From bill.lorensen at gmail.com  Sun Nov  1 11:21:38 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Sun, 1 Nov 2015 11:21:38 -0500
Subject: [ITK-dev] Clang compile error
Message-ID: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>

On my Mac clang build I get this:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_add_and_fetch(ref, 1);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::PreIncrement' requested here
    return static_cast<T>(Impl::PreIncrement(&this->m_Object));
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator++' requested here
    idx = ++TotalAtomic64;
          ^
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_sub_and_fetch(ref, 1);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::PreDecrement' requested here
    return static_cast<T>(Impl::PreDecrement(&this->m_Object));
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator--' requested here
    --TotalAtomic64;
    ^
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_add_and_fetch(ref, val);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
    return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator+=' requested here
    idx = TotalAtomic64 += 1;
                        ^
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_fetch_and_add(ref, 1);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::PostIncrement' requested here
    return static_cast<T>(Impl::PostIncrement(&this->m_Object));
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator++' requested here
    TotalAtomic64++;
                 ^
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_fetch_and_sub(ref, 1);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::PostDecrement' requested here
    return static_cast<T>(Impl::PostDecrement(&this->m_Object));
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator--' requested here
    TotalAtomic64--;
                 ^
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_sub_and_fetch(ref, val);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
    return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator-=' requested here
    TotalAtomic64 -= 1;
                  ^
6 errors generated.
make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
Error 1
make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
Error 2
make: *** [all] Error 2
[ITK-clang]

From matt.mccormick at kitware.com  Sun Nov  1 14:15:55 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Sun, 1 Nov 2015 14:15:55 -0500
Subject: [ITK-dev] [ITK]  Clang compile error
In-Reply-To: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
Message-ID: <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>

Hi Bill,

What is the OSX / Clang / Xcode version?

Thanks,
Matt

On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> On my Mac clang build I get this:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_add_and_fetch(ref, 1);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>     idx = ++TotalAtomic64;
>           ^
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_sub_and_fetch(ref, 1);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>     --TotalAtomic64;
>     ^
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_add_and_fetch(ref, val);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>     idx = TotalAtomic64 += 1;
>                         ^
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_fetch_and_add(ref, 1);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>     TotalAtomic64++;
>                  ^
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_fetch_and_sub(ref, 1);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>     TotalAtomic64--;
>                  ^
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_sub_and_fetch(ref, val);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>     TotalAtomic64 -= 1;
>                   ^
> 6 errors generated.
> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
> Error 1
> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
> Error 2
> make: *** [all] Error 2
> [ITK-clang]
> _______________________________________________
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>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
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>
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From bill.lorensen at gmail.com  Sun Nov  1 15:03:30 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Sun, 1 Nov 2015 15:03:30 -0500
Subject: [ITK-dev] [ITK]  Clang compile error
In-Reply-To: <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
 <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
Message-ID: <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>

OSX 10.7.5

Apple clang version 3.0 (tags/Apple/clang-211.12) (based on LLVM 3.0svn)
Target: x86_64-apple-darwin11.4.2
Thread model: posix


On Sun, Nov 1, 2015 at 2:15 PM, Matt McCormick
<matt.mccormick at kitware.com> wrote:
> Hi Bill,
>
> What is the OSX / Clang / Xcode version?
>
> Thanks,
> Matt
>
> On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>> On my Mac clang build I get this:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_add_and_fetch(ref, 1);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>     idx = ++TotalAtomic64;
>>           ^
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_sub_and_fetch(ref, 1);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>     --TotalAtomic64;
>>     ^
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_add_and_fetch(ref, val);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>>     idx = TotalAtomic64 += 1;
>>                         ^
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_fetch_and_add(ref, 1);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>     TotalAtomic64++;
>>                  ^
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_fetch_and_sub(ref, 1);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>     TotalAtomic64--;
>>                  ^
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_sub_and_fetch(ref, val);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>>     TotalAtomic64 -= 1;
>>                   ^
>> 6 errors generated.
>> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
>> Error 1
>> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
>> Error 2
>> make: *** [all] Error 2
>> [ITK-clang]
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community



-- 
Unpaid intern in BillsBasement at noware dot com

From p.zaffino at yahoo.it  Mon Nov  2 09:30:21 2015
From: p.zaffino at yahoo.it (Paolo Zaffino)
Date: Mon, 2 Nov 2015 15:30:21 +0100
Subject: [ITK-dev] HessianToObjectnessMeasureImageFilter in SimpleITK
Message-ID: <5637737D.5050202@yahoo.it>

Dear all,
I am interesting in having HessianToObjectnessMeasureImageFilter into 
SimpleITK.
As far as I know, it is not currently wrapped and for this reason I was 
thinking to do it by myself.

I am not so expert, so please apologize me if I say something wrong.
Let's use HausdorffDistanceImageFilter as example.

As far as I understood, the file 
"SimpleITK/Code/BasicFilters/json/HausdorffDistanceImageFilter.json" 
contains all the wrapping stuff.
My question is: do I have just to write something like that file for the 
HessianToObjectnessMeasureImageFilter, or something more is needed?

Thank you very much.
Best regards.

Paolo

-------------- next part --------------
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From bill.lorensen at gmail.com  Mon Nov  2 11:03:06 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Mon, 2 Nov 2015 11:03:06 -0500
Subject: [ITK-dev] [ITK]  Clang compile error
In-Reply-To: <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
 <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
 <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>
Message-ID: <CADZJ4hO==U_RUHTw4D2jPbkOSC7FvpVzoG=p=8aSMzT2em8OZw@mail.gmail.com>

Matt,

Any ideas?

Bill

On Sun, Nov 1, 2015 at 3:03 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> OSX 10.7.5
>
> Apple clang version 3.0 (tags/Apple/clang-211.12) (based on LLVM 3.0svn)
> Target: x86_64-apple-darwin11.4.2
> Thread model: posix
>
>
> On Sun, Nov 1, 2015 at 2:15 PM, Matt McCormick
> <matt.mccormick at kitware.com> wrote:
>> Hi Bill,
>>
>> What is the OSX / Clang / Xcode version?
>>
>> Thanks,
>> Matt
>>
>> On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>> On my Mac clang build I get this:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_add_and_fetch(ref, 1);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>>>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>     idx = ++TotalAtomic64;
>>>           ^
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_sub_and_fetch(ref, 1);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>>>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>     --TotalAtomic64;
>>>     ^
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_add_and_fetch(ref, val);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>>>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>>>     idx = TotalAtomic64 += 1;
>>>                         ^
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_fetch_and_add(ref, 1);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>>>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>     TotalAtomic64++;
>>>                  ^
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_fetch_and_sub(ref, 1);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>>>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>     TotalAtomic64--;
>>>                  ^
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_sub_and_fetch(ref, val);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>>>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>>>     TotalAtomic64 -= 1;
>>>                   ^
>>> 6 errors generated.
>>> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
>>> Error 1
>>> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
>>> Error 2
>>> make: *** [all] Error 2
>>> [ITK-clang]
>>> _______________________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://kitware.com/products/protraining.php
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>> _______________________________________________
>>> Community mailing list
>>> Community at itk.org
>>> http://public.kitware.com/mailman/listinfo/community
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com



-- 
Unpaid intern in BillsBasement at noware dot com

From bill.lorensen at gmail.com  Mon Nov  2 11:11:22 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Mon, 2 Nov 2015 11:11:22 -0500
Subject: [ITK-dev] [ITK]  Clang compile error
In-Reply-To: <CADZJ4hO==U_RUHTw4D2jPbkOSC7FvpVzoG=p=8aSMzT2em8OZw@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
 <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
 <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>
 <CADZJ4hO==U_RUHTw4D2jPbkOSC7FvpVzoG=p=8aSMzT2em8OZw@mail.gmail.com>
Message-ID: <CADZJ4hOs=1W1r1ftZ8HfqHV-mg+nVE6ugi0a5EbrbNYPfcNQgQ@mail.gmail.com>

Matt,

I just did an update and it seems the issue is gone.

On Mon, Nov 2, 2015 at 11:03 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> Matt,
>
> Any ideas?
>
> Bill
>
> On Sun, Nov 1, 2015 at 3:03 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>> OSX 10.7.5
>>
>> Apple clang version 3.0 (tags/Apple/clang-211.12) (based on LLVM 3.0svn)
>> Target: x86_64-apple-darwin11.4.2
>> Thread model: posix
>>
>>
>> On Sun, Nov 1, 2015 at 2:15 PM, Matt McCormick
>> <matt.mccormick at kitware.com> wrote:
>>> Hi Bill,
>>>
>>> What is the OSX / Clang / Xcode version?
>>>
>>> Thanks,
>>> Matt
>>>
>>> On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>>> On my Mac clang build I get this:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_add_and_fetch(ref, 1);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>>>>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>     idx = ++TotalAtomic64;
>>>>           ^
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_sub_and_fetch(ref, 1);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>>>>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>     --TotalAtomic64;
>>>>     ^
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_add_and_fetch(ref, val);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>>>>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>>>>     idx = TotalAtomic64 += 1;
>>>>                         ^
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_fetch_and_add(ref, 1);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>>>>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>     TotalAtomic64++;
>>>>                  ^
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_fetch_and_sub(ref, 1);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>>>>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>     TotalAtomic64--;
>>>>                  ^
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_sub_and_fetch(ref, val);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>>>>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>>>>     TotalAtomic64 -= 1;
>>>>                   ^
>>>> 6 errors generated.
>>>> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
>>>> Error 1
>>>> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
>>>> Error 2
>>>> make: *** [all] Error 2
>>>> [ITK-clang]
>>>> _______________________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://kitware.com/products/protraining.php
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>> _______________________________________________
>>>> Community mailing list
>>>> Community at itk.org
>>>> http://public.kitware.com/mailman/listinfo/community
>>
>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com



-- 
Unpaid intern in BillsBasement at noware dot com

From matt.mccormick at kitware.com  Mon Nov  2 11:12:13 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 2 Nov 2015 11:12:13 -0500
Subject: [ITK-dev] [ITK]  Clang compile error
In-Reply-To: <CADZJ4hOs=1W1r1ftZ8HfqHV-mg+nVE6ugi0a5EbrbNYPfcNQgQ@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
 <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
 <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>
 <CADZJ4hO==U_RUHTw4D2jPbkOSC7FvpVzoG=p=8aSMzT2em8OZw@mail.gmail.com>
 <CADZJ4hOs=1W1r1ftZ8HfqHV-mg+nVE6ugi0a5EbrbNYPfcNQgQ@mail.gmail.com>
Message-ID: <CALzTN-T4QnZJxG6hf25ZGLP86V1QuK-wco3jU2X+X4V=jcSOgg@mail.gmail.com>

Bill,

Thanks for the update.  Yes, that code has been there for a while, and
the error was not familiar.

Thanks,
Matt

On Mon, Nov 2, 2015 at 11:11 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> Matt,
>
> I just did an update and it seems the issue is gone.
>
> On Mon, Nov 2, 2015 at 11:03 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>> Matt,
>>
>> Any ideas?
>>
>> Bill
>>
>> On Sun, Nov 1, 2015 at 3:03 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>> OSX 10.7.5
>>>
>>> Apple clang version 3.0 (tags/Apple/clang-211.12) (based on LLVM 3.0svn)
>>> Target: x86_64-apple-darwin11.4.2
>>> Thread model: posix
>>>
>>>
>>> On Sun, Nov 1, 2015 at 2:15 PM, Matt McCormick
>>> <matt.mccormick at kitware.com> wrote:
>>>> Hi Bill,
>>>>
>>>> What is the OSX / Clang / Xcode version?
>>>>
>>>> Thanks,
>>>> Matt
>>>>
>>>> On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>>>> On my Mac clang build I get this:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_add_and_fetch(ref, 1);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>>>>>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>>     idx = ++TotalAtomic64;
>>>>>           ^
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_sub_and_fetch(ref, 1);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>>>>>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>>     --TotalAtomic64;
>>>>>     ^
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_add_and_fetch(ref, val);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>>>>>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>>>>>     idx = TotalAtomic64 += 1;
>>>>>                         ^
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_fetch_and_add(ref, 1);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>>>>>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>>     TotalAtomic64++;
>>>>>                  ^
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_fetch_and_sub(ref, 1);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>>>>>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>>     TotalAtomic64--;
>>>>>                  ^
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_sub_and_fetch(ref, val);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>>>>>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>>>>>     TotalAtomic64 -= 1;
>>>>>                   ^
>>>>> 6 errors generated.
>>>>> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
>>>>> Error 1
>>>>> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
>>>>> Error 2
>>>>> make: *** [all] Error 2
>>>>> [ITK-clang]
>>>>> _______________________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://kitware.com/products/protraining.php
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>> _______________________________________________
>>>>> Community mailing list
>>>>> Community at itk.org
>>>>> http://public.kitware.com/mailman/listinfo/community
>>>
>>>
>>>
>>> --
>>> Unpaid intern in BillsBasement at noware dot com
>>
>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com

From bill.lorensen at gmail.com  Mon Nov  2 11:15:04 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Mon, 2 Nov 2015 11:15:04 -0500
Subject: [ITK-dev] [ITK]  Clang compile error
In-Reply-To: <CALzTN-T4QnZJxG6hf25ZGLP86V1QuK-wco3jU2X+X4V=jcSOgg@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
 <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
 <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>
 <CADZJ4hO==U_RUHTw4D2jPbkOSC7FvpVzoG=p=8aSMzT2em8OZw@mail.gmail.com>
 <CADZJ4hOs=1W1r1ftZ8HfqHV-mg+nVE6ugi0a5EbrbNYPfcNQgQ@mail.gmail.com>
 <CALzTN-T4QnZJxG6hf25ZGLP86V1QuK-wco3jU2X+X4V=jcSOgg@mail.gmail.com>
Message-ID: <CADZJ4hO7XoTjkbT8Fwv1eR-rYym-SpFSkhkt8SWLQ1qPGmycFg@mail.gmail.com>

Matt,

I had not built with clang in a long time. I eventually rebuilt in a
clean directory. Maybe that fixed it.

Thanks,

Bill


On Mon, Nov 2, 2015 at 11:12 AM, Matt McCormick
<matt.mccormick at kitware.com> wrote:
> Bill,
>
> Thanks for the update.  Yes, that code has been there for a while, and
> the error was not familiar.
>
> Thanks,
> Matt
>
> On Mon, Nov 2, 2015 at 11:11 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>> Matt,
>>
>> I just did an update and it seems the issue is gone.
>>
>> On Mon, Nov 2, 2015 at 11:03 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>> Matt,
>>>
>>> Any ideas?
>>>
>>> Bill
>>>
>>> On Sun, Nov 1, 2015 at 3:03 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>>> OSX 10.7.5
>>>>
>>>> Apple clang version 3.0 (tags/Apple/clang-211.12) (based on LLVM 3.0svn)
>>>> Target: x86_64-apple-darwin11.4.2
>>>> Thread model: posix
>>>>
>>>>
>>>> On Sun, Nov 1, 2015 at 2:15 PM, Matt McCormick
>>>> <matt.mccormick at kitware.com> wrote:
>>>>> Hi Bill,
>>>>>
>>>>> What is the OSX / Clang / Xcode version?
>>>>>
>>>>> Thanks,
>>>>> Matt
>>>>>
>>>>> On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>>>>> On my Mac clang build I get this:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_add_and_fetch(ref, 1);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>>>>>>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>>>     idx = ++TotalAtomic64;
>>>>>>           ^
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_sub_and_fetch(ref, 1);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>>>>>>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>>>     --TotalAtomic64;
>>>>>>     ^
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_add_and_fetch(ref, val);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>>>>>>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>>>>>>     idx = TotalAtomic64 += 1;
>>>>>>                         ^
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_fetch_and_add(ref, 1);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>>>>>>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>>>     TotalAtomic64++;
>>>>>>                  ^
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_fetch_and_sub(ref, 1);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>>>>>>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>>>     TotalAtomic64--;
>>>>>>                  ^
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_sub_and_fetch(ref, val);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>>>>>>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>>>>>>     TotalAtomic64 -= 1;
>>>>>>                   ^
>>>>>> 6 errors generated.
>>>>>> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
>>>>>> Error 1
>>>>>> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
>>>>>> Error 2
>>>>>> make: *** [all] Error 2
>>>>>> [ITK-clang]
>>>>>> _______________________________________________
>>>>>> Powered by www.kitware.com
>>>>>>
>>>>>> Visit other Kitware open-source projects at
>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>
>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>> http://kitware.com/products/protraining.php
>>>>>>
>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>
>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>> _______________________________________________
>>>>>> Community mailing list
>>>>>> Community at itk.org
>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>
>>>>
>>>>
>>>> --
>>>> Unpaid intern in BillsBasement at noware dot com
>>>
>>>
>>>
>>> --
>>> Unpaid intern in BillsBasement at noware dot com
>>
>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com



-- 
Unpaid intern in BillsBasement at noware dot com

From blowekamp at mail.nih.gov  Mon Nov  2 11:41:06 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Mon, 2 Nov 2015 11:41:06 -0500
Subject: [ITK-dev] HessianToObjectnessMeasureImageFilter in SimpleITK
In-Reply-To: <5637737D.5050202@yahoo.it>
References: <5637737D.5050202@yahoo.it>
Message-ID: <284D40EA-D810-46DC-9B87-B0DD61DB99C6@mail.nih.gov>

Hello Paolo,

For many filters you are correct. You just need to write a json file which describes the filter's parameters and template parameters.

For the HessianToObjectnessMeasureImageFilter there is the difficulty is that Hessian pixel types aren't currently implemented in SimpleITK.

However this can be easily fixed by writing a little composite filter. A better interface for this operation is to have a scalar image as input, and the output be the feature measurement. This should be done as the composite filter which is wrapped.

Contribution to SimpleITK are welcomed. Please let us know if you need any further guidance.
Brad


On Nov 2, 2015, at 9:30 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:

> Dear all,
> I am interesting in having HessianToObjectnessMeasureImageFilter into SimpleITK.
> As far as I know, it is not currently wrapped and for this reason I was thinking to do it by myself.
> 
> I am not so expert, so please apologize me if I say something wrong.
> Let's use HausdorffDistanceImageFilter as example.
> 
> As far as I understood, the file "SimpleITK/Code/BasicFilters/json/HausdorffDistanceImageFilter.json" contains all the wrapping stuff.
> My question is: do I have just to write something like that file for the HessianToObjectnessMeasureImageFilter, or something more is needed?
> 
> Thank you very much.
> Best regards.
> 
> Paolo
> 
> _______________________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers


From p.zaffino at yahoo.it  Mon Nov  2 11:50:52 2015
From: p.zaffino at yahoo.it (Paolo Zaffino)
Date: Mon, 2 Nov 2015 17:50:52 +0100
Subject: [ITK-dev] HessianToObjectnessMeasureImageFilter in SimpleITK
In-Reply-To: <284D40EA-D810-46DC-9B87-B0DD61DB99C6@mail.nih.gov>
References: <5637737D.5050202@yahoo.it>
 <284D40EA-D810-46DC-9B87-B0DD61DB99C6@mail.nih.gov>
Message-ID: <5637946C.4010204@yahoo.it>

Hi Brad,
do you have any examples of a composite filters?
What about instead of returning the final probability as scalar data 
(float/double)?

Thank you very much.
Best.

