[ITK-dev] [ITK-users] [ANN] ITK 4.13 Release Candidate 2 is ready for testing!

Francois Budin francois.budin at kitware.com
Wed Dec 13 20:03:57 EST 2017


On behalf of the Insight Toolkit community, we are proud to announce that
ITK 4.13 release candidate 2 has been tagged and is available for testing!
Please take this opportunity to test the new features in the release
candidate.

To obtain the source code, use the links:

 https://github.com/InsightSoftwareConsortium/ITK/archive/v4.13rc02.zip

 https://github.com/InsightSoftwareConsortium /ITK/archive/v4.13rc02.tar.gz
<https://github.com/InsightSoftwareConsortium/ITK/archive/v4.13rc02.tar.gz>

A few selected highlights for this release:

- ITK is on PyPI: Install ITK Python with: `pip install itk`

- New external module IsotropicWavelets: This module implements a
multiresolution (MRA) analysis framework using isotropic and steerable
wavelets in the frequency domain. This framework provides the backbone for
state of the art filters for denoising, feature detection or phase analysis
in N-dimensions. It focuses on reusability, and highly decoupled modules
for easy extension and implementation of new filters, and it contains a
filter for multiresolution phase analysis,

- ITK Python filters are now callables which allows the usage of ITK in a
procedural way: It is possible to run filters without have to declare the
filter object first, and without calling explicitly ‘Update()’.

- ‘long long’ pixel type support has been added which allows support of 64
bits images on Windows.

- Availability of GoogleTest for testing in ITK: a module can be tested
with the GoogleTest as opposed to the classic ITKTestDriver.

- Improved factory registration: Each module (even remote ones) lists the
factories and format they support. This information is used to
automatically register all formats supported by modules loaded during
configuration. It is also now possible to not list each factory
individually, but to directly load them all for each factory type (e.g.
ImageIO, TransformIO). To load all components of a factory, add the
component `ITK<factory>` in the list of requested components. Here is an
example to find ITK with ITKCommon and all the image and transform IOs that
are available:

 `find_package(ITK COMPONENTS ITKCommon ITKImageIO ITKTransformIO REQUIRED)`

- ITK's thread pool has been refactored for improved performance. To test
the thread pool, set the environment variable: ITK_USE_THREADPOOL=1. Or
call static method itk::MultiThreader::SetGlobalDefaultUseThreadPool(true);
in the beginning of your application. The thread pool is still
experimental, and its implementation and interface will be improved and
modified in the near future.


Please test the release candidate and share your experiences on Discourse,
the issue tracker, and Gerrit Code Review [1].

An Experimental build, which demonstrates how the test suite performs on
your local build system, can be submitted to the dashboard [2] with:

 mkdir ../ITK-build

 cd ../ITK-build

 cmake ../ITK

 ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit

Visual Studio builds must also add “-C Release” to the ctest command.

Please leave a comment in the announcement topic on discourse or notify the
mailing list if there are any unexpected failures.  Testing your own
applications against the RC is also appreciated.

Congratulations to the 26 contributors to this release. We would especially
like to recognize the new contributors: Laura Pascal, Beatriz Paniagua,
Rene-Paul Debroize, Edwin Bennink, David Kügler, Adrien Bailly, and Steve
Pieper.


The 4.13.0 final release is scheduled for December 18th 2017.


[1]
https://github.com/InsightSoftwareConsortium/ITK/blob/master/CONTRIBUTING.md

[2] http://open.cdash.org/index.php?project=Insight


New Features

------------------

* Wrapping Improvements

- Binary Python packages are now available for Linux, macOS, and Windows.
Install with:

    - pip install --upgrade pip

    - pip install itk

- Add wrapping for several classes: MultiResolutionIterationEvent,
RegionOfInterestFilter for VectorImage's, FloatingPointExceptions,
CorrelationMetricv4, DemonsMetricv4, JointHistogramMIMetricv4, ITKIOMesh.

- Enable __call__() function in Python for itkTemplate objects to make ITK
more Pythonic. Developer can run instantiate, run a filter, and get the
output, in one single command.

- Python docstrings are generated from the C++ doxygen documentation and
directly integrated in the Python modules.

