/Writer coverages. >>>> ENH: Improve the itkCovarianceImageFunction style. >>>> STYLE: Improve itkVoronoiDiagram2DGenerator style. >>>> ENH: Improve VoronoiDiagram2DGenerator coverage. >>>> STYLE: Improve the itkBayesianClassifierImageFilter style. >>>> STYLE: Improve the itkMetaArrayWriter style. >>>> ENH: Improve itkCovarianteImageFunction coverage. >>>> COMP: Fix signed/unsigned int comparison warning. >>>> DOC: Improve itkGrayscaleDilateImageFilter documentation. >>>> DOC: Improve documentation for itkGrayscaleErodeImageFilter. >>>> DOC: Improve ConfigureHistogram method documentation. >>>> STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. >>>> BUG: Fix Superclass name in RTTI. >>>> STYLE: Improve itkGaussianInterpolateImageFunction style. >>>> ENH: Improve coverage for itkGaussianInterpolateImageFunction. >>>> ENH: Improve itkBayesianClassifierImageFilter coverage. >>>> ENH: Add itkBSplineControlPointImageFilter RTTI. >>>> STYLE: Improve itkBSplinecontrolPointImageFilter style. >>>> ENH: Improve itkBSplineControlPointImageFilter coverage. >>>> ENH: Improve coverage for itkRegularStepGradientDescentO >>>> ptimizerv4. >>>> STYLE: Improve the class implementation file style. >>>> STYLE: Improve the itkResampleImageFilter style. >>>> DOC: Fix typo in GetMTime method doc. >>>> STYLE: Remove out-of-body implementation doc >>>> ENH: Improve itkResampleImageFilter coverage. >>>> ENH: Improve itkAbsImageAdaptor and Filter coverage. >>>> BUG: Fix itkLSMImageIO class' Superclass name. >>>> ENH: Improve the itkInterpolateImagePointsFilter coverage. >>>> ENH: Improve itkPowImageFilter coverage. >>>> BUG: Fix ConvolutionImageFilter RTTI. >>>> STYLE: Use initialization lists. >>>> STYLE: Improve BinaryFunctorImageFilter style. >>>> ENH: Improve itkMinimumImageFilter code coverage. >>>> BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. >>>> ENH: Improve MaximumImageFilter coverage. >>>> BUG: Fix conversion to PixelType conversion. >>>> COMP: Fix double to unsigned char conversion warning. >>>> ENH: Improve coverage for itkNormalizeToConstantImageFilter. >>>> BUG: Fix itkSquaredDifferenceErrorFunction RTTI. >>>> ENH: Improve itkMeanImageFunctionCoverage. >>>> ENH: Improve itkSquareImageFilter coverage. >>>> STYLE: Improve the itkSquaredDifferenceErrorFunction style. >>>> STYLE: Enhance style for itkNormalizeToConstantImageFilter. >>>> STYLE: Improve itkMeanImageFunction style. >>>> ENH: Remove unnecesary call to filter print. >>>> ENH: Improve itkRegionOfInterestImageFilter coverage. >>>> STYLE: Improve itkRegionOfInterestImageFilter style. >>>> STYLE: Improve itkPasteImageFilter style. >>>> STYLE: Improve itkJoinSeriesImageFilter style. >>>> BUG: Fix itkPadLabelMapFilter RTTI Superclass. >>>> COMP: Address std::cout.precision conversion warning. >>>> ENH: Improve itkBayesianClassifiertImageFilter coverage. >>>> ENH: Improve itkPadLabelMapFilter coverage. >>>> ENH: Improve itkJoinSeriesImageFilter coverage. >>>> ENH: Improve the itkPasteImageFilter coverage. >>>> ENH: Improve MeanImageFilter coverage. >>>> COMP: Address std::cout.precision conversion warning. >>>> ENH: Improve TernaryMagnitudeImageFilter coverage. >>>> ENH: Improve FFTConvolutionImageFilter coverage. >>>> DOC: Fix class documentation in ternary magnitude filters. >>>> ENH: Improve ConstrainedValueDifferenceImageFilter coverage. >>>> ENH: Improve AndImageFilter coverage. >>>> ENH: Add baseline test to itkTernaryMagnitudeImageFilter. >>>> ENH: Use MD5 comparison framework in baseline test. >>>> ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. >>>> STYLE: Improve the itkVectorRescaleIntensityImageFilter style. >>>> ENH: Print missing ivar in filter PrintSelf method. >>>> ENH: Improve itkComplexToImaginaryFilter coverage. >>>> ENH: Improve itkComplexToPhaseImageFilter coverage. >>>> ENH: Improve itkComplexToModulusImageFilter coverage. >>>> ENH: Improve itkComplexToRealImageFilter coverage. >>>> ENH: Improve itkVectorResampleImageFilter coverage. >>>> ENH: Add GetTransform method. >>>> ENH: Improve itkConstrainedValueAdditionImageFilter coverage. >>>> ENH: Improve itkModulusImageFilter coverage. >>>> ENH: Improve itkLog10ImageFilter coverage. >>>> ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. >>>> ENH: Improve itkLogImageFilter coverage. >>>> ENH: Improve itkInvertIntensityImageFilter coverage. >>>> STYLE: Improve itkInvertIntensityImageFilter style. >>>> DOC: Add missing doc to itkInvertIntensityImageFilter. >>>> STYLE: Improve itkIntensityWindowingImageFilter style. >>>> STYLE: Use initialization lists. >>>> ENH: Improve itkIntensityWindowingImageFilter coverage. >>>> ENH: Improve itkNaryMaximumImageFilter coverage. >>>> COMP: Fix std::precision type casting warning. >>>> ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. >>>> STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod >>>> style. >>>> ENH: Remove SmartPointers being explicitly initialized to null. >>>> STYLE: Improve the itkPointSetToImageRegistrationMethod style. >>>> ENH: Improve itkPointSetToImageRegistration coverage. >>>> STYLE: Change the name of the itkPointSetToImageRegistrationMethod >>>> test. >>>> STYLE: Improve itkVectorResampleImageFilter style. >>>> STYLE: Improve the itkAntiAliasBinaryImageFilter style. >>>> ENH: Improve trigonometric function filters' coverage. >>>> STYLE: Remove test names from std::out messages. >>>> ENH: Improve Boolean Algebra ImageFilters coverage. >>>> STYLE: Improve the EuclideanDistancePointMetric style. >>>> ENH: Improve itkSigmoidImageFilter coverage. >>>> STYLE: Improve itkCropImageFilter style. >>>> ENH: Improve itkCropImageFilter coverage. >>>> ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. >>>> ENH: Improve itkRescaleIntensityImageFilter coverage. >>>> ENH: Improve the itkMatrixSelectionImageFilter coverage. >>>> ENH: Improve itkTanImageFilter and Adaptor coverage. >>>> ENH: Increase itkSqrtImageFilter and Adaptor coverage. >>>> ENH: Increase itkTernaryOperatorImageFilter coverage. >>>> ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. >>>> STYLE: Improve itkScalarImagekmeansImageFilter style. >>>> STYLE: Conform to TEST_SET_GET_VALUE definition. >>>> BUG: Fix uninitialized variable due to dynamic analysis defect. >>>> BUG: Fix uninitialized variable defect reported by valgrind. >>>> ENH: Improve the itkPointSetToPointSetRegistrationTest. >>>> ENH: Improve the itkPointSetToImageRegistrationTest. >>>> ENH: Increas BinaryMagnitudeImageFilter coverage. >>>> STYLE: Remove test name from std output. >>>> ENH: Increase MagnitudeImageFilter coverage. >>>> BUG: Fix uninitialized variable defect reported by valgrind. >>>> BUG: Fix Superclass name in RTTI. >>>> STYLE: Improve itkFrustumSpatialFunction style. >>>> STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction >>>> style. >>>> BUG: Fix Superclass template argument list. >>>> STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. >>>> STYLE: Improve the itkCheckerBoardImageFilter class style. >>>> ENH: Improve the itk::LabelVotingImageFilter coverage. >>>> ENH: Improve itkCheckerBoardImageFilter coverage. >>>> STYLE: Improve itk::LabelVotingImageFilter style. >>>> STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. >>>> ENH: Add test for itk::FrustumSpatialFunction class. >>>> ENH: Improve itkConnectedThresholdImageFilter coverage. >>>> STYLE: Improve itkConnectedThresholdImageFilter style. >>>> BUG: Fix FrustumSpatialFunction internal precision conversion. >>>> COMP: Fix implicit conversion warning. >>>> STYLE: Improve itkThresholdImageFilter style. >>>> ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. >>>> BUG: Fix Superclass template argument list. >>>> ENH: Improve itkUnsharpMaskingImageFilter implementation. >>>> ENH: Improve the itkUnsharpMaskingImageFilter coverage. >>>> ENH: Fix UnsharpMaskingImageFilter test inconsistencies. >>>> BUG: Add missing itkTypeMacro. >>>> DOC: Document the member variables. >>>> BUG: Fix the itkImageSource RTTI class name, >>>> STYLE: Improve itkLabelImageGaussianInterpolateImageFunction >>>> style. >>>> ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. >>>> STYLE: Improve itkLabelOverlapMeasurementImageFilter style. >>>> >>>> KWSys Robot (6): >>>> KWSys 2016-06-30 (96f06c8e) >>>> KWSys 2016-10-23 (b630d2f5) >>>> KWSys 2016-11-03 (37306a1c) >>>> KWSys 2016-11-08 (2b3e2b1c) >>>> KWSys 2016-11-09 (18c65411) >>>> KWSys 2016-11-21 (cb55cf5a) >>>> >>>> Maeliss Jallais (1): >>>> BUG: Add unsigned and signed short to the wrapping of vnl_matrix >>>> >>>> Matthew McCormick (85): >>>> PERF: Simplify HilbertPath numberOfPathVertices computation. >>>> BUG: CID 1355469 NNetClassifierTest4 unintended integer division. >>>> BUG: Update Cuberille Remote for version check fix. >>>> ENH: Bump ITK version to 4.11.0. >>>> BUG: Fix HDF5ImageIO type information. >>>> BUG: Fix H5File memory leak in HDF5ImageIO. >>>> DOC: Collect Francois Budin's contributions in .mailmap >>>> BUG: Limit WRAP_ITK_MODULES when building externally >>>> STYLE: Improvements to ResourceProbe report output. >>>> ENH: Add a useTabs argument to ResourceProbe::Report. >>>> ENH: Add standard error measure to the ResourceProbe >>>> ENH: Add itk_python_add_test function. >>>> BUG: Remove VNL file from subtree merge. >>>> COMP: Fix wrapping with a space in the Python include path >>>> BUG: Fix PermuteAxesImageFilter pipeline method visibility >>>> BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter >>>> BUG: ResampleImageFilter honor isInside output of the transform >>>> method >>>> COMP: Avoid recursive include of itkMath.h >>>> COMP: Fix VXL header installation locations >>>> BUG: ClampImageFilterTest for older GCC, InPlaceOn >>>> DOC: Add CONTRIBUTING.md file to the top level. >>>> COMP: Update VariationalRegistration to address Doxygen warnings >>>> BUG: Compiler detections file installed into ITK build tree >>>> location >>>> COMP: Do not use string(TIMESTAMP. >>>> COMP: Remove HDF5 -std=c99 for C++ files >>>> BUG: Do not build HDF5 static library with a shared build >>>> ENH: Add PerformanceBenchmarking Remote Module >>>> COMP: Remove duplicate wrappings for ResampleImageFilter >>>> BUG: Put Python test output files in the build tree >>>> BUG: Improve HDF5ImageIO::CloseDataSet name >>>> COMP: Use add_python_test PythonLazyLoadingImage >>>> COMP: Address missing override it itkFactoryTestLib.cxx >>>> BUG: Index,Size,Offset constructors present in Python with C++11 >>>> COMP: Address missing override it itkFactoryTestLib.cxx >>>> BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT >>>> ENH: Bump SetupForDevelopment version >>>> BUG: Add missing ZLib deflate support to HDF5 >>>> BUG: Address memory leak, remove NumPy build dep in BridgeNumPy >>>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >>>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >>>> BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include >>>> ITK_WRAP_IMAGE_DIMS >>>> BUG: RichardsonLucyDeconvolutionImageFilter with non-null input >>>> Image Origin >>>> BUG: Fix inconsistent Twister start with Initialize(seed) and >>>> SetSeed(seed) >>>> BUG: Do not hard code CMake scripts in HDF5 >>>> COMP: Workaround Emscripten ITKCommon test build failure >>>> COMP: Do embed fancy HDF5 libsettings with Emscripten >>>> COMP: Add missing H5T_patch_vlen_file declaration >>>> ENH: Bump CastXML to 2016-10-11 master. >>>> COMP: Workaround Emscripten ITKCommon test build failure >>>> BUG: Swap CastXML hashes for Mac OSX and Windows >>>> ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 >>>> COMP: Fix VNL tests when cross-compiling >>>> ENH: ExternalData multi-algorithm support >>>> ENH: ExternalData support for data.kitware.com >>>> BUG: Install missing H5pubconf.h >>>> BUG: Use SpacePrecisionType in TileImageFilter >>>> BUG: Use internal ExternalData_Add_Target >>>> ENH: Run .sha512, .md5 simultaneous modification pre-commit check >>>> BUG: Correct CastXML Windows binary >>>> BUG: Support non-zero Index in LevelSetNeighborhoodExtractor >>>> ENH: Add ArchiveTestingDataOnGirder.py >>>> BUG: Correct AtanRegularizationHeavisideStepFunction derivative >>>> ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh >>>> BUG: Remove extra HessianToObjectness content links >>>> ENH: Wrap SpatialFunction float types with ITK_WRAP_float >>>> BUG: Bump PerformanceBenchmarking to 2016-11-04 >>>> BUG: itk_python_expression_add_test too many quotes. >>>> ENH: Wrap VectorImage with complex real pixel types >>>> ENH: Bump PerformanceBenchmarking to 2016-11-07 >>>> BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter >>>> ENH: Create itk_module_add_library macro >>>> BUG: Update computeCodeCoverageLocally.sh for KWStyle addition >>>> COMP: Install a newer version of CMake on CircleCI >>>> ENH: Use GitHub Pages as the first ExternalData resource >>>> ENH: Add tests to demonstrate OSX dynamic_cast failure >>>> BUG: Use random seed with for MersenneTwisterRandomVariateGe >>>> nerator. >>>> BUG: Enable program global timestamp >>>> BUG: Set random number seed in Mattes metric test >>>> BUG: Notify builder that ITK_DYNAMIC_LOADING is required with >>>> wrapping >>>> BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON >>>> BUG: Set random number seed mutual information metric tests >>>> BUG: Wrap std::vector< itk.Point > >>>> BUG: Fix wrapping of LandmarkBasedTransformInitializer >>>> BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter >>>> DOC: Add D?enan Zuki? to .mailmap >>>> >>>> Max Smolens (4): >>>> COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar >>>> field >>>> BUG: CID-1355438 QuadEdgeTest1 resource leaks >>>> COMP: CID-1355472 MIRegistrationFunction unused value >>>> COMP: Fix link errors for VNL template instantiations on Windows >>>> >>>> Mayeul Chassagnard (7): >>>> BUG: Test added and error fixed in HDF5ImageIO >>>> ENH: Update add_library TO itk_module_add_library >>>> COMP: Set Policy CMP0023 target_link_libraries for >>>> Modules/ThirdParty/VNLI... >>>> BUG: Add ITK_TEMPLATE_EXPORT to template classes >>>> BUG: Fix errors linked to dyn_cast merge >>>> BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for >>>> classes >>>> BUG: dash3win7 dashboard build error unresolved external symbol >>>> >>>> Michka Popoff (3): >>>> ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 >>>> ENH: Update igenerator.py for pygccxml v1.8.0 >>>> COMP: Use pygccxml's public API for apply definitions >>>> >>>> Pierre Barbier de Reuille (2): >>>> COMP: Fix function naming error when using FFTWD >>>> COMP: Fix function naming error when using FFTWD >>>> >>>> Sean McBride (1): >>>> COMP: Bypass HDF5 bugs under TSan >>>> >>>> Simon Rit (2): >>>> COMP: remove C++11 compiler warning for CUDA compilations >>>> COMP: remove C++11 compiler warning for CUDA compilations >>>> >>>> Somesh Kashyap (2): >>>> BUG: Override TransformCategoryType for >>>> AzimuthElevationToCartesianTransform >>>> BUG: -Added test case for itkAzimuthElevationToCartesianTransform >>>> >>>> Sumedha Singla (1): >>>> ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote >>>> module >>>> >>>> Taylor Braun-Jones (4): >>>> COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is >>>> enabled >>>> COMP: Fix truncation from double to float warning >>>> DOC: Fix incorrect itkFactorylessNewMacro documentation >>>> COMP: Only include the headers for required OpenCV modules >>>> >>>> Thien Nguyen (1): >>>> PERF: SmapsFileParser unnecessary dynamic_cast >>>> >>>> VXL Maintainers (4): >>>> VNL 2016-05-15 (14f97ab4) >>>> VNL 2016-06-22 (23a93adb) >>>> VNL 2016-06-29 (d62a2d70) >>>> VNL 2016-07-06 (acfa62cc) >>>> >>>> Vladimir S. FONOV (1): >>>> COMP: Build against GCC 5.3.1 >>>> >>>> Zach Williamson (2): >>>> ENH: Update Remote Module Tags >>>> BUG: Fix Python Wrappings in C++11 >>>> >>>> Ziv Yaniv (1): >>>> BUG: Metric sampling percentage accepted values outside (0.0, 1.0]. >>>> >>>> >>>> ITK Software Guide Changes >>>> ---------------------------------------- >>>> >>>> Matt McCormick (8): >>>> DOC: Move the location for obtaining the software >>>> DOC: Remove reference to ITKApps >>>> ENH: Bump ITK ExternalProject version to 2016-11-02 master >>>> DOC: Document the ITK module registry >>>> ENH: Bump ITK ExternalProject version to v4.11rc01 master >>>> DOC: Update CMake hyperlinks >>>> DOC: Update minimum required CMake version to 2.8.9 >>>> DOC: Add section on static and shared libraries. >>>> >>>> >>>> ITK Sphinx Examples Changes >>>> ------------------------------------------- >>>> >>>> Matt McCormick (6): >>>> BUG: Use GDCM ITK module name >>>> ENH: Rename ReadDICOMSeriesAndWrite3DImage >>>> BUG: Add tests for ReadDICOMSeriesAndWrite3DImage >>>> ENH: Bump ITK Superbuild version to 2016-09-20 master >>>> ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage >>>> ENH: Add Python version of CreateAnRGBImage >>>> >>>> Michka Popoff (5): >>>> ENH: Use same Python interpreter as ITK for wrapping tests >>>> BUG: Fix ResampleAnImage example (Python3) >>>> ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRe >>>> gionOfAnImage >>>> ENH: Add 7 Python examples to Core/Common >>>> ENH: Add BoundingBoxOfAPointSet Python example >>>> >>>> >>>> ----------------------------------------------------- >>>> Errors or omissions? Please fix them here: >>>> >>>> >>>> https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFr >>>> A54KRvf__4oeT0ymzZg/edit >>>> _______________________________________________ >>>> Powered by www.kitware.com >>>> >>>> Visit other Kitware open-source projects at >>>> http://www.kitware.com/opensource/opensource.html >>>> >>>> Kitware offers ITK Training Courses, for more information visit: >>>> http://kitware.com/products/protraining.php >>>> >>>> Please keep messages on-topic and check the ITK FAQ at: >>>> http://www.itk.org/Wiki/ITK_FAQ >>>> >>>> Follow this link to subscribe/unsubscribe: >>>> http://public.kitware.com/mailman/listinfo/insight-developers >>>> >>> >>> >>> _____________________________________ >>> Powered by www.kitware.com >>> >>> Visit other Kitware open-source projects at >>> http://www.kitware.com/opensource/opensource.html >>> >>> Kitware offers ITK Training Courses, for more information visit: >>> http://www.kitware.com/products/protraining.php >>> >>> Please keep messages on-topic and check the ITK FAQ at: >>> http://www.itk.org/Wiki/ITK_FAQ >>> >>> Follow this link to subscribe/unsubscribe: >>> http://public.kitware.com/mailman/listinfo/insight-users >>> >>> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From taylor at braun-jones.org Thu Jan 19 17:00:05 2017 From: taylor at braun-jones.org (Taylor Braun-Jones) Date: Thu, 19 Jan 2017 17:00:05 -0500 Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.11 Release Candidate 2 is ready for testing! In-Reply-To: References: Message-ID: Cool, thanks D?enan! On Thu, Jan 19, 2017 at 2:14 PM, D?enan Zuki? wrote: > ... and more: > > Additionally, we've added ITK and VTK libraries from GitHub to our daily > compiler testing and validations. So in short, from now on we will be > releasing MSVC compiler versions to the public where live GitHub ITK and > VTK sources will build clean. That's a promise :). > > Thanks, > Ulzii Luvsanbat > Visual C++ Team > > On Thu, Jan 19, 2017 at 1:21 PM, D?enan Zuki? wrote: > >> A new reply in that bug report: >> >> Hi, there's a lag when we, the compiler team, tags the bug resolved and >> the fix actually gets included in the VS release. We apologize for that, >> it's just the way how engineering works to get everything ready in VS to be >> shipped. This specific bug has been fixed for the VS2017 RC3 release, which >> is only days away from shipping. >> >> If you'd you like to validate your project before that with a private >> Nuget package of the compiler toolset, then please send me an email here >> (batul at Microsoft dot com), and I can get you going. >> >> On Thu, Jan 19, 2017 at 12:46 PM, D?enan Zuki? wrote: >> >>> Hi Taylor, >>> >>> I submitted a bug >>> >>> report to Microsoft about it, and somebody said they will add ITK to their >>> compiler test suite. Also, that crashing bug was supposedly fixed for >>> "final release". >>> >>> Regards, >>> D?enan >>> >>> On Thu, Jan 19, 2017 at 12:18 PM, Taylor Braun-Jones < >>> taylor at braun-jones.org> wrote: >>> >>>> Any chance the 4.11 release could have at least some preliminary >>>> support for VS2017? Right now it crashes the compiler: >>>> >>>> C:\src\itk\modules\core\common\include\itkPromoteType.h(97): fatal >>>> error C1001: An internal error has occurred in the compiler. >>>> (compiler file 'msc1.cpp', line 1469) >>>> To work around this problem, try simplifying or changing the program >>>> near the locations listed above. >>>> Please choose the Technical Support command on the Visual C++ >>>> Help menu, or open the Technical Support help file for more information >>>> Internal Compiler Error in C:\PROGRA~2\MIB055~1\2017\COMM >>>> UN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe. You will be >>>> prompted to send an error report to Microsoft later. >>>> INTERNAL COMPILER ERROR in 'C:\PROGRA~2\MIB055~1\2017\COM >>>> MUN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe' >>>> Please choose the Technical Support command on the Visual C++ >>>> Help menu, or open the Technical Support help file for more >>>> information >>>> >>>> Taylor >>>> >>>> On Mon, Jan 16, 2017 at 4:18 PM, Matt McCormick < >>>> matt.mccormick at kitware.com> wrote: >>>> >>>>> On behalf of the Insight Toolkit community, we are proud to announce >>>>> that ITK 4.11 release candidate 2 has been tagged and is available for >>>>> testing! Please take this opportunity to test the new features in the >>>>> release candidate. >>>>> >>>>> >>>>> To obtain the source code, use the links: >>>>> >>>>> >>>>> https://github.com/Kitware/ITK/archive/v4.11rc02.zip >>>>> https://github.com/Kitware/ITK/archive/v4.11rc02.tar.gz >>>>> >>>>> or >>>>> >>>>> git clone https://itk.org/ITK.git >>>>> cd ITK >>>>> git checkout -q --detach v4.11rc02 >>>>> >>>>> For more details, please see the Git documentation [1]. >>>>> >>>>> >>>>> A few selected highlights for this release: >>>>> >>>>> - Remote Modules were added to: perturb mesh vertices with additive >>>>> gaussian noise, accurately benchmark computational performance, >>>>> perform principal components analysis of scalar, vector, and mesh >>>>> vertex data, create a run-length encoded memory compression scheme for >>>>> itk::Image, run N-D morphological contour interpolation, interpolate >>>>> multi-label images, iterate over multiple images simultaneously, and >>>>> compute inverse displacement fields. >>>>> - NumPy bridge support is now enabled by default with NumPy array >>>>> views of multi-component images and VNL vectors and matrices. >>>>> - Internal HDF5 was updated to the latest upstream version along >>>>> with a number of other third-party libraries. >>>>> >>>>> >>>>> This release introduces a new template class export specification >>>>> macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated >>>>> classes to address failing dynamic_cast's and exception catching >>>>> across binaries on Mac OSX. >>>>> >>>>> Bugs were addressed and improvements were made to how the >>>>> pseudo-random number generator is used. Tests that rely on the random >>>>> number generator should explicitly set the global seed at start: >>>>> >>>>> itk::Statistics::MersenneTwisterRandomVariateGenerator::GetI >>>>> nstance()->SetSeed( >>>>> 121212 ); >>>>> >>>>> To improve randomness, new instances of the generator start from a >>>>> different seed; some minor differences in the output of algorithms >>>>> that uses the generator, like mutual information metrics, should be >>>>> expected. >>>>> >>>>> Additionally, output may change for registration with composite affine >>>>> transforms; the v4 registration framework now uses corner sampling as >>>>> opposed to random sampling to estimate their parameter scales. >>>>> >>>>> >>>>> Please test the release candidate and share your experiences on the >>>>> mailing list, issue tracker, and Gerrit Code Review. >>>>> >>>>> >>>>> An Experimental build, which demonstrates how the test suite performs >>>>> on your local build system, can be submitted to the dashboard [2] >>>>> with: >>>>> >>>>> mkdir ../ITK-build >>>>> cd ../ITK-build >>>>> cmake ../ITK >>>>> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit >>>>> >>>>> Visual Studio builds must also add ?