Paolo


On 02/11/2015 17:41, Bradley Lowekamp wrote:
> Hello Paolo,
>
> For many filters you are correct. You just need to write a json file which describes the filter's parameters and template parameters.
>
> For the HessianToObjectnessMeasureImageFilter there is the difficulty is that Hessian pixel types aren't currently implemented in SimpleITK.
>
> However this can be easily fixed by writing a little composite filter. A better interface for this operation is to have a scalar image as input, and the output be the feature measurement. This should be done as the composite filter which is wrapped.
>
> Contribution to SimpleITK are welcomed. Please let us know if you need any further guidance.
> Brad
>
>
> On Nov 2, 2015, at 9:30 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:
>
>> Dear all,
>> I am interesting in having HessianToObjectnessMeasureImageFilter into SimpleITK.
>> As far as I know, it is not currently wrapped and for this reason I was thinking to do it by myself.
>>
>> I am not so expert, so please apologize me if I say something wrong.
>> Let's use HausdorffDistanceImageFilter as example.
>>
>> As far as I understood, the file "SimpleITK/Code/BasicFilters/json/HausdorffDistanceImageFilter.json" contains all the wrapping stuff.
>> My question is: do I have just to write something like that file for the HessianToObjectnessMeasureImageFilter, or something more is needed?
>>
>> Thank you very much.
>> Best regards.
>>
>> Paolo
>>
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>


From blowekamp at mail.nih.gov  Mon Nov  2 11:56:23 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Mon, 2 Nov 2015 11:56:23 -0500
Subject: [ITK-dev] HessianToObjectnessMeasureImageFilter in SimpleITK
In-Reply-To: <5637946C.4010204@yahoo.it>
References: <5637737D.5050202@yahoo.it>
 <284D40EA-D810-46DC-9B87-B0DD61DB99C6@mail.nih.gov>
 <5637946C.4010204@yahoo.it>
Message-ID: <98464BDB-F1A6-4DB4-A754-BD70DADFC171@mail.nih.gov>

There is a book on it, now in freshly rendered HTML:

http://itk.org/ITKSoftwareGuide/html/Book1/ITKSoftwareGuide-Book1ch8.html

Brad

On Nov 2, 2015, at 11:50 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:

> Hi Brad,
> do you have any examples of a composite filters?
> What about instead of returning the final probability as scalar data (float/double)?
> 
> Thank you very much.
> Best.
> 
> Paolo
> 
> 
> On 02/11/2015 17:41, Bradley Lowekamp wrote:
>> Hello Paolo,
>> 
>> For many filters you are correct. You just need to write a json file which describes the filter's parameters and template parameters.
>> 
>> For the HessianToObjectnessMeasureImageFilter there is the difficulty is that Hessian pixel types aren't currently implemented in SimpleITK.
>> 
>> However this can be easily fixed by writing a little composite filter. A better interface for this operation is to have a scalar image as input, and the output be the feature measurement. This should be done as the composite filter which is wrapped.
>> 
>> Contribution to SimpleITK are welcomed. Please let us know if you need any further guidance.
>> Brad
>> 
>> 
>> On Nov 2, 2015, at 9:30 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:
>> 
>>> Dear all,
>>> I am interesting in having HessianToObjectnessMeasureImageFilter into SimpleITK.
>>> As far as I know, it is not currently wrapped and for this reason I was thinking to do it by myself.
>>> 
>>> I am not so expert, so please apologize me if I say something wrong.
>>> Let's use HausdorffDistanceImageFilter as example.
>>> 
>>> As far as I understood, the file "SimpleITK/Code/BasicFilters/json/HausdorffDistanceImageFilter.json" contains all the wrapping stuff.
>>> My question is: do I have just to write something like that file for the HessianToObjectnessMeasureImageFilter, or something more is needed?
>>> 
>>> Thank you very much.
>>> Best regards.
>>> 
>>> Paolo
>>> 
>>> _______________________________________________
>>> Powered by www.kitware.com
>>> 
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>> 
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://kitware.com/products/protraining.php
>>> 
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>> 
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>> 
> 


From skalexander at gmail.com  Thu Nov  5 14:05:48 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Thu, 05 Nov 2015 19:05:48 +0000
Subject: [ITK-dev] VS2015 and 4.8.1
Message-ID: <CAJFNcCQhsSOniFA1scibN=90qv+TwHrehC9Kqur0qw9taSkb6A@mail.gmail.com>

Has anyone successfully built and tested  4.8.1  64 bit with visual studio
2015 ?

Initial problem I've been getting is  cmake config issues (with 3.3.2, but
also previous) on string formats for 64 bit longs, so this may be a config
issue not to do with ITK specifically.
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From matt.mccormick at kitware.com  Thu Nov  5 14:22:13 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 5 Nov 2015 14:22:13 -0500
Subject: [ITK-dev] VS2015 and 4.8.1
In-Reply-To: <CAJFNcCQhsSOniFA1scibN=90qv+TwHrehC9Kqur0qw9taSkb6A@mail.gmail.com>
References: <CAJFNcCQhsSOniFA1scibN=90qv+TwHrehC9Kqur0qw9taSkb6A@mail.gmail.com>
Message-ID: <CALzTN-QyhBkeYwR6NxbuNJSbfZ2EvQr4WHW7_7WVpA5czQ8TGQ@mail.gmail.com>

Hi Simon,

Please use ITK Git master or release branch, which contains the fix.
ITK 4.8.2 will be released soon.

  http://www.itk.org/Wiki/ITK/Git

Thanks,
Matt

On Thu, Nov 5, 2015 at 2:05 PM, Simon Alexander <skalexander at gmail.com> wrote:
> Has anyone successfully built and tested  4.8.1  64 bit with visual studio
> 2015 ?
>
> Initial problem I've been getting is  cmake config issues (with 3.3.2, but
> also previous) on string formats for 64 bit longs, so this may be a config
> issue not to do with ITK specifically.
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>

From zack.galbreath at kitware.com  Thu Nov  5 14:50:13 2015
From: zack.galbreath at kitware.com (Zack Galbreath)
Date: Thu, 5 Nov 2015 14:50:13 -0500
Subject: [ITK-dev] test the new CDash
Message-ID: <CANgkMA6Chp0Wh-9gOcR12=GWGRK7oB_c4gc9dxdMM9wZsJ4TGQ@mail.gmail.com>

This past weekend I attempted to roll out a new version of CDash's
index.php page.  It ended up performing too slowly and causing some user's
browsers to freeze up, particularly for VTK.  Since then I've spent some
time trying to improve its performance.

I'd appreciate feedback on how my latest version behaves for you:

http://testing.cdash.org/index.php?project=VTK
http://testing.cdash.org/index.php?project=Insight

You'll notice that each group only shows 10 builds at a time by default.
In addition to helping the page render more quickly, this change also makes
it easier to scroll to the bottom of the page where coverage & dynamic
analysis data reside.
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From bill.lorensen at gmail.com  Thu Nov  5 15:09:41 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Thu, 5 Nov 2015 15:09:41 -0500
Subject: [ITK-dev] test the new CDash
In-Reply-To: <CANgkMA6Chp0Wh-9gOcR12=GWGRK7oB_c4gc9dxdMM9wZsJ4TGQ@mail.gmail.com>
References: <CANgkMA6Chp0Wh-9gOcR12=GWGRK7oB_c4gc9dxdMM9wZsJ4TGQ@mail.gmail.com>
Message-ID: <CADZJ4hPX6GYoMyWNqPpX-P4bNgdUaZd_B-bkM=NB2PCe+dRaWg@mail.gmail.com>

It's fast for me on the browser that had trouble last weekend.


On Thu, Nov 5, 2015 at 2:50 PM, Zack Galbreath
<zack.galbreath at kitware.com> wrote:
> This past weekend I attempted to roll out a new version of CDash's index.php
> page.  It ended up performing too slowly and causing some user's browsers to
> freeze up, particularly for VTK.  Since then I've spent some time trying to
> improve its performance.
>
> I'd appreciate feedback on how my latest version behaves for you:
>
> http://testing.cdash.org/index.php?project=VTK
> http://testing.cdash.org/index.php?project=Insight
>
> You'll notice that each group only shows 10 builds at a time by default.  In
> addition to helping the page render more quickly, this change also makes it
> easier to scroll to the bottom of the page where coverage & dynamic analysis
> data reside.
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>



-- 
Unpaid intern in BillsBasement at noware dot com

From matt.mccormick at kitware.com  Thu Nov  5 15:16:13 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 5 Nov 2015 15:16:13 -0500
Subject: [ITK-dev] [vtk-developers]  test the new CDash
In-Reply-To: <CADZJ4hPX6GYoMyWNqPpX-P4bNgdUaZd_B-bkM=NB2PCe+dRaWg@mail.gmail.com>
References: <CANgkMA6Chp0Wh-9gOcR12=GWGRK7oB_c4gc9dxdMM9wZsJ4TGQ@mail.gmail.com>
 <CADZJ4hPX6GYoMyWNqPpX-P4bNgdUaZd_B-bkM=NB2PCe+dRaWg@mail.gmail.com>
Message-ID: <CALzTN-SJQ74ATHZS8oaLUa2yn_iLCt_QaHW9isnojrFhVF+NgQ@mail.gmail.com>

+1, much faster now.

Thank for the improvements!

Could the number of items displayed be made persistent across page
visits? I also noticed that going to the "Last" set is blank.

Thanks,
Matt

On Thu, Nov 5, 2015 at 3:09 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> It's fast for me on the browser that had trouble last weekend.
>
>
> On Thu, Nov 5, 2015 at 2:50 PM, Zack Galbreath
> <zack.galbreath at kitware.com> wrote:
>> This past weekend I attempted to roll out a new version of CDash's index.php
>> page.  It ended up performing too slowly and causing some user's browsers to
>> freeze up, particularly for VTK.  Since then I've spent some time trying to
>> improve its performance.
>>
>> I'd appreciate feedback on how my latest version behaves for you:
>>
>> http://testing.cdash.org/index.php?project=VTK
>> http://testing.cdash.org/index.php?project=Insight
>>
>> You'll notice that each group only shows 10 builds at a time by default.  In
>> addition to helping the page render more quickly, this change also makes it
>> easier to scroll to the bottom of the page where coverage & dynamic analysis
>> data reside.
>>
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html
>
> Search the list archives at: http://markmail.org/search/?q=vtk-developers
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/vtk-developers
>

From zack.galbreath at kitware.com  Thu Nov  5 15:46:06 2015
From: zack.galbreath at kitware.com (Zack Galbreath)
Date: Thu, 5 Nov 2015 15:46:06 -0500
Subject: [ITK-dev] [vtk-developers]  test the new CDash
In-Reply-To: <CALzTN-SJQ74ATHZS8oaLUa2yn_iLCt_QaHW9isnojrFhVF+NgQ@mail.gmail.com>
References: <CANgkMA6Chp0Wh-9gOcR12=GWGRK7oB_c4gc9dxdMM9wZsJ4TGQ@mail.gmail.com>
 <CADZJ4hPX6GYoMyWNqPpX-P4bNgdUaZd_B-bkM=NB2PCe+dRaWg@mail.gmail.com>
 <CALzTN-SJQ74ATHZS8oaLUa2yn_iLCt_QaHW9isnojrFhVF+NgQ@mail.gmail.com>
Message-ID: <CANgkMA5wVn50r2O83Gx0gBb7Q4VDyMunoRy71DpKE9j6bEVc1g@mail.gmail.com>

On Thu, Nov 5, 2015 at 3:16 PM, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Could the number of items displayed be made persistent across page
> visits?


Good suggestion.


I also noticed that going to the "Last" set is blank.
>

I see that now too, on the "Expected Nightly" section of the ITK dashboard.

I'll make sure to resolve both of these issues before pushing these changes
to open.cdash.org.  Thanks for the feedback.
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From matt.mccormick at kitware.com  Mon Nov  9 09:28:53 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 9 Nov 2015 09:28:53 -0500
Subject: [ITK-dev] Patches for the 4.8.2 release
Message-ID: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>

Hi,

It is time to make the 4.8.2 release. The following patches are new on
the release branch since 4.8.1.  Is there anything missing?

Thanks,
Matt

Bradley Lowekamp (4):
      BUG: Avoid potential exception in itk::Object::UnRegister
      BUG: Avoid null deference in PrintSelf with default construction
      BUG: Use const pointer in Set method for constant ReferenceImage ivar
      BUG: Fix segfault when with empty IsolatedWatershed Threshold range

Davis Vigneault (3):
      COMP: Warnings in itkVTKImageExport when compiling with c++11
      DOC: Expanded Canny Edge Detection Example
      COMP: Warnings in FFTW Classes when compiling with c++11

Eugene Prilepin (1):
      BUG: Fix a template name formation in python wrappings

Hans Johnson (5):
      STYLE: Minor code style issues for MGHIO
      COMP: Update to version for WikiExamples
      ENH: Update Sphinx for ITK 4.8.0
      ENH: Update MGHIO to be shared lib
      BUG: Fix MGHIO to fix write failures

Hyun Jae Kang (4):
      BUG: Fix HDF5 CMake configuration with VS2015
      BUG: Remove std::cout calls from class
      BUG: itkVTKImageIO class does not handle blank lines in VTK file header.
      BUG: Fixed older XCode linking error

Matthew McCormick (8):
      COMP: Do not use C++11 alignas in itkAlignedTypedef.
      COMP: Remove unused argument in ConditionVariableNoThreads.
      DOC: Correct spelling of Continuous.
      COMP: Fix KernelTransform SetFixedParameters argument type.
      STYLE: Use prefix increment operator in ImageBase.
      COMP: Use ITK's pygccxml by correctly setting up the sys.path
      COMP: Set CMP0054 to new.

Michka Popoff (1):
      COMP: Disable incompatible modules when using Python 3 wrapping

Mikhail Isakov (1):
      BUG: DiffusionTensor3DReconstruction segfault if no baseline image

From matt.mccormick at kitware.com  Mon Nov  9 09:57:46 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 9 Nov 2015 09:57:46 -0500
Subject: [ITK-dev] Patches for the 4.8.2 release
In-Reply-To: <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
Message-ID: <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>

Thanks!  Added.

On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
> We should consider this:
> http://review.source.kitware.com/#/c/20369/
>
> This helps with using VS2015 GUI.
>
>
> On Nov 9, 2015, at 9:28 AM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>
>> Hi,
>>
>> It is time to make the 4.8.2 release. The following patches are new on
>> the release branch since 4.8.1.  Is there anything missing?
>>
>> Thanks,
>> Matt
>>
>> Bradley Lowekamp (4):
>>      BUG: Avoid potential exception in itk::Object::UnRegister
>>      BUG: Avoid null deference in PrintSelf with default construction
>>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
>>
>> Davis Vigneault (3):
>>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>      DOC: Expanded Canny Edge Detection Example
>>      COMP: Warnings in FFTW Classes when compiling with c++11
>>
>> Eugene Prilepin (1):
>>      BUG: Fix a template name formation in python wrappings
>>
>> Hans Johnson (5):
>>      STYLE: Minor code style issues for MGHIO
>>      COMP: Update to version for WikiExamples
>>      ENH: Update Sphinx for ITK 4.8.0
>>      ENH: Update MGHIO to be shared lib
>>      BUG: Fix MGHIO to fix write failures
>>
>> Hyun Jae Kang (4):
>>      BUG: Fix HDF5 CMake configuration with VS2015
>>      BUG: Remove std::cout calls from class
>>      BUG: itkVTKImageIO class does not handle blank lines in VTK file header.
>>      BUG: Fixed older XCode linking error
>>
>> Matthew McCormick (8):
>>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>      DOC: Correct spelling of Continuous.
>>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>      STYLE: Use prefix increment operator in ImageBase.
>>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>      COMP: Set CMP0054 to new.
>>
>> Michka Popoff (1):
>>      COMP: Disable incompatible modules when using Python 3 wrapping
>>
>> Mikhail Isakov (1):
>>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>

From blowekamp at mail.nih.gov  Mon Nov  9 09:45:45 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Mon, 09 Nov 2015 09:45:45 -0500
Subject: [ITK-dev] Patches for the 4.8.2 release
In-Reply-To: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
Message-ID: <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>

We should consider this:
http://review.source.kitware.com/#/c/20369/

This helps with using VS2015 GUI.


On Nov 9, 2015, at 9:28 AM, Matt McCormick <matt.mccormick at kitware.com> wrote:

> Hi,
> 
> It is time to make the 4.8.2 release. The following patches are new on
> the release branch since 4.8.1.  Is there anything missing?
> 
> Thanks,
> Matt
> 
> Bradley Lowekamp (4):
>      BUG: Avoid potential exception in itk::Object::UnRegister
>      BUG: Avoid null deference in PrintSelf with default construction
>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
> 
> Davis Vigneault (3):
>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>      DOC: Expanded Canny Edge Detection Example
>      COMP: Warnings in FFTW Classes when compiling with c++11
> 
> Eugene Prilepin (1):
>      BUG: Fix a template name formation in python wrappings
> 
> Hans Johnson (5):
>      STYLE: Minor code style issues for MGHIO
>      COMP: Update to version for WikiExamples
>      ENH: Update Sphinx for ITK 4.8.0
>      ENH: Update MGHIO to be shared lib
>      BUG: Fix MGHIO to fix write failures
> 
> Hyun Jae Kang (4):
>      BUG: Fix HDF5 CMake configuration with VS2015
>      BUG: Remove std::cout calls from class
>      BUG: itkVTKImageIO class does not handle blank lines in VTK file header.
>      BUG: Fixed older XCode linking error
> 
> Matthew McCormick (8):
>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>      COMP: Remove unused argument in ConditionVariableNoThreads.
>      DOC: Correct spelling of Continuous.
>      COMP: Fix KernelTransform SetFixedParameters argument type.
>      STYLE: Use prefix increment operator in ImageBase.
>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>      COMP: Set CMP0054 to new.
> 
> Michka Popoff (1):
>      COMP: Disable incompatible modules when using Python 3 wrapping
> 
> Mikhail Isakov (1):
>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
> _______________________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers


From skalexander at gmail.com  Mon Nov  9 15:18:40 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Mon, 09 Nov 2015 20:18:40 +0000
Subject: [ITK-dev] Patches for the 4.8.2 release
In-Reply-To: <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
Message-ID: <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>

We found this today (patch attached).   If 4.8.2 is right around the
corner, can you consider it for inclusion.  If time isn't so short, I'll
submit the usual way....

cheers,
Simon


On Mon, 9 Nov 2015 at 09:57 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Thanks!  Added.
>
> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp <blowekamp at mail.nih.gov>
> wrote:
> > We should consider this:
> > http://review.source.kitware.com/#/c/20369/
> >
> > This helps with using VS2015 GUI.
> >
> >
> > On Nov 9, 2015, at 9:28 AM, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
> >
> >> Hi,
> >>
> >> It is time to make the 4.8.2 release. The following patches are new on
> >> the release branch since 4.8.1.  Is there anything missing?
> >>
> >> Thanks,
> >> Matt
> >>
> >> Bradley Lowekamp (4):
> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >>      BUG: Avoid null deference in PrintSelf with default construction
> >>      BUG: Use const pointer in Set method for constant ReferenceImage
> ivar
> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
> >>
> >> Davis Vigneault (3):
> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
> >>      DOC: Expanded Canny Edge Detection Example
> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >>
> >> Eugene Prilepin (1):
> >>      BUG: Fix a template name formation in python wrappings
> >>
> >> Hans Johnson (5):
> >>      STYLE: Minor code style issues for MGHIO
> >>      COMP: Update to version for WikiExamples
> >>      ENH: Update Sphinx for ITK 4.8.0
> >>      ENH: Update MGHIO to be shared lib
> >>      BUG: Fix MGHIO to fix write failures
> >>
> >> Hyun Jae Kang (4):
> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >>      BUG: Remove std::cout calls from class
> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> header.
> >>      BUG: Fixed older XCode linking error
> >>
> >> Matthew McCormick (8):
> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >>      DOC: Correct spelling of Continuous.
> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >>      STYLE: Use prefix increment operator in ImageBase.
> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >>      COMP: Set CMP0054 to new.
> >>
> >> Michka Popoff (1):
> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >>
> >> Mikhail Isakov (1):
> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
> >> _______________________________________________
> >> Powered by www.kitware.com
> >>
> >> Visit other Kitware open-source projects at
> >> http://www.kitware.com/opensource/opensource.html
> >>
> >> Kitware offers ITK Training Courses, for more information visit:
> >> http://kitware.com/products/protraining.php
> >>
> >> Please keep messages on-topic and check the ITK FAQ at:
> >> http://www.itk.org/Wiki/ITK_FAQ
> >>
> >> Follow this link to subscribe/unsubscribe:
> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
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From dzenanz at gmail.com  Mon Nov  9 15:54:04 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 9 Nov 2015 15:54:04 -0500
Subject: [ITK-dev] [ITK]  Patches for the 4.8.2 release
In-Reply-To: <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
Message-ID: <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>

Better submit the usual way. I doubt Matt will include it without the usual
testing. Add me and Matt as reviewers.