- Support installs each module Python wrapping independently

- Update Bruker IO wrapping after migration from ITKReview

* New Remote Modules

- SimpleITKFilters

 - The filters in this module may be wrappers of composites ITK filters,
adapters of existing ITK filters or alternative implementations designed
for SimpleITK's requirements.

 - http://github.com/SimpleITK/ITKSimpleITKFilters

- TextureFeatures

 - Filters to estimate texture feature maps from N-dimensional grayscale
images.

 - http://hdl.handle.net/10380/3574

- IsotropicWavelets

 - An ITK-based implementation of steerable isotropic wavelet transforms
for multiscale phase analysis.

 - http://hdl.handle.net/10380/3558

* Core Improvements

- Making available GoogleTest for testing in ITK

- Support VCPKG, Microsoft's vcpkg C++ package management system for Visual
Studio

- Refactor ITK's ThreadPool implementation for performance

- Addition of type long long and unsigned long long for images

- Add options to itkTestDriver and itkTestingComparisonImageFilter to
compare image size, origin, spacing, and direction

- Adds itk_module_examples() macro to simplify the creation of independent
examples in remote modules

- Improve factory registration mechanism (see highlighted features)

- ITK Python modules now share the list of factories that are registered

- Automatic enabling of the -fPIC flag for external modules

- Detect the presence of feenableexcept to compile on Alpine Linux

- Update GDCM import script for changes in upstream content

- CMake minimum required version is now 2.8.12

* Filtering Improvements

- Improve Not functor and filter to follow other logic functors

- Separate functors from filters in header by operator groups

- Move rank filters out of review

- Explicitly warn and deprecate negative pixel spacing

- Add SliceImageFilter

- Move advance Demons registration filters out of review

- Add ShapeLabelObject::GetRegion method

- Many improvements in HoughTransform2DCirclesImageFilter

* IO Improvements

- Enable MINC IO by default

- PNG IO was crashing instead of returning false when it couldn’t read image

- Several DCMTK improvements: build DMCTK on Windows, replace ICONV with
ICU in DCMTK dependencies, support color images (RGB/RGBA)

- Use double floating point API for MetaImage: the text representation is
now closer to the
DICOM Image Orientation (Patient) or Image Position (Patient) attribute and
will allow easier conversion from one representation to the other.

- Fixed <nifti1_io.h> leak into user code

- Updated the Bruker2DSeq reader to ParaVision 6.0

- ITKIOBruker is now its own module, migrated out of ITKReview

* Documentation Improvements

- Improvement of documentation Markdown files throughout the repository

- Update old file headers/copyright notices.

- Improve source code coding style

- Enable offline Doxygen support

- Expose RayCastInterpolateImageFunction members in Doxygen

- Updated documentation for LabelStatisticsImageFilter::GetBoundingBox.

- Document behaviors of ChangeLabelLabelMapFilter

- New content in the ITK Software Guide on

 - Cross compilation

 - An entire new Coding Style Guide section

 - Python usage

 - Build configuration

* Remote Module Updates

-  AnisotropicDiffusionLBR (08.31.2017)

- Update MorphologicalContourInterpolation (09.22.2017)

* Third Party Library Updates

- Update pygccxml version (v1.9.0)

- Update libPNG to track upstream libpng16 branch

- Update version of DCMTK to 3.6.1_20170529

- Update CastXML to support GCC 7 (11.06.2017)

- Update MetaIO (12.04.2017)

- Adding libLBFGS third party library

- Update MINC (09.14.2017)

- Update VNL (10.05.2017)

* *Lots* of important bug fixes

* And much more! See details in the log below.


Changes from v4.12.0 to v4.13rc02

------------------------------------------------

Adrien Bailly (1):

     ENH: add wrapping for MultiResolutionIterationEvent and other missing
event

Beatriz Paniagua (2):

     ENH: Updating pygccxml version

     ENH: Updating libPNG to track upstream libpng16 branch

Brad King (2):

     ENH: Port GDCM update script to update-third-party.bash

     ENH: Update GDCM import script for changes in upstream content

Bradley Lowekamp (88):

     DOC: fix spelling transfrom->transform

     ENH: Improve Not functor and filter to follow other logic functors

     ENH: Separate functors from filters in header by operator groups

     DOC: Fix spelling mistakes from SimpleITK JSON, from spellintian

     ENH: making available GoogleTest for testing in ITK

     COMP: Address missing ITK_TEMPLATE_EXPORT definition

     COMP: Use single line for string argument, by-pass multi-line issues

     COMP: Revert to CMake 2 compatible line comment

     ENH: Move rank filters out of review

     BUG: Use const for pipeline inputs and state functions

     ENH: Explicitly warn and deprecate negative pixel spacing.