-C Release? to the ctest command. >>>>> >>>>> Notify the mailing list if there are any unexpected failures. Testing >>>>> your own applications against the RC is also appreciated. >>>>> >>>>> >>>>> Congratulations to the 31 contributors to this release. We would >>>>> especially like to recognize the new contributors: Hastings Greer, >>>>> Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, >>>>> Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss >>>>> Jallais. >>>>> >>>>> >>>>> The 4.11.0 final release is scheduled for January 23rd. >>>>> >>>>> >>>>> [1] http://www.itk.org/Wiki/ITK/Git >>>>> >>>>> [2] http://open.cdash.org/index.php?project=Insight >>>>> >>>>> >>>>> New Features >>>>> ------------ >>>>> >>>>> * Wrapping Improvements >>>>> - Python GetArrayFromImage() and GetImageFromArray() from >>>>> ITKBridgeNumPy are directly accessible from the Python itk namespace. >>>>> - The itk package loads much faster: individual modules are loaded >>>>> only when required. >>>>> - Conversion of ITK images from and to NumPy array using Bridge >>>>> NumPy supports RGB, RGBA, and Vector images. >>>>> - VNL vectors and VNL matrices can be converted from and to NumPy >>>>> objects with respectively the new couple of functions >>>>> GetArrayFromVnlVector()/GetVnlVectorFromArray() and >>>>> GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() >>>>> - The global timestamp is used across all ITK Python modules when >>>>> built statically >>>>> - Wrap additional classes such as KernelFunctionBase >>>>> - itk_python_add_test CMake function added for Python script testing >>>>> in ITK modules >>>>> >>>>> * New Remote Modules >>>>> - DVMeshNoise >>>>> - Perturbing mesh vertices with additive gaussian noise >>>>> - http://hdl.handle.net/10380/3567 >>>>> - PerformanceBenchmarking >>>>> - Accurate benchmarking of computational performance >>>>> - http://hdl.handle.net/10380/3557 >>>>> - PrincipalComponentsAnalysis >>>>> - Principal components analysis of scalar, vector, and mesh vertex >>>>> data >>>>> - http://hdl.handle.net/10380/3386 >>>>> - RLEImage >>>>> - Run-length encoded memory compression scheme for itk::Image >>>>> - http://hdl.handle.net/10380/3562 >>>>> - MorphologicalContourInterpolation >>>>> - N-D morphological contour interpolation >>>>> - http://hdl.handle.net/10380/3563 >>>>> - GenericLabelInterpolator >>>>> - A generic interpolator for multi-label images >>>>> - http://hdl.handle.net/10380/3506 >>>>> - MultipleImageIterator >>>>> - Iterate over multiple images simultaneously >>>>> - http://hdl.handle.net/10380/3455 >>>>> - FixedPointInverseDisplacementField >>>>> - Computes inverse displacement field >>>>> - http://hdl.handle.net/10380/3222 >>>>> >>>>> * Core Improvements >>>>> - New ITK_TEMPLATE_EXPORT for templated classes resolves >>>>> cross-binary dynamic_cast on Mac OSX >>>>> - New MersenneTwisterRandomVariateGenerator instances are >>>>> initialized with different seeds >>>>> - Use compiler feature detection in CMake for C++11 features, etc. >>>>> - New CMake macro itk_module_add_library for creating libraries in >>>>> ITK modules >>>>> - Improved support for ccache and distcc with >>>>> CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) >>>>> - Support for .sha512 ExternalData content links >>>>> - GitHub Pages and data.kitware.com ExternalData repositories added >>>>> - GPGPU system support for C++11 >>>>> - Support of new compilers: Visual Studio 15 and XCode 8.2.1 >>>>> (clang-800.0.42.1) >>>>> >>>>> * Filtering Improvements >>>>> - HessianToObjectnessMeasure moved out of the ITKReview module >>>>> - New UnsharpMaskImageFilter for image edge enhancement >>>>> >>>>> * IO Improvements >>>>> - TransformFactory class has been moved to a separate module >>>>> - Spline order added to BSplineTransform identifier >>>>> - Improved NIFTI orientation support >>>>> >>>>> * Documentation Improvements >>>>> - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples >>>>> >>>>> * Third Party Library Updates >>>>> - pygccxml updated to v1.8.0 >>>>> - VNL updated to latest upstream (2016.07.06) >>>>> - SWIG updated to v3.0.11 >>>>> - KWSys updated to latest upstream (2016.11.21) >>>>> - HDF5 updated to v1.8.17 >>>>> - SCIFIO updated to latest upstream (2016.12.01) >>>>> - DCMTK updated to 3.6.1_20121012 >>>>> - CastXML to latest upstream (2016.01.28) >>>>> >>>>> * Improved Code Coverage -- we are at 85.44%! >>>>> - Jon Haitz-Legarreta's extensive code coverage improvements >>>>> - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ >>>>> >>>>> * *Lots* of important bug fixes >>>>> >>>>> * And much more! See details in the log below. >>>>> >>>>> >>>>> Changes from v4.11rc01 to v4.11rc02 >>>>> ----------------------------------- >>>>> >>>>> Bradley Lowekamp (5): >>>>> BUG: Remove unused SimpleImageRegistrationTest baselines >>>>> ENH: Expose GetNextSeed method in MersenneTwiseter Generator >>>>> BUG: Add option for fixed seed or wall clock seed for sampling >>>>> BUG: Use metric random seed in v3 examples >>>>> BUG: Prefer setting seed at algorithm in "v4" tests. >>>>> >>>>> Francois Budin (3): >>>>> ENH: Update BridgeNumPy to latest version on 2017.01.08 to >>>>> address ITK-3511 >>>>> BUG: Extra \$ in doxygen comment >>>>> BUG: Binary include directory added only if enabled shared >>>>> >>>>> Jon Haitz Legarreta (2): >>>>> DOC: Document itkLabelOverlapMeasuresImageFilter methods. >>>>> DOC: Fix ITKImageNoise filters' doc TeX errors. >>>>> >>>>> Matthew McCormick (1): >>>>> BUG: Remove invalid ImageRegistration4Test.png.sha512 >>>>> >>>>> Max Smolens (1): >>>>> DOC: Fix itkUnsharpMaskImageFilter documentation typos >>>>> >>>>> Simon Rit (1): >>>>> BUG: ITK-based software was crasing when thread creation failed >>>>> >>>>> >>>>> Changes from v4.10.0 to v4.11rc01 >>>>> --------------------------------- >>>>> >>>>> Bill Lorensen (4): >>>>> COMP: Restore support for clang 3.0 compiler >>>>> COMP: Consistent use of ModifiedTimeType >>>>> ENH: Bump WikiExamples remote module version >>>>> ENH: Bump WikiExamples version >>>>> >>>>> Bradley Lowekamp (57): >>>>> ENH: Add registered TrasformIO's to exception >>>>> ENH: Use template or constant for loop stop condition >>>>> ENH: Updating SWIG version to 3.0.9 >>>>> COMP: Address VS9 ambiguous std::abs call in Haung calculator >>>>> COMP: Fix undefined NumericTraits::Zero and One errors with >>>>> mingw64 >>>>> BUG: Fix segfault if ~CleanUpObjectFactory called multiple times >>>>> BUG: Address itkHDF5ImageIO test failures for mingw64 >>>>> BUG: demonstrate dynamic_cast failure when reading transforms >>>>> BUG: Address itkHDF5ImageIO test failures for mingw64 >>>>> ENH: Updating SWIG version to 3.0.10 >>>>> ENH: Enable CMP0063 New behavior >>>>> COMP: Enable hidden visibility property with vxl static libraries >>>>> COMP: Enable hidden visibility property with HDF5 static libraries >>>>> COMP: Enable hidden visibility property with HDF5 static libraries >>>>> BUG: Match Add2 function to AddImageFilter documentation >>>>> ENH: Improve support for std::complex with PowImageFilter >>>>> ENH: Explicitly mark required files for dependent tests >>>>> COMP: Bypass XCode 7.3,8 internal compilation error >>>>> COMP: Address CMake configuration error with itkJPEG2000Test03 >>>>> property >>>>> BUG: Correct test's REQUIRED_FILES to only the input. >>>>> ENH: move HessianToObjectnessMeasure filter out of Review >>>>> ENH: Separate TransformFactory class into separate module >>>>> DOC: Add links between similar label to rgb filters >>>>> ENH: Separate data from function calls >>>>> COMP: Fix changed Graft method >>>>> ENH: Reduce template dependencies on CalculateRotationMatrix >>>>> ENH: Add Functor Accessors to LabelMapToRGB filter >>>>> BUG: Enable VirtualDomain and FixedTransform in RegMethv4 >>>>> BUG: Use BSpline Order 3 for 2D in transform factory. >>>>> ENH: Add spline order to BSplineTransform's string id >>>>> ENH: Adding initial CircleCi configuration file >>>>> COMP: Fix float to unsigned integer conversion warnings >>>>> BUG: Include installed modules in ITK_MODULES_ENABLED >>>>> COMP: Address CMake error that ITKGPUCommon is not in export >>>>> COMP: Address wrong library types with VS and shared libraries >>>>> BUG: Ensure CreateImageIO is concurrent thread safe >>>>> ENH: Mark HDF5 CMake options as internal >>>>> COMP: Add template export declaration for ParametricPath >>>>> COMP: Correct TEMPLATE_EXPLICIT definition in Path module >>>>> ENH: Factor out common code in the TrasformFactoryBase >>>>> registration >>>>> ENH: Add CMake variable for max transform dimension, defaults 4 >>>>> ENH: Create CMake module to check for private RTTI compatibility >>>>> ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT >>>>> COMP: Correct ifndef value to allow user defined >>>>> ITK_TEMPLATE_EXPORT >>>>> BUG: Add explicit instantiate for ObjectToObjectOptimizerBase >>>>> COMP: Use add_definitions for CMake 2.8.9 compatibility >>>>> COMP: Add warning suppression for distcc warning >>>>> ENH: Explicitly instantiate the optimizer base over float >>>>> BUG: Use IsLinear to check if transform is "affine" >>>>> ENH: Remove unneeded includes of random iterator header >>>>> ENH: Improve thread-safety for Generator, and unique New sequence >>>>> ENH: Do not use global random generator >>>>> BUG: Update v3 registration metrics to use local seed >>>>> ENH: Prefer setting local seed over global in tests. >>>>> ENH: Update SWIG to latest 3.0.11 release >>>>> BUG: relax testing parameters for v3 translation registration >>>>> BUG: Restore baseline for debug registration >>>>> >>>>> Caspar Goch (2): >>>>> BUG: Use printable type for RGBA pixel ostream for ITK-3501 >>>>> STYLE: Remove extra space for ITK-3501 >>>>> >>>>> Christina Rossmanith (1): >>>>> DOC: Added more details to the class Doxygen documentation. >>>>> >>>>> Davis Vigneault (2): >>>>> COMP: VCL_DEFINE_SPECIALIZATION not defined >>>>> ENH: Add remote module DVMeshNoise >>>>> >>>>> D?enan Zuki? (27): >>>>> BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) >>>>> ENH: Adding MultipleImageIterator as a remote module >>>>> COMP: enables TBB 4.4 back-end for VTK7's SMP >>>>> COMP: enabling position independent code flag for FFTW >>>>> ENH: adding configuration file for code reformatting tool >>>>> clang-format >>>>> ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 >>>>> COMP: Fixing -fPIC flag passing with Ninja build system >>>>> ENH: Adding RLEImage as a remote module >>>>> ENH: Updating uncrustify configuration to current git version >>>>> STYLE: better compliance with ITK style >>>>> STYLE: A new option in uncrustify, updating the config file >>>>> accordingly >>>>> ENH: Adding MorphologicalContourInterpolation as a remote module >>>>> ENH: improving documentation >>>>> BUG: fixing buffer growing endlessly, as reported by Timothee >>>>> Evain >>>>> BUG: fixing buffer growing endlessly, as reported by Timothee >>>>> Evain >>>>> STYLE: default uncrustify configuration file is less aggressive >>>>> COMP: Fixing warning >>>>> COMP: VS15 compiler fix >>>>> BUG: casting -9 to unsigned produced unwanted result >>>>> BUG: Ensuring consistency between debug and release >>>>> COMP: Updating LesionSizingToolkit after some recent compile fixes >>>>> COMP: respect option METAIO_USE_NAMESPACE >>>>> ENH: updating version of AnisotropicDiffusionLBR >>>>> ENH: adding UnsharpMaskingImageFilter >>>>> COMP: explicitly cast to output type >>>>> BUG: double call to update would cause empty output image >>>>> ENH: Updating RLEImage remote module. Change-log: >>>>> >>>>> Eugene Prilepin (4): >>>>> ENH: Add the "ITK_USE_GPU" to ITK Config >>>>> BUG: Fix API for set/get "LaplacianImageFilter" object >>>>> ENH: Add support of images types with the 'CovariantVector' pixel >>>>> type >>>>> ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap >>>>> >>>>> Francois Budin (52): >>>>> ENH: Adding GetArrayFromImage in python itk namespace >>>>> ENH: Adding GetImageFromArray in python itk namespace >>>>> ENH: *_WRAP_* variable per external module >>>>> BUG: ImportImageFilter not responsible of memory management >>>>> ENH: New remote module GenericLabelInterpolator >>>>> DOC: SetNumberOfOutputs had wrong comment >>>>> BUG: lazyAttributes dictionary keys could be over-ridden >>>>> BUG: lazyAttributes dictionary keys could be over-ridden >>>>> BUG: Fix recent update of HDF5 (1.8.17) >>>>> ENH: Update SCIFIO to latest version on 08/23/2016 >>>>> ENH: Addition of the remote module FixedPointInverseDisplacementF >>>>> ield >>>>> ENH: Update SCIFIO to latest version on 08/29/2016 >>>>> BUG: Path to commit was relative instead of absolute >>>>> ENH: Path to SetupForDevelopment is relative, not absolute >>>>> BUG: LSMImageIO write function was not checking image dimension >>>>> BUG: LSMImageIO was not checking correctly image dimension >>>>> BUG: Missing associated test data >>>>> BUG: Missing associated test data >>>>> ENH: Bump CMakeLists.txt version to 4.10.1. >>>>> BUG: Quotes are not escaped in configured cmake file >>>>> ENH: Improving API of Graft() in itk::Image >>>>> ENH: Updating ITKGenericLabelInterpolator remote module >>>>> ENH: Update ITKIOTransformDCMTK remote module >>>>> BUG: Factory registration should depend on ITK_BUILD_SHARED >>>>> COMP: Updating DCMTK compilation for Ninja >>>>> ENH: Update version of DCMTK to 3.6.1_20121012 >>>>> ENH: Update SCIFIO to latest version on 10/25/2016 >>>>> BUG: Swig and PCRE do not support space in installation paths >>>>> BUG: exit() call from within piped commands was not exiting the >>>>> script >>>>> BUG: Typo in folder creation command >>>>> ENH: Only display message for transform registered multiple times >>>>> in debug >>>>> ENH: Image spacing must be positive >>>>> BUG: Supported extensions by PNG IO were not added in constructor. >>>>> DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. >>>>> ENH: Update SCIFIO to lastest (2016.12.01) >>>>> ENH: FixedPointInverseDisplacementField moved to >>>>> InsightSoftwareConsortium >>>>> COMP: Remove compilation warnings >>>>> ENH: Improved support of ccache and distcc >>>>> BUG: GPUImage regression due to API change. >>>>> ENH: Update Bridge Numpy (2016.12.05) >>>>> ENH: Update VariationalRegistration to remove warnings during >>>>> compilation >>>>> ENH: FindPythonLibs does not support both debug and release >>>>> python libraries >>>>> ENH: Update VariationalRegistration >>>>> BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of >>>>> itk::ImageBase >>>>> BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper >>>>> BUG: Missing ITK_TEMPLATE_EXPORT in templated class >>>>> BUG: Remove linkage warnings on MacOS >>>>> BUG: HDF5 CMake installation directory variable had not been >>>>> updated >>>>> BUG: Missing include header in AnisotropicDiffusionBLR remote >>>>> module hxx files >>>>> COMP: Silencing unused variable warning in itkTimeStamp >>>>> STYLE: Improve style checking by using module >>>>> ITKKWStyleOverwrite.txt >>>>> COMP: OS*Barrier functions are deprecated on MacOS 10.12 >>>>> >>>>> GCC-XML Upstream (1): >>>>> ENH: pygccxml v1.8.0 (reduced) >>>>> >>>>> Gert Wollny (1): >>>>> BUG: Relax vnl_complex floating point comparisons for i386 >>>>> >>>>> Gilles Filippini (1): >>>>> BUG: Use NATIVE_HBOOL for encoding HDF5 types. >>>>> >>>>> HDF Group (1): >>>>> ENH: hdf5 1.8.17-r30218 (reduced) >>>>> >>>>> Hans Johnson (23): >>>>> COMP: Use cmake WriteCompilerDetectionHeader >>>>> ENH: Use itk_compiler_detection versions >>>>> COMP: Need ITK_NOEXCEPT_OR_THROW macro. >>>>> COMP: Provide consistent granular C++11 support >>>>> STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT >>>>> STYLE: Prefer to use consistent definitions >>>>> COMP: Improve robustness of identifying the compiler standard used >>>>> BUG: try_compile for AlignAs were always failing >>>>> STYLE: Provide a well documented macro for repeated code >>>>> STYLE: Delete functions in consistent way >>>>> COMP: GPU baseclass ivars need to be protected >>>>> COMP: Remove unnecessary circular dependancy >>>>> COMP: Add long long usage for HDF5 >>>>> COMP: Add long long usage for HDF5 >>>>> STYLE: Prefer static small array to dynamic array >>>>> BUG: Confusing interface for FFTW wisdom files >>>>> STYLE: Output dimension from OutputImageType >>>>> STYLE: Code review style cleanups >>>>> STYLE: Prefer to use ITK AssertOrThrow macros >>>>> ENH: Add OverrideBoundaryCondition logic >>>>> ENH: Provide mechanism for enhanced NIFTI support >>>>> BUG: Use NIFTI sform/qform conventions correctly >>>>> ENH: Remove ambiguity about sform/qform >>>>> >>>>> Hastings Greer (8): >>>>> BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically >>>>> BUG: make itkTriangleHelper instantiable to ease wrapping >>>>> BUG: remove lsqr because of license issues ITK 1160 >>>>> BUG: make itkTriangleHelper instantiable to ease wrapping >>>>> BUG: initialize X to zero in lsmr Solve >>>>> BUG: Labled Point Set Registration: test multiple labels >>>>> BUG: Fix python wrapping of Cuberille remote module >>>>> BUG: Add test demonstrating Python global timestamp issue >>>>> >>>>> Jean-Christophe Fillion-Robin (5): >>>>> STYLE: UseITK: Set ImageIO exceptions using new convention. See >>>>> #3393 >>>>> STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 >>>>> STYLE: Update MeshIO factories to use RegisterFactoryInternal. >>>>> See #3393 >>>>> STYLE: MeshIO: Move MeshFileWriterException into its own file. >>>>> See #3393 >>>>> STYLE: MeshIO: Remove unused include from headers. See #3393 >>>>> >>>>> Johan Andruejol (3): >>>>> ENH: Add missing itkKernelFunctionBase wrapping >>>>> ENH: Add PrincipalComponentsAnalysis remote module >>>>> COMP: Override cannot be used with inline >>>>> >>>>> Jon Haitz Legarreta (216): >>>>> ENH: Improve itkFlatStructutingElement coverage. >>>>> ENH: Improve itkPathToImageFilter class coverage. >>>>> ENH: Improve itkIsolatedWatershedImageFilter coverage. >>>>> ENH: Improve itkLogSigmoidTransferFunction coverage. >>>>> STYLE: Improve itkBSplineTransform doc style. >>>>> ENH: Improve GaborKernelFunctionCoverage. >>>>> PERF: Remove duplicate itkMath include >>>>> STYLE: Move the PrintSelf method to the end >>>>> STYLE: Improve the itkScalarToRGBColormapImageFilter style. >>>>> STYLE: Delete duplicate method documentation >>>>> STYLE: Remove method documentation from implementation file >>>>> STYLE: Improve GACLevelSet classes' style >>>>> STYLE: Improve test style >>>>> ENH: Improve itkGaussianDerivativeImageFilter coverage. >>>>> ENH: Improve the itkScalarToRGBColormapImageFilter coverage >>>>> STYLE: Improve itkScalarToRGBColormap test style >>>>> ENH: Improve GACLSImageFilter classes' coverage >>>>> STYLE: Improve comment style in GACLS tests >>>>> ENH: Improve itkImportImageFilter coverage >>>>> ENH: Improve itkVideoFileReader coverage >>>>> ENH: Improve itkVideoFileWriter coverage >>>>> STYLE: Improve the itkVideoFileWriter style. >>>>> STYLE: Imrpove itkVideoFileReader style. >>>>> ENH: Improve the itkBSplineControlPointImageFunction coverage >>>>> STYLE: Improve the itkIntensityWindowingImageFilter style >>>>> STYLE: Improve the itkIntensityWindowingImageFilter test style >>>>> ENH: Improve ImageToSpatialObjectRegistrationMethod coverage >>>>> STYLE: Improve test style >>>>> ENH: Improve MaskNeighborhoodOperatorImageFilter coverage >>>>> ENH: Improve itkMeshFileWriter coverage >>>>> ENH: Improve RescaleIntensityImageFilter coverage. >>>>> ENH: Improve itkClampImageFilter coverage. >>>>> BUG: Fix ivar type casting in PrintSelf. >>>>> STYLE: Improve MRIBiasFieldCorrectionFilter style. >>>>> ENH: Improve MRIBiasFieldCorrectionFilter coverage. >>>>> ENH: Improve itkIntensityWindowingImageFilter coverage >>>>> BUG: Fix Run-time type information in CSV module classes. >>>>> ENH: Improve the itkHistogram class code coverage. >>>>> DOC: Fix documentation typo. >>>>> STYLE: Improve the ImproveRescaleIntensityImageFilter style. >>>>> PERF: Make the itkVideoFileReader ivars private >>>>> PERF: Make itkVideoFileWriter ivars private >>>>> ENH: Improve coverage for itk::OrientImageFilter. >>>>> STYLE: Improve itk::OrientImageFilter class style. >>>>> ENH: Improve itkCSVNumericObjectFileWriter coverage. >>>>> ENH: Add missing standard class typdefs. >>>>> ENH: Improve itkVoronoiSegmentationImageFilter coverage. >>>>> ENH: Improve itkVoronoiSegmentationImageFilter style. >>>>> STYLE: Improve the MalahanobisDistanceThresholdImageFunction >>>>> style. >>>>> ENH: Improve coverage for itkMalahanobisDistanceThreshold. >>>>> ENH: Improve itk::MinimumMaximumImageCalculator coverage. >>>>> ENH: Improve itkMinimumMaximumImageCalculator style. >>>>> BUG: Fix type mismatch in test. >>>>> STYLE: Improve itkPolylineMaskImagefilter style. >>>>> ENH: Improve itkPolylineMaskImageFilter coverage. >>>>> ENH: Improve itkFileListVideoStyle. >>>>> ENH: Improve itkLandmarkBasedTransformInitializer coverage. >>>>> ENH: Add baseline image to itkPolylineMaskImageFilter test. >>>>> ENH: Improve coverage for itkBSplineTransformInitializer. >>>>> STYLE: Improve itkBSplineTransformInitializer doc style. >>>>> ENH: Enhance itkBSplineTransformInitializer implementation. >>>>> DOC: Fix typo in method documentation. >>>>> ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. >>>>> STYLE: Improve the itkSimpleContourExtractorImageFilter style. >>>>> ENH: Exercise the class' Get methods. >>>>> ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. >>>>> ENH: Improve style for itkThresholdLabelerImageFilter. >>>>> ENH: Improve itkThresholdLabelerImageFilter coverage. >>>>> ENH: Get internal ImageIO via a const macro. >>>>> ENH: Improve the itkSimpleContourExtractorImageFilter coverage. >>>>> STYLE: Improve the itkMetaArray class style. >>>>> ENH: Improve MetaArrayReader/Writer coverages. >>>>> ENH: Improve the itkCovarianceImageFunction style. >>>>> STYLE: Improve itkVoronoiDiagram2DGenerator style. >>>>> ENH: Improve VoronoiDiagram2DGenerator coverage. >>>>> STYLE: Improve the itkBayesianClassifierImageFilter style. >>>>> STYLE: Improve the itkMetaArrayWriter style. >>>>> ENH: Improve itkCovarianteImageFunction coverage. >>>>> COMP: Fix signed/unsigned int comparison warning. >>>>> DOC: Improve itkGrayscaleDilateImageFilter documentation. >>>>> DOC: Improve documentation for itkGrayscaleErodeImageFilter. >>>>> DOC: Improve ConfigureHistogram method documentation. >>>>> STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. >>>>> BUG: Fix Superclass name in RTTI. >>>>> STYLE: Improve itkGaussianInterpolateImageFunction style. >>>>> ENH: Improve coverage for itkGaussianInterpolateImageFunction. >>>>> ENH: Improve itkBayesianClassifierImageFilter coverage. >>>>> ENH: Add itkBSplineControlPointImageFilter RTTI. >>>>> STYLE: Improve itkBSplinecontrolPointImageFilter style. >>>>> ENH: Improve itkBSplineControlPointImageFilter coverage. >>>>> ENH: Improve coverage for itkRegularStepGradientDescentO >>>>> ptimizerv4. >>>>> STYLE: Improve the class implementation file style. >>>>> STYLE: Improve the itkResampleImageFilter style. >>>>> DOC: Fix typo in GetMTime method doc. >>>>> STYLE: Remove out-of-body implementation doc >>>>> ENH: Improve itkResampleImageFilter coverage. >>>>> ENH: Improve itkAbsImageAdaptor and Filter coverage. >>>>> BUG: Fix itkLSMImageIO class' Superclass name. >>>>> ENH: Improve the itkInterpolateImagePointsFilter coverage. >>>>> ENH: Improve itkPowImageFilter coverage. >>>>> BUG: Fix ConvolutionImageFilter RTTI. >>>>> STYLE: Use initialization lists. >>>>> STYLE: Improve BinaryFunctorImageFilter style. >>>>> ENH: Improve itkMinimumImageFilter code coverage. >>>>> BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. >>>>> ENH: Improve MaximumImageFilter coverage. >>>>> BUG: Fix conversion to PixelType conversion. >>>>> COMP: Fix double to unsigned char conversion warning. >>>>> ENH: Improve coverage for itkNormalizeToConstantImageFilter. >>>>> BUG: Fix itkSquaredDifferenceErrorFunction RTTI. >>>>> ENH: Improve itkMeanImageFunctionCoverage. >>>>> ENH: Improve itkSquareImageFilter coverage. >>>>> STYLE: Improve the itkSquaredDifferenceErrorFunction style. >>>>> STYLE: Enhance style for itkNormalizeToConstantImageFilter. >>>>> STYLE: Improve itkMeanImageFunction style. >>>>> ENH: Remove unnecesary call to filter print. >>>>> ENH: Improve itkRegionOfInterestImageFilter coverage. >>>>> STYLE: Improve itkRegionOfInterestImageFilter style. >>>>> STYLE: Improve itkPasteImageFilter style. >>>>> STYLE: Improve itkJoinSeriesImageFilter style. >>>>> BUG: Fix itkPadLabelMapFilter RTTI Superclass. >>>>> COMP: Address std::cout.precision conversion warning. >>>>> ENH: Improve itkBayesianClassifiertImageFilter coverage. >>>>> ENH: Improve itkPadLabelMapFilter coverage. >>>>> ENH: Improve itkJoinSeriesImageFilter coverage. >>>>> ENH: Improve the itkPasteImageFilter coverage. >>>>> ENH: Improve MeanImageFilter coverage. >>>>> COMP: Address std::cout.precision conversion warning. >>>>> ENH: Improve TernaryMagnitudeImageFilter coverage. >>>>> ENH: Improve FFTConvolutionImageFilter coverage. >>>>> DOC: Fix class documentation in ternary magnitude filters. >>>>> ENH: Improve ConstrainedValueDifferenceImageFilter coverage. >>>>> ENH: Improve AndImageFilter coverage. >>>>> ENH: Add baseline test to itkTernaryMagnitudeImageFilter. >>>>> ENH: Use MD5 comparison framework in baseline test. >>>>> ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. >>>>> STYLE: Improve the itkVectorRescaleIntensityImageFilter style. >>>>> ENH: Print missing ivar in filter PrintSelf method. >>>>> ENH: Improve