Regards,
D?enan

On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <skalexander at gmail.com>
wrote:

> We found this today (patch attached).   If 4.8.2 is right around the
> corner, can you consider it for inclusion.  If time isn't so short, I'll
> submit the usual way....
>
> cheers,
> Simon
>
>
>
> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
>> Thanks!  Added.
>>
>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp <blowekamp at mail.nih.gov>
>> wrote:
>> > We should consider this:
>> > http://review.source.kitware.com/#/c/20369/
>> >
>> > This helps with using VS2015 GUI.
>> >
>> >
>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>> >
>> >> Hi,
>> >>
>> >> It is time to make the 4.8.2 release. The following patches are new on
>> >> the release branch since 4.8.1.  Is there anything missing?
>> >>
>> >> Thanks,
>> >> Matt
>> >>
>> >> Bradley Lowekamp (4):
>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >>      BUG: Avoid null deference in PrintSelf with default construction
>> >>      BUG: Use const pointer in Set method for constant ReferenceImage
>> ivar
>> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>> range
>> >>
>> >> Davis Vigneault (3):
>> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>> >>      DOC: Expanded Canny Edge Detection Example
>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >>
>> >> Eugene Prilepin (1):
>> >>      BUG: Fix a template name formation in python wrappings
>> >>
>> >> Hans Johnson (5):
>> >>      STYLE: Minor code style issues for MGHIO
>> >>      COMP: Update to version for WikiExamples
>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >>      ENH: Update MGHIO to be shared lib
>> >>      BUG: Fix MGHIO to fix write failures
>> >>
>> >> Hyun Jae Kang (4):
>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >>      BUG: Remove std::cout calls from class
>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> header.
>> >>      BUG: Fixed older XCode linking error
>> >>
>> >> Matthew McCormick (8):
>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >>      DOC: Correct spelling of Continuous.
>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >>      COMP: Set CMP0054 to new.
>> >>
>> >> Michka Popoff (1):
>> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >>
>> >> Mikhail Isakov (1):
>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
>> >> _______________________________________________
>> >> Powered by www.kitware.com
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Kitware offers ITK Training Courses, for more information visit:
>> >> http://kitware.com/products/protraining.php
>> >>
>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >>
>> >> Follow this link to subscribe/unsubscribe:
>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
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From matt.mccormick at kitware.com  Mon Nov  9 16:19:05 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 9 Nov 2015 16:19:05 -0500
Subject: [ITK-dev] [ITK]  Patches for the 4.8.2 release
In-Reply-To: <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
Message-ID: <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>

Thanks for the patch, Simon! Yes, we can wait until this patch is
merged to make the release. As Dzenan recommends, please submit the
patch to Gerrit with a verification for
itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.

Thanks,
Matt

On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
> Better submit the usual way. I doubt Matt will include it without the usual
> testing. Add me and Matt as reviewers.
>
> Regards,
> D?enan
>
> On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>>
>> We found this today (patch attached).   If 4.8.2 is right around the
>> corner, can you consider it for inclusion.  If time isn't so short, I'll
>> submit the usual way....
>>
>> cheers,
>> Simon
>>
>>
>>
>> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>>>
>>> Thanks!  Added.
>>>
>>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp <blowekamp at mail.nih.gov>
>>> wrote:
>>> > We should consider this:
>>> > http://review.source.kitware.com/#/c/20369/
>>> >
>>> > This helps with using VS2015 GUI.
>>> >
>>> >
>>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick <matt.mccormick at kitware.com>
>>> > wrote:
>>> >
>>> >> Hi,
>>> >>
>>> >> It is time to make the 4.8.2 release. The following patches are new on
>>> >> the release branch since 4.8.1.  Is there anything missing?
>>> >>
>>> >> Thanks,
>>> >> Matt
>>> >>
>>> >> Bradley Lowekamp (4):
>>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>> >>      BUG: Avoid null deference in PrintSelf with default construction
>>> >>      BUG: Use const pointer in Set method for constant ReferenceImage
>>> >> ivar
>>> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>>> >> range
>>> >>
>>> >> Davis Vigneault (3):
>>> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>> >>      DOC: Expanded Canny Edge Detection Example
>>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>> >>
>>> >> Eugene Prilepin (1):
>>> >>      BUG: Fix a template name formation in python wrappings
>>> >>
>>> >> Hans Johnson (5):
>>> >>      STYLE: Minor code style issues for MGHIO
>>> >>      COMP: Update to version for WikiExamples
>>> >>      ENH: Update Sphinx for ITK 4.8.0
>>> >>      ENH: Update MGHIO to be shared lib
>>> >>      BUG: Fix MGHIO to fix write failures
>>> >>
>>> >> Hyun Jae Kang (4):
>>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>> >>      BUG: Remove std::cout calls from class
>>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>>> >> header.
>>> >>      BUG: Fixed older XCode linking error
>>> >>
>>> >> Matthew McCormick (8):
>>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>> >>      DOC: Correct spelling of Continuous.
>>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>> >>      STYLE: Use prefix increment operator in ImageBase.
>>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>> >>      COMP: Set CMP0054 to new.
>>> >>
>>> >> Michka Popoff (1):
>>> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>>> >>
>>> >> Mikhail Isakov (1):
>>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>>> >> image
>>> >> _______________________________________________
>>> >> Powered by www.kitware.com
>>> >>
>>> >> Visit other Kitware open-source projects at
>>> >> http://www.kitware.com/opensource/opensource.html
>>> >>
>>> >> Kitware offers ITK Training Courses, for more information visit:
>>> >> http://kitware.com/products/protraining.php
>>> >>
>>> >> Please keep messages on-topic and check the ITK FAQ at:
>>> >> http://www.itk.org/Wiki/ITK_FAQ
>>> >>
>>> >> Follow this link to subscribe/unsubscribe:
>>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>>> >
>>> _______________________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://kitware.com/products/protraining.php
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>>
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>

From skalexander at gmail.com  Mon Nov  9 16:40:40 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Mon, 09 Nov 2015 21:40:40 +0000
Subject: [ITK-dev] [ITK]  Patches for the 4.8.2 release
In-Reply-To: <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
Message-ID: <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>

Ok, I'll dig up my notes on how to do that and submit it shortly. Should
this be done against trunk or a release branch ?

On Mon, 9 Nov 2015 at 16:19 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Thanks for the patch, Simon! Yes, we can wait until this patch is
> merged to make the release. As Dzenan recommends, please submit the
> patch to Gerrit with a verification for
> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
>
> Thanks,
> Matt
>
> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
> > Better submit the usual way. I doubt Matt will include it without the
> usual
> > testing. Add me and Matt as reviewers.
> >
> > Regards,
> > D?enan
> >
> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <skalexander at gmail.com>
> > wrote:
> >>
> >> We found this today (patch attached).   If 4.8.2 is right around the
> >> corner, can you consider it for inclusion.  If time isn't so short, I'll
> >> submit the usual way....
> >>
> >> cheers,
> >> Simon
> >>
> >>
> >>
> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <matt.mccormick at kitware.com>
> >> wrote:
> >>>
> >>> Thanks!  Added.
> >>>
> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp <
> blowekamp at mail.nih.gov>
> >>> wrote:
> >>> > We should consider this:
> >>> > http://review.source.kitware.com/#/c/20369/
> >>> >
> >>> > This helps with using VS2015 GUI.
> >>> >
> >>> >
> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick <
> matt.mccormick at kitware.com>
> >>> > wrote:
> >>> >
> >>> >> Hi,
> >>> >>
> >>> >> It is time to make the 4.8.2 release. The following patches are new
> on
> >>> >> the release branch since 4.8.1.  Is there anything missing?
> >>> >>
> >>> >> Thanks,
> >>> >> Matt
> >>> >>
> >>> >> Bradley Lowekamp (4):
> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >>> >>      BUG: Avoid null deference in PrintSelf with default
> construction
> >>> >>      BUG: Use const pointer in Set method for constant
> ReferenceImage
> >>> >> ivar
> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
> >>> >> range
> >>> >>
> >>> >> Davis Vigneault (3):
> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
> >>> >>      DOC: Expanded Canny Edge Detection Example
> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >>> >>
> >>> >> Eugene Prilepin (1):
> >>> >>      BUG: Fix a template name formation in python wrappings
> >>> >>
> >>> >> Hans Johnson (5):
> >>> >>      STYLE: Minor code style issues for MGHIO
> >>> >>      COMP: Update to version for WikiExamples
> >>> >>      ENH: Update Sphinx for ITK 4.8.0
> >>> >>      ENH: Update MGHIO to be shared lib
> >>> >>      BUG: Fix MGHIO to fix write failures
> >>> >>
> >>> >> Hyun Jae Kang (4):
> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >>> >>      BUG: Remove std::cout calls from class
> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
> file
> >>> >> header.
> >>> >>      BUG: Fixed older XCode linking error
> >>> >>
> >>> >> Matthew McCormick (8):
> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >>> >>      DOC: Correct spelling of Continuous.
> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >>> >>      STYLE: Use prefix increment operator in ImageBase.
> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >>> >>      COMP: Set CMP0054 to new.
> >>> >>
> >>> >> Michka Popoff (1):
> >>> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >>> >>
> >>> >> Mikhail Isakov (1):
> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
> >>> >> image
> >>> >> _______________________________________________
> >>> >> Powered by www.kitware.com
> >>> >>
> >>> >> Visit other Kitware open-source projects at
> >>> >> http://www.kitware.com/opensource/opensource.html
> >>> >>
> >>> >> Kitware offers ITK Training Courses, for more information visit:
> >>> >> http://kitware.com/products/protraining.php
> >>> >>
> >>> >> Please keep messages on-topic and check the ITK FAQ at:
> >>> >> http://www.itk.org/Wiki/ITK_FAQ
> >>> >>
> >>> >> Follow this link to subscribe/unsubscribe:
> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >>> >
> >>> _______________________________________________
> >>> Powered by www.kitware.com
> >>>
> >>> Visit other Kitware open-source projects at
> >>> http://www.kitware.com/opensource/opensource.html
> >>>
> >>> Kitware offers ITK Training Courses, for more information visit:
> >>> http://kitware.com/products/protraining.php
> >>>
> >>> Please keep messages on-topic and check the ITK FAQ at:
> >>> http://www.itk.org/Wiki/ITK_FAQ
> >>>
> >>> Follow this link to subscribe/unsubscribe:
> >>> http://public.kitware.com/mailman/listinfo/insight-developers
> >>
> >>
> >> _______________________________________________
> >> Powered by www.kitware.com
> >>
> >> Visit other Kitware open-source projects at
> >> http://www.kitware.com/opensource/opensource.html
> >>
> >> Kitware offers ITK Training Courses, for more information visit:
> >> http://kitware.com/products/protraining.php
> >>
> >> Please keep messages on-topic and check the ITK FAQ at:
> >> http://www.itk.org/Wiki/ITK_FAQ
> >>
> >> Follow this link to subscribe/unsubscribe:
> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >>
> >> _______________________________________________
> >> Community mailing list
> >> Community at itk.org
> >> http://public.kitware.com/mailman/listinfo/community
> >>
> >
>
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From matt.mccormick at kitware.com  Mon Nov  9 17:08:01 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 9 Nov 2015 17:08:01 -0500
Subject: [ITK-dev] [ITK]  Patches for the 4.8.2 release
In-Reply-To: <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
Message-ID: <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>

Great!

Instructions can be found here:

  http://www.itk.org/Wiki/ITK/Git

Please branch off of the "release" branch.

Thanks,
Matt

On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com> wrote:
> Ok, I'll dig up my notes on how to do that and submit it shortly. Should
> this be done against trunk or a release branch ?
>
> On Mon, 9 Nov 2015 at 16:19 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Thanks for the patch, Simon! Yes, we can wait until this patch is
>> merged to make the release. As Dzenan recommends, please submit the
>> patch to Gerrit with a verification for
>> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
>>
>> Thanks,
>> Matt
>>
>> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
>> > Better submit the usual way. I doubt Matt will include it without the
>> > usual
>> > testing. Add me and Matt as reviewers.
>> >
>> > Regards,
>> > D?enan
>> >
>> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <skalexander at gmail.com>
>> > wrote:
>> >>
>> >> We found this today (patch attached).   If 4.8.2 is right around the
>> >> corner, can you consider it for inclusion.  If time isn't so short,
>> >> I'll
>> >> submit the usual way....
>> >>
>> >> cheers,
>> >> Simon
>> >>
>> >>
>> >>
>> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <matt.mccormick at kitware.com>
>> >> wrote:
>> >>>
>> >>> Thanks!  Added.
>> >>>
>> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
>> >>> <blowekamp at mail.nih.gov>
>> >>> wrote:
>> >>> > We should consider this:
>> >>> > http://review.source.kitware.com/#/c/20369/
>> >>> >
>> >>> > This helps with using VS2015 GUI.
>> >>> >
>> >>> >
>> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
>> >>> > <matt.mccormick at kitware.com>
>> >>> > wrote:
>> >>> >
>> >>> >> Hi,
>> >>> >>
>> >>> >> It is time to make the 4.8.2 release. The following patches are new
>> >>> >> on
>> >>> >> the release branch since 4.8.1.  Is there anything missing?
>> >>> >>
>> >>> >> Thanks,
>> >>> >> Matt
>> >>> >>
>> >>> >> Bradley Lowekamp (4):
>> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >>> >>      BUG: Avoid null deference in PrintSelf with default
>> >>> >> construction
>> >>> >>      BUG: Use const pointer in Set method for constant
>> >>> >> ReferenceImage
>> >>> >> ivar
>> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>> >>> >> range
>> >>> >>
>> >>> >> Davis Vigneault (3):
>> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>> >>> >>      DOC: Expanded Canny Edge Detection Example
>> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >>> >>
>> >>> >> Eugene Prilepin (1):
>> >>> >>      BUG: Fix a template name formation in python wrappings
>> >>> >>
>> >>> >> Hans Johnson (5):
>> >>> >>      STYLE: Minor code style issues for MGHIO
>> >>> >>      COMP: Update to version for WikiExamples
>> >>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >>> >>      ENH: Update MGHIO to be shared lib
>> >>> >>      BUG: Fix MGHIO to fix write failures
>> >>> >>
>> >>> >> Hyun Jae Kang (4):
>> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >>> >>      BUG: Remove std::cout calls from class
>> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>> >>> >> file
>> >>> >> header.
>> >>> >>      BUG: Fixed older XCode linking error
>> >>> >>
>> >>> >> Matthew McCormick (8):
>> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >>> >>      DOC: Correct spelling of Continuous.
>> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>> >>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >>> >>      COMP: Set CMP0054 to new.
>> >>> >>
>> >>> >> Michka Popoff (1):
>> >>> >>      COMP: Disable incompatible modules when using Python 3
>> >>> >> wrapping
>> >>> >>
>> >>> >> Mikhail Isakov (1):
>> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>> >>> >> image
>> >>> >> _______________________________________________
>> >>> >> Powered by www.kitware.com
>> >>> >>
>> >>> >> Visit other Kitware open-source projects at
>> >>> >> http://www.kitware.com/opensource/opensource.html
>> >>> >>
>> >>> >> Kitware offers ITK Training Courses, for more information visit:
>> >>> >> http://kitware.com/products/protraining.php
>> >>> >>
>> >>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >>> >>
>> >>> >> Follow this link to subscribe/unsubscribe:
>> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >>> >
>> >>> _______________________________________________
>> >>> Powered by www.kitware.com
>> >>>
>> >>> Visit other Kitware open-source projects at
>> >>> http://www.kitware.com/opensource/opensource.html
>> >>>
>> >>> Kitware offers ITK Training Courses, for more information visit:
>> >>> http://kitware.com/products/protraining.php
>> >>>
>> >>> Please keep messages on-topic and check the ITK FAQ at:
>> >>> http://www.itk.org/Wiki/ITK_FAQ
>> >>>
>> >>> Follow this link to subscribe/unsubscribe:
>> >>> http://public.kitware.com/mailman/listinfo/insight-developers
>> >>
>> >>
>> >> _______________________________________________
>> >> Powered by www.kitware.com
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Kitware offers ITK Training Courses, for more information visit:
>> >> http://kitware.com/products/protraining.php
>> >>
>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >>
>> >> Follow this link to subscribe/unsubscribe:
>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >>
>> >> _______________________________________________
>> >> Community mailing list
>> >> Community at itk.org
>> >> http://public.kitware.com/mailman/listinfo/community
>> >>
>> >

From skalexander at gmail.com  Mon Nov  9 17:16:44 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Mon, 09 Nov 2015 22:16:44 +0000
Subject: [ITK-dev] [ITK]  Patches for the 4.8.2 release
In-Reply-To: <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
Message-ID: <CAJFNcCQFK9HGv0wO7+9zK_xZqjRNJD6nCr37GnCgVoC2jheiPw@mail.gmail.com>

Ok, I'll try and do this tomorrow AM.

Unless I'm missing something, currently the test code does not test the
"closest point" output at all - if we are to add a useful case we'll have
to construct an example where the correct set of of barycentric co-ords
exist to exercise that branch.