     BUG: Modify google test to define _VARIADIC_MAX=10

     COMP: Fix using system GoogleTest with a compiled system library

     ENH: Add SliceImageFilter

     COMP: Use itk::Math::abs over vnl_math_abs

     ENH: Add GetProbe method to collectors base.

     BUG: Add missing exports for GTest::* targets

     BUG: Fix computation of central moments for shape label map

     ENH: Adding operator functors from SimpleITK

     ENH: Choose efficient central moment computation for run

     BUG: Add missing OrientedBoundingBox option

     DOC: recommend using separate instances

     BUG: Manually set seed for ParticleSwarmOptimzerTest

     BUG: Fix computation of oriented bounding box

     BUG: shape label object elongation incorrectly zero

     ENH: Add GTest utilities for ITK

     ENH: adding explicit testing of computed label shape attributes

     BUG: Propagate make program to KWStyle ExternalProject

     BUG: Error only when unknown module is enabled.

     DOC: Document behaviors of ChangeLabelLabelMapFilter

     BUG: Document and assert improper usage of transform methods.

     COMP: Enable hidden visibility property with GoogleTest static
libraries

     DOC: Doxygen namespace tag must be full namespace

     BUG: Fix computation for Jacobian local vector

     BUG: Cast to PrintType for MaskLabel variable printing

     ENH: Update FixedPointInverseDisplacementField remote module

     BUG: Error only when unknown module is enabled.

     BUG: Fix computation of central moments for shape label map

     BUG: shape label object elongation incorrectly zero

     BUG: Fix computation of oriented bounding box

     BUG: Add missing OrientedBoundingBox option

     ENH: Update FixedPointInverseDisplacementField remote module

     ENH: Only remove hidden visibility for C file with CMake<3

     BUG: Print missing Seeds parameter and values used for Upper/Lower

     ENH: Remove unneeded m_Upper and m_Lower ivars

     ENH: Prefer raw pointers for pipelined owned objects

     ENH: Update to use CircleCI 2.0

     ENH: Enable MINC IO by default

     ENH: Move advance Demons registration filters out of review

     BUG: Fix CircleCI command to upload test results

     ENH: Test SliceBySlice with non-zero index

     BUG: Use same origin for internal image as input image

     BUG: Remove duplicate code from local commit

     COMP: Remove MINC library level exports

     ENH: Add ProcessObject::AddOptionalInputName and more named inputs

     ENH: Make more use of AddOptionalInputName

     BUG: Use input macros for const correct pipeline inputs

     ENH: Remove input name when renamed and add tests

     BUG: Correct OBB names in GetAttributeFromName

     ENH: Add ShapeLabelObject::GetRegion method

     ENH: Hide MINC data in MINCIImageIO interface

     BUG: Remove newly added warning in ProcessObject AddRequiredInput

     BUG: Apply constant function specifier

     BUG: Fix marking of required inputs for GPU PDE registration

     BUG: Add missing getter method for PDE InitialDisplacementField

     ENH: Use Input macros for set/get GPU PDE inputs

     ENH: Move private GE format headers to src

     ENH: CircleCI use ccache and cache external data

     ENH: Extract reusable code into a copy image information functor

     ENH: Change Cast parent class to InPlaceImageFilter

     BUG: Add search paths for GoogleTest as source code on system

     BUG: Update BinaryImageToLabelMapFilter::m_NumberOfLabels

     COMP: Remove shadowing typedef

     ENH: Updating remote module TextureFeatures to 3.0.0

     COMP: Use integer suffix for long long types

     BUG: Disable checking of OBB origin

     PERF: Use initialized global variable for default number of threads

     ENH: Add remote mote SimpleITKFilters

     ENH: Add type for MultiThreader used by the ProcessObject

     BUG: Don't use void pointer

     BUG: Fix LBFGS2 iteration count and iterface

     BUG: Use AutoPtr for initialization based resource acquisition

     BUG: Fix factory registration during static initialization

     BUG: Fix const correctness of GetDisplacementField, use named input

     STYLE: Use LineSearch conventions

     BUG: Relax timeout to 60 seconds for itkSimpleFastMutexLockTest

     COMP: Mark itkTimeVaryingBSplineVelocityFieldImageRegistrationTest long

     COMP: Address linking error using operator<<

David Kügler (1):