itkComplexToImaginaryFilter coverage. >>>>> ENH: Improve itkComplexToPhaseImageFilter coverage. >>>>> ENH: Improve itkComplexToModulusImageFilter coverage. >>>>> ENH: Improve itkComplexToRealImageFilter coverage. >>>>> ENH: Improve itkVectorResampleImageFilter coverage. >>>>> ENH: Add GetTransform method. >>>>> ENH: Improve itkConstrainedValueAdditionImageFilter coverage. >>>>> ENH: Improve itkModulusImageFilter coverage. >>>>> ENH: Improve itkLog10ImageFilter coverage. >>>>> ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. >>>>> ENH: Improve itkLogImageFilter coverage. >>>>> ENH: Improve itkInvertIntensityImageFilter coverage. >>>>> STYLE: Improve itkInvertIntensityImageFilter style. >>>>> DOC: Add missing doc to itkInvertIntensityImageFilter. >>>>> STYLE: Improve itkIntensityWindowingImageFilter style. >>>>> STYLE: Use initialization lists. >>>>> ENH: Improve itkIntensityWindowingImageFilter coverage. >>>>> ENH: Improve itkNaryMaximumImageFilter coverage. >>>>> COMP: Fix std::precision type casting warning. >>>>> ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. >>>>> STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod >>>>> style. >>>>> ENH: Remove SmartPointers being explicitly initialized to null. >>>>> STYLE: Improve the itkPointSetToImageRegistrationMethod style. >>>>> ENH: Improve itkPointSetToImageRegistration coverage. >>>>> STYLE: Change the name of the itkPointSetToImageRegistrationMethod >>>>> test. >>>>> STYLE: Improve itkVectorResampleImageFilter style. >>>>> STYLE: Improve the itkAntiAliasBinaryImageFilter style. >>>>> ENH: Improve trigonometric function filters' coverage. >>>>> STYLE: Remove test names from std::out messages. >>>>> ENH: Improve Boolean Algebra ImageFilters coverage. >>>>> STYLE: Improve the EuclideanDistancePointMetric style. >>>>> ENH: Improve itkSigmoidImageFilter coverage. >>>>> STYLE: Improve itkCropImageFilter style. >>>>> ENH: Improve itkCropImageFilter coverage. >>>>> ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. >>>>> ENH: Improve itkRescaleIntensityImageFilter coverage. >>>>> ENH: Improve the itkMatrixSelectionImageFilter coverage. >>>>> ENH: Improve itkTanImageFilter and Adaptor coverage. >>>>> ENH: Increase itkSqrtImageFilter and Adaptor coverage. >>>>> ENH: Increase itkTernaryOperatorImageFilter coverage. >>>>> ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. >>>>> STYLE: Improve itkScalarImagekmeansImageFilter style. >>>>> STYLE: Conform to TEST_SET_GET_VALUE definition. >>>>> BUG: Fix uninitialized variable due to dynamic analysis defect. >>>>> BUG: Fix uninitialized variable defect reported by valgrind. >>>>> ENH: Improve the itkPointSetToPointSetRegistrationTest. >>>>> ENH: Improve the itkPointSetToImageRegistrationTest. >>>>> ENH: Increas BinaryMagnitudeImageFilter coverage. >>>>> STYLE: Remove test name from std output. >>>>> ENH: Increase MagnitudeImageFilter coverage. >>>>> BUG: Fix uninitialized variable defect reported by valgrind. >>>>> BUG: Fix Superclass name in RTTI. >>>>> STYLE: Improve itkFrustumSpatialFunction style. >>>>> STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction >>>>> style. >>>>> BUG: Fix Superclass template argument list. >>>>> STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. >>>>> STYLE: Improve the itkCheckerBoardImageFilter class style. >>>>> ENH: Improve the itk::LabelVotingImageFilter coverage. >>>>> ENH: Improve itkCheckerBoardImageFilter coverage. >>>>> STYLE: Improve itk::LabelVotingImageFilter style. >>>>> STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. >>>>> ENH: Add test for itk::FrustumSpatialFunction class. >>>>> ENH: Improve itkConnectedThresholdImageFilter coverage. >>>>> STYLE: Improve itkConnectedThresholdImageFilter style. >>>>> BUG: Fix FrustumSpatialFunction internal precision conversion. >>>>> COMP: Fix implicit conversion warning. >>>>> STYLE: Improve itkThresholdImageFilter style. >>>>> ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. >>>>> BUG: Fix Superclass template argument list. >>>>> ENH: Improve itkUnsharpMaskingImageFilter implementation. >>>>> ENH: Improve the itkUnsharpMaskingImageFilter coverage. >>>>> ENH: Fix UnsharpMaskingImageFilter test inconsistencies. >>>>> BUG: Add missing itkTypeMacro. >>>>> DOC: Document the member variables. >>>>> BUG: Fix the itkImageSource RTTI class name, >>>>> STYLE: Improve itkLabelImageGaussianInterpolateImageFunction >>>>> style. >>>>> ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. >>>>> STYLE: Improve itkLabelOverlapMeasurementImageFilter style. >>>>> >>>>> KWSys Robot (6): >>>>> KWSys 2016-06-30 (96f06c8e) >>>>> KWSys 2016-10-23 (b630d2f5) >>>>> KWSys 2016-11-03 (37306a1c) >>>>> KWSys 2016-11-08 (2b3e2b1c) >>>>> KWSys 2016-11-09 (18c65411) >>>>> KWSys 2016-11-21 (cb55cf5a) >>>>> >>>>> Maeliss Jallais (1): >>>>> BUG: Add unsigned and signed short to the wrapping of vnl_matrix >>>>> >>>>> Matthew McCormick (85): >>>>> PERF: Simplify HilbertPath numberOfPathVertices computation. >>>>> BUG: CID 1355469 NNetClassifierTest4 unintended integer division. >>>>> BUG: Update Cuberille Remote for version check fix. >>>>> ENH: Bump ITK version to 4.11.0. >>>>> BUG: Fix HDF5ImageIO type information. >>>>> BUG: Fix H5File memory leak in HDF5ImageIO. >>>>> DOC: Collect Francois Budin's contributions in .mailmap >>>>> BUG: Limit WRAP_ITK_MODULES when building externally >>>>> STYLE: Improvements to ResourceProbe report output. >>>>> ENH: Add a useTabs argument to ResourceProbe::Report. >>>>> ENH: Add standard error measure to the ResourceProbe >>>>> ENH: Add itk_python_add_test function. >>>>> BUG: Remove VNL file from subtree merge. >>>>> COMP: Fix wrapping with a space in the Python include path >>>>> BUG: Fix PermuteAxesImageFilter pipeline method visibility >>>>> BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter >>>>> BUG: ResampleImageFilter honor isInside output of the transform >>>>> method >>>>> COMP: Avoid recursive include of itkMath.h >>>>> COMP: Fix VXL header installation locations >>>>> BUG: ClampImageFilterTest for older GCC, InPlaceOn >>>>> DOC: Add CONTRIBUTING.md file to the top level. >>>>> COMP: Update VariationalRegistration to address Doxygen warnings >>>>> BUG: Compiler detections file installed into ITK build tree >>>>> location >>>>> COMP: Do not use string(TIMESTAMP. >>>>> COMP: Remove HDF5 -std=c99 for C++ files >>>>> BUG: Do not build HDF5 static library with a shared build >>>>> ENH: Add PerformanceBenchmarking Remote Module >>>>> COMP: Remove duplicate wrappings for ResampleImageFilter >>>>> BUG: Put Python test output files in the build tree >>>>> BUG: Improve HDF5ImageIO::CloseDataSet name >>>>> COMP: Use add_python_test PythonLazyLoadingImage >>>>> COMP: Address missing override it itkFactoryTestLib.cxx >>>>> BUG: Index,Size,Offset constructors present in Python with C++11 >>>>> COMP: Address missing override it itkFactoryTestLib.cxx >>>>> BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT >>>>> ENH: Bump SetupForDevelopment version >>>>> BUG: Add missing ZLib deflate support to HDF5 >>>>> BUG: Address memory leak, remove NumPy build dep in BridgeNumPy >>>>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >>>>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >>>>> BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include >>>>> ITK_WRAP_IMAGE_DIMS >>>>> BUG: RichardsonLucyDeconvolutionImageFilter with non-null input >>>>> Image Origin >>>>> BUG: Fix inconsistent Twister start with Initialize(seed) and >>>>> SetSeed(seed) >>>>> BUG: Do not hard code CMake scripts in HDF5 >>>>> COMP: Workaround Emscripten ITKCommon test build failure >>>>> COMP: Do embed fancy HDF5 libsettings with Emscripten >>>>> COMP: Add missing H5T_patch_vlen_file declaration >>>>> ENH: Bump CastXML to 2016-10-11 master. >>>>> COMP: Workaround Emscripten ITKCommon test build failure >>>>> BUG: Swap CastXML hashes for Mac OSX and Windows >>>>> ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 >>>>> COMP: Fix VNL tests when cross-compiling >>>>> ENH: ExternalData multi-algorithm support >>>>> ENH: ExternalData support for data.kitware.com >>>>> BUG: Install missing H5pubconf.h >>>>> BUG: Use SpacePrecisionType in TileImageFilter >>>>> BUG: Use internal ExternalData_Add_Target >>>>> ENH: Run .sha512, .md5 simultaneous modification pre-commit check >>>>> BUG: Correct CastXML Windows binary >>>>> BUG: Support non-zero Index in LevelSetNeighborhoodExtractor >>>>> ENH: Add ArchiveTestingDataOnGirder.py >>>>> BUG: Correct AtanRegularizationHeavisideStepFunction derivative >>>>> ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh >>>>> BUG: Remove extra HessianToObjectness content links >>>>> ENH: Wrap SpatialFunction float types with ITK_WRAP_float >>>>> BUG: Bump PerformanceBenchmarking to 2016-11-04 >>>>> BUG: itk_python_expression_add_test too many quotes. >>>>> ENH: Wrap VectorImage with complex real pixel types >>>>> ENH: Bump PerformanceBenchmarking to 2016-11-07 >>>>> BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter >>>>> ENH: Create itk_module_add_library macro >>>>> BUG: Update computeCodeCoverageLocally.sh for KWStyle addition >>>>> COMP: Install a newer version of CMake on CircleCI >>>>> ENH: Use GitHub Pages as the first ExternalData resource >>>>> ENH: Add tests to demonstrate OSX dynamic_cast failure >>>>> BUG: Use random seed with for MersenneTwisterRandomVariateGe >>>>> nerator. >>>>> BUG: Enable program global timestamp >>>>> BUG: Set random number seed in Mattes metric test >>>>> BUG: Notify builder that ITK_DYNAMIC_LOADING is required with >>>>> wrapping >>>>> BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON >>>>> BUG: Set random number seed mutual information metric tests >>>>> BUG: Wrap std::vector< itk.Point > >>>>> BUG: Fix wrapping of LandmarkBasedTransformInitializer >>>>> BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter >>>>> DOC: Add D?enan Zuki? to .mailmap >>>>> >>>>> Max Smolens (4): >>>>> COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar >>>>> field >>>>> BUG: CID-1355438 QuadEdgeTest1 resource leaks >>>>> COMP: CID-1355472 MIRegistrationFunction unused value >>>>> COMP: Fix link errors for VNL template instantiations on Windows >>>>> >>>>> Mayeul Chassagnard (7): >>>>> BUG: Test added and error fixed in HDF5ImageIO >>>>> ENH: Update add_library TO itk_module_add_library >>>>> COMP: Set Policy CMP0023 target_link_libraries for >>>>> Modules/ThirdParty/VNLI... >>>>> BUG: Add ITK_TEMPLATE_EXPORT to template classes >>>>> BUG: Fix errors linked to dyn_cast merge >>>>> BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for >>>>> classes >>>>> BUG: dash3win7 dashboard build error unresolved external symbol >>>>> >>>>> Michka Popoff (3): >>>>> ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 >>>>> ENH: Update igenerator.py for pygccxml v1.8.0 >>>>> COMP: Use pygccxml's public API for apply definitions >>>>> >>>>> Pierre Barbier de Reuille (2): >>>>> COMP: Fix function naming error when using FFTWD >>>>> COMP: Fix function naming error when using FFTWD >>>>> >>>>> Sean McBride (1): >>>>> COMP: Bypass HDF5 bugs under TSan >>>>> >>>>> Simon Rit (2): >>>>> COMP: remove C++11 compiler warning for CUDA compilations >>>>> COMP: remove C++11 compiler warning for CUDA compilations >>>>> >>>>> Somesh Kashyap (2): >>>>> BUG: Override TransformCategoryType for >>>>> AzimuthElevationToCartesianTransform >>>>> BUG: -Added test case for itkAzimuthElevationToCartesian >>>>> Transform >>>>> >>>>> Sumedha Singla (1): >>>>> ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote >>>>> module >>>>> >>>>> Taylor Braun-Jones (4): >>>>> COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is >>>>> enabled >>>>> COMP: Fix truncation from double to float warning >>>>> DOC: Fix incorrect itkFactorylessNewMacro documentation >>>>> COMP: Only include the headers for required OpenCV modules >>>>> >>>>> Thien Nguyen (1): >>>>> PERF: SmapsFileParser unnecessary dynamic_cast >>>>> >>>>> VXL Maintainers (4): >>>>> VNL 2016-05-15 (14f97ab4) >>>>> VNL 2016-06-22 (23a93adb) >>>>> VNL 2016-06-29 (d62a2d70) >>>>> VNL 2016-07-06 (acfa62cc) >>>>> >>>>> Vladimir S. FONOV (1): >>>>> COMP: Build against GCC 5.3.1 >>>>> >>>>> Zach Williamson (2): >>>>> ENH: Update Remote Module Tags >>>>> BUG: Fix Python Wrappings in C++11 >>>>> >>>>> Ziv Yaniv (1): >>>>> BUG: Metric sampling percentage accepted values outside (0.0, >>>>> 1.0]. >>>>> >>>>> >>>>> ITK Software Guide Changes >>>>> ---------------------------------------- >>>>> >>>>> Matt McCormick (8): >>>>> DOC: Move the location for obtaining the software >>>>> DOC: Remove reference to ITKApps >>>>> ENH: Bump ITK ExternalProject version to 2016-11-02 master >>>>> DOC: Document the ITK module registry >>>>> ENH: Bump ITK ExternalProject version to v4.11rc01 master >>>>> DOC: Update CMake hyperlinks >>>>> DOC: Update minimum required CMake version to 2.8.9 >>>>> DOC: Add section on static and shared libraries. >>>>> >>>>> >>>>> ITK Sphinx Examples Changes >>>>> ------------------------------------------- >>>>> >>>>> Matt McCormick (6): >>>>> BUG: Use GDCM ITK module name >>>>> ENH: Rename ReadDICOMSeriesAndWrite3DImage >>>>> BUG: Add tests for ReadDICOMSeriesAndWrite3DImage >>>>> ENH: Bump ITK Superbuild version to 2016-09-20 master >>>>> ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage >>>>> ENH: Add Python version of CreateAnRGBImage >>>>> >>>>> Michka Popoff (5): >>>>> ENH: Use same Python interpreter as ITK for wrapping tests >>>>> BUG: Fix ResampleAnImage example (Python3) >>>>> ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRe >>>>> gionOfAnImage >>>>> ENH: Add 7 Python examples to Core/Common >>>>> ENH: Add BoundingBoxOfAPointSet Python example >>>>> >>>>> >>>>> ----------------------------------------------------- >>>>> Errors or omissions? Please fix them here: >>>>> >>>>> >>>>> https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFr >>>>> A54KRvf__4oeT0ymzZg/edit >>>>> _______________________________________________ >>>>> Powered by www.kitware.com >>>>> >>>>> Visit other Kitware open-source projects at >>>>> http://www.kitware.com/opensource/opensource.html >>>>> >>>>> Kitware offers ITK Training Courses, for more information visit: >>>>> http://kitware.com/products/protraining.php >>>>> >>>>> Please keep messages on-topic and check the ITK FAQ at: >>>>> http://www.itk.org/Wiki/ITK_FAQ >>>>> >>>>> Follow this link to subscribe/unsubscribe: >>>>> http://public.kitware.com/mailman/listinfo/insight-developers >>>>> >>>> >>>> >>>> _____________________________________ >>>> Powered by www.kitware.com >>>> >>>> Visit other Kitware open-source projects at >>>> http://www.kitware.com/opensource/opensource.html >>>> >>>> Kitware offers ITK Training Courses, for more information visit: >>>> http://www.kitware.com/products/protraining.php >>>> >>>> Please keep messages on-topic and check the ITK FAQ at: >>>> http://www.itk.org/Wiki/ITK_FAQ >>>> >>>> Follow this link to subscribe/unsubscribe: >>>> http://public.kitware.com/mailman/listinfo/insight-users >>>> >>>> >>> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From matt.mccormick at kitware.com Fri Jan 27 15:37:11 2017 From: matt.mccormick at kitware.com (Matt McCormick) Date: Fri, 27 Jan 2017 15:37:11 -0500 Subject: [ITK-dev] [ANN] ITK 4.11.0 has been released! Message-ID: The Insight Segmentation and Registration Toolkit (ITK), is an open-source, cross-platform library for multidimensional image analysis. On behalf of the Insight Toolkit community, we are proud to announce that ITK 4.11.0 has been released! Links to the Sourceforge.net tarballs can be found on the download page: http://www.itk.org/ITK/resources/software.html Outline ---------- 1. Introduction 2. New Features 3. ITK Changelog 4. ITK Sphinx Examples Changelog 5. ITK Software Guide Changelog Introduction ----------------- Developed by an international community, ITK collects best-of-breed algorithms for registering, segmenting, analyzing, and quantifying n-dimensional imaging data. The high-quality library facilitates reproducible research, provides a software resource for teaching image analysis, and offers a platform for commercial product development. A few selected highlights for the 4.11 release include the following: - Remote Modules were added to: perturb mesh vertices with additive gaussian noise, accurately benchmark computational performance, perform principal components analysis of scalar, vector, and mesh vertex data, create a run-length encoded memory compression scheme for itk::Image, run N-D morphological contour interpolation, interpolate multi-label images, iterate over multiple images simultaneously, and compute inverse displacement fields. - NumPy bridge support is now enabled by default with NumPy array views of multi-component images and VNL vectors and matrices. - Internal HDF5 was updated to the latest upstream version along with a number of other third-party libraries. Congratulations and well done to the 31 contributors to this release. We would especially like to recognize new contributors: Hastings Greer, Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss Jallais This release introduces a new template class export specification macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated classes to address failing dynamic_cast's and exception catching across binaries on Mac OSX. Bugs were addressed and improvements were made to how the pseudo-random number generator is used. Tests that rely on the random number generator can restore deterministic behavior by explicitly setting the global seed at start: itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance()->SetSeed( 121212 ); However, preferred practice is to set the seed at the algorithm level. The following methods can be used for this purpose: void itk::ImageToImageMetric< ? >::ReinitializeSeed( int seed ) void itk::ImageRegistrationMethodv4< ? >::MetricSamplingReinitializeSeed( int seed ) To improve randomness, new instances of the generator start from a different seed; some minor differences in the output of algorithms that use the generator, such as the ITKv3 mutual information metrics and ImageRegistrationMethodv4?s metric sampling point set, should be expected. Additionally, output may change for registration with composite affine transforms; the v4 registration framework now uses corner sampling as opposed to random sampling to estimate their parameter scales. New Features --------------------- * Wrapping Improvements - Python GetArrayFromImage() and GetImageFromArray() from ITKBridgeNumPy are directly accessible from the Python itk namespace. - The itk package loads much faster: individual modules are loaded only when required. - Conversion of ITK images from and to NumPy array using Bridge NumPy supports RGB, RGBA, and Vector images. - VNL vectors and VNL matrices can be converted from and to NumPy objects with respectively the new couple of functions GetArrayFromVnlVector()/GetVnlVectorFromArray() and GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() - The global timestamp is used across all ITK Python modules when built statically - Wrap additional classes such as KernelFunctionBase - itk_python_add_test CMake function added for Python script testing in ITK modules * New Remote Modules - DVMeshNoise - Perturbing mesh vertices with additive gaussian noise - http://hdl.handle.net/10380/3567 - PerformanceBenchmarking - Accurate benchmarking of computational performance - http://hdl.handle.net/10380/3557 - PrincipalComponentsAnalysis - Principal components analysis of scalar, vector, and mesh vertex data - http://hdl.handle.net/10380/3386 - RLEImage - Run-length encoded memory compression scheme for itk::Image - http://hdl.handle.net/10380/3562 - MorphologicalContourInterpolation - N-D morphological contour interpolation - http://hdl.handle.net/10380/3563 - GenericLabelInterpolator - A generic interpolator for multi-label images - http://hdl.handle.net/10380/3506 - MultipleImageIterator - Iterate over multiple images simultaneously - http://hdl.handle.net/10380/3455 - FixedPointInverseDisplacementField - Computes inverse displacement field - http://hdl.handle.net/10380/3222 * Core Improvements - New ITK_TEMPLATE_EXPORT for templated classes resolves cross-binary dynamic_cast on Mac OSX - New MersenneTwisterRandomVariateGenerator instances are initialized with different seeds - Use compiler feature detection in CMake for C++11 features, etc. - New CMake macro itk_module_add_library for creating libraries in ITK modules - Improved support for ccache and distcc with CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) - Support for .sha512 ExternalData content links - GitHub Pages and data.kitware.com ExternalData repositories added - GPGPU system support for C++11 - Support of new compilers: Visual Studio 15 and XCode 8.2.1 (clang-800.0.42.1) * Filtering Improvements - HessianToObjectnessMeasure moved out of the ITKReview module - New UnsharpMaskImageFilter for image edge enhancement * IO Improvements - TransformFactory class has been moved to a separate module - Spline order added to BSplineTransform identifier - Improved NIFTI orientation support * Documentation Improvements - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples * Third Party Library Updates - pygccxml updated to v1.8.0 - VNL updated to latest upstream (2016.07.06) - SWIG updated to v3.0.11 - KWSys updated to latest upstream (2016.11.21) - HDF5 updated to v1.8.17 - SCIFIO updated to latest upstream (2016.12.01) - DCMTK updated to 3.6.1_20121012 - CastXML to latest upstream (2016.01.28) * Improved Code Coverage -- we are at 85.44%! - Jon Haitz-Legarreta's extensive code coverage improvements - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ * *Lots* of important bug fixes * And much more! See details in the log below. Changes from v4.11rc02 to v4.11.0 --------------------------------------------------- Bradley Lowekamp (3): BUG: Add itk prefix to TIFF files in binary directory. BUG: Remove ITK_DISALLOW_COPY_AND_ASSIGN as Doxygen private BUG: First IterationEvent is at CurrentIteration==0 Francois Budin (3): ENH: Update SCIFIO to latest revision (2017.01.17) ENH: Update SCIFIO to lastest commit (01.21.2017) BUG: Alpha value created when converted image to RGBA is not always 1 Jon Haitz Legarreta (2): BUG: Fix uninitialized variables in itkGaussianInterpolateImageFunction. BUG: Fix RTTI Superclass name in itkLabelMapMaskImageFilter. Matthew McCormick (2): BUG: Fix cat/echo in ContentLinkSynchronization.sh ENH: Add missing SHA512 content links Richard Beare (1): BUG: Fix precision issues with poly-line FlatStructuring element Stephen Aylward (1): BUG: Target file for modules moved to subdir Targets. Changes from v4.11rc01 to v4.11rc02 --------------------------------------------------- Bradley Lowekamp (5): BUG: Remove unused SimpleImageRegistrationTest baselines ENH: Expose GetNextSeed method in MersenneTwiseter Generator BUG: Add option for fixed seed or wall clock seed for sampling BUG: Use metric random seed in v3 examples BUG: Prefer setting seed at algorithm in "v4" tests. Francois Budin (3): ENH: Update BridgeNumPy to latest version on 2017.01.08 to address ITK-3511 BUG: Extra \$ in doxygen comment BUG: Binary include directory added only if enabled shared Jon Haitz Legarreta (2): DOC: Document itkLabelOverlapMeasuresImageFilter methods. DOC: Fix ITKImageNoise filters' doc TeX errors. Matthew McCormick (1): BUG: Remove invalid ImageRegistration4Test.png.sha512 Max Smolens (1): DOC: Fix itkUnsharpMaskImageFilter documentation typos Simon Rit (1): BUG: ITK-based software was crasing when thread creation failed Changes from v4.10.0 to v4.11rc01 ------------------------------------------------ Bill Lorensen (4): COMP: Restore support for clang 3.0 compiler COMP: Consistent use of ModifiedTimeType ENH: Bump WikiExamples remote module version ENH: Bump WikiExamples version Bradley Lowekamp (57): ENH: Add registered TrasformIO's to exception ENH: Use template or constant for loop stop condition ENH: Updating SWIG version to 3.0.9 COMP: Address VS9 ambiguous std::abs call in Haung calculator COMP: Fix undefined NumericTraits::Zero and One errors with mingw64 BUG: Fix segfault if ~CleanUpObjectFactory called multiple times BUG: Address itkHDF5ImageIO test failures for mingw64 BUG: demonstrate dynamic_cast failure when reading transforms BUG: Address itkHDF5ImageIO test failures for mingw64 ENH: Updating SWIG version to 3.0.10 ENH: Enable CMP0063 New behavior COMP: Enable hidden visibility property with vxl static libraries COMP: Enable hidden visibility property with HDF5 static libraries COMP: Enable hidden visibility property with HDF5 static libraries BUG: Match Add2 function to AddImageFilter documentation ENH: Improve support for std::complex with PowImageFilter ENH: Explicitly mark required files for dependent tests COMP: Bypass XCode 7.3,8 internal compilation error COMP: Address CMake