On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Great!
>
> Instructions can be found here:
>
>   http://www.itk.org/Wiki/ITK/Git
>
> Please branch off of the "release" branch.
>
> Thanks,
> Matt
>
> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > Ok, I'll dig up my notes on how to do that and submit it shortly. Should
> > this be done against trunk or a release branch ?
> >
> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
> >> merged to make the release. As Dzenan recommends, please submit the
> >> patch to Gerrit with a verification for
> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
> >>
> >> Thanks,
> >> Matt
> >>
> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
> >> > Better submit the usual way. I doubt Matt will include it without the
> >> > usual
> >> > testing. Add me and Matt as reviewers.
> >> >
> >> > Regards,
> >> > D?enan
> >> >
> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <
> skalexander at gmail.com>
> >> > wrote:
> >> >>
> >> >> We found this today (patch attached).   If 4.8.2 is right around the
> >> >> corner, can you consider it for inclusion.  If time isn't so short,
> >> >> I'll
> >> >> submit the usual way....
> >> >>
> >> >> cheers,
> >> >> Simon
> >> >>
> >> >>
> >> >>
> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <
> matt.mccormick at kitware.com>
> >> >> wrote:
> >> >>>
> >> >>> Thanks!  Added.
> >> >>>
> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
> >> >>> <blowekamp at mail.nih.gov>
> >> >>> wrote:
> >> >>> > We should consider this:
> >> >>> > http://review.source.kitware.com/#/c/20369/
> >> >>> >
> >> >>> > This helps with using VS2015 GUI.
> >> >>> >
> >> >>> >
> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
> >> >>> > <matt.mccormick at kitware.com>
> >> >>> > wrote:
> >> >>> >
> >> >>> >> Hi,
> >> >>> >>
> >> >>> >> It is time to make the 4.8.2 release. The following patches are
> new
> >> >>> >> on
> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
> >> >>> >>
> >> >>> >> Thanks,
> >> >>> >> Matt
> >> >>> >>
> >> >>> >> Bradley Lowekamp (4):
> >> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
> >> >>> >> construction
> >> >>> >>      BUG: Use const pointer in Set method for constant
> >> >>> >> ReferenceImage
> >> >>> >> ivar
> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
> Threshold
> >> >>> >> range
> >> >>> >>
> >> >>> >> Davis Vigneault (3):
> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
> c++11
> >> >>> >>      DOC: Expanded Canny Edge Detection Example
> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >> >>> >>
> >> >>> >> Eugene Prilepin (1):
> >> >>> >>      BUG: Fix a template name formation in python wrappings
> >> >>> >>
> >> >>> >> Hans Johnson (5):
> >> >>> >>      STYLE: Minor code style issues for MGHIO
> >> >>> >>      COMP: Update to version for WikiExamples
> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
> >> >>> >>      ENH: Update MGHIO to be shared lib
> >> >>> >>      BUG: Fix MGHIO to fix write failures
> >> >>> >>
> >> >>> >> Hyun Jae Kang (4):
> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >> >>> >>      BUG: Remove std::cout calls from class
> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
> >> >>> >> file
> >> >>> >> header.
> >> >>> >>      BUG: Fixed older XCode linking error
> >> >>> >>
> >> >>> >> Matthew McCormick (8):
> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >> >>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >> >>> >>      DOC: Correct spelling of Continuous.
> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
> sys.path
> >> >>> >>      COMP: Set CMP0054 to new.
> >> >>> >>
> >> >>> >> Michka Popoff (1):
> >> >>> >>      COMP: Disable incompatible modules when using Python 3
> >> >>> >> wrapping
> >> >>> >>
> >> >>> >> Mikhail Isakov (1):
> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
> >> >>> >> image
> >> >>> >> _______________________________________________
> >> >>> >> Powered by www.kitware.com
> >> >>> >>
> >> >>> >> Visit other Kitware open-source projects at
> >> >>> >> http://www.kitware.com/opensource/opensource.html
> >> >>> >>
> >> >>> >> Kitware offers ITK Training Courses, for more information visit:
> >> >>> >> http://kitware.com/products/protraining.php
> >> >>> >>
> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >>> >>
> >> >>> >> Follow this link to subscribe/unsubscribe:
> >> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>> >
> >> >>> _______________________________________________
> >> >>> Powered by www.kitware.com
> >> >>>
> >> >>> Visit other Kitware open-source projects at
> >> >>> http://www.kitware.com/opensource/opensource.html
> >> >>>
> >> >>> Kitware offers ITK Training Courses, for more information visit:
> >> >>> http://kitware.com/products/protraining.php
> >> >>>
> >> >>> Please keep messages on-topic and check the ITK FAQ at:
> >> >>> http://www.itk.org/Wiki/ITK_FAQ
> >> >>>
> >> >>> Follow this link to subscribe/unsubscribe:
> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>
> >> >>
> >> >> _______________________________________________
> >> >> Powered by www.kitware.com
> >> >>
> >> >> Visit other Kitware open-source projects at
> >> >> http://www.kitware.com/opensource/opensource.html
> >> >>
> >> >> Kitware offers ITK Training Courses, for more information visit:
> >> >> http://kitware.com/products/protraining.php
> >> >>
> >> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >>
> >> >> Follow this link to subscribe/unsubscribe:
> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>
> >> >> _______________________________________________
> >> >> Community mailing list
> >> >> Community at itk.org
> >> >> http://public.kitware.com/mailman/listinfo/community
> >> >>
> >> >
>
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From skalexander at gmail.com  Tue Nov 10 11:35:48 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Tue, 10 Nov 2015 16:35:48 +0000
Subject: [ITK-dev] [ITK]  Patches for the 4.8.2 release
In-Reply-To: <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
Message-ID: <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>

Ok, I have a patch ready off the release branch.

I don't think I have push access for gerrit though, is there a way to just
start a review from a patch that I am missing in the linked docs?

On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Great!
>
> Instructions can be found here:
>
>   http://www.itk.org/Wiki/ITK/Git
>
> Please branch off of the "release" branch.
>
> Thanks,
> Matt
>
> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > Ok, I'll dig up my notes on how to do that and submit it shortly. Should
> > this be done against trunk or a release branch ?
> >
> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
> >> merged to make the release. As Dzenan recommends, please submit the
> >> patch to Gerrit with a verification for
> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
> >>
> >> Thanks,
> >> Matt
> >>
> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
> >> > Better submit the usual way. I doubt Matt will include it without the
> >> > usual
> >> > testing. Add me and Matt as reviewers.
> >> >
> >> > Regards,
> >> > D?enan
> >> >
> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <
> skalexander at gmail.com>
> >> > wrote:
> >> >>
> >> >> We found this today (patch attached).   If 4.8.2 is right around the
> >> >> corner, can you consider it for inclusion.  If time isn't so short,
> >> >> I'll
> >> >> submit the usual way....
> >> >>
> >> >> cheers,
> >> >> Simon
> >> >>
> >> >>
> >> >>
> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <
> matt.mccormick at kitware.com>
> >> >> wrote:
> >> >>>
> >> >>> Thanks!  Added.
> >> >>>
> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
> >> >>> <blowekamp at mail.nih.gov>
> >> >>> wrote:
> >> >>> > We should consider this:
> >> >>> > http://review.source.kitware.com/#/c/20369/
> >> >>> >
> >> >>> > This helps with using VS2015 GUI.
> >> >>> >
> >> >>> >
> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
> >> >>> > <matt.mccormick at kitware.com>
> >> >>> > wrote:
> >> >>> >
> >> >>> >> Hi,
> >> >>> >>
> >> >>> >> It is time to make the 4.8.2 release. The following patches are
> new
> >> >>> >> on
> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
> >> >>> >>
> >> >>> >> Thanks,
> >> >>> >> Matt
> >> >>> >>
> >> >>> >> Bradley Lowekamp (4):
> >> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
> >> >>> >> construction
> >> >>> >>      BUG: Use const pointer in Set method for constant
> >> >>> >> ReferenceImage
> >> >>> >> ivar
> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
> Threshold
> >> >>> >> range
> >> >>> >>
> >> >>> >> Davis Vigneault (3):
> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
> c++11
> >> >>> >>      DOC: Expanded Canny Edge Detection Example
> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >> >>> >>
> >> >>> >> Eugene Prilepin (1):
> >> >>> >>      BUG: Fix a template name formation in python wrappings
> >> >>> >>
> >> >>> >> Hans Johnson (5):
> >> >>> >>      STYLE: Minor code style issues for MGHIO
> >> >>> >>      COMP: Update to version for WikiExamples
> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
> >> >>> >>      ENH: Update MGHIO to be shared lib
> >> >>> >>      BUG: Fix MGHIO to fix write failures
> >> >>> >>
> >> >>> >> Hyun Jae Kang (4):
> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >> >>> >>      BUG: Remove std::cout calls from class
> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
> >> >>> >> file
> >> >>> >> header.
> >> >>> >>      BUG: Fixed older XCode linking error
> >> >>> >>
> >> >>> >> Matthew McCormick (8):
> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >> >>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >> >>> >>      DOC: Correct spelling of Continuous.
> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
> sys.path
> >> >>> >>      COMP: Set CMP0054 to new.
> >> >>> >>
> >> >>> >> Michka Popoff (1):
> >> >>> >>      COMP: Disable incompatible modules when using Python 3
> >> >>> >> wrapping
> >> >>> >>
> >> >>> >> Mikhail Isakov (1):
> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
> >> >>> >> image
> >> >>> >> _______________________________________________
> >> >>> >> Powered by www.kitware.com
> >> >>> >>
> >> >>> >> Visit other Kitware open-source projects at
> >> >>> >> http://www.kitware.com/opensource/opensource.html
> >> >>> >>
> >> >>> >> Kitware offers ITK Training Courses, for more information visit:
> >> >>> >> http://kitware.com/products/protraining.php
> >> >>> >>
> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >>> >>
> >> >>> >> Follow this link to subscribe/unsubscribe:
> >> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>> >
> >> >>> _______________________________________________
> >> >>> Powered by www.kitware.com
> >> >>>
> >> >>> Visit other Kitware open-source projects at
> >> >>> http://www.kitware.com/opensource/opensource.html
> >> >>>
> >> >>> Kitware offers ITK Training Courses, for more information visit:
> >> >>> http://kitware.com/products/protraining.php
> >> >>>
> >> >>> Please keep messages on-topic and check the ITK FAQ at:
> >> >>> http://www.itk.org/Wiki/ITK_FAQ
> >> >>>
> >> >>> Follow this link to subscribe/unsubscribe:
> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>
> >> >>
> >> >> _______________________________________________
> >> >> Powered by www.kitware.com
> >> >>
> >> >> Visit other Kitware open-source projects at
> >> >> http://www.kitware.com/opensource/opensource.html
> >> >>
> >> >> Kitware offers ITK Training Courses, for more information visit:
> >> >> http://kitware.com/products/protraining.php
> >> >>
> >> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >>
> >> >> Follow this link to subscribe/unsubscribe:
> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>
> >> >> _______________________________________________
> >> >> Community mailing list
> >> >> Community at itk.org
> >> >> http://public.kitware.com/mailman/listinfo/community
> >> >>
> >> >
>
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From matt.mccormick at kitware.com  Tue Nov 10 11:59:11 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 10 Nov 2015 11:59:11 -0500
Subject: [ITK-dev] [ITK]  Patches for the 4.8.2 release
In-Reply-To: <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
 <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
Message-ID: <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>

Hi Simon,

Great!

You should be able to sign up for Gerrit, then add your SSH key to
your account and push.  Instructions are here:

  https://cmake.org/Wiki/ITK/Git/Account#Gerrit

Please let us know if you have any issues.

Thanks,
Matt

On Tue, Nov 10, 2015 at 11:35 AM, Simon Alexander <skalexander at gmail.com> wrote:
> Ok, I have a patch ready off the release branch.
>
> I don't think I have push access for gerrit though, is there a way to just
> start a review from a patch that I am missing in the linked docs?
>
> On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Great!
>>
>> Instructions can be found here:
>>
>>   http://www.itk.org/Wiki/ITK/Git
>>
>> Please branch off of the "release" branch.
>>
>> Thanks,
>> Matt
>>
>> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>> > Ok, I'll dig up my notes on how to do that and submit it shortly. Should
>> > this be done against trunk or a release branch ?
>> >
>> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick <matt.mccormick at kitware.com>
>> > wrote:
>> >>
>> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
>> >> merged to make the release. As Dzenan recommends, please submit the
>> >> patch to Gerrit with a verification for
>> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
>> >>
>> >> Thanks,
>> >> Matt
>> >>
>> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
>> >> > Better submit the usual way. I doubt Matt will include it without the
>> >> > usual
>> >> > testing. Add me and Matt as reviewers.
>> >> >
>> >> > Regards,
>> >> > D?enan
>> >> >
>> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander
>> >> > <skalexander at gmail.com>
>> >> > wrote:
>> >> >>
>> >> >> We found this today (patch attached).   If 4.8.2 is right around the
>> >> >> corner, can you consider it for inclusion.  If time isn't so short,
>> >> >> I'll
>> >> >> submit the usual way....
>> >> >>
>> >> >> cheers,
>> >> >> Simon
>> >> >>
>> >> >>
>> >> >>
>> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick
>> >> >> <matt.mccormick at kitware.com>
>> >> >> wrote:
>> >> >>>
>> >> >>> Thanks!  Added.
>> >> >>>
>> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
>> >> >>> <blowekamp at mail.nih.gov>
>> >> >>> wrote:
>> >> >>> > We should consider this:
>> >> >>> > http://review.source.kitware.com/#/c/20369/
>> >> >>> >
>> >> >>> > This helps with using VS2015 GUI.
>> >> >>> >
>> >> >>> >
>> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
>> >> >>> > <matt.mccormick at kitware.com>
>> >> >>> > wrote:
>> >> >>> >
>> >> >>> >> Hi,
>> >> >>> >>
>> >> >>> >> It is time to make the 4.8.2 release. The following patches are
>> >> >>> >> new
>> >> >>> >> on
>> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
>> >> >>> >>
>> >> >>> >> Thanks,
>> >> >>> >> Matt
>> >> >>> >>
>> >> >>> >> Bradley Lowekamp (4):
>> >> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
>> >> >>> >> construction
>> >> >>> >>      BUG: Use const pointer in Set method for constant
>> >> >>> >> ReferenceImage
>> >> >>> >> ivar
>> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
>> >> >>> >> Threshold
>> >> >>> >> range
>> >> >>> >>
>> >> >>> >> Davis Vigneault (3):
>> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
>> >> >>> >> c++11
>> >> >>> >>      DOC: Expanded Canny Edge Detection Example
>> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >> >>> >>
>> >> >>> >> Eugene Prilepin (1):
>> >> >>> >>      BUG: Fix a template name formation in python wrappings
>> >> >>> >>
>> >> >>> >> Hans Johnson (5):
>> >> >>> >>      STYLE: Minor code style issues for MGHIO
>> >> >>> >>      COMP: Update to version for WikiExamples
>> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >> >>> >>      ENH: Update MGHIO to be shared lib
>> >> >>> >>      BUG: Fix MGHIO to fix write failures
>> >> >>> >>
>> >> >>> >> Hyun Jae Kang (4):
>> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >> >>> >>      BUG: Remove std::cout calls from class
>> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>> >> >>> >> file
>> >> >>> >> header.
>> >> >>> >>      BUG: Fixed older XCode linking error
>> >> >>> >>
>> >> >>> >> Matthew McCormick (8):
>> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >> >>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >> >>> >>      DOC: Correct spelling of Continuous.
>> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
>> >> >>> >> sys.path
>> >> >>> >>      COMP: Set CMP0054 to new.
>> >> >>> >>
>> >> >>> >> Michka Popoff (1):
>> >> >>> >>      COMP: Disable incompatible modules when using Python 3
>> >> >>> >> wrapping
>> >> >>> >>
>> >> >>> >> Mikhail Isakov (1):
>> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>> >> >>> >> baseline
>> >> >>> >> image
>> >> >>> >> _______________________________________________
>> >> >>> >> Powered by www.kitware.com
>> >> >>> >>
>> >> >>> >> Visit other Kitware open-source projects at
>> >> >>> >> http://www.kitware.com/opensource/opensource.html
>> >> >>> >>
>> >> >>> >> Kitware offers ITK Training Courses, for more information visit:
>> >> >>> >> http://kitware.com/products/protraining.php
>> >> >>> >>
>> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >> >>> >>
>> >> >>> >> Follow this link to subscribe/unsubscribe:
>> >> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >>> >
>> >> >>> _______________________________________________
>> >> >>> Powered by www.kitware.com
>> >> >>>
>> >> >>> Visit other Kitware open-source projects at
>> >> >>> http://www.kitware.com/opensource/opensource.html
>> >> >>>
>> >> >>> Kitware offers ITK Training Courses, for more information visit:
>> >> >>> http://kitware.com/products/protraining.php
>> >> >>>
>> >> >>> Please keep messages on-topic and check the ITK FAQ at:
>> >> >>> http://www.itk.org/Wiki/ITK_FAQ
>> >> >>>
>> >> >>> Follow this link to subscribe/unsubscribe:
>> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >>
>> >> >>
>> >> >> _______________________________________________
>> >> >> Powered by www.kitware.com
>> >> >>
>> >> >> Visit other Kitware open-source projects at
>> >> >> http://www.kitware.com/opensource/opensource.html
>> >> >>
>> >> >> Kitware offers ITK Training Courses, for more information visit:
>> >> >> http://kitware.com/products/protraining.php
>> >> >>
>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>> >> >>
>> >> >> Follow this link to subscribe/unsubscribe:
>> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >>
>> >> >> _______________________________________________
>> >> >> Community mailing list
>> >> >> Community at itk.org
>> >> >> http://public.kitware.com/mailman/listinfo/community
>> >> >>
>> >> >

From skalexander at gmail.com  Tue Nov 10 12:13:02 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Tue, 10 Nov 2015 17:13:02 +0000
Subject: [ITK-dev] [ITK]  Patches for the 4.8.2 release
In-Reply-To: <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
 <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
 <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>
Message-ID: <CAJFNcCRLyXzCFOW9FR5YXYdGS8iRnGfDSLvkDCT+A3aDS4Afgg@mail.gmail.com>

I had already done that, the problem was elsewhere but I have now sorted it.

Issue is 20301.

I added Matt as reviewer but couldn't find Dzenan in the system.