     BUG: better support for OBJ mesh format

Dženan Zukić (21):

     ENH: adding an example and improving tests

     ENH: support VCPKG

     ENH: rewriting ThreadPool and enabling it by default

     ENH: docs and compiler fix for ThreadPool, improvements of
itkBarrierTest

     ENH: turning off thread pool by default for now

     STYLE: minor fix in debug mode and clearer code intent by using macros

     STYLE: warn users of the DeformableSimplexMesh3DFilter's limitations

     ENH: Addition of type long long and unsigned long long for images

     STYLE: VTK Mesh IO code simplification

     COMP: fixing warnings

     BUG: a call to SetGlobalDefaultNumberOfThreads was not respected

     BUG: LONGLONG was not handled by DCMTKImageIO

     BUG: PNG IO: return false instead of crashing in CanReadFile

     COMP: fix a warning

     BUG: ThreadPool hangs on Windows when ITK is compiled as DLLs

     BUG: tests writing to the same file randomly fail during parallel
invocation

     COMP: fixing 2 compile errors on some compilers

     ENH: adding JSON format report to resource probe

     BUG: NIFTI crashing when requested region is set

     BUG: colliding file names caused spurious test failures

     BUG: fix two rename mistakes introduced in previous patch

Edwin Bennink (1):

     BUG: Fixed cylinder bbox, fixed and enhanced IsInside func

Floris Berendsen (1):

     COMP: add symbol name mangling for niftilib in ITK

Francois Budin (48):

     ENH: Bump ITK version to 4.13.0.

     BUG: Update external data content links

     ENH: Add cleanup option to content synchronization script

     BUG: Used ITK_HAVE_FEENABLEEXCEPT instead of ITK_HAS_FEENABLEEXCEPT

     Revert "Merge branch 'feenableexcept-musl-for-release' into release"

     Merge branch 'upstream-metaio' into update_metaIO

     ENH: Bump CMakeLists.txt version to 4.12.1.

     COMP: Remove -fvisibility-inlines-hidden warning with CMake 2.8.12

     BUG: Remove VNL view from array functions and rename wrong variable

     BUG: itkSimilarity2DTransform was not reporting singular matrices

     ENH: Add test to verify ITK-3553 fixes

     BUG: itkTestingComparisonImageFilter should derive from
itkImageToImageFilter

     BUG: Update tests to use ImageToImage compare image filter

     ENH: Add options to itkTestDriver and itkTestingComparisonImageFilter

     ENH: Adds MINC image IO wrapping

     ENH: Replace ICONV with ICU to compile DCMTK

     DOC: Document that workaround MSVC 2017 optimization bug has been
corrected

     BUG: sha512 file must exist before complaining that it hasn't been
updated

     BUG: Missing files for DCMTK ImageOrientation test

     BUG: itkgdcmopenjp2 was not exported in the build tree in GDCM

     BUG: Duplicate SetInput()/GetInput() in itkTestingComparisonImageFilter

     BUG: ICU_ARGS CMake variable should be declared CACHE

     BUG: Typo in CMake variable name

     BUG: Build DMCTK on Windows

     BUG: Support color images (RGB/RGBA) with DCMTK

     ENH: Add test for colored images loaded with DCMTK

     BUG: ICU is always compiled statically

     ENH: Update DCMTK build instructions for Windows

     ENH: Adds itk_module_examples() macro

     COMP: Bump CMake required version to 2.8.12

     ENH: Simplify itk-module-init.cmake for DCMTK

     BUG: Inconsistent image information between result and baseline

     BUG: Python docstrings were not generated anymore

     ENH: Add __call__() function in Python itkTemplate objects

     BUG: DMCTK configuration with ICU on Windows was only correct for
VS2017

     BUG: Remove man page generation that is not necessary anymore

     ENH: Improving factory registration

     ENH: Adding factory components

     ENH: Update remote modules using FACTORY_NAMES

     BUG: Add previously removed function __getattr__() in itkTemplate.py

     BUG: Synchronize factories across modules in Python

     ENH: Allow RAW itk-module as shared library

     BUG: ITK_WRAP_DOC should not be saved in ITKConfig.cmake

     BUG: Remove unicode characters that stop python docstring generation

     BUG: doxy2swig.py failed with Python3

     BUG: Allow compilation of VNL with MSVC<1600

     BUG: \default is not a doxygen keyword

     BUG: Better control of GDCM symbols with
CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS

GCC-XML Upstream (1):

     ENH: pygccxml v1.9.0 (reduced)

GDCM Upstream (4):

     GDCM 2017-09-15 (87e3c363)

     GDCM 2017-10-13 (46919364)

     GDCM 2017-11-09 (af81d444)

     GDCM 2017-11-23 (4c51c343)

Google double-conversion Maintainers (1):

     ENH: Google double-conversion (reduced)

GoogleTest Upstream (1):

     googletest 2016-07-14 (a3ac2d7f)

Hans Johnson (4):

     BUG: vnl_fft_1d lacks sufficient numerical stability

     COMP: Clang compiler regression

     ENH: Synchronized with cmake version of file

     BUG: Respect ITK_FUTURE_LEGACY_REMOVE

Jean-Baptiste VIMORT (2):

     ENH: Automatic enabling of the -fPIC flag for external modules

     ENH: Supression of GDCM's linking to CoreFoundation

Jean-Christophe Fillion-Robin (6):

     ENH: Support installing each module python wrapping independently

     COMP: Update KWsys to set MACOSX_RPATH property based on
CMAKE_MACOSX_RPATH

     COMP: Update MINC to set MACOSX_RPATH property based on
CMAKE_MACOSX_RPATH

     COMP: ITKModuleExternal: Reset targets file

     BUG: Fix hook clone

     COMP: UseITK: Fix configure error due to different subproject
requirements

Jon Haitz Legarreta (14):

     ENH: Improve coverage for v3 compatibility image arithm filters.

     DOC: Fix typo in 'exception'.

     STYLE: Improve the itk::FastMarchingImageFilterBase class style.

     STYLE: Improve itkApproximageSignedDistanceMapImageFilterTest style.

     ENH: Check for input/output objects with an assertion.

     BUG: Fix const casting compiler errors.

     DOC: Update old file headers/copyright notices.

     STYLE: Improve the itkSmoothingRecursiveGaussiaImageFilter style.

     ENH: Improve coverage for itkSmoothingRecursiveGaussianImageFilter.

     BUG: Fix links to NOTICE and LICENSE files in README.md.

     STYLE: Conform (partially) to ITK coding style.

     DOC: Add missing links to Markdown file cross-refs.

     ENH: Add a Pull Request template.

     DOC: Remove extension to Markdown cross-ref link text.

Jon Haitz Legarreta Gorroño (23):

     STYLE: Change SubtractConstantFromImageFilterTest name.

     BUG: Add missing input image iterator declaration.

     BUG: Fix Superclass names in V3Compatibility tests.

     DOC: Fix wrong comments in V3Compatibility tests.

     DOC: Correct the preferred class names in ITKv4.

     COMP: Fix valgrind-detected uninitialized members.

     ENH: Improve coverage for itkWarpHarmonicEnergyCalculator.

     ENH: Bump lastest version of remote repository.

     ENH: Display error message in Iterator classes' wrapping.

     DOC: Add links to NOTICE and LICENSE files in README.

     DOC: Rework the contributing files.

     DOC: Document how to upload binary data in a Markdown file.

     DOC: Transition ThirdParty top-level README files to Markdown.

     DOC: Add third party project updating documentation markdown file.

     DOC: Document the release process in a Markdown file.

     DOC: Transition Utilities/Maintenance/README Markdown.

     DOC: Remove Documentation/Style.pdf file.

     DOC: Redirect the "Submit a patch" link to CONTRIBUTING.md.

     DOC: Mention the ITK full name in README.md.

     DOC: Fix broken links and oversights in CONTRIBUTING.md.

     DOC: Add a GitHelp.md resource to Documentation.

     DOC: Make the ITK long name be consistent in .md files.