configuration error with itkJPEG2000Test03 property BUG: Correct test's REQUIRED_FILES to only the input. ENH: move HessianToObjectnessMeasure filter out of Review ENH: Separate TransformFactory class into separate module DOC: Add links between similar label to rgb filters ENH: Separate data from function calls COMP: Fix changed Graft method ENH: Reduce template dependencies on CalculateRotationMatrix ENH: Add Functor Accessors to LabelMapToRGB filter BUG: Enable VirtualDomain and FixedTransform in RegMethv4 BUG: Use BSpline Order 3 for 2D in transform factory. ENH: Add spline order to BSplineTransform's string id ENH: Adding initial CircleCi configuration file COMP: Fix float to unsigned integer conversion warnings BUG: Include installed modules in ITK_MODULES_ENABLED COMP: Address CMake error that ITKGPUCommon is not in export COMP: Address wrong library types with VS and shared libraries BUG: Ensure CreateImageIO is concurrent thread safe ENH: Mark HDF5 CMake options as internal COMP: Add template export declaration for ParametricPath COMP: Correct TEMPLATE_EXPLICIT definition in Path module ENH: Factor out common code in the TrasformFactoryBase registration ENH: Add CMake variable for max transform dimension, defaults 4 ENH: Create CMake module to check for private RTTI compatibility ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT BUG: Add explicit instantiate for ObjectToObjectOptimizerBase COMP: Use add_definitions for CMake 2.8.9 compatibility COMP: Add warning suppression for distcc warning ENH: Explicitly instantiate the optimizer base over float BUG: Use IsLinear to check if transform is "affine" ENH: Remove unneeded includes of random iterator header ENH: Improve thread-safety for Generator, and unique New sequence ENH: Do not use global random generator BUG: Update v3 registration metrics to use local seed ENH: Prefer setting local seed over global in tests. ENH: Update SWIG to latest 3.0.11 release BUG: relax testing parameters for v3 translation registration BUG: Restore baseline for debug registration Caspar Goch (2): BUG: Use printable type for RGBA pixel ostream for ITK-3501 STYLE: Remove extra space for ITK-3501 Christina Rossmanith (1): DOC: Added more details to the class Doxygen documentation. Davis Vigneault (2): COMP: VCL_DEFINE_SPECIALIZATION not defined ENH: Add remote module DVMeshNoise D?enan Zuki? (27): BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) ENH: Adding MultipleImageIterator as a remote module COMP: enables TBB 4.4 back-end for VTK7's SMP COMP: enabling position independent code flag for FFTW ENH: adding configuration file for code reformatting tool clang-format ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 COMP: Fixing -fPIC flag passing with Ninja build system ENH: Adding RLEImage as a remote module ENH: Updating uncrustify configuration to current git version STYLE: better compliance with ITK style STYLE: A new option in uncrustify, updating the config file accordingly ENH: Adding MorphologicalContourInterpolation as a remote module ENH: improving documentation BUG: fixing buffer growing endlessly, as reported by Timothee Evain BUG: fixing buffer growing endlessly, as reported by Timothee Evain STYLE: default uncrustify configuration file is less aggressive COMP: Fixing warning COMP: VS15 compiler fix BUG: casting -9 to unsigned produced unwanted result BUG: Ensuring consistency between debug and release COMP: Updating LesionSizingToolkit after some recent compile fixes COMP: respect option METAIO_USE_NAMESPACE ENH: updating version of AnisotropicDiffusionLBR ENH: adding UnsharpMaskingImageFilter COMP: explicitly cast to output type BUG: double call to update would cause empty output image ENH: Updating RLEImage remote module. Change-log: Eugene Prilepin (4): ENH: Add the "ITK_USE_GPU" to ITK Config BUG: Fix API for set/get "LaplacianImageFilter" object ENH: Add support of images types with the 'CovariantVector' pixel type ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap Francois Budin (52): ENH: Adding GetArrayFromImage in python itk namespace ENH: Adding GetImageFromArray in python itk namespace ENH: *_WRAP_* variable per external module BUG: ImportImageFilter not responsible of memory management ENH: New remote module GenericLabelInterpolator DOC: SetNumberOfOutputs had wrong comment BUG: lazyAttributes dictionary keys could be over-ridden BUG: lazyAttributes dictionary keys could be over-ridden BUG: Fix recent update of HDF5 (1.8.17) ENH: Update SCIFIO to latest version on 08/23/2016 ENH: Addition of the remote module FixedPointInverseDisplacementField ENH: Update SCIFIO to latest version on 08/29/2016 BUG: Path to commit was relative instead of absolute ENH: Path to SetupForDevelopment is relative, not absolute BUG: LSMImageIO write function was not checking image dimension BUG: LSMImageIO was not checking correctly image dimension BUG: Missing associated test data BUG: Missing associated test data ENH: Bump CMakeLists.txt version to 4.10.1. BUG: Quotes are not escaped in configured cmake file ENH: Improving API of Graft() in itk::Image ENH: Updating ITKGenericLabelInterpolator remote module ENH: Update ITKIOTransformDCMTK remote module BUG: Factory registration should depend on ITK_BUILD_SHARED COMP: Updating DCMTK compilation for Ninja ENH: Update version of DCMTK to 3.6.1_20121012 ENH: Update SCIFIO to latest version on 10/25/2016 BUG: Swig and PCRE do not support space in installation paths BUG: exit() call from within piped commands was not exiting the script BUG: Typo in folder creation command ENH: Only display message for transform registered multiple times in debug ENH: Image spacing must be positive BUG: Supported extensions by PNG IO were not added in constructor. DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. ENH: Update SCIFIO to lastest (2016.12.01) ENH: FixedPointInverseDisplacementField moved to InsightSoftwareConsortium COMP: Remove compilation warnings ENH: Improved support of ccache and distcc BUG: GPUImage regression due to API change. ENH: Update Bridge Numpy (2016.12.05) ENH: Update VariationalRegistration to remove warnings during compilation ENH: FindPythonLibs does not support both debug and release python libraries ENH: Update VariationalRegistration BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of itk::ImageBase BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper BUG: Missing ITK_TEMPLATE_EXPORT in templated class BUG: Remove linkage warnings on MacOS BUG: HDF5 CMake installation directory variable had not been updated BUG: Missing include header in AnisotropicDiffusionBLR remote module hxx files COMP: Silencing unused variable warning in itkTimeStamp STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt COMP: OS*Barrier functions are deprecated on MacOS 10.12 GCC-XML Upstream (1): ENH: pygccxml v1.8.0 (reduced) Gert Wollny (1): BUG: Relax vnl_complex floating point comparisons for i386 Gilles Filippini (1): BUG: Use NATIVE_HBOOL for encoding HDF5 types. HDF Group (1): ENH: hdf5 1.8.17-r30218 (reduced) Hans Johnson (23): COMP: Use cmake WriteCompilerDetectionHeader ENH: Use itk_compiler_detection versions COMP: Need ITK_NOEXCEPT_OR_THROW macro. COMP: Provide consistent granular C++11 support STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT STYLE: Prefer to use consistent definitions COMP: Improve robustness of identifying the compiler standard used BUG: try_compile for AlignAs were always failing STYLE: Provide a well documented macro for repeated code STYLE: Delete functions in consistent way COMP: GPU baseclass ivars need to be protected COMP: Remove unnecessary circular dependancy COMP: Add long long usage for HDF5 COMP: Add long long usage for HDF5 STYLE: Prefer static small array to dynamic array BUG: Confusing interface for FFTW wisdom files STYLE: Output dimension from OutputImageType STYLE: Code review style cleanups STYLE: Prefer to use ITK AssertOrThrow macros ENH: Add OverrideBoundaryCondition logic ENH: Provide mechanism for enhanced NIFTI support BUG: Use NIFTI sform/qform conventions correctly ENH: Remove ambiguity about sform/qform Hastings Greer (8): BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically BUG: make itkTriangleHelper instantiable to ease wrapping BUG: remove lsqr because of license issues ITK 1160 BUG: make itkTriangleHelper instantiable to ease wrapping BUG: initialize X to zero in lsmr Solve BUG: Labled Point Set Registration: test multiple labels BUG: Fix python wrapping of Cuberille remote module BUG: Add test demonstrating Python global timestamp issue Jean-Christophe Fillion-Robin (5): STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393 STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 STYLE: Update MeshIO factories to use RegisterFactoryInternal. See #3393 STYLE: MeshIO: Move MeshFileWriterException into its own file. See #3393 STYLE: MeshIO: Remove unused include from headers. See #3393 Johan Andruejol (3): ENH: Add missing itkKernelFunctionBase wrapping ENH: Add PrincipalComponentsAnalysis remote module COMP: Override cannot be used with inline Jon Haitz Legarreta (216): ENH: Improve itkFlatStructutingElement coverage. ENH: Improve itkPathToImageFilter class coverage. ENH: Improve itkIsolatedWatershedImageFilter coverage. ENH: Improve itkLogSigmoidTransferFunction coverage. STYLE: Improve itkBSplineTransform doc style. ENH: Improve GaborKernelFunctionCoverage. PERF: Remove duplicate itkMath include STYLE: Move the PrintSelf method to the end STYLE: Improve the itkScalarToRGBColormapImageFilter style. STYLE: Delete duplicate method documentation STYLE: Remove method documentation from implementation file STYLE: Improve GACLevelSet classes' style STYLE: Improve test style ENH: Improve itkGaussianDerivativeImageFilter coverage. ENH: Improve the itkScalarToRGBColormapImageFilter coverage STYLE: Improve itkScalarToRGBColormap test style ENH: Improve GACLSImageFilter classes' coverage STYLE: Improve comment style in GACLS tests ENH: Improve itkImportImageFilter coverage ENH: Improve itkVideoFileReader coverage ENH: Improve itkVideoFileWriter coverage STYLE: Improve the itkVideoFileWriter style. STYLE: Imrpove itkVideoFileReader style. ENH: Improve the itkBSplineControlPointImageFunction coverage STYLE: Improve the itkIntensityWindowingImageFilter style STYLE: Improve the itkIntensityWindowingImageFilter test style ENH: Improve ImageToSpatialObjectRegistrationMethod coverage STYLE: Improve test style ENH: Improve MaskNeighborhoodOperatorImageFilter coverage ENH: Improve itkMeshFileWriter coverage ENH: Improve RescaleIntensityImageFilter coverage. ENH: Improve itkClampImageFilter coverage. BUG: Fix ivar type casting in PrintSelf. STYLE: Improve MRIBiasFieldCorrectionFilter style. ENH: Improve MRIBiasFieldCorrectionFilter coverage. ENH: Improve itkIntensityWindowingImageFilter coverage BUG: Fix Run-time type information in CSV module classes. ENH: Improve the itkHistogram class code coverage. DOC: Fix documentation typo. STYLE: Improve the ImproveRescaleIntensityImageFilter style. PERF: Make the itkVideoFileReader ivars private PERF: Make itkVideoFileWriter ivars private ENH: Improve coverage for itk::OrientImageFilter. STYLE: Improve itk::OrientImageFilter class style. ENH: Improve itkCSVNumericObjectFileWriter coverage. ENH: Add missing standard class typdefs. ENH: Improve itkVoronoiSegmentationImageFilter coverage. ENH: Improve itkVoronoiSegmentationImageFilter style. STYLE: Improve the MalahanobisDistanceThresholdImageFunction style. ENH: Improve coverage for itkMalahanobisDistanceThreshold. ENH: Improve itk::MinimumMaximumImageCalculator coverage. ENH: Improve itkMinimumMaximumImageCalculator style. BUG: Fix type mismatch in test. STYLE: Improve itkPolylineMaskImagefilter style. ENH: Improve itkPolylineMaskImageFilter coverage. ENH: Improve itkFileListVideoStyle. ENH: Improve itkLandmarkBasedTransformInitializer coverage. ENH: Add baseline image to itkPolylineMaskImageFilter test. ENH: Improve coverage for itkBSplineTransformInitializer. STYLE: Improve itkBSplineTransformInitializer doc style. ENH: Enhance itkBSplineTransformInitializer implementation. DOC: Fix typo in method documentation. ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. STYLE: Improve the itkSimpleContourExtractorImageFilter style. ENH: Exercise the class' Get methods. ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. ENH: Improve style for itkThresholdLabelerImageFilter. ENH: Improve itkThresholdLabelerImageFilter coverage. ENH: Get internal ImageIO via a const macro. ENH: Improve the itkSimpleContourExtractorImageFilter coverage. STYLE: Improve the itkMetaArray class style. ENH: Improve MetaArrayReader/Writer coverages. ENH: Improve the itkCovarianceImageFunction style. STYLE: Improve itkVoronoiDiagram2DGenerator style. ENH: Improve VoronoiDiagram2DGenerator coverage. STYLE: Improve the itkBayesianClassifierImageFilter style. STYLE: Improve the itkMetaArrayWriter style. ENH: Improve itkCovarianteImageFunction coverage. COMP: Fix signed/unsigned int comparison warning. DOC: Improve itkGrayscaleDilateImageFilter documentation. DOC: Improve documentation for itkGrayscaleErodeImageFilter. DOC: Improve ConfigureHistogram method documentation. STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. BUG: Fix Superclass name in RTTI. STYLE: Improve itkGaussianInterpolateImageFunction style. ENH: Improve coverage for itkGaussianInterpolateImageFunction. ENH: Improve itkBayesianClassifierImageFilter coverage. ENH: Add itkBSplineControlPointImageFilter RTTI. STYLE: Improve itkBSplinecontrolPointImageFilter style. ENH: Improve itkBSplineControlPointImageFilter coverage. ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4. STYLE: Improve the class implementation file style. STYLE: Improve the itkResampleImageFilter style. DOC: Fix typo in GetMTime method doc. STYLE: Remove out-of-body implementation doc ENH: Improve itkResampleImageFilter coverage. ENH: Improve itkAbsImageAdaptor and Filter coverage. BUG: Fix itkLSMImageIO class' Superclass name. ENH: Improve the itkInterpolateImagePointsFilter coverage. ENH: Improve itkPowImageFilter coverage. BUG: Fix ConvolutionImageFilter RTTI. STYLE: Use initialization lists. STYLE: Improve BinaryFunctorImageFilter style. ENH: Improve itkMinimumImageFilter code coverage. BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. ENH: Improve MaximumImageFilter coverage. BUG: Fix conversion to PixelType conversion. COMP: Fix double to unsigned char conversion warning. ENH: Improve coverage for itkNormalizeToConstantImageFilter. BUG: Fix itkSquaredDifferenceErrorFunction RTTI. ENH: Improve itkMeanImageFunctionCoverage. ENH: Improve itkSquareImageFilter coverage. STYLE: Improve the itkSquaredDifferenceErrorFunction style. STYLE: Enhance style for itkNormalizeToConstantImageFilter. STYLE: Improve itkMeanImageFunction style. ENH: Remove unnecesary call to filter print. ENH: Improve itkRegionOfInterestImageFilter coverage. STYLE: Improve itkRegionOfInterestImageFilter style. STYLE: Improve itkPasteImageFilter style. STYLE: Improve itkJoinSeriesImageFilter style. BUG: Fix itkPadLabelMapFilter RTTI Superclass. COMP: Address std::cout.precision conversion warning. ENH: Improve itkBayesianClassifiertImageFilter coverage. ENH: Improve itkPadLabelMapFilter coverage. ENH: Improve itkJoinSeriesImageFilter coverage. ENH: Improve the itkPasteImageFilter coverage. ENH: Improve MeanImageFilter coverage. COMP: Address std::cout.precision conversion warning. ENH: Improve TernaryMagnitudeImageFilter coverage. ENH: Improve FFTConvolutionImageFilter coverage. DOC: Fix class documentation in ternary magnitude filters. ENH: Improve ConstrainedValueDifferenceImageFilter coverage. ENH: Improve AndImageFilter coverage. ENH: Add baseline test to itkTernaryMagnitudeImageFilter. ENH: Use MD5 comparison framework in baseline test. ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. STYLE: Improve the itkVectorRescaleIntensityImageFilter style. ENH: Print missing ivar in filter PrintSelf method. ENH: Improve itkComplexToImaginaryFilter coverage. ENH: Improve itkComplexToPhaseImageFilter coverage. ENH: Improve itkComplexToModulusImageFilter coverage. ENH: Improve itkComplexToRealImageFilter coverage. ENH: Improve itkVectorResampleImageFilter coverage. ENH: Add GetTransform method. ENH: Improve itkConstrainedValueAdditionImageFilter coverage. ENH: Improve itkModulusImageFilter coverage. ENH: Improve itkLog10ImageFilter coverage. ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. ENH: Improve itkLogImageFilter coverage. ENH: Improve itkInvertIntensityImageFilter coverage. STYLE: Improve itkInvertIntensityImageFilter style. DOC: Add missing doc to itkInvertIntensityImageFilter. STYLE: Improve itkIntensityWindowingImageFilter style. STYLE: Use initialization lists. ENH: Improve itkIntensityWindowingImageFilter coverage. ENH: Improve itkNaryMaximumImageFilter coverage. COMP: Fix std::precision type casting warning. ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod style. ENH: Remove SmartPointers being explicitly initialized to null. STYLE: Improve the itkPointSetToImageRegistrationMethod style. ENH: Improve itkPointSetToImageRegistration coverage. STYLE: Change the name of the itkPointSetToImageRegistrationMethod test. STYLE: Improve itkVectorResampleImageFilter style. STYLE: Improve the itkAntiAliasBinaryImageFilter style. ENH: Improve trigonometric function filters' coverage. STYLE: Remove test names from std::out messages. ENH: Improve Boolean Algebra ImageFilters coverage. STYLE: Improve the EuclideanDistancePointMetric style. ENH: Improve itkSigmoidImageFilter coverage. STYLE: Improve itkCropImageFilter style. ENH: Improve itkCropImageFilter coverage. ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. ENH: Improve itkRescaleIntensityImageFilter coverage. ENH: Improve the itkMatrixSelectionImageFilter coverage. ENH: Improve itkTanImageFilter and Adaptor coverage. ENH: Increase itkSqrtImageFilter and Adaptor coverage. ENH: Increase itkTernaryOperatorImageFilter coverage. ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. STYLE: Improve itkScalarImagekmeansImageFilter style. STYLE: Conform to TEST_SET_GET_VALUE definition. BUG: Fix uninitialized variable due to dynamic analysis defect. BUG: Fix uninitialized variable defect reported by valgrind. ENH: Improve the itkPointSetToPointSetRegistrationTest. ENH: Improve the itkPointSetToImageRegistrationTest. ENH: Increas BinaryMagnitudeImageFilter coverage. STYLE: Remove test name from std output. ENH: Increase MagnitudeImageFilter coverage. BUG: Fix uninitialized variable defect reported by valgrind. BUG: Fix Superclass name in RTTI. STYLE: Improve itkFrustumSpatialFunction style. STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction style. BUG: Fix Superclass template argument list. STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. STYLE: Improve the itkCheckerBoardImageFilter class style. ENH: Improve the itk::LabelVotingImageFilter coverage. ENH: Improve itkCheckerBoardImageFilter coverage. STYLE: Improve itk::LabelVotingImageFilter style. STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. ENH: Add test for itk::FrustumSpatialFunction class. ENH: Improve itkConnectedThresholdImageFilter coverage. STYLE: Improve itkConnectedThresholdImageFilter style. BUG: Fix FrustumSpatialFunction internal precision conversion. COMP: Fix implicit conversion warning. STYLE: Improve itkThresholdImageFilter style. ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. BUG: Fix Superclass template argument list. ENH: Improve itkUnsharpMaskingImageFilter implementation. ENH: Improve the itkUnsharpMaskingImageFilter coverage. ENH: Fix UnsharpMaskingImageFilter test inconsistencies. BUG: Add missing itkTypeMacro. DOC: Document the member variables. BUG: Fix the itkImageSource RTTI class name, STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style. ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. STYLE: Improve itkLabelOverlapMeasurementImageFilter style. KWSys Robot (6): KWSys 2016-06-30 (96f06c8e) KWSys 2016-10-23 (b630d2f5) KWSys 2016-11-03 (37306a1c) KWSys 2016-11-08 (2b3e2b1c) KWSys 2016-11-09 (18c65411) KWSys 2016-11-21 (cb55cf5a) Maeliss Jallais (1): BUG: Add unsigned and signed short to the wrapping of vnl_matrix Matthew McCormick (85): PERF: Simplify HilbertPath numberOfPathVertices computation. BUG: CID 1355469 NNetClassifierTest4 unintended integer division. BUG: Update Cuberille Remote for version check fix. ENH: Bump ITK version to 4.11.0. BUG: Fix HDF5ImageIO type information. BUG: Fix H5File memory leak in HDF5ImageIO. DOC: Collect Francois Budin's contributions in .mailmap BUG: Limit WRAP_ITK_MODULES when building externally STYLE: Improvements to ResourceProbe report output. ENH: Add a useTabs argument to ResourceProbe::Report. ENH: Add standard error measure to the ResourceProbe ENH: Add itk_python_add_test function. BUG: Remove VNL file from subtree merge. COMP: Fix wrapping with a space in the Python include path BUG: Fix PermuteAxesImageFilter pipeline method visibility BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter BUG: ResampleImageFilter honor isInside output of the transform method COMP: Avoid recursive include of itkMath.h COMP: Fix VXL header installation locations BUG: ClampImageFilterTest for older GCC, InPlaceOn DOC: Add CONTRIBUTING.md file to the top level. COMP: Update VariationalRegistration to address Doxygen warnings BUG: Compiler detections file installed into ITK build tree location COMP: Do not use string(TIMESTAMP. COMP: Remove HDF5 -std=c99 for C++ files BUG: Do not build HDF5 static library with a shared build ENH: Add PerformanceBenchmarking Remote Module COMP: Remove duplicate wrappings for ResampleImageFilter BUG: Put Python test output files in the build tree BUG: Improve HDF5ImageIO::CloseDataSet name COMP: Use add_python_test PythonLazyLoadingImage COMP: Address missing override it itkFactoryTestLib.cxx BUG: Index,Size,Offset constructors present in Python with C++11 COMP: Address missing override it itkFactoryTestLib.cxx BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT ENH: Bump SetupForDevelopment version BUG: Add missing ZLib deflate support to HDF5 BUG: Address memory leak, remove NumPy build dep in BridgeNumPy COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include ITK_WRAP_IMAGE_DIMS BUG: RichardsonLucyDeconvolutionImageFilter with non-null input Image Origin BUG: Fix inconsistent Twister start with Initialize(seed) and SetSeed(seed) BUG: Do not hard code CMake scripts in HDF5 COMP: Workaround Emscripten ITKCommon test build failure COMP: Do embed fancy HDF5 libsettings with Emscripten COMP: Add missing H5T_patch_vlen_file declaration ENH: Bump CastXML to 2016-10-11 master. COMP: Workaround Emscripten ITKCommon test build failure BUG: Swap CastXML hashes for Mac OSX and Windows ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 COMP: Fix VNL tests when cross-compiling ENH: ExternalData multi-algorithm support ENH: ExternalData support for data.kitware.com BUG: Install missing H5pubconf.h BUG: Use SpacePrecisionType in TileImageFilter BUG: Use internal ExternalData_Add_Target ENH: Run .sha512, .md5 simultaneous modification pre-commit check BUG: Correct CastXML Windows binary BUG: Support non-zero Index in LevelSetNeighborhoodExtractor ENH: Add ArchiveTestingDataOnGirder.py BUG: Correct AtanRegularizationHeavisideStepFunction derivative ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh BUG: Remove extra HessianToObjectness content links ENH: Wrap SpatialFunction float types with ITK_WRAP_float BUG: Bump PerformanceBenchmarking to 2016-11-04 BUG: itk_python_expression_add_test too many quotes. ENH: Wrap VectorImage with complex real pixel types ENH: Bump PerformanceBenchmarking to 2016-11-07 BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter ENH: Create itk_module_add_library macro BUG: Update computeCodeCoverageLocally.sh for KWStyle addition COMP: Install a newer version of CMake on CircleCI ENH: Use GitHub Pages as the first ExternalData resource ENH: Add tests to demonstrate OSX dynamic_cast failure BUG: Use random seed with for MersenneTwisterRandomVariateGenerator. BUG: Enable program global timestamp BUG: Set random number seed in Mattes metric test BUG: Notify builder that ITK_DYNAMIC_LOADING is required with wrapping BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON BUG: Set random number seed mutual information metric tests BUG: Wrap std::vector< itk.Point > BUG: Fix wrapping of LandmarkBasedTransformInitializer BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter DOC: Add D?enan Zuki? to .mailmap Max Smolens (4): COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field BUG: CID-1355438 QuadEdgeTest1 resource leaks COMP: CID-1355472 MIRegistrationFunction unused value COMP: Fix link errors for VNL template instantiations on Windows Mayeul Chassagnard (7): BUG: Test