On Tue, 10 Nov 2015 at 11:59 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Simon,
>
> Great!
>
> You should be able to sign up for Gerrit, then add your SSH key to
> your account and push.  Instructions are here:
>
>   https://cmake.org/Wiki/ITK/Git/Account#Gerrit
>
> Please let us know if you have any issues.
>
> Thanks,
> Matt
>
> On Tue, Nov 10, 2015 at 11:35 AM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > Ok, I have a patch ready off the release branch.
> >
> > I don't think I have push access for gerrit though, is there a way to
> just
> > start a review from a patch that I am missing in the linked docs?
> >
> > On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> Great!
> >>
> >> Instructions can be found here:
> >>
> >>   http://www.itk.org/Wiki/ITK/Git
> >>
> >> Please branch off of the "release" branch.
> >>
> >> Thanks,
> >> Matt
> >>
> >> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com>
> >> wrote:
> >> > Ok, I'll dig up my notes on how to do that and submit it shortly.
> Should
> >> > this be done against trunk or a release branch ?
> >> >
> >> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick <
> matt.mccormick at kitware.com>
> >> > wrote:
> >> >>
> >> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
> >> >> merged to make the release. As Dzenan recommends, please submit the
> >> >> patch to Gerrit with a verification for
> >> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
> >> >>
> >> >> Thanks,
> >> >> Matt
> >> >>
> >> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com>
> wrote:
> >> >> > Better submit the usual way. I doubt Matt will include it without
> the
> >> >> > usual
> >> >> > testing. Add me and Matt as reviewers.
> >> >> >
> >> >> > Regards,
> >> >> > D?enan
> >> >> >
> >> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander
> >> >> > <skalexander at gmail.com>
> >> >> > wrote:
> >> >> >>
> >> >> >> We found this today (patch attached).   If 4.8.2 is right around
> the
> >> >> >> corner, can you consider it for inclusion.  If time isn't so
> short,
> >> >> >> I'll
> >> >> >> submit the usual way....
> >> >> >>
> >> >> >> cheers,
> >> >> >> Simon
> >> >> >>
> >> >> >>
> >> >> >>
> >> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick
> >> >> >> <matt.mccormick at kitware.com>
> >> >> >> wrote:
> >> >> >>>
> >> >> >>> Thanks!  Added.
> >> >> >>>
> >> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
> >> >> >>> <blowekamp at mail.nih.gov>
> >> >> >>> wrote:
> >> >> >>> > We should consider this:
> >> >> >>> > http://review.source.kitware.com/#/c/20369/
> >> >> >>> >
> >> >> >>> > This helps with using VS2015 GUI.
> >> >> >>> >
> >> >> >>> >
> >> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
> >> >> >>> > <matt.mccormick at kitware.com>
> >> >> >>> > wrote:
> >> >> >>> >
> >> >> >>> >> Hi,
> >> >> >>> >>
> >> >> >>> >> It is time to make the 4.8.2 release. The following patches
> are
> >> >> >>> >> new
> >> >> >>> >> on
> >> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
> >> >> >>> >>
> >> >> >>> >> Thanks,
> >> >> >>> >> Matt
> >> >> >>> >>
> >> >> >>> >> Bradley Lowekamp (4):
> >> >> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
> >> >> >>> >> construction
> >> >> >>> >>      BUG: Use const pointer in Set method for constant
> >> >> >>> >> ReferenceImage
> >> >> >>> >> ivar
> >> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
> >> >> >>> >> Threshold
> >> >> >>> >> range
> >> >> >>> >>
> >> >> >>> >> Davis Vigneault (3):
> >> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
> >> >> >>> >> c++11
> >> >> >>> >>      DOC: Expanded Canny Edge Detection Example
> >> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >> >> >>> >>
> >> >> >>> >> Eugene Prilepin (1):
> >> >> >>> >>      BUG: Fix a template name formation in python wrappings
> >> >> >>> >>
> >> >> >>> >> Hans Johnson (5):
> >> >> >>> >>      STYLE: Minor code style issues for MGHIO
> >> >> >>> >>      COMP: Update to version for WikiExamples
> >> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
> >> >> >>> >>      ENH: Update MGHIO to be shared lib
> >> >> >>> >>      BUG: Fix MGHIO to fix write failures
> >> >> >>> >>
> >> >> >>> >> Hyun Jae Kang (4):
> >> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >> >> >>> >>      BUG: Remove std::cout calls from class
> >> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in
> VTK
> >> >> >>> >> file
> >> >> >>> >> header.
> >> >> >>> >>      BUG: Fixed older XCode linking error
> >> >> >>> >>
> >> >> >>> >> Matthew McCormick (8):
> >> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >> >> >>> >>      COMP: Remove unused argument in
> ConditionVariableNoThreads.
> >> >> >>> >>      DOC: Correct spelling of Continuous.
> >> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument
> type.
> >> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
> >> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
> >> >> >>> >> sys.path
> >> >> >>> >>      COMP: Set CMP0054 to new.
> >> >> >>> >>
> >> >> >>> >> Michka Popoff (1):
> >> >> >>> >>      COMP: Disable incompatible modules when using Python 3
> >> >> >>> >> wrapping
> >> >> >>> >>
> >> >> >>> >> Mikhail Isakov (1):
> >> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no
> >> >> >>> >> baseline
> >> >> >>> >> image
> >> >> >>> >> _______________________________________________
> >> >> >>> >> Powered by www.kitware.com
> >> >> >>> >>
> >> >> >>> >> Visit other Kitware open-source projects at
> >> >> >>> >> http://www.kitware.com/opensource/opensource.html
> >> >> >>> >>
> >> >> >>> >> Kitware offers ITK Training Courses, for more information
> visit:
> >> >> >>> >> http://kitware.com/products/protraining.php
> >> >> >>> >>
> >> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >> >>> >>
> >> >> >>> >> Follow this link to subscribe/unsubscribe:
> >> >> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >> >>> >
> >> >> >>> _______________________________________________
> >> >> >>> Powered by www.kitware.com
> >> >> >>>
> >> >> >>> Visit other Kitware open-source projects at
> >> >> >>> http://www.kitware.com/opensource/opensource.html
> >> >> >>>
> >> >> >>> Kitware offers ITK Training Courses, for more information visit:
> >> >> >>> http://kitware.com/products/protraining.php
> >> >> >>>
> >> >> >>> Please keep messages on-topic and check the ITK FAQ at:
> >> >> >>> http://www.itk.org/Wiki/ITK_FAQ
> >> >> >>>
> >> >> >>> Follow this link to subscribe/unsubscribe:
> >> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >> >>
> >> >> >>
> >> >> >> _______________________________________________
> >> >> >> Powered by www.kitware.com
> >> >> >>
> >> >> >> Visit other Kitware open-source projects at
> >> >> >> http://www.kitware.com/opensource/opensource.html
> >> >> >>
> >> >> >> Kitware offers ITK Training Courses, for more information visit:
> >> >> >> http://kitware.com/products/protraining.php
> >> >> >>
> >> >> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >> >>
> >> >> >> Follow this link to subscribe/unsubscribe:
> >> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >> >>
> >> >> >> _______________________________________________
> >> >> >> Community mailing list
> >> >> >> Community at itk.org
> >> >> >> http://public.kitware.com/mailman/listinfo/community
> >> >> >>
> >> >> >
>
-------------- next part --------------
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From skalexander at gmail.com  Tue Nov 10 12:13:52 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Tue, 10 Nov 2015 17:13:52 +0000
Subject: [ITK-dev] [ITK]  Patches for the 4.8.2 release
In-Reply-To: <CAJFNcCRLyXzCFOW9FR5YXYdGS8iRnGfDSLvkDCT+A3aDS4Afgg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
 <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
 <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>
 <CAJFNcCRLyXzCFOW9FR5YXYdGS8iRnGfDSLvkDCT+A3aDS4Afgg@mail.gmail.com>
Message-ID: <CAJFNcCRy4ecqQssKhvWmdfEQ89oiMNoqE6vPBjyAPKjgdwyY5g@mail.gmail.com>

sorry, issue is 20381

On Tue, 10 Nov 2015 at 12:13 Simon Alexander <skalexander at gmail.com> wrote:

> I had already done that, the problem was elsewhere but I have now sorted
> it.
>
> Issue is 20301.
>
> I added Matt as reviewer but couldn't find Dzenan in the system.
>
>
>
> On Tue, 10 Nov 2015 at 11:59 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
>> Hi Simon,
>>
>> Great!
>>
>> You should be able to sign up for Gerrit, then add your SSH key to
>> your account and push.  Instructions are here:
>>
>>   https://cmake.org/Wiki/ITK/Git/Account#Gerrit
>>
>> Please let us know if you have any issues.
>>
>> Thanks,
>> Matt
>>
>> On Tue, Nov 10, 2015 at 11:35 AM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>> > Ok, I have a patch ready off the release branch.
>> >
>> > I don't think I have push access for gerrit though, is there a way to
>> just
>> > start a review from a patch that I am missing in the linked docs?
>> >
>> > On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
>> > wrote:
>> >>
>> >> Great!
>> >>
>> >> Instructions can be found here:
>> >>
>> >>   http://www.itk.org/Wiki/ITK/Git
>> >>
>> >> Please branch off of the "release" branch.
>> >>
>> >> Thanks,
>> >> Matt
>> >>
>> >> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com
>> >
>> >> wrote:
>> >> > Ok, I'll dig up my notes on how to do that and submit it shortly.
>> Should
>> >> > this be done against trunk or a release branch ?
>> >> >
>> >> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick <
>> matt.mccormick at kitware.com>
>> >> > wrote:
>> >> >>
>> >> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
>> >> >> merged to make the release. As Dzenan recommends, please submit the
>> >> >> patch to Gerrit with a verification for
>> >> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
>> >> >>
>> >> >> Thanks,
>> >> >> Matt
>> >> >>
>> >> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com>
>> wrote:
>> >> >> > Better submit the usual way. I doubt Matt will include it without
>> the
>> >> >> > usual
>> >> >> > testing. Add me and Matt as reviewers.
>> >> >> >
>> >> >> > Regards,
>> >> >> > D?enan
>> >> >> >
>> >> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander
>> >> >> > <skalexander at gmail.com>
>> >> >> > wrote:
>> >> >> >>
>> >> >> >> We found this today (patch attached).   If 4.8.2 is right around
>> the
>> >> >> >> corner, can you consider it for inclusion.  If time isn't so
>> short,
>> >> >> >> I'll
>> >> >> >> submit the usual way....
>> >> >> >>
>> >> >> >> cheers,
>> >> >> >> Simon
>> >> >> >>
>> >> >> >>
>> >> >> >>
>> >> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick
>> >> >> >> <matt.mccormick at kitware.com>
>> >> >> >> wrote:
>> >> >> >>>
>> >> >> >>> Thanks!  Added.
>> >> >> >>>
>> >> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
>> >> >> >>> <blowekamp at mail.nih.gov>
>> >> >> >>> wrote:
>> >> >> >>> > We should consider this:
>> >> >> >>> > http://review.source.kitware.com/#/c/20369/
>> >> >> >>> >
>> >> >> >>> > This helps with using VS2015 GUI.
>> >> >> >>> >
>> >> >> >>> >
>> >> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
>> >> >> >>> > <matt.mccormick at kitware.com>
>> >> >> >>> > wrote:
>> >> >> >>> >
>> >> >> >>> >> Hi,
>> >> >> >>> >>
>> >> >> >>> >> It is time to make the 4.8.2 release. The following patches
>> are
>> >> >> >>> >> new
>> >> >> >>> >> on
>> >> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
>> >> >> >>> >>
>> >> >> >>> >> Thanks,
>> >> >> >>> >> Matt
>> >> >> >>> >>
>> >> >> >>> >> Bradley Lowekamp (4):
>> >> >> >>> >>      BUG: Avoid potential exception in
>> itk::Object::UnRegister
>> >> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
>> >> >> >>> >> construction
>> >> >> >>> >>      BUG: Use const pointer in Set method for constant
>> >> >> >>> >> ReferenceImage
>> >> >> >>> >> ivar
>> >> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
>> >> >> >>> >> Threshold
>> >> >> >>> >> range
>> >> >> >>> >>
>> >> >> >>> >> Davis Vigneault (3):
>> >> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
>> >> >> >>> >> c++11
>> >> >> >>> >>      DOC: Expanded Canny Edge Detection Example
>> >> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >> >> >>> >>
>> >> >> >>> >> Eugene Prilepin (1):
>> >> >> >>> >>      BUG: Fix a template name formation in python wrappings
>> >> >> >>> >>
>> >> >> >>> >> Hans Johnson (5):
>> >> >> >>> >>      STYLE: Minor code style issues for MGHIO
>> >> >> >>> >>      COMP: Update to version for WikiExamples
>> >> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >> >> >>> >>      ENH: Update MGHIO to be shared lib
>> >> >> >>> >>      BUG: Fix MGHIO to fix write failures
>> >> >> >>> >>
>> >> >> >>> >> Hyun Jae Kang (4):
>> >> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >> >> >>> >>      BUG: Remove std::cout calls from class
>> >> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in
>> VTK
>> >> >> >>> >> file
>> >> >> >>> >> header.
>> >> >> >>> >>      BUG: Fixed older XCode linking error
>> >> >> >>> >>
>> >> >> >>> >> Matthew McCormick (8):
>> >> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >> >> >>> >>      COMP: Remove unused argument in
>> ConditionVariableNoThreads.
>> >> >> >>> >>      DOC: Correct spelling of Continuous.
>> >> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument
>> type.
>> >> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
>> >> >> >>> >> sys.path
>> >> >> >>> >>      COMP: Set CMP0054 to new.
>> >> >> >>> >>
>> >> >> >>> >> Michka Popoff (1):
>> >> >> >>> >>      COMP: Disable incompatible modules when using Python 3
>> >> >> >>> >> wrapping
>> >> >> >>> >>
>> >> >> >>> >> Mikhail Isakov (1):
>> >> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>> >> >> >>> >> baseline
>> >> >> >>> >> image
>> >> >> >>> >> _______________________________________________
>> >> >> >>> >> Powered by www.kitware.com
>> >> >> >>> >>
>> >> >> >>> >> Visit other Kitware open-source projects at
>> >> >> >>> >> http://www.kitware.com/opensource/opensource.html
>> >> >> >>> >>
>> >> >> >>> >> Kitware offers ITK Training Courses, for more information
>> visit:
>> >> >> >>> >> http://kitware.com/products/protraining.php
>> >> >> >>> >>
>> >> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >> >> >>> >>
>> >> >> >>> >> Follow this link to subscribe/unsubscribe:
>> >> >> >>> >>
>> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >> >>> >
>> >> >> >>> _______________________________________________
>> >> >> >>> Powered by www.kitware.com
>> >> >> >>>
>> >> >> >>> Visit other Kitware open-source projects at
>> >> >> >>> http://www.kitware.com/opensource/opensource.html
>> >> >> >>>
>> >> >> >>> Kitware offers ITK Training Courses, for more information visit:
>> >> >> >>> http://kitware.com/products/protraining.php
>> >> >> >>>
>> >> >> >>> Please keep messages on-topic and check the ITK FAQ at:
>> >> >> >>> http://www.itk.org/Wiki/ITK_FAQ
>> >> >> >>>
>> >> >> >>> Follow this link to subscribe/unsubscribe:
>> >> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >> >>
>> >> >> >>
>> >> >> >> _______________________________________________
>> >> >> >> Powered by www.kitware.com
>> >> >> >>
>> >> >> >> Visit other Kitware open-source projects at
>> >> >> >> http://www.kitware.com/opensource/opensource.html
>> >> >> >>
>> >> >> >> Kitware offers ITK Training Courses, for more information visit:
>> >> >> >> http://kitware.com/products/protraining.php
>> >> >> >>
>> >> >> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> >> >> http://www.itk.org/Wiki/ITK_FAQ
>> >> >> >>
>> >> >> >> Follow this link to subscribe/unsubscribe:
>> >> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >> >>
>> >> >> >> _______________________________________________
>> >> >> >> Community mailing list
>> >> >> >> Community at itk.org
>> >> >> >> http://public.kitware.com/mailman/listinfo/community
>> >> >> >>
>> >> >> >
>>
>
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From matt.mccormick at kitware.com  Tue Nov 10 13:31:28 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 10 Nov 2015 13:31:28 -0500
Subject: [ITK-dev] [ITK]  Patches for the 4.8.2 release
In-Reply-To: <CAJFNcCRy4ecqQssKhvWmdfEQ89oiMNoqE6vPBjyAPKjgdwyY5g@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
 <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
 <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>
 <CAJFNcCRLyXzCFOW9FR5YXYdGS8iRnGfDSLvkDCT+A3aDS4Afgg@mail.gmail.com>
 <CAJFNcCRy4ecqQssKhvWmdfEQ89oiMNoqE6vPBjyAPKjgdwyY5g@mail.gmail.com>
Message-ID: <CALzTN-RZFtHZ_ATYh_qLAvne+9pgf2sr1Rc2jSqFz1D2Su357w@mail.gmail.com>

Excellent, thank you Simon.

The patch has been merged into the master branch.  We will merge it
into the release branch tomorrow if no issues show up on the Nightly
dashboard:

  https://open.cdash.org/index.php?project=Insight

Thanks,
Matt

On Tue, Nov 10, 2015 at 12:13 PM, Simon Alexander <skalexander at gmail.com> wrote:
> sorry, issue is 20381
>
> On Tue, 10 Nov 2015 at 12:13 Simon Alexander <skalexander at gmail.com> wrote:
>>
>> I had already done that, the problem was elsewhere but I have now sorted
>> it.
>>
>> Issue is 20301.
>>
>> I added Matt as reviewer but couldn't find Dzenan in the system.
>>
>>
>>
>> On Tue, 10 Nov 2015 at 11:59 Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>>>
>>> Hi Simon,
>>>
>>> Great!
>>>
>>> You should be able to sign up for Gerrit, then add your SSH key to
>>> your account and push.  Instructions are here:
>>>
>>>   https://cmake.org/Wiki/ITK/Git/Account#Gerrit
>>>
>>> Please let us know if you have any issues.
>>>
>>> Thanks,
>>> Matt
>>>
>>> On Tue, Nov 10, 2015 at 11:35 AM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>> > Ok, I have a patch ready off the release branch.
>>> >
>>> > I don't think I have push access for gerrit though, is there a way to
>>> > just
>>> > start a review from a patch that I am missing in the linked docs?
>>> >
>>> > On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
>>> > wrote:
>>> >>
>>> >> Great!
>>> >>
>>> >> Instructions can be found here:
>>> >>
>>> >>   http://www.itk.org/Wiki/ITK/Git
>>> >>
>>> >> Please branch off of the "release" branch.
>>> >>
>>> >> Thanks,
>>> >> Matt
>>> >>
>>> >> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander
>>> >> <skalexander at gmail.com>
>>> >> wrote:
>>> >> > Ok, I'll dig up my notes on how to do that and submit it shortly.
>>> >> > Should
>>> >> > this be done against trunk or a release branch ?
>>> >> >
>>> >> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick
>>> >> > <matt.mccormick at kitware.com>
>>> >> > wrote:
>>> >> >>
>>> >> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
>>> >> >> merged to make the release. As Dzenan recommends, please submit the
>>> >> >> patch to Gerrit with a verification for
>>> >> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
>>> >> >>
>>> >> >> Thanks,
>>> >> >> Matt
>>> >> >>
>>> >> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com>
>>> >> >> wrote:
>>> >> >> > Better submit the usual way. I doubt Matt will include it without
>>> >> >> > the
>>> >> >> > usual
>>> >> >> > testing. Add me and Matt as reviewers.
>>> >> >> >
>>> >> >> > Regards,
>>> >> >> > D?enan
>>> >> >> >
>>> >> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander
>>> >> >> > <skalexander at gmail.com>
>>> >> >> > wrote:
>>> >> >> >>
>>> >> >> >> We found this today (patch attached).   If 4.8.2 is right around
>>> >> >> >> the
>>> >> >> >> corner, can you consider it for inclusion.  If time isn't so
>>> >> >> >> short,
>>> >> >> >> I'll
>>> >> >> >> submit the usual way....
>>> >> >> >>
>>> >> >> >> cheers,
>>> >> >> >> Simon
>>> >> >> >>
>>> >> >> >>
>>> >> >> >>
>>> >> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick
>>> >> >> >> <matt.mccormick at kitware.com>
>>> >> >> >> wrote:
>>> >> >> >>>
>>> >> >> >>> Thanks!  Added.
>>> >> >> >>>
>>> >> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
>>> >> >> >>> <blowekamp at mail.nih.gov>
>>> >> >> >>> wrote:
>>> >> >> >>> > We should consider this:
>>> >> >> >>> > http://review.source.kitware.com/#/c/20369/
>>> >> >> >>> >
>>> >> >> >>> > This helps with using VS2015 GUI.
>>> >> >> >>> >
>>> >> >> >>> >
>>> >> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
>>> >> >> >>> > <matt.mccormick at kitware.com>
>>> >> >> >>> > wrote:
>>> >> >> >>> >
>>> >> >> >>> >> Hi,
>>> >> >> >>> >>
>>> >> >> >>> >> It is time to make the 4.8.2 release. The following patches
>>> >> >> >>> >> are
>>> >> >> >>> >> new
>>> >> >> >>> >> on
>>> >> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
>>> >> >> >>> >>
>>> >> >> >>> >> Thanks,
>>> >> >> >>> >> Matt
>>> >> >> >>> >>
>>> >> >> >>> >> Bradley Lowekamp (4):
>>> >> >> >>> >>      BUG: Avoid potential exception in
>>> >> >> >>> >> itk::Object::UnRegister
>>> >> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
>>> >> >> >>> >> construction
>>> >> >> >>> >>      BUG: Use const pointer in Set method for constant
>>> >> >> >>> >> ReferenceImage
>>> >> >> >>> >> ivar
>>> >> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>> >> >> >>> >> Threshold
>>> >> >> >>> >> range
>>> >> >> >>> >>
>>> >> >> >>> >> Davis Vigneault (3):
>>> >> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>> >> >> >>> >> c++11
>>> >> >> >>> >>      DOC: Expanded Canny Edge Detection Example
>>> >> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with
>>> >> >> >>> >> c++11
>>> >> >> >>> >>
>>> >> >> >>> >> Eugene Prilepin (1):
>>> >> >> >>> >>      BUG: Fix a template name formation in python wrappings
>>> >> >> >>> >>
>>> >> >> >>> >> Hans Johnson (5):
>>> >> >> >>> >>      STYLE: Minor code style issues for MGHIO
>>> >> >> >>> >>      COMP: Update to version for WikiExamples
>>> >> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
>>> >> >> >>> >>      ENH: Update MGHIO to be shared lib
>>> >> >> >>> >>      BUG: Fix MGHIO to fix write failures
>>> >> >> >>> >>
>>> >> >> >>> >> Hyun Jae Kang (4):
>>> >> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>> >> >> >>> >>      BUG: Remove std::cout calls from class
>>> >> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>> >> >> >>> >> VTK
>>> >> >> >>> >> file
>>> >> >> >>> >> header.
>>> >> >> >>> >>      BUG: Fixed older XCode linking error
>>> >> >> >>> >>
>>> >> >> >>> >> Matthew McCormick (8):
>>> >> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>> >> >> >>> >>      COMP: Remove unused argument in
>>> >> >> >>> >> ConditionVariableNoThreads.
>>> >> >> >>> >>      DOC: Correct spelling of Continuous.
>>> >> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument
>>> >> >> >>> >> type.
>>> >> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
>>> >> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>> >> >> >>> >> sys.path
>>> >> >> >>> >>      COMP: Set CMP0054 to new.
>>> >> >> >>> >>
>>> >> >> >>> >> Michka Popoff (1):
>>> >> >> >>> >>      COMP: Disable incompatible modules when using Python 3
>>> >> >> >>> >> wrapping
>>> >> >> >>> >>
>>> >> >> >>> >> Mikhail Isakov (1):
>>> >> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>> >> >> >>> >> baseline
>>> >> >> >>> >> image
>>> >> >> >>> >> _______________________________________________
>>> >> >> >>> >> Powered by www.kitware.com
>>> >> >> >>> >>
>>> >> >> >>> >> Visit other Kitware open-source projects at
>>> >> >> >>> >> http://www.kitware.com/opensource/opensource.html
>>> >> >> >>> >>
>>> >> >> >>> >> Kitware offers ITK Training Courses, for more information
>>> >> >> >>> >> visit:
>>> >> >> >>> >> http://kitware.com/products/protraining.php
>>> >> >> >>> >>
>>> >> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
>>> >> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
>>> >> >> >>> >>
>>> >> >> >>> >> Follow this link to subscribe/unsubscribe:
>>> >> >> >>> >>
>>> >> >> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>>> >> >> >>> >
>>> >> >> >>> _______________________________________________
>>> >> >> >>> Powered by www.kitware.com
>>> >> >> >>>
>>> >> >> >>> Visit other Kitware open-source projects at
>>> >> >> >>> http://www.kitware.com/opensource/opensource.html
>>> >> >> >>>
>>> >> >> >>> Kitware offers ITK Training Courses, for more information
>>> >> >> >>> visit:
>>> >> >> >>> http://kitware.com/products/protraining.php
>>> >> >> >>>
>>> >> >> >>> Please keep messages on-topic and check the ITK FAQ at:
>>> >> >> >>> http://www.itk.org/Wiki/ITK_FAQ
>>> >> >> >>>
>>> >> >> >>> Follow this link to subscribe/unsubscribe:
>>> >> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
>>> >> >> >>
>>> >> >> >>
>>> >> >> >> _______________________________________________
>>> >> >> >> Powered by www.kitware.com
>>> >> >> >>
>>> >> >> >> Visit other Kitware open-source projects at
>>> >> >> >> http://www.kitware.com/opensource/opensource.html
>>> >> >> >>
>>> >> >> >> Kitware offers ITK Training Courses, for more information visit:
>>> >> >> >> http://kitware.com/products/protraining.php
>>> >> >> >>
>>> >> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>> >> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>> >> >> >>
>>> >> >> >> Follow this link to subscribe/unsubscribe:
>>> >> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
>>> >> >> >>
>>> >> >> >> _______________________________________________
>>> >> >> >> Community mailing list
>>> >> >> >> Community at itk.org
>>> >> >> >> http://public.kitware.com/mailman/listinfo/community
>>> >> >> >>
>>> >> >> >