     DOC: Create ISSUE_TEMPLATE.md

KWSys Upstream (1):

     KWSys 2017-10-17 (fc4d55ba)

Laura Pascal (2):

     ENH: Update version of DCMTK to 3.6.1_20170529

     ENH: Update the DoubleConversion library upstream update script.

Mathieu Malaterre (4):

     ENH: Explicit set the precision when printing double

     ENH: Use double floating point API for MetaImage

     ENH: Define a global default double precision for MetaImage

     ENH: Enforce data truncation for legacy tests

Matthew McCormick (48):

     ENH: Add install rules for External Module Python package

     COMP: Do not wrap std::_Deque_alloc

     ENH: Wrap RegionOfInterestFilter for VectorImage's

     COMP: Disable CoreFoundation calls

     ENH: Execute the merge when updating third party subtrees

     ENH: Allow custom repo and branch for MetaIO subtree updates

     COMP: Specify AR to PCRE build on macOS

     BUG: Mark GoogleTest CMake options as advanced

     COMP: Address LBFGS2Optimizerv4 doxygen warnings

     BUG: ITKIOGE has a public dependency on ITKIOIPL

     COMP: Bump KWStyle to latest master

     ENH: Add TextureFeatures remote module

     COMP: Detect the presence of mallinfo

     COMP: IsNull() capitalization in LevelSetEquationAdvectionTerm

     ENH: Wrap FloatingPointExceptions

     COMP: Use GDCM_HAVE_BYTESWAP_H

     COMP: Fail early when byteswap functions are not available

     COMP: Detect the presence of feenableexcept

     BUG: Use itkGetConstObjectMacro for LogBiasFieldControlPointLattice

     COMP: Detect the presence of feenableexcept

     COMP: Use GDCM_HAVE_BYTESWAP_H

     COMP: Fix AnisotropicDiffusionLBR example build

     BUG: Correct GPUMeanImageFilter Superclass

     BUG: Remove debug code from GPUMeanImageFilter

     BUG: Do not use static_cast, SmartPointer in
GPUImage::GetGPUDataManager

     BUG: Remove debug code in itkGPUImage.hxx

     COMP: Do not call vector.data() in ITKIOBruker

     ENH: Bump CMakeLists.txt version to 4.12.1

     DOC: Format the README in markdown syntax

     DOC: Enable offline Doxygen support

     BUG: ITKIOMINC DEPENDS on ITKMINC

     BUG: Update Bruker IO wrapping after migration from ITKReview

     COMP: Update MorphologicalContourInterpolation to 2017-09-22

     DOC: Do not pre-cache Doxygen php files

     DOC: Expose RayCastInterpolateImageFunction members in Doxygen

     BUG: RayCastInterpolateImageFunciton physical space issues

     COMP: Overloaded - operator ambiguous in
RayCastInterpolateImageFunction

     BUG: Add missing template export for
GradientAnisotropicDiffusionImageFilter

     ENH: Wrap {Correlation,Demons,JointHistogramMI} Metricv4

     ENH: Add Python wrapping for ITKIOMesh

     BUG: Hide HDF5 CMake options from main configuration

     BUG: Add DCMTK external project dependency after ExternalProject_Add

     COMP: Bump CastXML to 2017-11-06 master

     BUG: Fix hooks clone when ITK is a submodule

     BUG: Remove duplicate entries of ITK_WRAP_PYTHON_LIBRARY_IMPORTS

     DOC: Remove broken HoughTransform2DCircles wiki examples link

     DOC: NeighborhoodIterator documentation formatting improvements

     COMP: Do not use export macro in vnl_amoeba default_verbose

MetaIO Maintainers (6):

     MetaIO 2017-07-20 (92caf34d)

     MetaIO 2017-08-17 (3e1cb552)

     MetaIO 2017-08-17 (3e1cb552)

     MetaIO 2017-10-04 (55395e3d)

     MetaIO 2017-08-31 (5f935e1b)

     MetaIO 2017-12-04 (02a2e22e)

Niels Dekker (23):

     COMP: Fixed <nifti1_io.h> leak into user code

     STYLE: Replaced NiftiImageHolder by AutoPointer

     COMP: Fixed "gifti_io.h" leak into user code

     COMP: Fixed "Ge5xHdr.h" leak into user code

     PERF: Break out of loop as soon as requested number of circles is found

     STYLE: Removed useless (or obsolete) local bool, 'found'.