added and error fixed in HDF5ImageIO ENH: Update add_library TO itk_module_add_library COMP: Set Policy CMP0023 target_link_libraries for Modules/ThirdParty/VNLI... BUG: Add ITK_TEMPLATE_EXPORT to template classes BUG: Fix errors linked to dyn_cast merge BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes BUG: dash3win7 dashboard build error unresolved external symbol Michka Popoff (3): ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 ENH: Update igenerator.py for pygccxml v1.8.0 COMP: Use pygccxml's public API for apply definitions Pierre Barbier de Reuille (2): COMP: Fix function naming error when using FFTWD COMP: Fix function naming error when using FFTWD Sean McBride (1): COMP: Bypass HDF5 bugs under TSan Simon Rit (2): COMP: remove C++11 compiler warning for CUDA compilations COMP: remove C++11 compiler warning for CUDA compilations Somesh Kashyap (2): BUG: Override TransformCategoryType for AzimuthElevationToCartesianTransform BUG: -Added test case for itkAzimuthElevationToCartesianTransform Sumedha Singla (1): ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote module Taylor Braun-Jones (4): COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is enabled COMP: Fix truncation from double to float warning DOC: Fix incorrect itkFactorylessNewMacro documentation COMP: Only include the headers for required OpenCV modules Thien Nguyen (1): PERF: SmapsFileParser unnecessary dynamic_cast VXL Maintainers (4): VNL 2016-05-15 (14f97ab4) VNL 2016-06-22 (23a93adb) VNL 2016-06-29 (d62a2d70) VNL 2016-07-06 (acfa62cc) Vladimir S. FONOV (1): COMP: Build against GCC 5.3.1 Zach Williamson (2): ENH: Update Remote Module Tags BUG: Fix Python Wrappings in C++11 Ziv Yaniv (1): BUG: Metric sampling percentage accepted values outside (0.0, 1.0]. ITK Sphinx Examples Changes ------------------------------------------- Matt McCormick (6): BUG: Use GDCM ITK module name ENH: Rename ReadDICOMSeriesAndWrite3DImage BUG: Add tests for ReadDICOMSeriesAndWrite3DImage ENH: Bump ITK Superbuild version to 2016-09-20 master ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage ENH: Add Python version of CreateAnRGBImage Michka Popoff (5): ENH: Use same Python interpreter as ITK for wrapping tests BUG: Fix ResampleAnImage example (Python3) ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRegionOfAnImage ENH: Add 7 Python examples to Core/Common ENH: Add BoundingBoxOfAPointSet Python example ITK Software Guide Changes ---------------------------------------- Matt McCormick (8): DOC: Move the location for obtaining the software DOC: Remove reference to ITKApps ENH: Bump ITK ExternalProject version to 2016-11-02 master DOC: Document the ITK module registry ENH: Bump ITK ExternalProject version to v4.11rc01 master DOC: Update CMake hyperlinks DOC: Update minimum required CMake version to 2.8.9 DOC: Add section on static and shared libraries. From dzenanz at gmail.com Sun Jan 29 16:41:08 2017 From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=) Date: Sun, 29 Jan 2017 16:41:08 -0500 Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.11 Release Candidate 2 is ready for testing! In-Reply-To: References: Message-ID: RC3 got released on Friday, and it builds ITK without issue! On Thu, Jan 19, 2017 at 5:00 PM, Taylor Braun-Jones wrote: > Cool, thanks D?enan! > > On Thu, Jan 19, 2017 at 2:14 PM, D?enan Zuki? wrote: > >> ... and more: >> >> Additionally, we've added ITK and VTK libraries from GitHub to our daily >> compiler testing and validations. So in short, from now on we will be >> releasing MSVC compiler versions to the public where live GitHub ITK and >> VTK sources will build clean. That's a promise :). >> >> Thanks, >> Ulzii Luvsanbat >> Visual C++ Team >> >> On Thu, Jan 19, 2017 at 1:21 PM, D?enan Zuki? wrote: >> >>> A new reply in that bug report: >>> >>> Hi, there's a lag when we, the compiler team, tags the bug resolved and >>> the fix actually gets included in the VS release. We apologize for that, >>> it's just the way how engineering works to get everything ready in VS to be >>> shipped. This specific bug has been fixed for the VS2017 RC3 release, which >>> is only days away from shipping. >>> >>> If you'd you like to validate your project before that with a private >>> Nuget package of the compiler toolset, then please send me an email here >>> (batul at Microsoft dot com), and I can get you going. >>> >>> On Thu, Jan 19, 2017 at 12:46 PM, D?enan Zuki? >>> wrote: >>> >>>> Hi Taylor, >>>> >>>> I submitted a bug >>>> >>>> report to Microsoft about it, and somebody said they will add ITK to their >>>> compiler test suite. Also, that crashing bug was supposedly fixed for >>>> "final release". >>>> >>>> Regards, >>>> D?enan >>>> >>>> On Thu, Jan 19, 2017 at 12:18 PM, Taylor Braun-Jones < >>>> taylor at braun-jones.org> wrote: >>>> >>>>> Any chance the 4.11 release could have at least some preliminary >>>>> support for VS2017? Right now it crashes the compiler: >>>>> >>>>> C:\src\itk\modules\core\common\include\itkPromoteType.h(97): fatal >>>>> error C1001: An internal error has occurred in the compiler. >>>>> (compiler file 'msc1.cpp', line 1469) >>>>> To work around this problem, try simplifying or changing the program >>>>> near the locations listed above. >>>>> Please choose the Technical Support command on the Visual C++ >>>>> Help menu, or open the Technical Support help file for more >>>>> information >>>>> Internal Compiler Error in C:\PROGRA~2\MIB055~1\2017\COMM >>>>> UN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe. You will be >>>>> prompted to send an error report to Microsoft later. >>>>> INTERNAL COMPILER ERROR in 'C:\PROGRA~2\MIB055~1\2017\COM >>>>> MUN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe' >>>>> Please choose the Technical Support command on the Visual C++ >>>>> Help menu, or open the Technical Support help file for more >>>>> information >>>>> >>>>> Taylor >>>>> >>>>> On Mon, Jan 16, 2017 at 4:18 PM, Matt McCormick < >>>>> matt.mccormick at kitware.com> wrote: >>>>> >>>>>> On behalf of the Insight Toolkit community, we are proud to announce >>>>>> that ITK 4.11 release candidate 2 has been tagged and is available for >>>>>> testing! Please take this opportunity to test the new features in the >>>>>> release candidate. >>>>>> >>>>>> >>>>>> To obtain the source code, use the links: >>>>>> >>>>>> >>>>>> https://github.com/Kitware/ITK/archive/v4.11rc02.zip >>>>>> https://github.com/Kitware/ITK/archive/v4.11rc02.tar.gz >>>>>> >>>>>> or >>>>>> >>>>>> git clone https://itk.org/ITK.git >>>>>> cd ITK >>>>>> git checkout -q --detach v4.11rc02 >>>>>> >>>>>> For more details, please see the Git documentation [1]. >>>>>> >>>>>> >>>>>> A few selected highlights for this release: >>>>>> >>>>>> - Remote Modules were added to: perturb mesh vertices with additive >>>>>> gaussian noise, accurately benchmark computational performance, >>>>>> perform principal components analysis of scalar, vector, and mesh >>>>>> vertex data, create a run-length encoded memory compression scheme for >>>>>> itk::Image, run N-D morphological contour interpolation, interpolate >>>>>> multi-label images, iterate over multiple images simultaneously, and >>>>>> compute inverse displacement fields. >>>>>> - NumPy bridge support is now enabled by default with NumPy array >>>>>> views of multi-component images and VNL vectors and matrices. >>>>>> - Internal HDF5 was updated to the latest upstream version along >>>>>> with a number of other third-party libraries. >>>>>> >>>>>> >>>>>> This release introduces a new template class export specification >>>>>> macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated >>>>>> classes to address failing dynamic_cast's and exception catching >>>>>> across binaries on Mac OSX. >>>>>> >>>>>> Bugs were addressed and improvements were made to how the >>>>>> pseudo-random number generator is used. Tests that rely on the random >>>>>> number generator should explicitly set the global seed at start: >>>>>> >>>>>> itk::Statistics::MersenneTwisterRandomVariateGenerator::GetI >>>>>> nstance()->SetSeed( >>>>>> 121212 ); >>>>>> >>>>>> To improve randomness, new instances of the generator start from a >>>>>> different seed; some minor differences in the output of algorithms >>>>>> that uses the generator, like mutual information metrics, should be >>>>>> expected. >>>>>> >>>>>> Additionally, output may change for registration with composite affine >>>>>> transforms; the v4 registration framework now uses corner sampling as >>>>>> opposed to random sampling to estimate their parameter scales. >>>>>> >>>>>> >>>>>> Please test the release candidate and share your experiences on the >>>>>> mailing list, issue tracker, and Gerrit Code Review. >>>>>> >>>>>> >>>>>> An Experimental build, which demonstrates how the test suite performs >>>>>> on your local build system, can be submitted to the dashboard [2] >>>>>> with: >>>>>> >>>>>> mkdir ../ITK-build >>>>>> cd ../ITK-build >>>>>> cmake ../ITK >>>>>> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit >>>>>> >>>>>> Visual Studio builds must also add ?-C Release? to the ctest command. >>>>>> >>>>>> Notify the mailing list if there are any unexpected failures. Testing >>>>>> your own applications against the RC is also appreciated. >>>>>> >>>>>> >>>>>> Congratulations to the 31 contributors to this release. We would >>>>>> especially like to recognize the new contributors: Hastings Greer, >>>>>> Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, >>>>>> Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss >>>>>> Jallais. >>>>>> >>>>>> >>>>>> The 4.11.0 final release is scheduled for January 23rd. >>>>>> >>>>>> >>>>>> [1] http://www.itk.org/Wiki/ITK/Git >>>>>> >>>>>> [2] http://open.cdash.org/index.php?project=Insight >>>>>> >>>>>> >>>>>> New Features >>>>>> ------------ >>>>>> >>>>>> * Wrapping Improvements >>>>>> - Python GetArrayFromImage() and GetImageFromArray() from >>>>>> ITKBridgeNumPy are directly accessible from the Python itk namespace. >>>>>> - The itk package loads much faster: individual modules are loaded >>>>>> only when required. >>>>>> - Conversion of ITK images from and to NumPy array using Bridge >>>>>> NumPy supports RGB, RGBA, and Vector images. >>>>>> - VNL vectors and VNL matrices can be converted from and to NumPy >>>>>> objects with respectively the new couple of functions >>>>>> GetArrayFromVnlVector()/GetVnlVectorFromArray() and >>>>>> GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() >>>>>> - The global timestamp is used across all ITK Python modules when >>>>>> built statically >>>>>> - Wrap additional classes such as KernelFunctionBase >>>>>> - itk_python_add_test CMake function added for Python script testing >>>>>> in ITK modules >>>>>> >>>>>> * New Remote Modules >>>>>> - DVMeshNoise >>>>>> - Perturbing mesh vertices with additive gaussian noise >>>>>> - http://hdl.handle.net/10380/3567 >>>>>> - PerformanceBenchmarking >>>>>> - Accurate benchmarking of computational performance >>>>>> - http://hdl.handle.net/10380/3557 >>>>>> - PrincipalComponentsAnalysis >>>>>> - Principal components analysis of scalar, vector, and mesh >>>>>> vertex data >>>>>> - http://hdl.handle.net/10380/3386 >>>>>> - RLEImage >>>>>> - Run-length encoded memory compression scheme for itk::Image >>>>>> - http://hdl.handle.net/10380/3562 >>>>>> - MorphologicalContourInterpolation >>>>>> - N-D morphological contour interpolation >>>>>> - http://hdl.handle.net/10380/3563 >>>>>> - GenericLabelInterpolator >>>>>> - A generic interpolator for multi-label images >>>>>> - http://hdl.handle.net/10380/3506 >>>>>> - MultipleImageIterator >>>>>> - Iterate over multiple images simultaneously >>>>>> - http://hdl.handle.net/10380/3455 >>>>>> - FixedPointInverseDisplacementField >>>>>> - Computes inverse displacement field >>>>>> - http://hdl.handle.net/10380/3222 >>>>>> >>>>>> * Core Improvements >>>>>> - New ITK_TEMPLATE_EXPORT for templated classes resolves >>>>>> cross-binary dynamic_cast on Mac OSX >>>>>> - New MersenneTwisterRandomVariateGenerator instances are >>>>>> initialized with different seeds >>>>>> - Use compiler feature detection in CMake for C++11 features, etc. >>>>>> - New CMake macro itk_module_add_library for creating libraries in >>>>>> ITK modules >>>>>> - Improved support for ccache and distcc with >>>>>> CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) >>>>>> - Support for .sha512 ExternalData content links >>>>>> - GitHub Pages and data.kitware.com ExternalData repositories added >>>>>> - GPGPU system support for C++11 >>>>>> - Support of new compilers: Visual Studio 15 and XCode 8.2.1 >>>>>> (clang-800.0.42.1) >>>>>> >>>>>> * Filtering Improvements >>>>>> - HessianToObjectnessMeasure moved out of the ITKReview module >>>>>> - New UnsharpMaskImageFilter for image edge enhancement >>>>>> >>>>>> * IO Improvements >>>>>> - TransformFactory class has been moved to a separate module >>>>>> - Spline order added to BSplineTransform identifier >>>>>> - Improved NIFTI orientation support >>>>>> >>>>>> * Documentation Improvements >>>>>> - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples >>>>>> >>>>>> * Third Party Library Updates >>>>>> - pygccxml updated to v1.8.0 >>>>>> - VNL updated to latest upstream (2016.07.06) >>>>>> - SWIG updated to v3.0.11 >>>>>> - KWSys updated to latest upstream (2016.11.21) >>>>>> - HDF5 updated to v1.8.17 >>>>>> - SCIFIO updated to latest upstream (2016.12.01) >>>>>> - DCMTK updated to 3.6.1_20121012 >>>>>> - CastXML to latest upstream (2016.01.28) >>>>>> >>>>>> * Improved Code Coverage -- we are at 85.44%! >>>>>> - Jon Haitz-Legarreta's extensive code coverage improvements >>>>>> - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ >>>>>> >>>>>> * *Lots* of important bug fixes >>>>>> >>>>>> * And much more! See details in the log below. >>>>>> >>>>>> >>>>>> Changes from v4.11rc01 to v4.11rc02 >>>>>> ----------------------------------- >>>>>> >>>>>> Bradley Lowekamp (5): >>>>>> BUG: Remove unused SimpleImageRegistrationTest baselines >>>>>> ENH: Expose GetNextSeed method in MersenneTwiseter Generator >>>>>> BUG: Add option for fixed seed or wall clock seed for sampling >>>>>> BUG: Use metric random seed in v3 examples >>>>>> BUG: Prefer setting seed at algorithm in "v4" tests. >>>>>> >>>>>> Francois Budin (3): >>>>>> ENH: Update BridgeNumPy to latest version on 2017.01.08 to >>>>>> address ITK-3511 >>>>>> BUG: Extra \$ in doxygen comment >>>>>> BUG: Binary include directory added only if enabled shared >>>>>> >>>>>> Jon Haitz Legarreta (2): >>>>>> DOC: Document itkLabelOverlapMeasuresImageFilter methods. >>>>>> DOC: Fix ITKImageNoise filters' doc TeX errors. >>>>>> >>>>>> Matthew McCormick (1): >>>>>> BUG: Remove invalid ImageRegistration4Test.png.sha512 >>>>>> >>>>>> Max Smolens (1): >>>>>> DOC: Fix itkUnsharpMaskImageFilter documentation typos >>>>>> >>>>>> Simon Rit (1): >>>>>> BUG: ITK-based software was crasing when thread creation failed >>>>>> >>>>>> >>>>>> Changes from v4.10.0 to v4.11rc01 >>>>>> --------------------------------- >>>>>> >>>>>> Bill Lorensen (4): >>>>>> COMP: Restore support for clang 3.0 compiler >>>>>> COMP: Consistent use of ModifiedTimeType >>>>>> ENH: Bump WikiExamples remote module version >>>>>> ENH: Bump WikiExamples version >>>>>> >>>>>> Bradley Lowekamp (57): >>>>>> ENH: Add registered TrasformIO's to exception >>>>>> ENH: Use template or constant for loop stop condition >>>>>> ENH: Updating SWIG version to 3.0.9 >>>>>> COMP: Address VS9 ambiguous std::abs call in Haung calculator >>>>>> COMP: Fix undefined NumericTraits::Zero and One errors with >>>>>> mingw64 >>>>>> BUG: Fix segfault if ~CleanUpObjectFactory called multiple times >>>>>> BUG: Address itkHDF5ImageIO test failures for mingw64 >>>>>> BUG: demonstrate dynamic_cast failure when reading transforms >>>>>> BUG: Address itkHDF5ImageIO test failures for mingw64 >>>>>> ENH: Updating SWIG version to 3.0.10 >>>>>> ENH: Enable CMP0063 New behavior >>>>>> COMP: Enable hidden visibility property with vxl static libraries >>>>>> COMP: Enable hidden visibility property with HDF5 static >>>>>> libraries >>>>>> COMP: Enable hidden visibility property with HDF5 static >>>>>> libraries >>>>>> BUG: Match Add2 function to AddImageFilter documentation >>>>>> ENH: Improve support for std::complex with PowImageFilter >>>>>> ENH: Explicitly mark required files for dependent tests >>>>>> COMP: Bypass XCode 7.3,8 internal compilation error >>>>>> COMP: Address CMake configuration error with itkJPEG2000Test03 >>>>>> property >>>>>> BUG: Correct test's REQUIRED_FILES to only the input. >>>>>> ENH: move HessianToObjectnessMeasure filter out of Review >>>>>> ENH: Separate TransformFactory class into separate module >>>>>> DOC: Add links between similar label to rgb filters >>>>>> ENH: Separate data from function calls >>>>>> COMP: Fix changed Graft method >>>>>> ENH: Reduce template dependencies on CalculateRotationMatrix >>>>>> ENH: Add Functor Accessors to LabelMapToRGB filter >>>>>> BUG: Enable VirtualDomain and FixedTransform in RegMethv4 >>>>>> BUG: Use BSpline Order 3 for 2D in transform factory. >>>>>> ENH: Add spline order to BSplineTransform's string id >>>>>> ENH: Adding initial CircleCi configuration file >>>>>> COMP: Fix float to unsigned integer conversion warnings >>>>>> BUG: Include installed modules in ITK_MODULES_ENABLED >>>>>> COMP: Address CMake error that ITKGPUCommon is not in export >>>>>> COMP: Address wrong library types with VS and shared libraries >>>>>> BUG: Ensure CreateImageIO is concurrent thread safe >>>>>> ENH: Mark HDF5 CMake options as internal >>>>>> COMP: Add template export declaration for ParametricPath >>>>>> COMP: Correct TEMPLATE_EXPLICIT definition in Path module >>>>>> ENH: Factor out common code in the TrasformFactoryBase >>>>>> registration >>>>>> ENH: Add CMake variable for max transform dimension, defaults 4 >>>>>> ENH: Create CMake module to check for private RTTI compatibility >>>>>> ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT >>>>>> COMP: Correct ifndef value to allow user defined >>>>>> ITK_TEMPLATE_EXPORT >>>>>> BUG: Add explicit instantiate for ObjectToObjectOptimizerBase >>>>>> COMP: Use add_definitions for CMake 2.8.9 compatibility >>>>>> COMP: Add warning suppression for distcc warning >>>>>> ENH: Explicitly instantiate the optimizer base over float >>>>>> BUG: Use IsLinear to check if transform is "affine" >>>>>> ENH: Remove unneeded includes of random iterator header >>>>>> ENH: Improve thread-safety for Generator, and unique New sequence >>>>>> ENH: Do not use global random generator >>>>>> BUG: Update v3 registration metrics to use local seed >>>>>> ENH: Prefer setting local seed over global in tests. >>>>>> ENH: Update SWIG to latest 3.0.11 release >>>>>> BUG: relax testing parameters for v3 translation registration >>>>>> BUG: Restore baseline for debug registration >>>>>> >>>>>> Caspar Goch (2): >>>>>> BUG: Use printable type for RGBA pixel ostream for ITK-3501 >>>>>> STYLE: Remove extra space for ITK-3501 >>>>>> >>>>>> Christina Rossmanith (1): >>>>>> DOC: Added more details to the class Doxygen documentation. >>>>>> >>>>>> Davis Vigneault (2): >>>>>> COMP: VCL_DEFINE_SPECIALIZATION not defined >>>>>> ENH: Add remote module DVMeshNoise >>>>>> >>>>>> D?enan Zuki? (27): >>>>>> BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) >>>>>> ENH: Adding MultipleImageIterator as a remote module >>>>>> COMP: enables TBB 4.4 back-end for VTK7's SMP >>>>>> COMP: enabling position independent code flag for FFTW >>>>>> ENH: adding configuration file for code reformatting tool >>>>>> clang-format >>>>>> ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 >>>>>> COMP: Fixing -fPIC flag passing with Ninja build system >>>>>> ENH: Adding RLEImage as a remote module >>>>>> ENH: Updating uncrustify configuration to current git version >>>>>> STYLE: better compliance with ITK style >>>>>> STYLE: A new option in uncrustify, updating the config file >>>>>> accordingly >>>>>> ENH: Adding MorphologicalContourInterpolation as a remote module >>>>>> ENH: improving documentation >>>>>> BUG: fixing buffer growing endlessly, as reported by Timothee >>>>>> Evain >>>>>> BUG: fixing buffer growing endlessly, as reported by Timothee >>>>>> Evain >>>>>> STYLE: default uncrustify configuration file is less aggressive >>>>>> COMP: Fixing warning >>>>>> COMP: VS15 compiler fix >>>>>> BUG: casting -9 to unsigned produced unwanted result >>>>>> BUG: Ensuring consistency between debug and release >>>>>> COMP: Updating LesionSizingToolkit after some recent compile >>>>>> fixes >>>>>> COMP: respect option METAIO_USE_NAMESPACE >>>>>> ENH: updating version of AnisotropicDiffusionLBR >>>>>> ENH: adding UnsharpMaskingImageFilter >>>>>> COMP: explicitly cast to output type >>>>>> BUG: double call to update would cause empty output image >>>>>> ENH: Updating RLEImage remote module. Change-log: >>>>>> >>>>>> Eugene Prilepin (4): >>>>>> ENH: Add the "ITK_USE_GPU" to ITK Config >>>>>> BUG: Fix API for set/get "LaplacianImageFilter" object >>>>>> ENH: Add support of images types with the 'CovariantVector' >>>>>> pixel type >>>>>> ENH: Add python test for the 'GradientVectorFlowImageFilter' >>>>>> wrap >>>>>> >>>>>> Francois Budin (52): >>>>>> ENH: Adding GetArrayFromImage in python itk namespace >>>>>> ENH: Adding GetImageFromArray in python itk namespace >>>>>> ENH: *_WRAP_* variable per external module >>>>>> BUG: ImportImageFilter not responsible of memory management >>>>>> ENH: New remote module GenericLabelInterpolator >>>>>> DOC: SetNumberOfOutputs had wrong comment >>>>>> BUG: lazyAttributes dictionary keys could be over-ridden >>>>>> BUG: lazyAttributes dictionary keys could be over-ridden >>>>>> BUG: Fix recent update of HDF5 (1.8.17) >>>>>> ENH: Update SCIFIO to latest version on 08/23/2016 >>>>>> ENH: Addition of the remote module FixedPointInverseDisplacementF >>>>>> ield >>>>>> ENH: Update SCIFIO to latest version on 08/29/2016 >>>>>> BUG: Path to commit was relative instead of absolute >>>>>> ENH: Path to SetupForDevelopment is relative, not absolute >>>>>> BUG: LSMImageIO write function was not checking image dimension >>>>>> BUG: LSMImageIO was not checking correctly image dimension >>>>>> BUG: Missing associated test data >>>>>> BUG: Missing associated test data >>>>>> ENH: Bump CMakeLists.txt version to 4.10.1. >>>>>> BUG: Quotes are not escaped in configured cmake file >>>>>> ENH: Improving API of Graft() in itk::Image >>>>>> ENH: Updating ITKGenericLabelInterpolator remote module >>>>>> ENH: Update ITKIOTransformDCMTK remote module >>>>>> BUG: Factory registration should depend on ITK_BUILD_SHARED >>>>>> COMP: Updating DCMTK compilation for Ninja >>>>>> ENH: Update version of DCMTK to 3.6.1_20121012 >>>>>> ENH: Update SCIFIO to latest version on 10/25/2016 >>>>>> BUG: Swig and PCRE do not support space in installation paths >>>>>> BUG: exit() call from within piped commands was not exiting the >>>>>> script >>>>>> BUG: Typo in folder creation command >>>>>> ENH: Only display message for transform registered multiple >>>>>> times in debug >>>>>> ENH: Image spacing must be positive >>>>>> BUG: Supported extensions by PNG IO were not added in >>>>>> constructor. >>>>>> DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. >>>>>> ENH: Update SCIFIO to lastest (2016.12.01) >>>>>> ENH: FixedPointInverseDisplacementField moved to >>>>>> InsightSoftwareConsortium >>>>>> COMP: Remove compilation warnings >>>>>> ENH: Improved support of ccache and distcc >>>>>> BUG: GPUImage regression due to API change. >>>>>> ENH: Update Bridge Numpy (2016.12.05) >>>>>> ENH: Update VariationalRegistration to remove warnings during >>>>>> compilation >>>>>> ENH: FindPythonLibs does not support both debug and release >>>>>> python libraries >>>>>> ENH: Update VariationalRegistration >>>>>> BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of >>>>>> itk::ImageBase >>>>>> BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper >>>>>> BUG: Missing ITK_TEMPLATE_EXPORT in templated class >>>>>> BUG: Remove linkage warnings on MacOS >>>>>> BUG: HDF5 CMake installation directory variable had not been >>>>>> updated >>>>>> BUG: Missing include header in AnisotropicDiffusionBLR remote >>>>>> module hxx files >>>>>> COMP: Silencing unused variable warning in itkTimeStamp >>>>>> STYLE: Improve style checking by using module >>>>>> ITKKWStyleOverwrite.txt >>>>>> COMP: OS*Barrier functions are deprecated on MacOS 10.12 >>>>>> >>>>>> GCC-XML Upstream (1): >>>>>> ENH: pygccxml v1.8.0 (reduced) >>>>>> >>>>>> Gert Wollny (1): >>>>>> BUG: Relax vnl_complex floating point comparisons for i386 >>>>>> >>>>>> Gilles Filippini (1): >>>>>> BUG: Use NATIVE_HBOOL for encoding HDF5 types. >>>>>> >>>>>> HDF Group (1): >>>>>> ENH: hdf5 1.8.17-r30218 (reduced) >>>>>> >>>>>> Hans Johnson (23): >>>>>> COMP: Use cmake WriteCompilerDetectionHeader >>>>>> ENH: Use itk_compiler_detection versions >>>>>> COMP: Need