From skalexander at gmail.com  Tue Nov 10 13:42:03 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Tue, 10 Nov 2015 18:42:03 +0000
Subject: [ITK-dev] [ITK]  Patches for the 4.8.2 release
In-Reply-To: <CALzTN-RZFtHZ_ATYh_qLAvne+9pgf2sr1Rc2jSqFz1D2Su357w@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
 <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
 <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>
 <CAJFNcCRLyXzCFOW9FR5YXYdGS8iRnGfDSLvkDCT+A3aDS4Afgg@mail.gmail.com>
 <CAJFNcCRy4ecqQssKhvWmdfEQ89oiMNoqE6vPBjyAPKjgdwyY5g@mail.gmail.com>
 <CALzTN-RZFtHZ_ATYh_qLAvne+9pgf2sr1Rc2jSqFz1D2Su357w@mail.gmail.com>
Message-ID: <CAJFNcCS7exinFnkH-gwRHShkk2XXN+S20gYcLXZdk8f+Z0wvpw@mail.gmail.com>

Thanks, all.

On Tue, 10 Nov 2015 at 13:31 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Excellent, thank you Simon.
>
> The patch has been merged into the master branch.  We will merge it
> into the release branch tomorrow if no issues show up on the Nightly
> dashboard:
>
>   https://open.cdash.org/index.php?project=Insight
>
> Thanks,
> Matt
>
> On Tue, Nov 10, 2015 at 12:13 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > sorry, issue is 20381
> >
> > On Tue, 10 Nov 2015 at 12:13 Simon Alexander <skalexander at gmail.com>
> wrote:
> >>
> >> I had already done that, the problem was elsewhere but I have now sorted
> >> it.
> >>
> >> Issue is 20301.
> >>
> >> I added Matt as reviewer but couldn't find Dzenan in the system.
> >>
> >>
> >>
> >> On Tue, 10 Nov 2015 at 11:59 Matt McCormick <matt.mccormick at kitware.com
> >
> >> wrote:
> >>>
> >>> Hi Simon,
> >>>
> >>> Great!
> >>>
> >>> You should be able to sign up for Gerrit, then add your SSH key to
> >>> your account and push.  Instructions are here:
> >>>
> >>>   https://cmake.org/Wiki/ITK/Git/Account#Gerrit
> >>>
> >>> Please let us know if you have any issues.
> >>>
> >>> Thanks,
> >>> Matt
> >>>
> >>> On Tue, Nov 10, 2015 at 11:35 AM, Simon Alexander <
> skalexander at gmail.com>
> >>> wrote:
> >>> > Ok, I have a patch ready off the release branch.
> >>> >
> >>> > I don't think I have push access for gerrit though, is there a way to
> >>> > just
> >>> > start a review from a patch that I am missing in the linked docs?
> >>> >
> >>> > On Mon, 9 Nov 2015 at 17:08 Matt McCormick <
> matt.mccormick at kitware.com>
> >>> > wrote:
> >>> >>
> >>> >> Great!
> >>> >>
> >>> >> Instructions can be found here:
> >>> >>
> >>> >>   http://www.itk.org/Wiki/ITK/Git
> >>> >>
> >>> >> Please branch off of the "release" branch.
> >>> >>
> >>> >> Thanks,
> >>> >> Matt
> >>> >>
> >>> >> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander
> >>> >> <skalexander at gmail.com>
> >>> >> wrote:
> >>> >> > Ok, I'll dig up my notes on how to do that and submit it shortly.
> >>> >> > Should
> >>> >> > this be done against trunk or a release branch ?
> >>> >> >
> >>> >> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick
> >>> >> > <matt.mccormick at kitware.com>
> >>> >> > wrote:
> >>> >> >>
> >>> >> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
> >>> >> >> merged to make the release. As Dzenan recommends, please submit
> the
> >>> >> >> patch to Gerrit with a verification for
> >>> >> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
> >>> >> >>
> >>> >> >> Thanks,
> >>> >> >> Matt
> >>> >> >>
> >>> >> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com>
> >>> >> >> wrote:
> >>> >> >> > Better submit the usual way. I doubt Matt will include it
> without
> >>> >> >> > the
> >>> >> >> > usual
> >>> >> >> > testing. Add me and Matt as reviewers.
> >>> >> >> >
> >>> >> >> > Regards,
> >>> >> >> > D?enan
> >>> >> >> >
> >>> >> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander
> >>> >> >> > <skalexander at gmail.com>
> >>> >> >> > wrote:
> >>> >> >> >>
> >>> >> >> >> We found this today (patch attached).   If 4.8.2 is right
> around
> >>> >> >> >> the
> >>> >> >> >> corner, can you consider it for inclusion.  If time isn't so
> >>> >> >> >> short,
> >>> >> >> >> I'll
> >>> >> >> >> submit the usual way....
> >>> >> >> >>
> >>> >> >> >> cheers,
> >>> >> >> >> Simon
> >>> >> >> >>
> >>> >> >> >>
> >>> >> >> >>
> >>> >> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick
> >>> >> >> >> <matt.mccormick at kitware.com>
> >>> >> >> >> wrote:
> >>> >> >> >>>
> >>> >> >> >>> Thanks!  Added.
> >>> >> >> >>>
> >>> >> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
> >>> >> >> >>> <blowekamp at mail.nih.gov>
> >>> >> >> >>> wrote:
> >>> >> >> >>> > We should consider this:
> >>> >> >> >>> > http://review.source.kitware.com/#/c/20369/
> >>> >> >> >>> >
> >>> >> >> >>> > This helps with using VS2015 GUI.
> >>> >> >> >>> >
> >>> >> >> >>> >
> >>> >> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
> >>> >> >> >>> > <matt.mccormick at kitware.com>
> >>> >> >> >>> > wrote:
> >>> >> >> >>> >
> >>> >> >> >>> >> Hi,
> >>> >> >> >>> >>
> >>> >> >> >>> >> It is time to make the 4.8.2 release. The following
> patches
> >>> >> >> >>> >> are
> >>> >> >> >>> >> new
> >>> >> >> >>> >> on
> >>> >> >> >>> >> the release branch since 4.8.1.  Is there anything
> missing?
> >>> >> >> >>> >>
> >>> >> >> >>> >> Thanks,
> >>> >> >> >>> >> Matt
> >>> >> >> >>> >>
> >>> >> >> >>> >> Bradley Lowekamp (4):
> >>> >> >> >>> >>      BUG: Avoid potential exception in
> >>> >> >> >>> >> itk::Object::UnRegister
> >>> >> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
> >>> >> >> >>> >> construction
> >>> >> >> >>> >>      BUG: Use const pointer in Set method for constant
> >>> >> >> >>> >> ReferenceImage
> >>> >> >> >>> >> ivar
> >>> >> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
> >>> >> >> >>> >> Threshold
> >>> >> >> >>> >> range
> >>> >> >> >>> >>
> >>> >> >> >>> >> Davis Vigneault (3):
> >>> >> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling
> with
> >>> >> >> >>> >> c++11
> >>> >> >> >>> >>      DOC: Expanded Canny Edge Detection Example
> >>> >> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with
> >>> >> >> >>> >> c++11
> >>> >> >> >>> >>
> >>> >> >> >>> >> Eugene Prilepin (1):
> >>> >> >> >>> >>      BUG: Fix a template name formation in python
> wrappings
> >>> >> >> >>> >>
> >>> >> >> >>> >> Hans Johnson (5):
> >>> >> >> >>> >>      STYLE: Minor code style issues for MGHIO
> >>> >> >> >>> >>      COMP: Update to version for WikiExamples
> >>> >> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
> >>> >> >> >>> >>      ENH: Update MGHIO to be shared lib
> >>> >> >> >>> >>      BUG: Fix MGHIO to fix write failures
> >>> >> >> >>> >>
> >>> >> >> >>> >> Hyun Jae Kang (4):
> >>> >> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >>> >> >> >>> >>      BUG: Remove std::cout calls from class
> >>> >> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines
> in
> >>> >> >> >>> >> VTK
> >>> >> >> >>> >> file
> >>> >> >> >>> >> header.
> >>> >> >> >>> >>      BUG: Fixed older XCode linking error
> >>> >> >> >>> >>
> >>> >> >> >>> >> Matthew McCormick (8):
> >>> >> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >>> >> >> >>> >>      COMP: Remove unused argument in
> >>> >> >> >>> >> ConditionVariableNoThreads.
> >>> >> >> >>> >>      DOC: Correct spelling of Continuous.
> >>> >> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument
> >>> >> >> >>> >> type.
> >>> >> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
> >>> >> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
> >>> >> >> >>> >> sys.path
> >>> >> >> >>> >>      COMP: Set CMP0054 to new.
> >>> >> >> >>> >>
> >>> >> >> >>> >> Michka Popoff (1):
> >>> >> >> >>> >>      COMP: Disable incompatible modules when using Python
> 3
> >>> >> >> >>> >> wrapping
> >>> >> >> >>> >>
> >>> >> >> >>> >> Mikhail Isakov (1):
> >>> >> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no
> >>> >> >> >>> >> baseline
> >>> >> >> >>> >> image
> >>> >> >> >>> >> _______________________________________________
> >>> >> >> >>> >> Powered by www.kitware.com
> >>> >> >> >>> >>
> >>> >> >> >>> >> Visit other Kitware open-source projects at
> >>> >> >> >>> >> http://www.kitware.com/opensource/opensource.html
> >>> >> >> >>> >>
> >>> >> >> >>> >> Kitware offers ITK Training Courses, for more information
> >>> >> >> >>> >> visit:
> >>> >> >> >>> >> http://kitware.com/products/protraining.php
> >>> >> >> >>> >>
> >>> >> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
> >>> >> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
> >>> >> >> >>> >>
> >>> >> >> >>> >> Follow this link to subscribe/unsubscribe:
> >>> >> >> >>> >>
> >>> >> >> >>> >>
> http://public.kitware.com/mailman/listinfo/insight-developers
> >>> >> >> >>> >
> >>> >> >> >>> _______________________________________________
> >>> >> >> >>> Powered by www.kitware.com
> >>> >> >> >>>
> >>> >> >> >>> Visit other Kitware open-source projects at
> >>> >> >> >>> http://www.kitware.com/opensource/opensource.html
> >>> >> >> >>>
> >>> >> >> >>> Kitware offers ITK Training Courses, for more information
> >>> >> >> >>> visit:
> >>> >> >> >>> http://kitware.com/products/protraining.php
> >>> >> >> >>>
> >>> >> >> >>> Please keep messages on-topic and check the ITK FAQ at:
> >>> >> >> >>> http://www.itk.org/Wiki/ITK_FAQ
> >>> >> >> >>>
> >>> >> >> >>> Follow this link to subscribe/unsubscribe:
> >>> >> >> >>>
> http://public.kitware.com/mailman/listinfo/insight-developers
> >>> >> >> >>
> >>> >> >> >>
> >>> >> >> >> _______________________________________________
> >>> >> >> >> Powered by www.kitware.com
> >>> >> >> >>
> >>> >> >> >> Visit other Kitware open-source projects at
> >>> >> >> >> http://www.kitware.com/opensource/opensource.html
> >>> >> >> >>
> >>> >> >> >> Kitware offers ITK Training Courses, for more information
> visit:
> >>> >> >> >> http://kitware.com/products/protraining.php
> >>> >> >> >>
> >>> >> >> >> Please keep messages on-topic and check the ITK FAQ at:
> >>> >> >> >> http://www.itk.org/Wiki/ITK_FAQ
> >>> >> >> >>
> >>> >> >> >> Follow this link to subscribe/unsubscribe:
> >>> >> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >>> >> >> >>
> >>> >> >> >> _______________________________________________
> >>> >> >> >> Community mailing list
> >>> >> >> >> Community at itk.org
> >>> >> >> >> http://public.kitware.com/mailman/listinfo/community
> >>> >> >> >>
> >>> >> >> >
>
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From luc.hermitte at c-s.fr  Thu Nov 12 12:17:59 2015
From: luc.hermitte at c-s.fr (Luc Hermitte)
Date: Thu, 12 Nov 2015 18:17:59 +0100
Subject: [ITK-dev] About the last optimization on VariableLengthVector
Message-ID: <5644C9C7.6030603@c-s.fr>

Hello,

I've pushed a patch that illustrate a way to have better performances
with VariableLengthVectors (VLV).
    http://review.source.kitware.com/#/c/20389/
I suspect, this patch will need some discussions.

You'll find a descriptions of where I wish to go, of the problems
encountered on the way, and of possible solutions.

The biggest issue is how to have thread-safe cached variables in
functions that were pure functions until now, and still keep the code as
simple as possible, and minimize the number of modifications required to
improve the code base (regarding performances on VLV)


Regards
--Luc Hermitte



This is the final step of the performances enhancements to be made on
VLV in order to have performances on par with monoband itk::Image<>.

This patch won't pass tests. This is known.
I still have to reorganize the new code and to document it.

It's meant to illustrate different possibilities and issues to be
solved. Here is a short summary. Let discuss on the mailing list.

The *purpose* of this patch (and the previous ones as well) is to
eliminate allocations made of each pixel.

This will permit (on a Linear Interpolation test case to reduce the
computation time, on a VectorImage, from 85s to 27s -- it was around 2
minutes before the first patches, and on the same image read as an
itk::Image it takes ~15-17s)

First problem: PixelType Evalutate(...);
Currently, when we apply an ImageFunction, we call Evaluate() function
which requires the creation of a new VLV. Indeed this function return a
new pixel value by value.
The only way to get rid of the variable creation is to return the new
value as an output reference parameter.

This means all classes that inherit from ImageFunction will need to
change the signature of their EvaluateXxxx() functions. And that all
client classes must take this into account. In other words, many
modifications will be required if we want to have better performances on
VLV.

Note however, it's quite simple to migrate gradually the source code to
the new interface : we can have all client code explicitly use the new
(and badly named) EvaluateNoCopy(), which in turn call the old
Evaluate() -- or the other way around (which has a drawback regarding
cached variables).

Second Problem: Temporary pixel values
Some computations will produce new pixel values. For instance
  p = p0 + (p1 - p0) * d;
produces 3 new pixels values.
This has already been taken care of in the previous patches thanks to
Expression Templates.

Third Problem: Local Variables
3.1- Auxiliary variables
Some algorithms (e.g. BSplines interpolations) require dynamic data
structures like matrices. This implies allocation at each iteration.
This particular problem isn't addressed in this patch. The solution to
3.2 will help to provide an solution.

3.2- Factorized computations
Sometimes, a complex computation will take advantage of code
factorisation (easier to maintain, and better performances). e.g.

   Pixel p4 = p0 + (p1 - p0) * d0
   Pixel p5 = p2 + (p3 - p2) * d1
   output = p4 + (p5 - p4) * d2

This implies new pixel values, hence dynamic allocations.

In c++11, we could (almost) have written
   auto p4 = p0 + (p1 - p0) * d0

Except that p4 is an expression template. Its type is quite complex to
express in plain C++98/03. But the problem will be that the current
implementation of expression templates uses references. Here p4 will be
made of dangling references, the code would be bugged.
Workarounds would be possible in C++11 as it will permit us to
distinguish lvalue references from rvalue references in order to copy
the latter, and keep references to the former.
We are not in C++11 yet. Moreover, this would not factorize the
computations.

We need a C++98 solution.
The only way I see is to rely on cached variables.
This means that the ImageFunctions are no longer [[pure]] functions :
they'll mutate some variables that we want to allocate once per
ImageFunction and ... per thread.
Indeed the ImageFunctions shall be reentrant.

I was first hoping to use thread_local variables. Alas they cannot be
non-static attributes. This is a problem: if I'm not wrong, a same
ImageFunction could be used multiple times in a same processing chain.

We still have a simple solution, but it requires a second modification
to Evaluate() signature: we need to pass the current ThreadId.

The new drawback: code migration requires more work. We can not write
Evaluate() in terms of EvaluateNoCopy() as the latter requires the
threadId that the former doesn't know. This is the reason why I expect
the tests to fail.
Instead we need to convert all client code (like the WarpImageFilter)
and have the default implementation of EvaluateNoCopy() to call the
already written and not yet converted Evalutate().

Fourth Problem: heterogeneous data types (i.e. castings)
The input image type, the output image type, and the internal pixel type
may all be different. That's why the code contain so many static_casts.

Alas a static_cast<> on pixels will induce the creation of new pixel values.
This is contrary to the purpose of this patch.
Copy constructors and assignment operators already support on-the-fly
implicit static_casting.
We still need to be able to require casting only when it's required.
That's where the new function CastInto(), MoveInto() and As() come into
rescue.

Alas, all ImageFunction codes will need to be converted to use these
functions.