     PERF: Avoid redundant search in GetCircles(n)

     PERF: GetCircles now calls Graft, instead of copying pixels from
GetOutput(0)

     DOC: Added comment that the grafted output image should not be
modified.

     STYLE: Removed HoughTransform GetCircles parameter (n) which appears
obsolete

     ENH: Added deprecated GetCircles(unsigned int) overload to
HoughTransform

     COMP: Replaced deprecated GetCircles(n) call in HoughTransform example

     BUG: HoughTransform CirclesList should be empty when NumberOfCircles
is zero

     ENH: Tested HoughTransform CirclesList is empty when NumberOfCircles
is zero

     BUG: HoughTransform GetCircles() should avoid circles with accumulator
<= 0

     STYLE: Removed HoughTransform GetLines parameter (n), which appears
obsolete

     ENH: Improved HoughTransform2DCirclesImageFilter accuracy, using
Math::Round

     BUG: HoughTransform GetLines() returned too many lines

     PERF: Improved speed of
HoughTransform2DCirclesImageFilter::GenerateData()

     STYLE: HoughTransform calling convenience overload of SetVariance

     DOC: Mentioned that HoughTransform2DCirclesImageFilter also finds discs

     ENH: Allow different types accumulator and radius image Hough Circles
filter

     BUG: Access violation itkGaussianDerivativeOperatorTest argv[0]

Pablo Hernandez-Cerdan (4):

     ENH: Add External Module IsotropicWavelets.

     ENH: Update ExternalModule IsotropicWavelets to v0.4

     ENH: Update IsotropicWavelets

     COMP: Fix macro ITK_NOEXCEPT, deprecate ITK_NOEXCEPT_OR_THROW

Rene-Paul Debroize (1):

     ENH: Add remote module TBBImageToImageFilter

Samuel Gerber (2):

     ENH: Adding libLBFGS third party library

     BUG: stdint.h missing on Visual Studio 9

Sean McBride (17):

     COMP: Added missing ITK_OVERRIDE

     COMP: fixed compilation error with int vs nullptr_t

     PERF: Fixed some comments; prefer preincrement

     COMP: Set GDCM_USE_COREFOUNDATION_LIBRARY off

     COMP: add itk prefix to gdcmopenjp2 library name

     COMP: Fixed some -Winconsistent-missing-override warnings

     COMP: Added ITK_OVERRIDE to hundreds of destructor declarations.

     COMP: Made ITK_OVERRIDE work only in MSVC >= 2012 (instead of 2010)

     COMP: Fixed Wshadow warnings by removing shadows

     COMP: Added a bunch more missing ITK_OVERRIDE

     COMP: suppress all compilers warnings from third party google test

     COMP: Added yet more ITK_OVERRIDEs, mostly on destructors

     COMP: Added yet more ITK_OVERRIDEs

     COMP: Fixed various -Wconst-qual warnings

     COMP: Fixed some Wcast-qual warnings

     COMP: Removed superfluous declarations in subclass, fixing override
warnings

     COMP: Silence -Wunused-template warnings by making affected methods
inline

Simon Rit (1):

     COMP: remove dynamic exception specifications

Steve Pieper (1):

     BUG: ITK-3553 fixes ImageOrientation issue in DCMTK reader

Tobias Wood (3):

     ENH: Updated the Bruker2DSeq reader to ParaVision 6.0

     BUG: Bruker2dseq was not registered correctly due to module name
change.

     BUG: Fixed origin & orientation issues.

VXL Maintainers (2):

     VNL 2017-10-05 (dd7794d9)

     VNL 2017-12-08 (a1573ca8)

Vladimir S. FONOV (2):

     MINC 2017-09-14 (e11c6df9)

     MINC 2017-10-18 (f2d06a67)

Ziv Yaniv (2):

     DOC: Updated documentation for
LabelStatisticsImageFilter::GetBoundingBox.

     BUG: itkVTKImageIO::CanWriteFile accepted files with wrong extension.



-----------------------------------------------------

Errors or omissions? Please fix them here:

https://docs.google.com/document/d/1orL9w1PfN3ipO6XplViBmDJ-maP90F8MfrdpL8srxFw/edit
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