ITK_NOEXCEPT_OR_THROW macro. >>>>>> COMP: Provide consistent granular C++11 support >>>>>> STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT >>>>>> STYLE: Prefer to use consistent definitions >>>>>> COMP: Improve robustness of identifying the compiler standard >>>>>> used >>>>>> BUG: try_compile for AlignAs were always failing >>>>>> STYLE: Provide a well documented macro for repeated code >>>>>> STYLE: Delete functions in consistent way >>>>>> COMP: GPU baseclass ivars need to be protected >>>>>> COMP: Remove unnecessary circular dependancy >>>>>> COMP: Add long long usage for HDF5 >>>>>> COMP: Add long long usage for HDF5 >>>>>> STYLE: Prefer static small array to dynamic array >>>>>> BUG: Confusing interface for FFTW wisdom files >>>>>> STYLE: Output dimension from OutputImageType >>>>>> STYLE: Code review style cleanups >>>>>> STYLE: Prefer to use ITK AssertOrThrow macros >>>>>> ENH: Add OverrideBoundaryCondition logic >>>>>> ENH: Provide mechanism for enhanced NIFTI support >>>>>> BUG: Use NIFTI sform/qform conventions correctly >>>>>> ENH: Remove ambiguity about sform/qform >>>>>> >>>>>> Hastings Greer (8): >>>>>> BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically >>>>>> BUG: make itkTriangleHelper instantiable to ease wrapping >>>>>> BUG: remove lsqr because of license issues ITK 1160 >>>>>> BUG: make itkTriangleHelper instantiable to ease wrapping >>>>>> BUG: initialize X to zero in lsmr Solve >>>>>> BUG: Labled Point Set Registration: test multiple labels >>>>>> BUG: Fix python wrapping of Cuberille remote module >>>>>> BUG: Add test demonstrating Python global timestamp issue >>>>>> >>>>>> Jean-Christophe Fillion-Robin (5): >>>>>> STYLE: UseITK: Set ImageIO exceptions using new convention. See >>>>>> #3393 >>>>>> STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 >>>>>> STYLE: Update MeshIO factories to use RegisterFactoryInternal. >>>>>> See #3393 >>>>>> STYLE: MeshIO: Move MeshFileWriterException into its own file. >>>>>> See #3393 >>>>>> STYLE: MeshIO: Remove unused include from headers. See #3393 >>>>>> >>>>>> Johan Andruejol (3): >>>>>> ENH: Add missing itkKernelFunctionBase wrapping >>>>>> ENH: Add PrincipalComponentsAnalysis remote module >>>>>> COMP: Override cannot be used with inline >>>>>> >>>>>> Jon Haitz Legarreta (216): >>>>>> ENH: Improve itkFlatStructutingElement coverage. >>>>>> ENH: Improve itkPathToImageFilter class coverage. >>>>>> ENH: Improve itkIsolatedWatershedImageFilter coverage. >>>>>> ENH: Improve itkLogSigmoidTransferFunction coverage. >>>>>> STYLE: Improve itkBSplineTransform doc style. >>>>>> ENH: Improve GaborKernelFunctionCoverage. >>>>>> PERF: Remove duplicate itkMath include >>>>>> STYLE: Move the PrintSelf method to the end >>>>>> STYLE: Improve the itkScalarToRGBColormapImageFilter style. >>>>>> STYLE: Delete duplicate method documentation >>>>>> STYLE: Remove method documentation from implementation file >>>>>> STYLE: Improve GACLevelSet classes' style >>>>>> STYLE: Improve test style >>>>>> ENH: Improve itkGaussianDerivativeImageFilter coverage. >>>>>> ENH: Improve the itkScalarToRGBColormapImageFilter coverage >>>>>> STYLE: Improve itkScalarToRGBColormap test style >>>>>> ENH: Improve GACLSImageFilter classes' coverage >>>>>> STYLE: Improve comment style in GACLS tests >>>>>> ENH: Improve itkImportImageFilter coverage >>>>>> ENH: Improve itkVideoFileReader coverage >>>>>> ENH: Improve itkVideoFileWriter coverage >>>>>> STYLE: Improve the itkVideoFileWriter style. >>>>>> STYLE: Imrpove itkVideoFileReader style. >>>>>> ENH: Improve the itkBSplineControlPointImageFunction coverage >>>>>> STYLE: Improve the itkIntensityWindowingImageFilter style >>>>>> STYLE: Improve the itkIntensityWindowingImageFilter test style >>>>>> ENH: Improve ImageToSpatialObjectRegistrationMethod coverage >>>>>> STYLE: Improve test style >>>>>> ENH: Improve MaskNeighborhoodOperatorImageFilter coverage >>>>>> ENH: Improve itkMeshFileWriter coverage >>>>>> ENH: Improve RescaleIntensityImageFilter coverage. >>>>>> ENH: Improve itkClampImageFilter coverage. >>>>>> BUG: Fix ivar type casting in PrintSelf. >>>>>> STYLE: Improve MRIBiasFieldCorrectionFilter style. >>>>>> ENH: Improve MRIBiasFieldCorrectionFilter coverage. >>>>>> ENH: Improve itkIntensityWindowingImageFilter coverage >>>>>> BUG: Fix Run-time type information in CSV module classes. >>>>>> ENH: Improve the itkHistogram class code coverage. >>>>>> DOC: Fix documentation typo. >>>>>> STYLE: Improve the ImproveRescaleIntensityImageFilter style. >>>>>> PERF: Make the itkVideoFileReader ivars private >>>>>> PERF: Make itkVideoFileWriter ivars private >>>>>> ENH: Improve coverage for itk::OrientImageFilter. >>>>>> STYLE: Improve itk::OrientImageFilter class style. >>>>>> ENH: Improve itkCSVNumericObjectFileWriter coverage. >>>>>> ENH: Add missing standard class typdefs. >>>>>> ENH: Improve itkVoronoiSegmentationImageFilter coverage. >>>>>> ENH: Improve itkVoronoiSegmentationImageFilter style. >>>>>> STYLE: Improve the MalahanobisDistanceThresholdImageFunction >>>>>> style. >>>>>> ENH: Improve coverage for itkMalahanobisDistanceThreshold. >>>>>> ENH: Improve itk::MinimumMaximumImageCalculator coverage. >>>>>> ENH: Improve itkMinimumMaximumImageCalculator style. >>>>>> BUG: Fix type mismatch in test. >>>>>> STYLE: Improve itkPolylineMaskImagefilter style. >>>>>> ENH: Improve itkPolylineMaskImageFilter coverage. >>>>>> ENH: Improve itkFileListVideoStyle. >>>>>> ENH: Improve itkLandmarkBasedTransformInitializer coverage. >>>>>> ENH: Add baseline image to itkPolylineMaskImageFilter test. >>>>>> ENH: Improve coverage for itkBSplineTransformInitializer. >>>>>> STYLE: Improve itkBSplineTransformInitializer doc style. >>>>>> ENH: Enhance itkBSplineTransformInitializer implementation. >>>>>> DOC: Fix typo in method documentation. >>>>>> ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. >>>>>> STYLE: Improve the itkSimpleContourExtractorImageFilter style. >>>>>> ENH: Exercise the class' Get methods. >>>>>> ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. >>>>>> ENH: Improve style for itkThresholdLabelerImageFilter. >>>>>> ENH: Improve itkThresholdLabelerImageFilter coverage. >>>>>> ENH: Get internal ImageIO via a const macro. >>>>>> ENH: Improve the itkSimpleContourExtractorImageFilter coverage. >>>>>> STYLE: Improve the itkMetaArray class style. >>>>>> ENH: Improve MetaArrayReader/Writer coverages. >>>>>> ENH: Improve the itkCovarianceImageFunction style. >>>>>> STYLE: Improve itkVoronoiDiagram2DGenerator style. >>>>>> ENH: Improve VoronoiDiagram2DGenerator coverage. >>>>>> STYLE: Improve the itkBayesianClassifierImageFilter style. >>>>>> STYLE: Improve the itkMetaArrayWriter style. >>>>>> ENH: Improve itkCovarianteImageFunction coverage. >>>>>> COMP: Fix signed/unsigned int comparison warning. >>>>>> DOC: Improve itkGrayscaleDilateImageFilter documentation. >>>>>> DOC: Improve documentation for itkGrayscaleErodeImageFilter. >>>>>> DOC: Improve ConfigureHistogram method documentation. >>>>>> STYLE: Improve the itkMovingHistogramMorphologyImagefilter >>>>>> style. >>>>>> BUG: Fix Superclass name in RTTI. >>>>>> STYLE: Improve itkGaussianInterpolateImageFunction style. >>>>>> ENH: Improve coverage for itkGaussianInterpolateImageFunction. >>>>>> ENH: Improve itkBayesianClassifierImageFilter coverage. >>>>>> ENH: Add itkBSplineControlPointImageFilter RTTI. >>>>>> STYLE: Improve itkBSplinecontrolPointImageFilter style. >>>>>> ENH: Improve itkBSplineControlPointImageFilter coverage. >>>>>> ENH: Improve coverage for itkRegularStepGradientDescentO >>>>>> ptimizerv4. >>>>>> STYLE: Improve the class implementation file style. >>>>>> STYLE: Improve the itkResampleImageFilter style. >>>>>> DOC: Fix typo in GetMTime method doc. >>>>>> STYLE: Remove out-of-body implementation doc >>>>>> ENH: Improve itkResampleImageFilter coverage. >>>>>> ENH: Improve itkAbsImageAdaptor and Filter coverage. >>>>>> BUG: Fix itkLSMImageIO class' Superclass name. >>>>>> ENH: Improve the itkInterpolateImagePointsFilter coverage. >>>>>> ENH: Improve itkPowImageFilter coverage. >>>>>> BUG: Fix ConvolutionImageFilter RTTI. >>>>>> STYLE: Use initialization lists. >>>>>> STYLE: Improve BinaryFunctorImageFilter style. >>>>>> ENH: Improve itkMinimumImageFilter code coverage. >>>>>> BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. >>>>>> ENH: Improve MaximumImageFilter coverage. >>>>>> BUG: Fix conversion to PixelType conversion. >>>>>> COMP: Fix double to unsigned char conversion warning. >>>>>> ENH: Improve coverage for itkNormalizeToConstantImageFilter. >>>>>> BUG: Fix itkSquaredDifferenceErrorFunction RTTI. >>>>>> ENH: Improve itkMeanImageFunctionCoverage. >>>>>> ENH: Improve itkSquareImageFilter coverage. >>>>>> STYLE: Improve the itkSquaredDifferenceErrorFunction style. >>>>>> STYLE: Enhance style for itkNormalizeToConstantImageFilter. >>>>>> STYLE: Improve itkMeanImageFunction style. >>>>>> ENH: Remove unnecesary call to filter print. >>>>>> ENH: Improve itkRegionOfInterestImageFilter coverage. >>>>>> STYLE: Improve itkRegionOfInterestImageFilter style. >>>>>> STYLE: Improve itkPasteImageFilter style. >>>>>> STYLE: Improve itkJoinSeriesImageFilter style. >>>>>> BUG: Fix itkPadLabelMapFilter RTTI Superclass. >>>>>> COMP: Address std::cout.precision conversion warning. >>>>>> ENH: Improve itkBayesianClassifiertImageFilter coverage. >>>>>> ENH: Improve itkPadLabelMapFilter coverage. >>>>>> ENH: Improve itkJoinSeriesImageFilter coverage. >>>>>> ENH: Improve the itkPasteImageFilter coverage. >>>>>> ENH: Improve MeanImageFilter coverage. >>>>>> COMP: Address std::cout.precision conversion warning. >>>>>> ENH: Improve TernaryMagnitudeImageFilter coverage. >>>>>> ENH: Improve FFTConvolutionImageFilter coverage. >>>>>> DOC: Fix class documentation in ternary magnitude filters. >>>>>> ENH: Improve ConstrainedValueDifferenceImageFilter coverage. >>>>>> ENH: Improve AndImageFilter coverage. >>>>>> ENH: Add baseline test to itkTernaryMagnitudeImageFilter. >>>>>> ENH: Use MD5 comparison framework in baseline test. >>>>>> ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. >>>>>> STYLE: Improve the itkVectorRescaleIntensityImageFilter style. >>>>>> ENH: Print missing ivar in filter PrintSelf method. >>>>>> ENH: Improve itkComplexToImaginaryFilter coverage. >>>>>> ENH: Improve itkComplexToPhaseImageFilter coverage. >>>>>> ENH: Improve itkComplexToModulusImageFilter coverage. >>>>>> ENH: Improve itkComplexToRealImageFilter coverage. >>>>>> ENH: Improve itkVectorResampleImageFilter coverage. >>>>>> ENH: Add GetTransform method. >>>>>> ENH: Improve itkConstrainedValueAdditionImageFilter coverage. >>>>>> ENH: Improve itkModulusImageFilter coverage. >>>>>> ENH: Improve itkLog10ImageFilter coverage. >>>>>> ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. >>>>>> ENH: Improve itkLogImageFilter coverage. >>>>>> ENH: Improve itkInvertIntensityImageFilter coverage. >>>>>> STYLE: Improve itkInvertIntensityImageFilter style. >>>>>> DOC: Add missing doc to itkInvertIntensityImageFilter. >>>>>> STYLE: Improve itkIntensityWindowingImageFilter style. >>>>>> STYLE: Use initialization lists. >>>>>> ENH: Improve itkIntensityWindowingImageFilter coverage. >>>>>> ENH: Improve itkNaryMaximumImageFilter coverage. >>>>>> COMP: Fix std::precision type casting warning. >>>>>> ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. >>>>>> STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod >>>>>> style. >>>>>> ENH: Remove SmartPointers being explicitly initialized to null. >>>>>> STYLE: Improve the itkPointSetToImageRegistrationMethod style. >>>>>> ENH: Improve itkPointSetToImageRegistration coverage. >>>>>> STYLE: Change the name of the itkPointSetToImageRegistrationMethod >>>>>> test. >>>>>> STYLE: Improve itkVectorResampleImageFilter style. >>>>>> STYLE: Improve the itkAntiAliasBinaryImageFilter style. >>>>>> ENH: Improve trigonometric function filters' coverage. >>>>>> STYLE: Remove test names from std::out messages. >>>>>> ENH: Improve Boolean Algebra ImageFilters coverage. >>>>>> STYLE: Improve the EuclideanDistancePointMetric style. >>>>>> ENH: Improve itkSigmoidImageFilter coverage. >>>>>> STYLE: Improve itkCropImageFilter style. >>>>>> ENH: Improve itkCropImageFilter coverage. >>>>>> ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. >>>>>> ENH: Improve itkRescaleIntensityImageFilter coverage. >>>>>> ENH: Improve the itkMatrixSelectionImageFilter coverage. >>>>>> ENH: Improve itkTanImageFilter and Adaptor coverage. >>>>>> ENH: Increase itkSqrtImageFilter and Adaptor coverage. >>>>>> ENH: Increase itkTernaryOperatorImageFilter coverage. >>>>>> ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. >>>>>> STYLE: Improve itkScalarImagekmeansImageFilter style. >>>>>> STYLE: Conform to TEST_SET_GET_VALUE definition. >>>>>> BUG: Fix uninitialized variable due to dynamic analysis defect. >>>>>> BUG: Fix uninitialized variable defect reported by valgrind. >>>>>> ENH: Improve the itkPointSetToPointSetRegistrationTest. >>>>>> ENH: Improve the itkPointSetToImageRegistrationTest. >>>>>> ENH: Increas BinaryMagnitudeImageFilter coverage. >>>>>> STYLE: Remove test name from std output. >>>>>> ENH: Increase MagnitudeImageFilter coverage. >>>>>> BUG: Fix uninitialized variable defect reported by valgrind. >>>>>> BUG: Fix Superclass name in RTTI. >>>>>> STYLE: Improve itkFrustumSpatialFunction style. >>>>>> STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction >>>>>> style. >>>>>> BUG: Fix Superclass template argument list. >>>>>> STYLE: Improve the itkTorusInteriorExteriorSpatialFunction >>>>>> style. >>>>>> STYLE: Improve the itkCheckerBoardImageFilter class style. >>>>>> ENH: Improve the itk::LabelVotingImageFilter coverage. >>>>>> ENH: Improve itkCheckerBoardImageFilter coverage. >>>>>> STYLE: Improve itk::LabelVotingImageFilter style. >>>>>> STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. >>>>>> ENH: Add test for itk::FrustumSpatialFunction class. >>>>>> ENH: Improve itkConnectedThresholdImageFilter coverage. >>>>>> STYLE: Improve itkConnectedThresholdImageFilter style. >>>>>> BUG: Fix FrustumSpatialFunction internal precision conversion. >>>>>> COMP: Fix implicit conversion warning. >>>>>> STYLE: Improve itkThresholdImageFilter style. >>>>>> ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. >>>>>> BUG: Fix Superclass template argument list. >>>>>> ENH: Improve itkUnsharpMaskingImageFilter implementation. >>>>>> ENH: Improve the itkUnsharpMaskingImageFilter coverage. >>>>>> ENH: Fix UnsharpMaskingImageFilter test inconsistencies. >>>>>> BUG: Add missing itkTypeMacro. >>>>>> DOC: Document the member variables. >>>>>> BUG: Fix the itkImageSource RTTI class name, >>>>>> STYLE: Improve itkLabelImageGaussianInterpolateImageFunction >>>>>> style. >>>>>> ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. >>>>>> STYLE: Improve itkLabelOverlapMeasurementImageFilter style. >>>>>> >>>>>> KWSys Robot (6): >>>>>> KWSys 2016-06-30 (96f06c8e) >>>>>> KWSys 2016-10-23 (b630d2f5) >>>>>> KWSys 2016-11-03 (37306a1c) >>>>>> KWSys 2016-11-08 (2b3e2b1c) >>>>>> KWSys 2016-11-09 (18c65411) >>>>>> KWSys 2016-11-21 (cb55cf5a) >>>>>> >>>>>> Maeliss Jallais (1): >>>>>> BUG: Add unsigned and signed short to the wrapping of vnl_matrix >>>>>> >>>>>> Matthew McCormick (85): >>>>>> PERF: Simplify HilbertPath numberOfPathVertices computation. >>>>>> BUG: CID 1355469 NNetClassifierTest4 unintended integer division. >>>>>> BUG: Update Cuberille Remote for version check fix. >>>>>> ENH: Bump ITK version to 4.11.0. >>>>>> BUG: Fix HDF5ImageIO type information. >>>>>> BUG: Fix H5File memory leak in HDF5ImageIO. >>>>>> DOC: Collect Francois Budin's contributions in .mailmap >>>>>> BUG: Limit WRAP_ITK_MODULES when building externally >>>>>> STYLE: Improvements to ResourceProbe report output. >>>>>> ENH: Add a useTabs argument to ResourceProbe::Report. >>>>>> ENH: Add standard error measure to the ResourceProbe >>>>>> ENH: Add itk_python_add_test function. >>>>>> BUG: Remove VNL file from subtree merge. >>>>>> COMP: Fix wrapping with a space in the Python include path >>>>>> BUG: Fix PermuteAxesImageFilter pipeline method visibility >>>>>> BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter >>>>>> BUG: ResampleImageFilter honor isInside output of the transform >>>>>> method >>>>>> COMP: Avoid recursive include of itkMath.h >>>>>> COMP: Fix VXL header installation locations >>>>>> BUG: ClampImageFilterTest for older GCC, InPlaceOn >>>>>> DOC: Add CONTRIBUTING.md file to the top level. >>>>>> COMP: Update VariationalRegistration to address Doxygen warnings >>>>>> BUG: Compiler detections file installed into ITK build tree >>>>>> location >>>>>> COMP: Do not use string(TIMESTAMP. >>>>>> COMP: Remove HDF5 -std=c99 for C++ files >>>>>> BUG: Do not build HDF5 static library with a shared build >>>>>> ENH: Add PerformanceBenchmarking Remote Module >>>>>> COMP: Remove duplicate wrappings for ResampleImageFilter >>>>>> BUG: Put Python test output files in the build tree >>>>>> BUG: Improve HDF5ImageIO::CloseDataSet name >>>>>> COMP: Use add_python_test PythonLazyLoadingImage >>>>>> COMP: Address missing override it itkFactoryTestLib.cxx >>>>>> BUG: Index,Size,Offset constructors present in Python with C++11 >>>>>> COMP: Address missing override it itkFactoryTestLib.cxx >>>>>> BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT >>>>>> ENH: Bump SetupForDevelopment version >>>>>> BUG: Add missing ZLib deflate support to HDF5 >>>>>> BUG: Address memory leak, remove NumPy build dep in BridgeNumPy >>>>>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >>>>>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >>>>>> BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include >>>>>> ITK_WRAP_IMAGE_DIMS >>>>>> BUG: RichardsonLucyDeconvolutionImageFilter with non-null input >>>>>> Image Origin >>>>>> BUG: Fix inconsistent Twister start with Initialize(seed) and >>>>>> SetSeed(seed) >>>>>> BUG: Do not hard code CMake scripts in HDF5 >>>>>> COMP: Workaround Emscripten ITKCommon test build failure >>>>>> COMP: Do embed fancy HDF5 libsettings with Emscripten >>>>>> COMP: Add missing H5T_patch_vlen_file declaration >>>>>> ENH: Bump CastXML to 2016-10-11 master. >>>>>> COMP: Workaround Emscripten ITKCommon test build failure >>>>>> BUG: Swap CastXML hashes for Mac OSX and Windows >>>>>> ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 >>>>>> COMP: Fix VNL tests when cross-compiling >>>>>> ENH: ExternalData multi-algorithm support >>>>>> ENH: ExternalData support for data.kitware.com >>>>>> BUG: Install missing H5pubconf.h >>>>>> BUG: Use SpacePrecisionType in TileImageFilter >>>>>> BUG: Use internal ExternalData_Add_Target >>>>>> ENH: Run .sha512, .md5 simultaneous modification pre-commit check >>>>>> BUG: Correct CastXML Windows binary >>>>>> BUG: Support non-zero Index in LevelSetNeighborhoodExtractor >>>>>> ENH: Add ArchiveTestingDataOnGirder.py >>>>>> BUG: Correct AtanRegularizationHeavisideStepFunction derivative >>>>>> ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh >>>>>> BUG: Remove extra HessianToObjectness content links >>>>>> ENH: Wrap SpatialFunction float types with ITK_WRAP_float >>>>>> BUG: Bump PerformanceBenchmarking to 2016-11-04 >>>>>> BUG: itk_python_expression_add_test too many quotes. >>>>>> ENH: Wrap VectorImage with complex real pixel types >>>>>> ENH: Bump PerformanceBenchmarking to 2016-11-07 >>>>>> BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter >>>>>> ENH: Create itk_module_add_library macro >>>>>> BUG: Update computeCodeCoverageLocally.sh for KWStyle addition >>>>>> COMP: Install a newer version of CMake on CircleCI >>>>>> ENH: Use GitHub Pages as the first ExternalData resource >>>>>> ENH: Add tests to demonstrate OSX dynamic_cast failure >>>>>> BUG: Use random seed with for MersenneTwisterRandomVariateGe >>>>>> nerator. >>>>>> BUG: Enable program global timestamp >>>>>> BUG: Set random number seed in Mattes metric test >>>>>> BUG: Notify builder that ITK_DYNAMIC_LOADING is required with >>>>>> wrapping >>>>>> BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON >>>>>> BUG: Set random number seed mutual information metric tests >>>>>> BUG: Wrap std::vector< itk.Point > >>>>>> BUG: Fix wrapping of LandmarkBasedTransformInitializer >>>>>> BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter >>>>>> DOC: Add D?enan Zuki? to .mailmap >>>>>> >>>>>> Max Smolens (4): >>>>>> COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar >>>>>> field >>>>>> BUG: CID-1355438 QuadEdgeTest1 resource leaks >>>>>> COMP: CID-1355472 MIRegistrationFunction unused value >>>>>> COMP: Fix link errors for VNL template instantiations on Windows >>>>>> >>>>>> Mayeul Chassagnard (7): >>>>>> BUG: Test added and error fixed in HDF5ImageIO >>>>>> ENH: Update add_library TO itk_module_add_library >>>>>> COMP: Set Policy CMP0023 target_link_libraries for >>>>>> Modules/ThirdParty/VNLI... >>>>>> BUG: Add ITK_TEMPLATE_EXPORT to template classes >>>>>> BUG: Fix errors linked to dyn_cast merge >>>>>> BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for >>>>>> classes >>>>>> BUG: dash3win7 dashboard build error unresolved external symbol >>>>>> >>>>>> Michka Popoff (3): >>>>>> ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 >>>>>> ENH: Update igenerator.py for pygccxml v1.8.0 >>>>>> COMP: Use pygccxml's public API for apply definitions >>>>>> >>>>>> Pierre Barbier de Reuille (2): >>>>>> COMP: Fix function naming error when using FFTWD >>>>>> COMP: Fix function naming error when using FFTWD >>>>>> >>>>>> Sean McBride (1): >>>>>> COMP: Bypass HDF5 bugs under TSan >>>>>> >>>>>> Simon Rit (2): >>>>>> COMP: remove C++11 compiler warning for CUDA compilations >>>>>> COMP: remove C++11 compiler warning for CUDA compilations >>>>>> >>>>>> Somesh Kashyap (2): >>>>>> BUG: Override TransformCategoryType for >>>>>> AzimuthElevationToCartesianTransform >>>>>> BUG: -Added test case for itkAzimuthElevationToCartesian >>>>>> Transform >>>>>> >>>>>> Sumedha Singla (1): >>>>>> ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote >>>>>> module >>>>>> >>>>>> Taylor Braun-Jones (4): >>>>>> COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is >>>>>> enabled >>>>>> COMP: Fix truncation from double to float warning >>>>>> DOC: Fix incorrect itkFactorylessNewMacro documentation >>>>>> COMP: Only include the headers for required OpenCV modules >>>>>> >>>>>> Thien Nguyen (1): >>>>>> PERF: SmapsFileParser unnecessary dynamic_cast >>>>>> >>>>>> VXL Maintainers (4): >>>>>> VNL 2016-05-15 (14f97ab4) >>>>>> VNL 2016-06-22 (23a93adb) >>>>>> VNL 2016-06-29 (d62a2d70) >>>>>> VNL 2016-07-06 (acfa62cc) >>>>>> >>>>>> Vladimir S. FONOV (1): >>>>>> COMP: Build against GCC 5.3.1 >>>>>> >>>>>> Zach Williamson (2): >>>>>> ENH: Update Remote Module Tags >>>>>> BUG: Fix Python Wrappings in C++11 >>>>>> >>>>>> Ziv Yaniv (1): >>>>>> BUG: Metric sampling percentage accepted values outside (0.0, >>>>>> 1.0]. >>>>>> >>>>>> >>>>>> ITK Software Guide Changes >>>>>> ---------------------------------------- >>>>>> >>>>>> Matt McCormick (8): >>>>>> DOC: Move the location for obtaining the software >>>>>> DOC: Remove reference to ITKApps >>>>>> ENH: Bump ITK ExternalProject version to 2016-11-02 master >>>>>> DOC: Document the ITK module registry >>>>>> ENH: Bump ITK ExternalProject version to v4.11rc01 master >>>>>> DOC: Update CMake hyperlinks >>>>>> DOC: Update minimum required CMake version to 2.8.9 >>>>>> DOC: Add section on static and shared libraries. >>>>>> >>>>>> >>>>>> ITK Sphinx Examples Changes >>>>>> ------------------------------------------- >>>>>> >>>>>> Matt McCormick (6): >>>>>> BUG: Use GDCM ITK module name >>>>>> ENH: Rename ReadDICOMSeriesAndWrite3DImage >>>>>> BUG: Add tests for ReadDICOMSeriesAndWrite3DImage >>>>>> ENH: Bump ITK Superbuild version to 2016-09-20 master >>>>>> ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage >>>>>> ENH: Add Python version of CreateAnRGBImage >>>>>> >>>>>> Michka Popoff (5): >>>>>> ENH: Use same Python interpreter as ITK for wrapping tests >>>>>> BUG: Fix ResampleAnImage example (Python3) >>>>>> ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRe >>>>>> gionOfAnImage >>>>>> ENH: Add 7 Python examples to Core/Common >>>>>> ENH: Add BoundingBoxOfAPointSet Python example >>>>>> >>>>>> >>>>>> ----------------------------------------------------- >>>>>> Errors or omissions? Please fix them here: >>>>>> >>>>>> >>>>>> https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFr >>>>>> A54KRvf__4oeT0ymzZg/edit >>>>>> _______________________________________________ >>>>>> Powered by www.kitware.com >>>>>> >>>>>> Visit other Kitware open-source projects at >>>>>> http://www.kitware.com/opensource/opensource.html >>>>>> >>>>>> Kitware offers ITK Training Courses, for more information visit: >>>>>> http://kitware.com/products/protraining.php >>>>>> >>>>>> Please keep messages on-topic and check the ITK FAQ at: >>>>>> http://www.itk.org/Wiki/ITK_FAQ >>>>>> >>>>>> Follow