From david.mo.burns at gmail.com  Thu Nov 12 20:38:57 2015
From: david.mo.burns at gmail.com (David Burns)
Date: Thu, 12 Nov 2015 20:38:57 -0500
Subject: [ITK-dev] 2D/3D registration in v4
Message-ID: <56453F31.5010206@gmail.com>

Dear Insight,

I am having the following trouble attempting 2D/3D registration of 
xray/CT with ITK v4 registration framework.

The basics: The moving image is a 3D volume, and the fixed image is a 2D 
projection. An interpolator calculates a synthetic cone-beam projection 
for the moving image (volume) and compares to the fixed 2D image.

The v4 registration framework doesn't allow me to use a 2D fixed and 3D 
moving image -> won't compile. So I need to setup the fixed image as 3D, 
even though it is 2D data. I can compile, but I get the following error 
at run time


ExceptionObject caught !

itk::ExceptionObject (0x20cfac0)
Location: "void itk::RecursiveSeparableImageFilter<TInputImage, 
TOutputImage>::BeforeThreadedGenerateData() [with TInputImage = 
itk::Image<float, 3u>; TOutputImage = itk::Image<float, 3u>]"
File: /usr/local/include/ITK-4.8/itkRecursiveSeparableImageFilter.hxx
Line: 245
Description: itk::ERROR: RecursiveGaussianImageFilter(0x2089fb0): The 
number of pixels along direction 2 is less than 4. This filter requires 
a minimum of four pixels along the dimension to be processed.

It seems this behavior does not occur in the v3 registration framework 
and 2D/3D registrations were possible, however, I want to take advantage 
of the threading features in v4. How would you suggest I proceed?


Thanks
David Burns







From david.mo.burns at gmail.com  Thu Nov 12 21:51:41 2015
From: david.mo.burns at gmail.com (David Burns)
Date: Thu, 12 Nov 2015 21:51:41 -0500
Subject: [ITK-dev] [ITK]  2D/3D registration in v4
In-Reply-To: <CAKKNfuJmQ65G_D4ishVM6JoMmWivR7GB1DCpHYKsP_3QhQEukA@mail.gmail.com>
References: <56453F31.5010206@gmail.com>
 <CAKKNfuJmQ65G_D4ishVM6JoMmWivR7GB1DCpHYKsP_3QhQEukA@mail.gmail.com>
Message-ID: <5645503D.9030808@gmail.com>

I think this issue relates to the way the metrics compute gradients. It 
can be reproduced using

Examples/RegistrationITKv4/ImageRegistration1.cxx
and
Examples/RegistrationITKv3/ImageRegistration1.cxx

by setting Dimensions to 3, and using 2D images as inputs.

I found using: metric->ComputeGradientOff()
will allow the registration to proceed for ITKv3 using the 
MeanSquaresImageToImageMetric, but there is no such function for the v4 
version.
Using a metric that does not require gradients (eg Mattes) will allow 
the registration to proceed in both v3 and v4.

I humbly suggest the registration framework and metrics should be able 
to handle this situation. Also of note to those interested, the v3 
registration on my system goes about twice as fast per iteration.

What are your thoughts?

David

On 11/12/2015 08:41 PM, Matias Montroull wrote:
>
> David, would you be able to share the code you wrote?
>
> On Nov 12, 2015 10:39 PM, "David Burns" <david.mo.burns at gmail.com 
> <mailto:david.mo.burns at gmail.com>> wrote:
>
>     Dear Insight,
>
>     I am having the following trouble attempting 2D/3D registration of
>     xray/CT with ITK v4 registration framework.
>
>     The basics: The moving image is a 3D volume, and the fixed image
>     is a 2D projection. An interpolator calculates a synthetic
>     cone-beam projection for the moving image (volume) and compares to
>     the fixed 2D image.
>
>     The v4 registration framework doesn't allow me to use a 2D fixed
>     and 3D moving image -> won't compile. So I need to setup the fixed
>     image as 3D, even though it is 2D data. I can compile, but I get
>     the following error at run time
>
>
>     ExceptionObject caught !
>
>     itk::ExceptionObject (0x20cfac0)
>     Location: "void itk::RecursiveSeparableImageFilter<TInputImage,
>     TOutputImage>::BeforeThreadedGenerateData() [with TInputImage =
>     itk::Image<float, 3u>; TOutputImage = itk::Image<float, 3u>]"
>     File: /usr/local/include/ITK-4.8/itkRecursiveSeparableImageFilter.hxx
>     Line: 245
>     Description: itk::ERROR: RecursiveGaussianImageFilter(0x2089fb0):
>     The number of pixels along direction 2 is less than 4. This filter
>     requires a minimum of four pixels along the dimension to be processed.
>
>     It seems this behavior does not occur in the v3 registration
>     framework and 2D/3D registrations were possible, however, I want
>     to take advantage of the threading features in v4. How would you
>     suggest I proceed?
>
>
>     Thanks
>     David Burns
>
>
>
>
>
>
>     _______________________________________________
>     Powered by www.kitware.com <http://www.kitware.com>
>
>     Visit other Kitware open-source projects at
>     http://www.kitware.com/opensource/opensource.html
>
>     Kitware offers ITK Training Courses, for more information visit:
>     http://kitware.com/products/protraining.php
>
>     Please keep messages on-topic and check the ITK FAQ at:
>     http://www.itk.org/Wiki/ITK_FAQ
>
>     Follow this link to subscribe/unsubscribe:
>     http://public.kitware.com/mailman/listinfo/insight-developers
>     _______________________________________________
>     Community mailing list
>     Community at itk.org <mailto:Community at itk.org>
>     http://public.kitware.com/mailman/listinfo/community
>

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From matt.mccormick at kitware.com  Fri Nov 13 18:04:48 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 13 Nov 2015 18:04:48 -0500
Subject: [ITK-dev] [ITK] About the last optimization on
	VariableLengthVector
In-Reply-To: <5644C9C7.6030603@c-s.fr>
References: <5644C9C7.6030603@c-s.fr>
Message-ID: <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>

Hello Luc,

Thanks for all your awesome work on increasing the performance of
itk::VariableLengthVector's and ITK.  For those that have not kept up
on Gerrit activity, Luc has increased performance of resampling
VariableLengthVector's, added expression template support, and
populated a new itk::mpl:: namespace with meta-programming classes!


> The *purpose* of this patch (and the previous ones as well) is to
> eliminate allocations made of each pixel.
>
> This will permit (on a Linear Interpolation test case to reduce the
> computation time, on a VectorImage, from 85s to 27s -- it was around 2
> minutes before the first patches, and on the same image read as an
> itk::Image it takes ~15-17s)

Excellent!


> First problem: PixelType Evalutate(...);
> Currently, when we apply an ImageFunction, we call Evaluate() function
> which requires the creation of a new VLV. Indeed this function return a
> new pixel value by value.
> The only way to get rid of the variable creation is to return the new
> value as an output reference parameter.
>
> This means all classes that inherit from ImageFunction will need to
> change the signature of their EvaluateXxxx() functions. And that all
> client classes must take this into account. In other words, many
> modifications will be required if we want to have better performances on
> VLV.
>
> Note however, it's quite simple to migrate gradually the source code to
> the new interface : we can have all client code explicitly use the new
> (and badly named) EvaluateNoCopy(), which in turn call the old
> Evaluate() -- or the other way around (which has a drawback regarding
> cached variables).

This sounds good.  EvaluateNoCopy() seems like a reasonable name to me.


> Second Problem: Temporary pixel values
> Some computations will produce new pixel values. For instance
>   p = p0 + (p1 - p0) * d;
> produces 3 new pixels values.
> This has already been taken care of in the previous patches thanks to
> Expression Templates.

Nice :-)


> Third Problem: Local Variables
> 3.1- Auxiliary variables
> Some algorithms (e.g. BSplines interpolations) require dynamic data
> structures like matrices. This implies allocation at each iteration.
> This particular problem isn't addressed in this patch. The solution to
> 3.2 will help to provide an solution.
>
> 3.2- Factorized computations
> Sometimes, a complex computation will take advantage of code
> factorisation (easier to maintain, and better performances). e.g.
>
>    Pixel p4 = p0 + (p1 - p0) * d0
>    Pixel p5 = p2 + (p3 - p2) * d1
>    output = p4 + (p5 - p4) * d2
>
> This implies new pixel values, hence dynamic allocations.
>
> In c++11, we could (almost) have written
>    auto p4 = p0 + (p1 - p0) * d0
>
> Except that p4 is an expression template. Its type is quite complex to
> express in plain C++98/03. But the problem will be that the current
> implementation of expression templates uses references. Here p4 will be
> made of dangling references, the code would be bugged.
> Workarounds would be possible in C++11 as it will permit us to
> distinguish lvalue references from rvalue references in order to copy
> the latter, and keep references to the former.
> We are not in C++11 yet. Moreover, this would not factorize the
> computations.
>
> We need a C++98 solution.
> The only way I see is to rely on cached variables.
> This means that the ImageFunctions are no longer [[pure]] functions :
> they'll mutate some variables that we want to allocate once per
> ImageFunction and ... per thread.
> Indeed the ImageFunctions shall be reentrant.
>
> I was first hoping to use thread_local variables. Alas they cannot be
> non-static attributes. This is a problem: if I'm not wrong, a same
> ImageFunction could be used multiple times in a same processing chain.
>
> We still have a simple solution, but it requires a second modification
> to Evaluate() signature: we need to pass the current ThreadId.
>
> The new drawback: code migration requires more work. We can not write
> Evaluate() in terms of EvaluateNoCopy() as the latter requires the
> threadId that the former doesn't know. This is the reason why I expect
> the tests to fail.
> Instead we need to convert all client code (like the WarpImageFilter)
> and have the default implementation of EvaluateNoCopy() to call the
> already written and not yet converted Evalutate().

This would be messy, and it would not work very well since the
ImageFunction's are not involved in orchestration of the threading.
Instead, it would be better to make the necessary auxiliary variables
private variables.  Parallel code that uses ImageFunction's should
create one ImageFunction instance per thread.


> Fourth Problem: heterogeneous data types (i.e. castings)
> The input image type, the output image type, and the internal pixel type
> may all be different. That's why the code contain so many static_casts.
>
> Alas a static_cast<> on pixels will induce the creation of new pixel values.
> This is contrary to the purpose of this patch.
> Copy constructors and assignment operators already support on-the-fly
> implicit static_casting.
> We still need to be able to require casting only when it's required.
> That's where the new function CastInto(), MoveInto() and As() come into
> rescue.

So compiler's are not intelligent to make a static_cast<> a no-op when
the types are the same?


Thanks,
Matt

From matt.mccormick at kitware.com  Fri Nov 13 18:11:01 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 13 Nov 2015 18:11:01 -0500
Subject: [ITK-dev] [ITK] 2D/3D registration in v4
In-Reply-To: <5645503D.9030808@gmail.com>
References: <56453F31.5010206@gmail.com>
 <CAKKNfuJmQ65G_D4ishVM6JoMmWivR7GB1DCpHYKsP_3QhQEukA@mail.gmail.com>
 <5645503D.9030808@gmail.com>
Message-ID: <CALzTN-ShQU=80WwHOc+3tE92G8VckEhwqTLXyxnSC=v_cj3npw@mail.gmail.com>

Hi David,

On Thu, Nov 12, 2015 at 9:51 PM, David Burns <david.mo.burns at gmail.com> wrote:
> I think this issue relates to the way the metrics compute gradients. It can
> be reproduced using
>
> Examples/RegistrationITKv4/ImageRegistration1.cxx
> and
> Examples/RegistrationITKv3/ImageRegistration1.cxx
>
> by setting Dimensions to 3, and using 2D images as inputs.
>
> I found using: metric->ComputeGradientOff()
> will allow the registration to proceed for ITKv3 using the
> MeanSquaresImageToImageMetric, but there is no such function for the v4
> version.
> Using a metric that does not require gradients (eg Mattes) will allow the
> registration to proceed in both v3 and v4.
>
> I humbly suggest the registration framework and metrics should be able to
> handle this situation. Also of note to those interested, the v3 registration
> on my system goes about twice as fast per iteration.

Patches would be welcome to improve the situation! Details on patch
submission are here:

  http://www.itk.org/Wiki/ITK/Git/Develop


In terms of performance, we are creating a system of benchmarks so
that we can quantify performance to make improvements and identify
regressions.  The work is being added to this repository:

  https://github.com/InsightSoftwareConsortium/ITKPerformanceBenchmarks

The basic infrastructure will be in place in a few weeks time, after
which you create a pull request for your use case. This will help make
it possible to improve performance on your use case.

Thanks,
Matt

From matt.mccormick at kitware.com  Fri Nov 13 18:15:16 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 13 Nov 2015 18:15:16 -0500
Subject: [ITK-dev] Precompiled header support
Message-ID: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>

Hi folks,

In the hope of reducing ITK build time, I started work on adding
pre-compiled header support to ITK here:

  http://review.source.kitware.com/#/c/20349/

Unfortunately, after testing the build times with both GCC and Clang,
there was no notable benefit to build times.  I'm abandoning the
patch, and hopefully the lesson is beneficial for any with false-hopes
of the advantages to pre-compiled headers!

Thanks,
Matt

From matt.mccormick at kitware.com  Fri Nov 13 18:46:54 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 13 Nov 2015 18:46:54 -0500
Subject: [ITK-dev] BUILD_EXAMPLES default to OFF
Message-ID: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>

Hi folks,

In order to improve the first impressions of new users of the toolkit,
I would like change the default BUILD_EXAMPLES build configuration to
OFF.  This will decrease the default build time, and it the reduced
number of targets will help with Visual Studio builds.

When developing, it is nice to have BUILD_EXAMPLES OFF too, at least
at first, to decrease build time.

We would have to ensure that all dashboard builds turn BUILD_EXAMPLES ON.

Thoughts?

Thanks,
Matt

From bill.lorensen at gmail.com  Fri Nov 13 18:49:03 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Fri, 13 Nov 2015 18:49:03 -0500
Subject: [ITK-dev] BUILD_EXAMPLES default to OFF
In-Reply-To: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
References: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
Message-ID: <CADZJ4hOh8Ddq0z-Mcgw_fieO9cd3wB3e=h0wVCdt8XS5dtCf=Q@mail.gmail.com>

+1
On Nov 13, 2015 6:46 PM, "Matt McCormick" <matt.mccormick at kitware.com>
wrote:

> Hi folks,
>
> In order to improve the first impressions of new users of the toolkit,
> I would like change the default BUILD_EXAMPLES build configuration to
> OFF.  This will decrease the default build time, and it the reduced
> number of targets will help with Visual Studio builds.
>
> When developing, it is nice to have BUILD_EXAMPLES OFF too, at least
> at first, to decrease build time.
>
> We would have to ensure that all dashboard builds turn BUILD_EXAMPLES ON.
>
> Thoughts?
>
> Thanks,
> Matt
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
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From hans-johnson at uiowa.edu  Fri Nov 13 19:02:57 2015
From: hans-johnson at uiowa.edu (Johnson, Hans J)
Date: Sat, 14 Nov 2015 00:02:57 +0000
Subject: [ITK-dev] BUILD_EXAMPLES default to OFF
In-Reply-To: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
References: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
Message-ID: <D8AE99EF-8BF1-4BEA-B743-DE9497F31A49@uiowa.edu>

+1 too.





On 11/13/15, 5:46 PM, "Insight-developers on behalf of Matt McCormick" <insight-developers-bounces at itk.org on behalf of matt.mccormick at kitware.com> wrote:

>Hi folks,
>
>In order to improve the first impressions of new users of the toolkit,
>I would like change the default BUILD_EXAMPLES build configuration to
>OFF.  This will decrease the default build time, and it the reduced
>number of targets will help with Visual Studio builds.
>
>When developing, it is nice to have BUILD_EXAMPLES OFF too, at least
>at first, to decrease build time.
>
>We would have to ensure that all dashboard builds turn BUILD_EXAMPLES ON.
>
>Thoughts?
>
>Thanks,
>Matt
>_______________________________________________
>Powered by www.kitware.com
>
>Visit other Kitware open-source projects at
>http://www.kitware.com/opensource/opensource.html
>
>Kitware offers ITK Training Courses, for more information visit:
>http://kitware.com/products/protraining.php
>
>Please keep messages on-topic and check the ITK FAQ at:
>http://www.itk.org/Wiki/ITK_FAQ
>
>Follow this link to subscribe/unsubscribe:
>http://public.kitware.com/mailman/listinfo/insight-developers


________________________________
Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential and may be legally privileged.  If you are not the intended recipient, you are hereby notified that any retention, dissemination, distribution, or copying of this communication is strictly prohibited.  Please reply to the sender that you have received the message in error, then delete it.  Thank you.
________________________________

From david.mo.burns at gmail.com  Fri Nov 13 21:29:09 2015
From: david.mo.burns at gmail.com (David Burns)
Date: Fri, 13 Nov 2015 21:29:09 -0500
Subject: [ITK-dev] [ITK] 2D/3D registration in v4
In-Reply-To: <CALzTN-ShQU=80WwHOc+3tE92G8VckEhwqTLXyxnSC=v_cj3npw@mail.gmail.com>
References: <56453F31.5010206@gmail.com>
 <CAKKNfuJmQ65G_D4ishVM6JoMmWivR7GB1DCpHYKsP_3QhQEukA@mail.gmail.com>
 <5645503D.9030808@gmail.com>
 <CALzTN-ShQU=80WwHOc+3tE92G8VckEhwqTLXyxnSC=v_cj3npw@mail.gmail.com>
Message-ID: <56469C75.3030102@gmail.com>

Thanks Matt for your response.

For now I will proceed using metrics that don't require gradients.

At some point, it would be nice for the framework to handle 2D images in 
the 3D coordinate system.

Should we log this issue as a bug?

David

On 11/13/2015 06:11 PM, Matt McCormick wrote:
> Hi David,
>
> On Thu, Nov 12, 2015 at 9:51 PM, David Burns <david.mo.burns at gmail.com> wrote:
>> I think this issue relates to the way the metrics compute gradients. It can
>> be reproduced using
>>
>> Examples/RegistrationITKv4/ImageRegistration1.cxx
>> and
>> Examples/RegistrationITKv3/ImageRegistration1.cxx
>>
>> by setting Dimensions to 3, and using 2D images as inputs.
>>
>> I found using: metric->ComputeGradientOff()
>> will allow the registration to proceed for ITKv3 using the
>> MeanSquaresImageToImageMetric, but there is no such function for the v4
>> version.
>> Using a metric that does not require gradients (eg Mattes) will allow the
>> registration to proceed in both v3 and v4.
>>
>> I humbly suggest the registration framework and metrics should be able to
>> handle this situation. Also of note to those interested, the v3 registration
>> on my system goes about twice as fast per iteration.
> Patches would be welcome to improve the situation! Details on patch
> submission are here:
>
>    http://www.itk.org/Wiki/ITK/Git/Develop
>
>
> In terms of performance, we are creating a system of benchmarks so
> that we can quantify performance to make improvements and identify
> regressions.  The work is being added to this repository:
>
>    https://github.com/InsightSoftwareConsortium/ITKPerformanceBenchmarks
>
> The basic infrastructure will be in place in a few weeks time, after
> which you create a pull request for your use case. This will help make
> it possible to improve performance on your use case.
>
> Thanks,
> Matt


From luc.hermitte at c-s.fr  Mon Nov 16 08:55:36 2015
From: luc.hermitte at c-s.fr (Luc Hermitte)
Date: Mon, 16 Nov 2015 14:55:36 +0100
Subject: [ITK-dev] [ITK] About the last optimization on
 VariableLengthVector
In-Reply-To: <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>
References: <5644C9C7.6030603@c-s.fr>
 <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>
Message-ID: <5649E058.5010905@c-s.fr>

Hi,

Le 14/11/2015 00:04, Matt McCormick a ?crit :
> Thanks for all your awesome work on increasing the performance of
> itk::VariableLengthVector's and ITK.

Thank you.

> [...snip...]