this link to subscribe/unsubscribe: >>>>>> http://public.kitware.com/mailman/listinfo/insight-developers >>>>>> >>>>> >>>>> >>>>> _____________________________________ >>>>> Powered by www.kitware.com >>>>> >>>>> Visit other Kitware open-source projects at >>>>> http://www.kitware.com/opensource/opensource.html >>>>> >>>>> Kitware offers ITK Training Courses, for more information visit: >>>>> http://www.kitware.com/products/protraining.php >>>>> >>>>> Please keep messages on-topic and check the ITK FAQ at: >>>>> http://www.itk.org/Wiki/ITK_FAQ >>>>> >>>>> Follow this link to subscribe/unsubscribe: >>>>> http://public.kitware.com/mailman/listinfo/insight-users >>>>> >>>>> >>>> >>> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From taylor at braun-jones.org Mon Jan 30 14:21:02 2017 From: taylor at braun-jones.org (Taylor Braun-Jones) Date: Mon, 30 Jan 2017 14:21:02 -0500 Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.11 Release Candidate 2 is ready for testing! In-Reply-To: References: Message-ID: Confirmed on my end as well. Thanks for following up. On Sun, Jan 29, 2017 at 4:41 PM, D?enan Zuki? wrote: > RC3 got released on Friday, and it builds ITK without issue! > > On Thu, Jan 19, 2017 at 5:00 PM, Taylor Braun-Jones < > taylor at braun-jones.org> wrote: > >> Cool, thanks D?enan! >> >> On Thu, Jan 19, 2017 at 2:14 PM, D?enan Zuki? wrote: >> >>> ... and more: >>> >>> Additionally, we've added ITK and VTK libraries from GitHub to our daily >>> compiler testing and validations. So in short, from now on we will be >>> releasing MSVC compiler versions to the public where live GitHub ITK and >>> VTK sources will build clean. That's a promise :). >>> >>> Thanks, >>> Ulzii Luvsanbat >>> Visual C++ Team >>> >>> On Thu, Jan 19, 2017 at 1:21 PM, D?enan Zuki? wrote: >>> >>>> A new reply in that bug report: >>>> >>>> Hi, there's a lag when we, the compiler team, tags the bug resolved and >>>> the fix actually gets included in the VS release. We apologize for that, >>>> it's just the way how engineering works to get everything ready in VS to be >>>> shipped. This specific bug has been fixed for the VS2017 RC3 release, which >>>> is only days away from shipping. >>>> >>>> If you'd you like to validate your project before that with a private >>>> Nuget package of the compiler toolset, then please send me an email here >>>> (batul at Microsoft dot com), and I can get you going. >>>> >>>> On Thu, Jan 19, 2017 at 12:46 PM, D?enan Zuki? >>>> wrote: >>>> >>>>> Hi Taylor, >>>>> >>>>> I submitted a bug >>>>> >>>>> report to Microsoft about it, and somebody said they will add ITK to their >>>>> compiler test suite. Also, that crashing bug was supposedly fixed for >>>>> "final release". >>>>> >>>>> Regards, >>>>> D?enan >>>>> >>>>> On Thu, Jan 19, 2017 at 12:18 PM, Taylor Braun-Jones < >>>>> taylor at braun-jones.org> wrote: >>>>> >>>>>> Any chance the 4.11 release could have at least some preliminary >>>>>> support for VS2017? Right now it crashes the compiler: >>>>>> >>>>>> C:\src\itk\modules\core\common\include\itkPromoteType.h(97): fatal >>>>>> error C1001: An internal error has occurred in the compiler. >>>>>> (compiler file 'msc1.cpp', line 1469) >>>>>> To work around this problem, try simplifying or changing the program >>>>>> near the locations listed above. >>>>>> Please choose the Technical Support command on the Visual C++ >>>>>> Help menu, or open the Technical Support help file for more >>>>>> information >>>>>> Internal Compiler Error in C:\PROGRA~2\MIB055~1\2017\COMM >>>>>> UN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe. You will be >>>>>> prompted to send an error report to Microsoft later. >>>>>> INTERNAL COMPILER ERROR in 'C:\PROGRA~2\MIB055~1\2017\COM >>>>>> MUN~1\VC\Tools\MSVC\1410~1.247\bin\HostX64\x64\cl.exe' >>>>>> Please choose the Technical Support command on the Visual C++ >>>>>> Help menu, or open the Technical Support help file for more >>>>>> information >>>>>> >>>>>> Taylor >>>>>> >>>>>> On Mon, Jan 16, 2017 at 4:18 PM, Matt McCormick < >>>>>> matt.mccormick at kitware.com> wrote: >>>>>> >>>>>>> On behalf of the Insight Toolkit community, we are proud to announce >>>>>>> that ITK 4.11 release candidate 2 has been tagged and is available >>>>>>> for >>>>>>> testing! Please take this opportunity to test the new features in the >>>>>>> release candidate. >>>>>>> >>>>>>> >>>>>>> To obtain the source code, use the links: >>>>>>> >>>>>>> >>>>>>> https://github.com/Kitware/ITK/archive/v4.11rc02.zip >>>>>>> https://github.com/Kitware/ITK/archive/v4.11rc02.tar.gz >>>>>>> >>>>>>> or >>>>>>> >>>>>>> git clone https://itk.org/ITK.git >>>>>>> cd ITK >>>>>>> git checkout -q --detach v4.11rc02 >>>>>>> >>>>>>> For more details, please see the Git documentation [1]. >>>>>>> >>>>>>> >>>>>>> A few selected highlights for this release: >>>>>>> >>>>>>> - Remote Modules were added to: perturb mesh vertices with additive >>>>>>> gaussian noise, accurately benchmark computational performance, >>>>>>> perform principal components analysis of scalar, vector, and mesh >>>>>>> vertex data, create a run-length encoded memory compression scheme >>>>>>> for >>>>>>> itk::Image, run N-D morphological contour interpolation, interpolate >>>>>>> multi-label images, iterate over multiple images simultaneously, and >>>>>>> compute inverse displacement fields. >>>>>>> - NumPy bridge support is now enabled by default with NumPy array >>>>>>> views of multi-component images and VNL vectors and matrices. >>>>>>> - Internal HDF5 was updated to the latest upstream version along >>>>>>> with a number of other third-party libraries. >>>>>>> >>>>>>> >>>>>>> This release introduces a new template class export specification >>>>>>> macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated >>>>>>> classes to address failing dynamic_cast's and exception catching >>>>>>> across binaries on Mac OSX. >>>>>>> >>>>>>> Bugs were addressed and improvements were made to how the >>>>>>> pseudo-random number generator is used. Tests that rely on the random >>>>>>> number generator should explicitly set the global seed at start: >>>>>>> >>>>>>> itk::Statistics::MersenneTwisterRandomVariateGenerator::GetI >>>>>>> nstance()->SetSeed( >>>>>>> 121212 ); >>>>>>> >>>>>>> To improve randomness, new instances of the generator start from a >>>>>>> different seed; some minor differences in the output of algorithms >>>>>>> that uses the generator, like mutual information metrics, should be >>>>>>> expected. >>>>>>> >>>>>>> Additionally, output may change for registration with composite >>>>>>> affine >>>>>>> transforms; the v4 registration framework now uses corner sampling as >>>>>>> opposed to random sampling to estimate their parameter scales. >>>>>>> >>>>>>> >>>>>>> Please test the release candidate and share your experiences on the >>>>>>> mailing list, issue tracker, and Gerrit Code Review. >>>>>>> >>>>>>> >>>>>>> An Experimental build, which demonstrates how the test suite performs >>>>>>> on your local build system, can be submitted to the dashboard [2] >>>>>>> with: >>>>>>> >>>>>>> mkdir ../ITK-build >>>>>>> cd ../ITK-build >>>>>>> cmake ../ITK >>>>>>> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit >>>>>>> >>>>>>> Visual Studio builds must also add ?-C Release? to the ctest command. >>>>>>> >>>>>>> Notify the mailing list if there are any unexpected failures. >>>>>>> Testing >>>>>>> your own applications against the RC is also appreciated. >>>>>>> >>>>>>> >>>>>>> Congratulations to the 31 contributors to this release. We would >>>>>>> especially like to recognize the new contributors: Hastings Greer, >>>>>>> Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, >>>>>>> Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss >>>>>>> Jallais. >>>>>>> >>>>>>> >>>>>>> The 4.11.0 final release is scheduled for January 23rd. >>>>>>> >>>>>>> >>>>>>> [1] http://www.itk.org/Wiki/ITK/Git >>>>>>> >>>>>>> [2] http://open.cdash.org/index.php?project=Insight >>>>>>> >>>>>>> >>>>>>> New Features >>>>>>> ------------ >>>>>>> >>>>>>> * Wrapping Improvements >>>>>>> - Python GetArrayFromImage() and GetImageFromArray() from >>>>>>> ITKBridgeNumPy are directly accessible from the Python itk namespace. >>>>>>> - The itk package loads much faster: individual modules are loaded >>>>>>> only when required. >>>>>>> - Conversion of ITK images from and to NumPy array using Bridge >>>>>>> NumPy supports RGB, RGBA, and Vector images. >>>>>>> - VNL vectors and VNL matrices can be converted from and to NumPy >>>>>>> objects with respectively the new couple of functions >>>>>>> GetArrayFromVnlVector()/GetVnlVectorFromArray() and >>>>>>> GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() >>>>>>> - The global timestamp is used across all ITK Python modules when >>>>>>> built statically >>>>>>> - Wrap additional classes such as KernelFunctionBase >>>>>>> - itk_python_add_test CMake function added for Python script >>>>>>> testing >>>>>>> in ITK modules >>>>>>> >>>>>>> * New Remote Modules >>>>>>> - DVMeshNoise >>>>>>> - Perturbing mesh vertices with additive gaussian noise >>>>>>> - http://hdl.handle.net/10380/3567 >>>>>>> - PerformanceBenchmarking >>>>>>> - Accurate benchmarking of computational performance >>>>>>> - http://hdl.handle.net/10380/3557 >>>>>>> - PrincipalComponentsAnalysis >>>>>>> - Principal components analysis of scalar, vector, and mesh >>>>>>> vertex data >>>>>>> - http://hdl.handle.net/10380/3386 >>>>>>> - RLEImage >>>>>>> - Run-length encoded memory compression scheme for itk::Image >>>>>>> - http://hdl.handle.net/10380/3562 >>>>>>> - MorphologicalContourInterpolation >>>>>>> - N-D morphological contour interpolation >>>>>>> - http://hdl.handle.net/10380/3563 >>>>>>> - GenericLabelInterpolator >>>>>>> - A generic interpolator for multi-label images >>>>>>> - http://hdl.handle.net/10380/3506 >>>>>>> - MultipleImageIterator >>>>>>> - Iterate over multiple images simultaneously >>>>>>> - http://hdl.handle.net/10380/3455 >>>>>>> - FixedPointInverseDisplacementField >>>>>>> - Computes inverse displacement field >>>>>>> - http://hdl.handle.net/10380/3222 >>>>>>> >>>>>>> * Core Improvements >>>>>>> - New ITK_TEMPLATE_EXPORT for templated classes resolves >>>>>>> cross-binary dynamic_cast on Mac OSX >>>>>>> - New MersenneTwisterRandomVariateGenerator instances are >>>>>>> initialized with different seeds >>>>>>> - Use compiler feature detection in CMake for C++11 features, etc. >>>>>>> - New CMake macro itk_module_add_library for creating libraries in >>>>>>> ITK modules >>>>>>> - Improved support for ccache and distcc with >>>>>>> CMAKE__COMPILER_LAUNCHER (CMake >=3.4 required) >>>>>>> - Support for .sha512 ExternalData content links >>>>>>> - GitHub Pages and data.kitware.com ExternalData repositories >>>>>>> added >>>>>>> - GPGPU system support for C++11 >>>>>>> - Support of new compilers: Visual Studio 15 and XCode 8.2.1 >>>>>>> (clang-800.0.42.1) >>>>>>> >>>>>>> * Filtering Improvements >>>>>>> - HessianToObjectnessMeasure moved out of the ITKReview module >>>>>>> - New UnsharpMaskImageFilter for image edge enhancement >>>>>>> >>>>>>> * IO Improvements >>>>>>> - TransformFactory class has been moved to a separate module >>>>>>> - Spline order added to BSplineTransform identifier >>>>>>> - Improved NIFTI orientation support >>>>>>> >>>>>>> * Documentation Improvements >>>>>>> - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples >>>>>>> >>>>>>> * Third Party Library Updates >>>>>>> - pygccxml updated to v1.8.0 >>>>>>> - VNL updated to latest upstream (2016.07.06) >>>>>>> - SWIG updated to v3.0.11 >>>>>>> - KWSys updated to latest upstream (2016.11.21) >>>>>>> - HDF5 updated to v1.8.17 >>>>>>> - SCIFIO updated to latest upstream (2016.12.01) >>>>>>> - DCMTK updated to 3.6.1_20121012 >>>>>>> - CastXML to latest upstream (2016.01.28) >>>>>>> >>>>>>> * Improved Code Coverage -- we are at 85.44%! >>>>>>> - Jon Haitz-Legarreta's extensive code coverage improvements >>>>>>> - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ >>>>>>> >>>>>>> * *Lots* of important bug fixes >>>>>>> >>>>>>> * And much more! See details in the log below. >>>>>>> >>>>>>> >>>>>>> Changes from v4.11rc01 to v4.11rc02 >>>>>>> ----------------------------------- >>>>>>> >>>>>>> Bradley Lowekamp (5): >>>>>>> BUG: Remove unused SimpleImageRegistrationTest baselines >>>>>>> ENH: Expose GetNextSeed method in MersenneTwiseter Generator >>>>>>> BUG: Add option for fixed seed or wall clock seed for sampling >>>>>>> BUG: Use metric random seed in v3 examples >>>>>>> BUG: Prefer setting seed at algorithm in "v4" tests. >>>>>>> >>>>>>> Francois Budin (3): >>>>>>> ENH: Update BridgeNumPy to latest version on 2017.01.08 to >>>>>>> address ITK-3511 >>>>>>> BUG: Extra \$ in doxygen comment >>>>>>> BUG: Binary include directory added only if enabled shared >>>>>>> >>>>>>> Jon Haitz Legarreta (2): >>>>>>> DOC: Document itkLabelOverlapMeasuresImageFilter methods. >>>>>>> DOC: Fix ITKImageNoise filters' doc TeX errors. >>>>>>> >>>>>>> Matthew McCormick (1): >>>>>>> BUG: Remove invalid ImageRegistration4Test.png.sha512 >>>>>>> >>>>>>> Max Smolens (1): >>>>>>> DOC: Fix itkUnsharpMaskImageFilter documentation typos >>>>>>> >>>>>>> Simon Rit (1): >>>>>>> BUG: ITK-based software was crasing when thread creation failed >>>>>>> >>>>>>> >>>>>>> Changes from v4.10.0 to v4.11rc01 >>>>>>> --------------------------------- >>>>>>> >>>>>>> Bill Lorensen (4): >>>>>>> COMP: Restore support for clang 3.0 compiler >>>>>>> COMP: Consistent use of ModifiedTimeType >>>>>>> ENH: Bump WikiExamples remote module version >>>>>>> ENH: Bump WikiExamples version >>>>>>> >>>>>>> Bradley Lowekamp (57): >>>>>>> ENH: Add registered TrasformIO's to exception >>>>>>> ENH: Use template or constant for loop stop condition >>>>>>> ENH: Updating SWIG version to 3.0.9 >>>>>>> COMP: Address VS9 ambiguous std::abs call in Haung calculator >>>>>>> COMP: Fix undefined NumericTraits::Zero and One errors with >>>>>>> mingw64 >>>>>>> BUG: Fix segfault if ~CleanUpObjectFactory called multiple times >>>>>>> BUG: Address itkHDF5ImageIO test failures for mingw64 >>>>>>> BUG: demonstrate dynamic_cast failure when reading transforms >>>>>>> BUG: Address itkHDF5ImageIO test failures for mingw64 >>>>>>> ENH: Updating SWIG version to 3.0.10 >>>>>>> ENH: Enable CMP0063 New behavior >>>>>>> COMP: Enable hidden visibility property with vxl static >>>>>>> libraries >>>>>>> COMP: Enable hidden visibility property with HDF5 static >>>>>>> libraries >>>>>>> COMP: Enable hidden visibility property with HDF5 static >>>>>>> libraries >>>>>>> BUG: Match Add2 function to AddImageFilter documentation >>>>>>> ENH: Improve support for std::complex with PowImageFilter >>>>>>> ENH: Explicitly mark required files for dependent tests >>>>>>> COMP: Bypass XCode 7.3,8 internal compilation error >>>>>>> COMP: Address CMake configuration error with itkJPEG2000Test03 >>>>>>> property >>>>>>> BUG: Correct test's REQUIRED_FILES to only the input. >>>>>>> ENH: move HessianToObjectnessMeasure filter out of Review >>>>>>> ENH: Separate TransformFactory class into separate module >>>>>>> DOC: Add links between similar label to rgb filters >>>>>>> ENH: Separate data from function calls >>>>>>> COMP: Fix changed Graft method >>>>>>> ENH: Reduce template dependencies on CalculateRotationMatrix >>>>>>> ENH: Add Functor Accessors to LabelMapToRGB filter >>>>>>> BUG: Enable VirtualDomain and FixedTransform in RegMethv4 >>>>>>> BUG: Use BSpline Order 3 for 2D in transform factory. >>>>>>> ENH: Add spline order to BSplineTransform's string id >>>>>>> ENH: Adding initial CircleCi configuration file >>>>>>> COMP: Fix float to unsigned integer conversion warnings >>>>>>> BUG: Include installed modules in ITK_MODULES_ENABLED >>>>>>> COMP: Address CMake error that ITKGPUCommon is not in export >>>>>>> COMP: Address wrong library types with VS and shared libraries >>>>>>> BUG: Ensure CreateImageIO is concurrent thread safe >>>>>>> ENH: Mark HDF5 CMake options as internal >>>>>>> COMP: Add template export declaration for ParametricPath >>>>>>> COMP: Correct TEMPLATE_EXPLICIT definition in Path module >>>>>>> ENH: Factor out common code in the TrasformFactoryBase >>>>>>> registration >>>>>>> ENH: Add CMake variable for max transform dimension, defaults 4 >>>>>>> ENH: Create CMake module to check for private RTTI compatibility >>>>>>> ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT >>>>>>> COMP: Correct ifndef value to allow user defined >>>>>>> ITK_TEMPLATE_EXPORT >>>>>>> BUG: Add explicit instantiate for ObjectToObjectOptimizerBase >>>>>>> COMP: Use add_definitions for CMake 2.8.9 compatibility >>>>>>> COMP: Add warning suppression for distcc warning >>>>>>> ENH: Explicitly instantiate the optimizer base over float >>>>>>> BUG: Use IsLinear to check if transform is "affine" >>>>>>> ENH: Remove unneeded includes of random iterator header >>>>>>> ENH: Improve thread-safety for Generator, and unique New >>>>>>> sequence >>>>>>> ENH: Do not use global random generator >>>>>>> BUG: Update v3 registration metrics to use local seed >>>>>>> ENH: Prefer setting local seed over global in tests. >>>>>>> ENH: Update SWIG to latest 3.0.11 release >>>>>>> BUG: relax testing parameters for v3 translation registration >>>>>>> BUG: Restore baseline for debug registration >>>>>>> >>>>>>> Caspar Goch (2): >>>>>>> BUG: Use printable type for RGBA pixel ostream for ITK-3501 >>>>>>> STYLE: Remove extra space for ITK-3501 >>>>>>> >>>>>>> Christina Rossmanith (1): >>>>>>> DOC: Added more details to the class Doxygen documentation. >>>>>>> >>>>>>> Davis Vigneault (2): >>>>>>> COMP: VCL_DEFINE_SPECIALIZATION not defined >>>>>>> ENH: Add remote module DVMeshNoise >>>>>>> >>>>>>> D?enan Zuki? (27): >>>>>>> BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) >>>>>>> ENH: Adding MultipleImageIterator as a remote module >>>>>>> COMP: enables TBB 4.4 back-end for VTK7's SMP >>>>>>> COMP: enabling position independent code flag for FFTW >>>>>>> ENH: adding configuration file for code reformatting tool >>>>>>> clang-format >>>>>>> ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 >>>>>>> COMP: Fixing -fPIC flag passing with Ninja build system >>>>>>> ENH: Adding RLEImage as a remote module >>>>>>> ENH: Updating uncrustify configuration to current git version >>>>>>> STYLE: better compliance with ITK style >>>>>>> STYLE: A new option in uncrustify, updating the config file >>>>>>> accordingly >>>>>>> ENH: Adding MorphologicalContourInterpolation as a remote >>>>>>> module >>>>>>> ENH: improving documentation >>>>>>> BUG: fixing buffer growing endlessly, as reported by Timothee >>>>>>> Evain >>>>>>> BUG: fixing buffer growing endlessly, as reported by Timothee >>>>>>> Evain >>>>>>> STYLE: default uncrustify configuration file is less aggressive >>>>>>> COMP: Fixing warning >>>>>>> COMP: VS15 compiler fix >>>>>>> BUG: casting -9 to unsigned produced unwanted result >>>>>>> BUG: Ensuring consistency between debug and release >>>>>>> COMP: Updating LesionSizingToolkit after some recent compile >>>>>>> fixes >>>>>>> COMP: respect option METAIO_USE_NAMESPACE >>>>>>> ENH: updating version of AnisotropicDiffusionLBR >>>>>>> ENH: adding UnsharpMaskingImageFilter >>>>>>> COMP: explicitly cast to output type >>>>>>> BUG: double call to update would cause empty output image >>>>>>> ENH: Updating RLEImage remote module. Change-log: >>>>>>> >>>>>>> Eugene Prilepin (4): >>>>>>> ENH: Add the "ITK_USE_GPU" to ITK Config >>>>>>> BUG: Fix API for set/get "LaplacianImageFilter" object >>>>>>> ENH: Add support of images types with the 'CovariantVector' >>>>>>> pixel type >>>>>>> ENH: Add python test for the 'GradientVectorFlowImageFilter' >>>>>>> wrap >>>>>>> >>>>>>> Francois Budin (52): >>>>>>> ENH: Adding GetArrayFromImage in python itk namespace >>>>>>> ENH: Adding GetImageFromArray in python itk namespace >>>>>>> ENH: *_WRAP_* variable per external module >>>>>>> BUG: ImportImageFilter not responsible of memory management >>>>>>> ENH: New remote module GenericLabelInterpolator >>>>>>> DOC: SetNumberOfOutputs had wrong comment >>>>>>> BUG: lazyAttributes dictionary keys could be over-ridden >>>>>>> BUG: lazyAttributes dictionary keys could be over-ridden >>>>>>> BUG: Fix recent update of HDF5 (1.8.17) >>>>>>> ENH: Update SCIFIO to latest version on 08/23/2016 >>>>>>> ENH: Addition of the remote module >>>>>>> FixedPointInverseDisplacementField >>>>>>> ENH: Update SCIFIO to latest version on 08/29/2016 >>>>>>> BUG: Path to commit was relative instead of absolute >>>>>>> ENH: Path to SetupForDevelopment is relative, not absolute >>>>>>> BUG: LSMImageIO write function was not checking image dimension >>>>>>> BUG: LSMImageIO was not checking correctly image dimension >>>>>>> BUG: Missing associated test data >>>>>>> BUG: Missing associated test data >>>>>>> ENH: Bump CMakeLists.txt version to 4.10.1. >>>>>>> BUG: Quotes are not escaped in configured cmake file >>>>>>> ENH: Improving API of Graft() in itk::Image >>>>>>> ENH: Updating ITKGenericLabelInterpolator remote module >>>>>>> ENH: Update ITKIOTransformDCMTK remote module >>>>>>> BUG: Factory registration should depend on ITK_BUILD_SHARED >>>>>>> COMP: Updating DCMTK compilation for Ninja >>>>>>> ENH: Update version of DCMTK to 3.6.1_20121012 >>>>>>> ENH: Update SCIFIO to latest version on 10/25/2016 >>>>>>> BUG: Swig and PCRE do not support space in installation paths >>>>>>> BUG: exit() call from within piped commands was not exiting the >>>>>>> script >>>>>>> BUG: Typo in folder creation command >>>>>>> ENH: Only display message for transform registered multiple >>>>>>> times in debug >>>>>>> ENH: Image spacing must be positive >>>>>>> BUG: Supported extensions by PNG IO were not added in >>>>>>> constructor. >>>>>>> DOC: Documentation in itkRBGAPixel and itkRGBPixel was >>>>>>> incorrect. >>>>>>> ENH: Update SCIFIO to lastest (2016.12.01) >>>>>>> ENH: FixedPointInverseDisplacementField moved to >>>>>>> InsightSoftwareConsortium >>>>>>> COMP: Remove compilation warnings >>>>>>> ENH: Improved support of ccache and distcc >>>>>>> BUG: GPUImage regression due to API change. >>>>>>> ENH: Update Bridge Numpy (2016.12.05) >>>>>>> ENH: Update VariationalRegistration to remove warnings during >>>>>>> compilation >>>>>>> ENH: FindPythonLibs does not support both debug and release >>>>>>> python libraries >>>>>>> ENH: Update VariationalRegistration >>>>>>> BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of >>>>>>> itk::ImageBase >>>>>>> BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper >>>>>>> BUG: Missing ITK_TEMPLATE_EXPORT in templated class >>>>>>> BUG: Remove linkage warnings on MacOS >>>>>>> BUG: HDF5 CMake installation directory variable had not been >>>>>>> updated >>>>>>> BUG: Missing include header in AnisotropicDiffusionBLR remote >>>>>>> module hxx files >>>>>>> COMP: Silencing unused variable warning in itkTimeStamp >>>>>>> STYLE: Improve style checking by using module >>>>>>> ITKKWStyleOverwrite.txt >>>>>>> COMP: OS*Barrier functions are deprecated on MacOS 10.12 >>>>>>> >>>>>>> GCC-XML Upstream (1): >>>>>>> ENH: pygccxml v1.8.0 (reduced) >>>>>>> >>>>>>> Gert Wollny (1): >>>>>>> BUG: Relax vnl_complex floating point comparisons for i386 >>>>>>> >>>>>>> Gilles Filippini (1): >>>>>>> BUG: Use NATIVE_HBOOL for encoding HDF5 types. >>>>>>> >>>>>>> HDF Group (1): >>>>>>> ENH: hdf5 1.8.17-r30218 (reduced) >>>>>>> >>>>>>> Hans Johnson (23): >>>>>>> COMP: Use cmake WriteCompilerDetectionHeader >>>>>>> ENH: Use itk_compiler_detection versions >>>>>>> COMP: Need ITK_NOEXCEPT_OR_THROW macro. >>>>>>> COMP: Provide consistent granular C++11 support >>>>>>> STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT >>>>>>> STYLE: Prefer to use consistent definitions >>>>>>> COMP: Improve robustness of identifying the compiler standard >>>>>>> used >>>>>>> BUG: try_compile for AlignAs were always failing >>>>>>> STYLE: Provide a well documented macro for repeated code >>>>>>> STYLE: Delete functions in consistent way >>>>>>> COMP: GPU baseclass ivars need to be protected >>>>>>> COMP: Remove unnecessary circular dependancy >>>>>>> COMP: Add long long usage for HDF5 >>>>>>> COMP: Add long long usage for HDF5 >>>>>>> STYLE: Prefer static small array to dynamic array >>>>>>> BUG: Confusing interface for FFTW wisdom files >>>>>>> STYLE: Output dimension from OutputImageType >>>>>>> STYLE: Code review style cleanups >>>>>>> STYLE: Prefer to use ITK AssertOrThrow macros >>>>>>> ENH: Add OverrideBoundaryCondition logic >>>>>>> ENH: Provide mechanism for enhanced NIFTI support >>>>>>> BUG: Use NIFTI sform/qform conventions correctly >>>>>>> ENH: Remove ambiguity about sform/qform >>>>>>> >>>>>>> Hastings Greer (8): >>>>>>> BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically >>>>>>> BUG: make itkTriangleHelper instantiable to ease wrapping >>>>>>> BUG: remove lsqr because of license issues ITK 1160 >>>>>>> BUG: make itkTriangleHelper instantiable to ease wrapping >>>>>>> BUG: initialize X to zero in lsmr Solve >>>>>>> BUG: Labled Point Set Registration: test multiple labels >>>>>>> BUG: Fix python wrapping of Cuberille remote module >>>>>>> BUG: Add test demonstrating Python global timestamp issue >>>>>>> >>>>>>> Jean-Christophe Fillion-Robin (5): >>>>>>> STYLE: UseITK: Set ImageIO exceptions using new convention. See >>>>>>> #3393 >>>>>>> STYLE: MeshIO: Moves virtual destructor into cpp files. See >>>>>>> #3393 >>>>>>> STYLE: Update MeshIO factories to use RegisterFactoryInternal. >>>>>>> See #3393 >>>>>>> STYLE: MeshIO: Move MeshFileWriterException into its own file. >>>>>>> See #3393 >>>>>>> STYLE: MeshIO: Remove unused include from headers. See #3393 >>>>>>> >>>>>>> Johan Andruejol (3): >>>>>>> ENH: Add missing itkKernelFunctionBase wrapping >>>>>>> ENH: Add PrincipalComponentsAnalysis remote module >>>>>>> COMP: Override cannot be used with inline >>>>>>> >>>>>>> Jon Haitz Legarreta (216): >>>>>>> ENH: Improve itkFlatStructutingElement coverage. >>>>>>> ENH: Improve itkPathToImageFilter class coverage. >>>>>>> ENH: Improve itkIsolatedWatershedImageFilter coverage. >>>>>>> ENH: Improve itkLogSigmoidTransferFunction coverage. >>>>>>> STYLE: Improve itkBSplineTransform doc style. >>>>>>> ENH: Improve GaborKernelFunctionCoverage. >>>>>>> PERF: Remove duplicate itkMath include >>>>>>> STYLE: Move the PrintSelf method to the end >>>>>>> STYLE: Improve the itkScalarToRGBColormapImageFilter style. >>>>>>> STYLE: Delete duplicate method documentation >>>>>>> STYLE: Remove method documentation from implementation file >>>>>>> STYLE: Improve GACLevelSet classes' style >>>>>>> STYLE: Improve test style >>>>>>> ENH: Improve itkGaussianDerivativeImageFilter coverage. >>>>>>> ENH: Improve the itkScalarToRGBColormapImageFilter coverage >>>>>>> STYLE: Improve itkScalarToRGBColormap test style >>>>>>> ENH: Improve GACLSImageFilter classes' coverage >>>>>>> STYLE: Improve comment style in GACLS tests >>>>>>> ENH: Improve itkImportImageFilter coverage >>>>>>> ENH: Improve itkVideoFileReader coverage >>>>>>> ENH: Improve itkVideoFileWriter coverage >>>>>>> STYLE: Improve the itkVideoFileWriter style. >>>>>>> STYLE: Imrpove itkVideoFileReader style. >>>>>>> ENH: Improve the itkBSplineControlPointImageFunction coverage >>>>>>> STYLE: Improve the itkIntensityWindowingImageFilter style >>>>>>> STYLE: Improve the itkIntensityWindowingImageFilter test style >>>>>>> ENH: Improve ImageToSpatialObjectRegistrationMethod coverage >>>>>>> STYLE: Improve test style >>>>>>> ENH: Improve MaskNeighborhoodOperatorImageFilter coverage >>>>>>> ENH: Improve itkMeshFileWriter coverage >>>>>>> ENH: Improve RescaleIntensityImageFilter coverage. >>>>>>> ENH: Improve itkClampImageFilter coverage. >>>>>>> BUG: Fix ivar type casting in PrintSelf. >>>>>>> STYLE: Improve MRIBiasFieldCorrectionFilter style. >>>>>>> ENH: Improve MRIBiasFieldCorrectionFilter coverage. >>>>>>> ENH: Improve itkIntensityWindowingImageFilter coverage >>>>>>> BUG: Fix Run-time type information in CSV module classes. >>>>>>> ENH: Improve the itkHistogram class code coverage. >>>>>>> DOC: Fix documentation typo. >>>>>>> STYLE: Improve the ImproveRescaleIntensityImageFilter style. >>>>>>> PERF: Make the itkVideoFileReader ivars private >>>>>>> PERF: Make itkVideoFileWriter ivars private >>>>>>> ENH: Improve coverage for itk::OrientImageFilter. >>>>>>> STYLE: Improve itk::OrientImageFilter class style. >>>>>>> ENH: Improve itkCSVNumericObjectFileWriter coverage. >>>>>>> ENH: Add missing standard class typdefs. >>>>>>> ENH: Improve itkVoronoiSegmentationImageFilter coverage. >>>>>>> ENH: Improve itkVoronoiSegmentationImageFilter style. >>>>>>> STYLE: Improve the MalahanobisDistanceThresholdImageFunction >>>>>>> style. >>>>>>> ENH: Improve coverage for itkMalahanobisDistanceThreshold. >>>>>>> ENH: Improve itk::MinimumMaximumImageCalculator coverage. >>>>>>> ENH: Improve itkMinimumMaximumImageCalculator style. >>>>>>> BUG: Fix type mismatch in test. >>>>>>> STYLE: Improve itkPolylineMaskImagefilter style. >>>>>>> ENH: Improve itkPolylineMaskImageFilter coverage. >>>>>>> ENH: Improve itkFileListVideoStyle. >>>>>>> ENH: Improve itkLandmarkBasedTransformInitializer coverage. >>>>>>> ENH: Add baseline image to itkPolylineMaskImageFilter test. >>>>>>> ENH: Improve coverage for itkBSplineTransformInitializer. >>>>>>> STYLE: Improve itkBSplineTransformInitializer doc style. >>>>>>> ENH: Enhance itkBSplineTransformInitializer implementation. >>>>>>> DOC: Fix typo in method documentation. >>>>>>> ENH: Improve the itkRegularStepGradientDescentOptimizerv4 >>>>>>> style. >>>>>>> STYLE: Improve the itkSimpleContourExtractorImageFilter style. >>>>>>> ENH: Exercise the class' Get methods. >>>>>>> ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. >>>>>>> ENH: Improve style for itkThresholdLabelerImageFilter. >>>>>>> ENH: Improve itkThresholdLabelerImageFilter coverage. >>>>>>> ENH: Get internal ImageIO via a const macro. >>>>>>> ENH: Improve the itkSimpleContourExtractorImageFilter coverage. >>>>>>> STYLE: Improve the itkMetaArray class style. >>>>>>> ENH: Improve MetaArrayReader/Writer coverages. >>>>>>> ENH: Improve the itkCovarianceImageFunction style. >>>>>>> STYLE: Improve itkVoronoiDiagram2DGenerator style. >>>>>>> ENH: Improve VoronoiDiagram2DGenerator coverage. >>>>>>> STYLE: Improve the itkBayesianClassifierImageFilter style. >>>>>>> STYLE: Improve the itkMetaArrayWriter style. >>>>>>> ENH: Improve itkCovarianteImageFunction coverage. >>>>>>> COMP: Fix signed/unsigned int comparison warning. >>>>>>> DOC: Improve itkGrayscaleDilateImageFilter documentation. >>>>>>> DOC: Improve documentation for itkGrayscaleErodeImageFilter. >>>>>>> DOC: Improve ConfigureHistogram method documentation. >>>>>>> STYLE: Improve the itkMovingHistogramMorphologyImagefilter >>>>>>> style. >>>>>>> BUG: Fix Superclass name in RTTI. >>>>>>> STYLE: Improve itkGaussianInterpolateImageFunction style. >>>>>>> ENH: Improve coverage for itkGaussianInterpolateImageFunction. >>>>>>> ENH: Improve itkBayesianClassifierImageFilter coverage. >>>>>>> ENH: Add itkBSplineControlPointImageFilter RTTI. >>>>>>> STYLE: Improve itkBSplinecontrolPointImageFilter style. >>>>>>> ENH: Improve itkBSplineControlPointImageFilter coverage. >>>>>>> ENH: Improve coverage for itkRegularStepGradientDescentO >>>>>>> ptimizerv4. >>>>>>> STYLE: Improve the class implementation file style. >>>>>>> STYLE: Improve the itkResampleImageFilter style. >>>>>>> DOC: Fix typo in GetMTime method doc. >>>>>>> STYLE: Remove out-of-body implementation doc >>>>>>> ENH: Improve itkResampleImageFilter coverage. >>>>>>> ENH: Improve itkAbsImageAdaptor and Filter coverage. >>>>>>> BUG: Fix itkLSMImageIO class' Superclass name. >>>>>>> ENH: Improve the itkInterpolateImagePointsFilter coverage. >>>>>>> ENH: Improve itkPowImageFilter coverage. >>>>>>> BUG: Fix ConvolutionImageFilter RTTI. >>>>>>> STYLE: Use initialization lists. >>>>>>> STYLE: Improve BinaryFunctorImageFilter style. >>>>>>> ENH: Improve itkMinimumImageFilter code coverage. >>>>>>> BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. >>>>>>> ENH: Improve MaximumImageFilter coverage. >>>>>>> BUG: Fix conversion to PixelType conversion. >>>>>>> COMP: Fix double to unsigned char conversion warning. >>>>>>> ENH: Improve coverage for itkNormalizeToConstantImageFilter. >>>>>>> BUG: Fix itkSquaredDifferenceErrorFunction RTTI. >>>>>>> ENH: Improve itkMeanImageFunctionCoverage. >>>>>>> ENH: Improve itkSquareImageFilter coverage. >>>>>>> STYLE: Improve the itkSquaredDifferenceErrorFunction style. >>>>>>> STYLE: Enhance style for itkNormalizeToConstantImageFilter. >>>>>>> STYLE: Improve itkMeanImageFunction style. >>>>>>> ENH: Remove unnecesary call to filter print. >>>>>>> ENH: Improve itkRegionOfInterestImageFilter coverage. >>>>>>> STYLE: Improve itkRegionOfInterestImageFilter style. >>>>>>> STYLE: Improve itkPasteImageFilter style. >>>>>>> STYLE: Improve itkJoinSeriesImageFilter style. >>>>>>> BUG: Fix itkPadLabelMapFilter RTTI Superclass. >>>>>>> COMP: Address std::cout.precision conversion warning. >>>>>>> ENH: Improve itkBayesianClassifiertImageFilter coverage. >>>>>>> ENH: Improve itkPadLabelMapFilter coverage. >>>>>>> ENH: Improve itkJoinSeriesImageFilter coverage. >>>>>>> ENH: Improve the itkPasteImageFilter coverage. >>>>>>> ENH: Improve MeanImageFilter coverage. >>>>>>> COMP: Address std::cout.precision conversion warning. >>>>>>> ENH: Improve TernaryMagnitudeImageFilter coverage. >>>>>>> ENH: Improve FFTConvolutionImageFilter coverage. >>>>>>> DOC: Fix class documentation in ternary magnitude filters. >>>>>>> ENH: Improve ConstrainedValueDifferenceImageFilter coverage. >>>>>>> ENH: Improve AndImageFilter coverage. >>>>>>> ENH: Add baseline test to itkTernaryMagnitudeImageFilter. >>>>>>> ENH: Use MD5 comparison framework in baseline test. >>>>>>> ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. >>>>>>> STYLE: Improve the itkVectorRescaleIntensityImageFilter style. >>>>>>> ENH: Print missing ivar in filter PrintSelf method. >>>>>>> ENH: Improve itkComplexToImaginaryFilter coverage. >>>>>>> ENH: Improve itkComplexToPhaseImageFilter coverage. >>>>>>> ENH: Improve itkComplexToModulusImageFilter coverage. >>>>>>> ENH: Improve itkComplexToRealImageFilter coverage. >>>>>>> ENH: Improve itkVectorResampleImageFilter coverage. >>>>>>> ENH: Add GetTransform method. >>>>>>> ENH: Improve itkConstrainedValueAdditionImageFilter coverage. >>>>>>> ENH: Improve itkModulusImageFilter coverage. >>>>>>> ENH: Improve itkLog10ImageFilter coverage. >>>>>>> ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. >>>>>>> ENH: Improve itkLogImageFilter coverage. >>>>>>> ENH: Improve itkInvertIntensityImageFilter coverage. >>>>>>> STYLE: Improve itkInvertIntensityImageFilter style. >>>>>>> DOC: Add missing doc to itkInvertIntensityImageFilter. >>>>>>> STYLE: Improve itkIntensityWindowingImageFilter style. >>>>>>> STYLE: Use initialization lists. >>>>>>> ENH: Improve itkIntensityWindowingImageFilter coverage. >>>>>>> ENH: Improve itkNaryMaximumImageFilter coverage. >>>>>>> COMP: Fix std::precision type casting warning. >>>>>>> ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. >>>>>>> STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod >>>>>>> style. >>>>>>> ENH: Remove SmartPointers being explicitly initialized to null. >>>>>>> STYLE: Improve the itkPointSetToImageRegistrationMethod style. >>>>>>> ENH: Improve itkPointSetToImageRegistration coverage. >>>>>>> STYLE: Change the name of the itkPointSetToImageRegistrationMethod >>>>>>> test. >>>>>>> STYLE: Improve itkVectorResampleImageFilter style. >>>>>>> STYLE: Improve the itkAntiAliasBinaryImageFilter style. >>>>>>> ENH: Improve trigonometric function filters' coverage. >>>>>>> STYLE: Remove test names from std::out messages. >>>>>>> ENH: Improve Boolean Algebra ImageFilters coverage. >>>>>>> STYLE: Improve the EuclideanDistancePointMetric style. >>>>>>> ENH: Improve itkSigmoidImageFilter coverage. >>>>>>> STYLE: Improve itkCropImageFilter style. >>>>>>> ENH: Improve itkCropImageFilter coverage. >>>>>>> ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. >>>>>>> ENH: Improve itkRescaleIntensityImageFilter coverage. >>>>>>> ENH: Improve the itkMatrixSelectionImageFilter coverage. >>>>>>> ENH: Improve itkTanImageFilter and Adaptor coverage. >>>>>>> ENH: Increase itkSqrtImageFilter and Adaptor coverage. >>>>>>> ENH: Increase itkTernaryOperatorImageFilter coverage. >>>>>>> ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. >>>>>>> STYLE: Improve itkScalarImagekmeansImageFilter style. >>>>>>> STYLE: Conform to TEST_SET_GET_VALUE definition. >>>>>>> BUG: Fix uninitialized variable due to dynamic analysis defect. >>>>>>> BUG: Fix uninitialized variable defect reported by valgrind. >>>>>>> ENH: Improve the itkPointSetToPointSetRegistrationTest. >>>>>>> ENH: Improve the itkPointSetToImageRegistrationTest. >>>>>>> ENH: Increas BinaryMagnitudeImageFilter coverage. >>>>>>> STYLE: Remove test name from std output. >>>>>>> ENH: Increase MagnitudeImageFilter coverage. >>>>>>> BUG: Fix uninitialized variable defect reported by valgrind. >>>>>>> BUG: Fix Superclass name in RTTI. >>>>>>> STYLE: Improve itkFrustumSpatialFunction style. >>>>>>> STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction >>>>>>> style. >>>>>>> BUG: Fix Superclass template argument list. >>>>>>> STYLE: Improve the itkTorusInteriorExteriorSpatialFunction >>>>>>> style. >>>>>>> STYLE: Improve the itkCheckerBoardImageFilter class style. >>>>>>> ENH: Improve the itk::LabelVotingImageFilter coverage. >>>>>>> ENH: Improve itkCheckerBoardImageFilter coverage. >>>>>>> STYLE: Improve itk::LabelVotingImageFilter style. >>>>>>> STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. >>>>>>> ENH: Add test for itk::FrustumSpatialFunction class. >>>>>>> ENH: Improve itkConnectedThresholdImageFilter coverage. >>>>>>> STYLE: Improve itkConnectedThresholdImageFilter style. >>>>>>> BUG: Fix FrustumSpatialFunction internal precision conversion. >>>>>>> COMP: Fix implicit conversion warning. >>>>>>> STYLE: Improve itkThresholdImageFilter style. >>>>>>> ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. >>>>>>> BUG: Fix Superclass template argument list. >>>>>>> ENH: Improve itkUnsharpMaskingImageFilter implementation. >>>>>>> ENH: Improve the itkUnsharpMaskingImageFilter coverage. >>>>>>> ENH: Fix UnsharpMaskingImageFilter test inconsistencies. >>>>>>> BUG: Add missing itkTypeMacro. >>>>>>> DOC: Document the member variables. >>>>>>> BUG: Fix the itkImageSource RTTI class name, >>>>>>> STYLE: Improve itkLabelImageGaussianInterpolateImageFunction >>>>>>> style. >>>>>>> ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. >>>>>>> STYLE: Improve itkLabelOverlapMeasurementImageFilter style. >>>>>>> >>>>>>> KWSys Robot (6): >>>>>>> KWSys 2016-06-30 (96f06c8e) >>>>>>> KWSys 2016-10-23 (b630d2f5) >>>>>>> KWSys 2016-11-03 (37306a1c) >>>>>>> KWSys 2016-11-08 (2b3e2b1c) >>>>>>> KWSys 2016-11-09 (18c65411) >>>>>>> KWSys 2016-11-21 (cb55cf5a) >>>>>>> >>>>>>> Maeliss Jallais (1): >>>>>>> BUG: Add unsigned and signed short to the wrapping of vnl_matrix >>>>>>> >>>>>>> Matthew McCormick (85): >>>>>>> PERF: Simplify HilbertPath numberOfPathVertices computation. >>>>>>> BUG: CID 1355469 NNetClassifierTest4 unintended integer >>>>>>> division. >>>>>>> BUG: Update Cuberille Remote for version check fix. >>>>>>> ENH: Bump ITK version to 4.11.0. >>>>>>> BUG: Fix HDF5ImageIO type information. >>>>>>> BUG: Fix H5File memory leak in HDF5ImageIO. >>>>>>> DOC: Collect Francois Budin's contributions in .mailmap >>>>>>> BUG: Limit WRAP_ITK_MODULES when building externally >>>>>>> STYLE: Improvements to ResourceProbe report output. >>>>>>> ENH: Add a useTabs argument to ResourceProbe::Report. >>>>>>> ENH: Add standard error measure to the ResourceProbe >>>>>>> ENH: Add itk_python_add_test function. >>>>>>> BUG: Remove VNL file from subtree merge. >>>>>>> COMP: Fix wrapping with a space in the Python include path >>>>>>> BUG: Fix PermuteAxesImageFilter pipeline method visibility >>>>>>> BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter >>>>>>> BUG: ResampleImageFilter honor isInside output of the transform >>>>>>> method >>>>>>> COMP: Avoid recursive include of itkMath.h >>>>>>> COMP: Fix VXL header installation locations >>>>>>> BUG: ClampImageFilterTest for older GCC, InPlaceOn >>>>>>> DOC: Add CONTRIBUTING.md file to the top level. >>>>>>> COMP: Update VariationalRegistration to address Doxygen warnings >>>>>>> BUG: Compiler detections file installed into ITK build tree >>>>>>> location >>>>>>> COMP: Do not use string(TIMESTAMP. >>>>>>> COMP: Remove HDF5 -std=c99 for C++ files >>>>>>> BUG: Do not build HDF5 static library with a shared build >>>>>>> ENH: Add PerformanceBenchmarking Remote Module >>>>>>> COMP: Remove duplicate wrappings for ResampleImageFilter >>>>>>> BUG: Put Python test output files in the build tree >>>>>>> BUG: Improve HDF5ImageIO::CloseDataSet name >>>>>>> COMP: Use add_python_test PythonLazyLoadingImage >>>>>>> COMP: Address missing override it itkFactoryTestLib.cxx >>>>>>> BUG: Index,Size,Offset constructors present in Python with C++11 >>>>>>> COMP: Address missing override it itkFactoryTestLib.cxx >>>>>>> BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT >>>>>>> ENH: Bump SetupForDevelopment version >>>>>>> BUG: Add missing ZLib deflate support to HDF5 >>>>>>> BUG: Address memory leak, remove NumPy build dep in BridgeNumPy >>>>>>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >>>>>>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >>>>>>> BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include >>>>>>> ITK_WRAP_IMAGE_DIMS >>>>>>> BUG: RichardsonLucyDeconvolutionImageFilter with non-null input >>>>>>> Image Origin >>>>>>> BUG: Fix inconsistent Twister start with Initialize(seed) and >>>>>>> SetSeed(seed) >>>>>>> BUG: Do not hard code CMake scripts in HDF5 >>>>>>> COMP: Workaround Emscripten ITKCommon test build failure >>>>>>> COMP: Do embed fancy HDF5 libsettings with Emscripten >>>>>>> COMP: Add missing H5T_patch_vlen_file declaration >>>>>>> ENH: Bump CastXML to 2016-10-11 master. >>>>>>> COMP: Workaround Emscripten ITKCommon test build failure >>>>>>> BUG: Swap CastXML hashes for Mac OSX and Windows >>>>>>> ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 >>>>>>> COMP: Fix VNL tests when cross-compiling >>>>>>> ENH: ExternalData multi-algorithm support >>>>>>> ENH: ExternalData support for data.kitware.com >>>>>>> BUG: Install missing H5pubconf.h >>>>>>> BUG: Use SpacePrecisionType in TileImageFilter >>>>>>> BUG: Use internal ExternalData_Add_Target >>>>>>> ENH: Run .sha512, .md5 simultaneous modification pre-commit >>>>>>> check >>>>>>> BUG: Correct CastXML Windows binary >>>>>>> BUG: Support non-zero Index in LevelSetNeighborhoodExtractor >>>>>>> ENH: Add ArchiveTestingDataOnGirder.py >>>>>>> BUG: Correct AtanRegularizationHeavisideStepFunction derivative >>>>>>> ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh >>>>>>> BUG: Remove extra HessianToObjectness content links >>>>>>> ENH: Wrap SpatialFunction float types with ITK_WRAP_float >>>>>>> BUG: Bump PerformanceBenchmarking to 2016-11-04 >>>>>>> BUG: itk_python_expression_add_test too many quotes. >>>>>>> ENH: Wrap VectorImage with complex real pixel types >>>>>>> ENH: Bump PerformanceBenchmarking to 2016-11-07 >>>>>>> BUG: Do not assume zero Index in ReinitializeLevelSetImageFilte >>>>>>> r >>>>>>> ENH: Create itk_module_add_library macro >>>>>>> BUG: Update computeCodeCoverageLocally.sh for KWStyle addition >>>>>>> COMP: Install a newer version of CMake on CircleCI >>>>>>> ENH: Use GitHub Pages as the first ExternalData resource >>>>>>> ENH: Add tests to demonstrate OSX dynamic_cast failure >>>>>>> BUG: Use random seed with for MersenneTwisterRandomVariateGe >>>>>>> nerator. >>>>>>> BUG: Enable program global timestamp >>>>>>> BUG: Set random number seed in Mattes metric test >>>>>>> BUG: Notify builder that ITK_DYNAMIC_LOADING is required with >>>>>>> wrapping >>>>>>> BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON >>>>>>> BUG: Set random number seed mutual information metric tests >>>>>>> BUG: Wrap std::vector< itk.Point > >>>>>>> BUG: Fix wrapping of LandmarkBasedTransformInitializer >>>>>>> BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter >>>>>>> DOC: Add D?enan Zuki? to .mailmap >>>>>>> >>>>>>> Max Smolens (4): >>>>>>> COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar >>>>>>> field >>>>>>> BUG: CID-1355438 QuadEdgeTest1 resource leaks >>>>>>> COMP: CID-1355472 MIRegistrationFunction unused value >>>>>>> COMP: Fix link errors for VNL template instantiations on Windows >>>>>>> >>>>>>> Mayeul Chassagnard (7): >>>>>>> BUG: Test added and error fixed in HDF5ImageIO >>>>>>> ENH: Update add_library TO itk_module_add_library >>>>>>> COMP: Set Policy CMP0023 target_link_libraries for >>>>>>> Modules/ThirdParty/VNLI... >>>>>>> BUG: Add ITK_TEMPLATE_EXPORT to template classes >>>>>>> BUG: Fix errors linked to dyn_cast merge >>>>>>> BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for >>>>>>> classes >>>>>>> BUG: dash3win7 dashboard build error unresolved external symbol >>>>>>> >>>>>>> Michka Popoff (3): >>>>>>> ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 >>>>>>> ENH: Update igenerator.py for pygccxml v1.8.0 >>>>>>> COMP: Use pygccxml's public API for apply definitions >>>>>>> >>>>>>> Pierre Barbier de Reuille (2): >>>>>>> COMP: Fix function naming error when using FFTWD >>>>>>> COMP: Fix function naming error when using FFTWD >>>>>>> >>>>>>> Sean McBride (1): >>>>>>> COMP: Bypass HDF5 bugs under TSan >>>>>>> >>>>>>> Simon Rit (2): >>>>>>> COMP: remove C++11 compiler warning for CUDA compilations >>>>>>> COMP: remove C++11 compiler warning for CUDA compilations >>>>>>> >>>>>>> Somesh Kashyap (2): >>>>>>> BUG: Override TransformCategoryType for >>>>>>> AzimuthElevationToCartesianTransform >>>>>>> BUG: -Added test case for itkAzimuthElevationToCartesian >>>>>>> Transform >>>>>>> >>>>>>> Sumedha Singla (1): >>>>>>> ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote >>>>>>> module >>>>>>> >>>>>>> Taylor Braun-Jones (4): >>>>>>> COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is >>>>>>> enabled >>>>>>> COMP: Fix truncation from double to float warning >>>>>>> DOC: Fix incorrect itkFactorylessNewMacro documentation >>>>>>> COMP: Only include the headers for required OpenCV modules >>>>>>> >>>>>>> Thien Nguyen (1): >>>>>>> PERF: SmapsFileParser unnecessary dynamic_cast >>>>>>> >>>>>>> VXL Maintainers (4): >>>>>>> VNL 2016-05-15 (14f97ab4) >>>>>>> VNL 2016-06-22 (23a93adb) >>>>>>> VNL 2016-06-29 (d62a2d70) >>>>>>> VNL 2016-07-06 (acfa62cc) >>>>>>> >>>>>>> Vladimir S. FONOV (1): >>>>>>> COMP: Build against GCC 5.3.1 >>>>>>> >>>>>>> Zach Williamson (2): >>>>>>> ENH: Update Remote Module Tags >>>>>>> BUG: Fix Python Wrappings in C++11 >>>>>>> >>>>>>> Ziv Yaniv (1): >>>>>>> BUG: Metric sampling percentage accepted values outside (0.0, >>>>>>> 1.0]. >>>>>>> >>>>>>> >>>>>>> ITK Software Guide Changes >>>>>>> ---------------------------------------- >>>>>>> >>>>>>> Matt McCormick (8): >>>>>>> DOC: Move the location for obtaining the software >>>>>>> DOC: Remove reference to ITKApps >>>>>>> ENH: Bump ITK ExternalProject version to 2016-11-02 master >>>>>>> DOC: Document the ITK module registry >>>>>>> ENH: Bump ITK ExternalProject version to v4.11rc01 master >>>>>>> DOC: Update CMake hyperlinks >>>>>>> DOC: Update minimum required CMake version to 2.8.9 >>>>>>> DOC: Add section on static and shared libraries. >>>>>>> >>>>>>> >>>>>>> ITK Sphinx Examples Changes >>>>>>> ------------------------------------------- >>>>>>> >>>>>>> Matt McCormick (6): >>>>>>> BUG: Use GDCM ITK module name >>>>>>> ENH: Rename ReadDICOMSeriesAndWrite3DImage >>>>>>> BUG: Add tests for ReadDICOMSeriesAndWrite3DImage >>>>>>> ENH: Bump ITK Superbuild version to 2016-09-20 master >>>>>>> ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage >>>>>>> ENH: Add Python version of CreateAnRGBImage >>>>>>> >>>>>>> Michka Popoff (5): >>>>>>> ENH: Use same Python interpreter as ITK for wrapping tests >>>>>>> BUG: Fix ResampleAnImage example (Python3) >>>>>>> ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRe >>>>>>> gionOfAnImage >>>>>>> ENH: Add 7 Python examples to Core/Common >>>>>>> ENH: Add BoundingBoxOfAPointSet Python example >>>>>>> >>>>>>> >>>>>>> ----------------------------------------------------- >>>>>>> Errors or omissions? Please fix them here: >>>>>>> >>>>>>> >>>>>>> https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFr >>>>>>> A54KRvf__4oeT0ymzZg/edit >>>>>>> _______________________________________________ >>>>>>> Powered by www.kitware.com >>>>>>> >>>>>>> Visit other Kitware open-source projects at >>>>>>> http://www.kitware.com/opensource/opensource.html >>>>>>> >>>>>>> Kitware offers ITK Training Courses, for more information visit: >>>>>>> http://kitware.com/products/protraining.php >>>>>>> >>>>>>> Please keep messages on-topic and check the ITK FAQ at: >>>>>>> http://www.itk.org/Wiki/ITK_FAQ >>>>>>> >>>>>>> Follow this link to subscribe/unsubscribe: >>>>>>> http://public.kitware.com/mailman/listinfo/insight-developers >>>>>>> >>>>>> >>>>>> >>>>>> _____________________________________ >>>>>> Powered by www.kitware.com >>>>>> >>>>>> Visit other Kitware open-source projects at >>>>>> http://www.kitware.com/opensource/opensource.html >>>>>> >>>>>> Kitware offers ITK Training Courses, for more information visit: >>>>>> http://www.kitware.com/products/protraining.php >>>>>> >>>>>> Please keep messages on-topic and check the ITK FAQ at: >>>>>> http://www.itk.org/Wiki/ITK_FAQ >>>>>> >>>>>> Follow this link to subscribe/unsubscribe: >>>>>> http://public.kitware.com/mailman/listinfo/insight-users >>>>>> >>>>>> >>>>> >>>> >>> >> > -------------- next part -------------- An HTML attachment was scrubbed... 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