>> Third Problem: Local Variables
>> 3.1- Auxiliary variables
>> Some algorithms (e.g. BSplines interpolations) require dynamic data
>> structures like matrices. This implies allocation at each iteration.
>> This particular problem isn't addressed in this patch. The solution to
>> 3.2 will help to provide an solution.
>>
>> 3.2- Factorized computations
>> [...]
>>
>> We need a C++98 solution.
>> The only way I see is to rely on cached variables.
>> This means that the ImageFunctions are no longer [[pure]] functions :
>> they'll mutate some variables that we want to allocate once per
>> ImageFunction and ... per thread.
>> Indeed the ImageFunctions shall be reentrant.
>>
>> I was first hoping to use thread_local variables. Alas they cannot be
>> non-static attributes. This is a problem: if I'm not wrong, a same
>> ImageFunction could be used multiple times in a same processing chain.
>>
>> We still have a simple solution, but it requires a second modification
>> to Evaluate() signature: we need to pass the current ThreadId.
>>
>> The new drawback: code migration requires more work. We can not write
>> Evaluate() in terms of EvaluateNoCopy() as the latter requires the
>> threadId that the former doesn't know. This is the reason why I expect
>> the tests to fail.
>> Instead we need to convert all client code (like the WarpImageFilter)
>> and have the default implementation of EvaluateNoCopy() to call the
>> already written and not yet converted Evalutate().
> 
> This would be messy, and it would not work very well since the
> ImageFunction's are not involved in orchestration of the threading.
> Instead, it would be better to make the necessary auxiliary variables
> private variables.  Parallel code that uses ImageFunction's should
> create one ImageFunction instance per thread.

I'm afraid that with this choice, code that currently works well in
parallel won't work anymore. End users will need to rewrite all uses of
image functions in order to use them in MT code. And I guess we will
also need to rewrite several test cases.

Unless we duplicate the Evaluate() code : i.e. unless we keep the
current version, and we add the new and optimized rewrite (for VLV in
most cases, or for every kind of variables in some other cases (e.g.
BSpline interpolation where caching matrix allocations helps reduce
computation time))
Duplicating image function algorithms doesn't seem to be a good choice
either.


>> Fourth Problem: heterogeneous data types (i.e. castings)
>> The input image type, the output image type, and the internal pixel type
>> may all be different. That's why the code contain so many static_casts.
>>
>> Alas a static_cast<> on pixels will induce the creation of new pixel values.
>> This is contrary to the purpose of this patch.
>> Copy constructors and assignment operators already support on-the-fly
>> implicit static_casting.
>> We still need to be able to require casting only when it's required.
>> That's where the new function CastInto(), MoveInto() and As() come into
>> rescue.
> 
> So compiler's are not intelligent to make a static_cast<> a no-op when
> the types are the same?

Unfortunately, it doesn't seem so. Check
http://stackoverflow.com/questions/19106826/can-static-cast-to-same-type-introduce-runtime-overhead

Moreover, in the case of converting VLV<double> to VLV<int>, with a
static_cast, we'll force the creation of a new variable which is what I
striving to avoid.

Hence the new helper functions that'll use the converting assignment
operators in case of VLV, or static_cast in all other cases.

Regards,
-- 
Luc Hermitte

From matt.mccormick at kitware.com  Mon Nov 16 10:13:48 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 16 Nov 2015 10:13:48 -0500
Subject: [ITK-dev] [ITK] 2D/3D registration in v4
In-Reply-To: <56469C75.3030102@gmail.com>
References: <56453F31.5010206@gmail.com>
 <CAKKNfuJmQ65G_D4ishVM6JoMmWivR7GB1DCpHYKsP_3QhQEukA@mail.gmail.com>
 <5645503D.9030808@gmail.com>
 <CALzTN-ShQU=80WwHOc+3tE92G8VckEhwqTLXyxnSC=v_cj3npw@mail.gmail.com>
 <56469C75.3030102@gmail.com>
Message-ID: <CALzTN-Qz7C9ki4B_a1-iJG-dBdO92_kN2p=e9XuC=a341R4+Mg@mail.gmail.com>

On Fri, Nov 13, 2015 at 9:29 PM, David Burns <david.mo.burns at gmail.com> wrote:
> Thanks Matt for your response.
>
> For now I will proceed using metrics that don't require gradients.
>
> At some point, it would be nice for the framework to handle 2D images in the
> 3D coordinate system.
>
> Should we log this issue as a bug?

Yes, please log an issue here:

  https://issues.itk.org


Thanks,
Matt

From dzenanz at gmail.com  Mon Nov 16 10:27:27 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 16 Nov 2015 10:27:27 -0500
Subject: [ITK-dev] BUILD_EXAMPLES default to OFF
In-Reply-To: <D8AE99EF-8BF1-4BEA-B743-DE9497F31A49@uiowa.edu>
References: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
 <D8AE99EF-8BF1-4BEA-B743-DE9497F31A49@uiowa.edu>
Message-ID: <CAPf2UMTf35WqAAA7o1eAbL-prwgXipg4eg4p_W8_49r0bq_TCA@mail.gmail.com>

+1

On Fri, Nov 13, 2015 at 7:02 PM, Johnson, Hans J <hans-johnson at uiowa.edu>
wrote:

> +1 too.
>
>
>
>
>
> On 11/13/15, 5:46 PM, "Insight-developers on behalf of Matt McCormick" <
> insight-developers-bounces at itk.org on behalf of matt.mccormick at kitware.com>
> wrote:
>
> >Hi folks,
> >
> >In order to improve the first impressions of new users of the toolkit,
> >I would like change the default BUILD_EXAMPLES build configuration to
> >OFF.  This will decrease the default build time, and it the reduced
> >number of targets will help with Visual Studio builds.
> >
> >When developing, it is nice to have BUILD_EXAMPLES OFF too, at least
> >at first, to decrease build time.
> >
> >We would have to ensure that all dashboard builds turn BUILD_EXAMPLES ON.
> >
> >Thoughts?
> >
> >Thanks,
> >Matt
> >_______________________________________________
> >Powered by www.kitware.com
> >
> >Visit other Kitware open-source projects at
> >http://www.kitware.com/opensource/opensource.html
> >
> >Kitware offers ITK Training Courses, for more information visit:
> >http://kitware.com/products/protraining.php
> >
> >Please keep messages on-topic and check the ITK FAQ at:
> >http://www.itk.org/Wiki/ITK_FAQ
> >
> >Follow this link to subscribe/unsubscribe:
> >http://public.kitware.com/mailman/listinfo/insight-developers
>
>
> ________________________________
> Notice: This UI Health Care e-mail (including attachments) is covered by
> the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is
> confidential and may be legally privileged.  If you are not the intended
> recipient, you are hereby notified that any retention, dissemination,
> distribution, or copying of this communication is strictly prohibited.
> Please reply to the sender that you have received the message in error,
> then delete it.  Thank you.
> ________________________________
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
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From matt.mccormick at kitware.com  Mon Nov 16 13:44:28 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 16 Nov 2015 13:44:28 -0500
Subject: [ITK-dev] [ITK] About the last optimization on
	VariableLengthVector
In-Reply-To: <5649E058.5010905@c-s.fr>
References: <5644C9C7.6030603@c-s.fr>
 <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>
 <5649E058.5010905@c-s.fr>
Message-ID: <CALzTN-R7y2QXKf=fJG6R9ON17hQJkVEJq+1nbmG=WGVMsEa6ig@mail.gmail.com>

On Mon, Nov 16, 2015 at 8:55 AM, Luc Hermitte <luc.hermitte at c-s.fr> wrote:

>>> Third Problem: Local Variables
>>> 3.1- Auxiliary variables
>>> Some algorithms (e.g. BSplines interpolations) require dynamic data
>>> structures like matrices. This implies allocation at each iteration.
>>> This particular problem isn't addressed in this patch. The solution to
>>> 3.2 will help to provide an solution.
>>>
>>> 3.2- Factorized computations
>>> [...]
>>>
>>> We need a C++98 solution.
>>> The only way I see is to rely on cached variables.
>>> This means that the ImageFunctions are no longer [[pure]] functions :
>>> they'll mutate some variables that we want to allocate once per
>>> ImageFunction and ... per thread.
>>> Indeed the ImageFunctions shall be reentrant.
>>>
>>> I was first hoping to use thread_local variables. Alas they cannot be
>>> non-static attributes. This is a problem: if I'm not wrong, a same
>>> ImageFunction could be used multiple times in a same processing chain.
>>>
>>> We still have a simple solution, but it requires a second modification
>>> to Evaluate() signature: we need to pass the current ThreadId.
>>>
>>> The new drawback: code migration requires more work. We can not write
>>> Evaluate() in terms of EvaluateNoCopy() as the latter requires the
>>> threadId that the former doesn't know. This is the reason why I expect
>>> the tests to fail.
>>> Instead we need to convert all client code (like the WarpImageFilter)
>>> and have the default implementation of EvaluateNoCopy() to call the
>>> already written and not yet converted Evalutate().
>>
>> This would be messy, and it would not work very well since the
>> ImageFunction's are not involved in orchestration of the threading.
>> Instead, it would be better to make the necessary auxiliary variables
>> private variables.  Parallel code that uses ImageFunction's should
>> create one ImageFunction instance per thread.
>
> I'm afraid that with this choice, code that currently works well in
> parallel won't work anymore. End users will need to rewrite all uses of
> image functions in order to use them in MT code. And I guess we will
> also need to rewrite several test cases.
>
> Unless we duplicate the Evaluate() code : i.e. unless we keep the
> current version, and we add the new and optimized rewrite (for VLV in
> most cases, or for every kind of variables in some other cases (e.g.
> BSpline interpolation where caching matrix allocations helps reduce
> computation time))
> Duplicating image function algorithms doesn't seem to be a good choice
> either.

Right. Yes, this will not be maintainable.

A feasible way forward seems to use a C++11 code path when available
that has enhanced performance (i.e., use auto with C++11).  The C++98
version will not be as fast, but it will work. ITK leans towards
readability, maintainability, and program-ability over performance in
cases like this.


>>> Fourth Problem: heterogeneous data types (i.e. castings)
>>> The input image type, the output image type, and the internal pixel type
>>> may all be different. That's why the code contain so many static_casts.
>>>
>>> Alas a static_cast<> on pixels will induce the creation of new pixel values.
>>> This is contrary to the purpose of this patch.
>>> Copy constructors and assignment operators already support on-the-fly
>>> implicit static_casting.
>>> We still need to be able to require casting only when it's required.
>>> That's where the new function CastInto(), MoveInto() and As() come into
>>> rescue.
>>
>> So compiler's are not intelligent to make a static_cast<> a no-op when
>> the types are the same?
>
> Unfortunately, it doesn't seem so. Check
> http://stackoverflow.com/questions/19106826/can-static-cast-to-same-type-introduce-runtime-overhead

Thanks for the link. That thread seems to indicate that POD types are
not an issue, and non-POD types may not be an issue outside of -O0.


> Moreover, in the case of converting VLV<double> to VLV<int>, with a
> static_cast, we'll force the creation of a new variable which is what I
> striving to avoid.
>
> Hence the new helper functions that'll use the converting assignment
> operators in case of VLV, or static_cast in all other cases.

Sounds reasonable.

What are the different definitions and uses for  CastInto(),
MoveInto(), and As()?


Thanks,
Matt

From matt.mccormick at kitware.com  Mon Nov 16 15:13:10 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 16 Nov 2015 15:13:10 -0500
Subject: [ITK-dev] BUILD_EXAMPLES default to OFF
In-Reply-To: <CAPf2UMTf35WqAAA7o1eAbL-prwgXipg4eg4p_W8_49r0bq_TCA@mail.gmail.com>
References: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
 <D8AE99EF-8BF1-4BEA-B743-DE9497F31A49@uiowa.edu>
 <CAPf2UMTf35WqAAA7o1eAbL-prwgXipg4eg4p_W8_49r0bq_TCA@mail.gmail.com>
Message-ID: <CALzTN-S-MsL5TX8YNw4Lt+vMwodhD7dKsY=AQrep+viHsnYKqw@mail.gmail.com>

Patch:

  http://review.source.kitware.com/#/c/20399/

On Mon, Nov 16, 2015 at 10:27 AM, D?enan Zuki? <dzenanz at gmail.com> wrote:
> +1
>
> On Fri, Nov 13, 2015 at 7:02 PM, Johnson, Hans J <hans-johnson at uiowa.edu>
> wrote:
>>
>> +1 too.
>>
>>
>>
>>
>>
>> On 11/13/15, 5:46 PM, "Insight-developers on behalf of Matt McCormick"
>> <insight-developers-bounces at itk.org on behalf of matt.mccormick at kitware.com>
>> wrote:
>>
>> >Hi folks,
>> >
>> >In order to improve the first impressions of new users of the toolkit,
>> >I would like change the default BUILD_EXAMPLES build configuration to
>> >OFF.  This will decrease the default build time, and it the reduced
>> >number of targets will help with Visual Studio builds.
>> >
>> >When developing, it is nice to have BUILD_EXAMPLES OFF too, at least
>> >at first, to decrease build time.
>> >
>> >We would have to ensure that all dashboard builds turn BUILD_EXAMPLES ON.
>> >
>> >Thoughts?
>> >
>> >Thanks,
>> >Matt
>> >_______________________________________________
>> >Powered by www.kitware.com
>> >
>> >Visit other Kitware open-source projects at
>> >http://www.kitware.com/opensource/opensource.html
>> >
>> >Kitware offers ITK Training Courses, for more information visit:
>> >http://kitware.com/products/protraining.php
>> >
>> >Please keep messages on-topic and check the ITK FAQ at:
>> >http://www.itk.org/Wiki/ITK_FAQ
>> >
>> >Follow this link to subscribe/unsubscribe:
>> >http://public.kitware.com/mailman/listinfo/insight-developers
>>
>>
>> ________________________________
>> Notice: This UI Health Care e-mail (including attachments) is covered by
>> the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is
>> confidential and may be legally privileged.  If you are not the intended
>> recipient, you are hereby notified that any retention, dissemination,
>> distribution, or copying of this communication is strictly prohibited.
>> Please reply to the sender that you have received the message in error, then
>> delete it.  Thank you.
>> ________________________________
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>
>

From matt.mccormick at kitware.com  Mon Nov 16 16:42:58 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 16 Nov 2015 16:42:58 -0500
Subject: [ITK-dev] ITK 4.9 release candidates approaching
Message-ID: <CALzTN-Rv4Oocu4xKY6KwGRjVZB8Y7N2-h9CPg4cqEDk0yzq+eA@mail.gmail.com>

Hi folks,

Per schedule, the first ITK 4.9 release candidate is scheduled to
start next week.  Please merge all reviewed and build robot verified
feature changes for 4.9 by the end of this week.

Thanks,
Matt

From luc.hermitte at c-s.fr  Tue Nov 17 03:46:44 2015
From: luc.hermitte at c-s.fr (Luc Hermitte)
Date: Tue, 17 Nov 2015 09:46:44 +0100
Subject: [ITK-dev] [ITK] About the last optimization on
 VariableLengthVector
In-Reply-To: <CALzTN-R7y2QXKf=fJG6R9ON17hQJkVEJq+1nbmG=WGVMsEa6ig@mail.gmail.com>
References: <5644C9C7.6030603@c-s.fr>
 <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>
 <5649E058.5010905@c-s.fr>
 <CALzTN-R7y2QXKf=fJG6R9ON17hQJkVEJq+1nbmG=WGVMsEa6ig@mail.gmail.com>
Message-ID: <564AE974.3030008@c-s.fr>

Le 16/11/2015 19:44, Matt McCormick a ?crit :
> On Mon, Nov 16, 2015 at 8:55 AM, Luc Hermitte <luc.hermitte at c-s.fr> wrote:
> 
>>>> Third Problem: Local Variables
>>>> 3.1- Auxiliary variables
>>>> Some algorithms (e.g. BSplines interpolations) require dynamic data
>>>> structures like matrices. This implies allocation at each iteration.
>>>> This particular problem isn't addressed in this patch. The solution to
>>>> 3.2 will help to provide an solution.
>>>>
>>>> 3.2- Factorized computations
>>>> [...]
>>>>
>>>> We need a C++98 solution.
>>>> The only way I see is to rely on cached variables.
>>>> This means that the ImageFunctions are no longer [[pure]] functions :
>>>> they'll mutate some variables that we want to allocate once per
>>>> ImageFunction and ... per thread.
>>>> Indeed the ImageFunctions shall be reentrant.
>>>>
>>>> I was first hoping to use thread_local variables. Alas they cannot be
>>>> non-static attributes. This is a problem: if I'm not wrong, a same
>>>> ImageFunction could be used multiple times in a same processing chain.
>>>>
>>>> We still have a simple solution, but it requires a second modification
>>>> to Evaluate() signature: we need to pass the current ThreadId.
>>>>
>>>> The new drawback: code migration requires more work. We can not write
>>>> Evaluate() in terms of EvaluateNoCopy() as the latter requires the
>>>> threadId that the former doesn't know. This is the reason why I expect
>>>> the tests to fail.
>>>> Instead we need to convert all client code (like the WarpImageFilter)
>>>> and have the default implementation of EvaluateNoCopy() to call the
>>>> already written and not yet converted Evalutate().
>>>
>>> This would be messy, and it would not work very well since the
>>> ImageFunction's are not involved in orchestration of the threading.
>>> Instead, it would be better to make the necessary auxiliary variables
>>> private variables.  Parallel code that uses ImageFunction's should
>>> create one ImageFunction instance per thread.
>>
>> I'm afraid that with this choice, code that currently works well in
>> parallel won't work anymore. End users will need to rewrite all uses of
>> image functions in order to use them in MT code. And I guess we will
>> also need to rewrite several test cases.
>>
>> Unless we duplicate the Evaluate() code : i.e. unless we keep the
>> current version, and we add the new and optimized rewrite (for VLV in
>> most cases, or for every kind of variables in some other cases (e.g.
>> BSpline interpolation where caching matrix allocations helps reduce
>> computation time))
>> Duplicating image function algorithms doesn't seem to be a good choice
>> either.
> 
> Right. Yes, this will not be maintainable.
> 
> A feasible way forward seems to use a C++11 code path when available
> that has enhanced performance (i.e., use auto with C++11).  The C++98
> version will not be as fast, but it will work. ITK leans towards
> readability, maintainability, and program-ability over performance in
> cases like this.

With this solution, we loose computation factorizations.

   auto p4 = p0 + (p1 - p0) * d0
   auto p5 = p2 + (p3 - p2) * d1
   output = p4 + (p5 - p4) * d2

p4 computations will be done twice on VLVs and std::valarrays.
// I suppose the dangling reference issue solved.

Using cached variables and introducing a new threadId parameter greatly
improve computation on VLV. But also on some other algorithms.

Readability and maintainability won't be that reduced.


>>>> Fourth Problem: heterogeneous data types (i.e. castings)
>>>> The input image type, the output image type, and the internal pixel type
>>>> may all be different. That's why the code contain so many static_casts.
>>>>
>>>> Alas a static_cast<> on pixels will induce the creation of new pixel values.
>>>> This is contrary to the purpose of this patch.
>>>> Copy constructors and assignment operators already support on-the-fly
>>>> implicit static_casting.
>>>> We still need to be able to require casting only when it's required.
>>>> That's where the new function CastInto(), MoveInto() and As() come into
>>>> rescue.
>>>
>>> So compiler's are not intelligent to make a static_cast<> a no-op when
>>> the types are the same?
>>
>> Unfortunately, it doesn't seem so. Check
>> http://stackoverflow.com/questions/19106826/can-static-cast-to-same-type-introduce-runtime-overhead
> 
> Thanks for the link. That thread seems to indicate that POD types are
> not an issue, and non-POD types may not be an issue outside of -O0.
> 
> 
>> Moreover, in the case of converting VLV<double> to VLV<int>, with a
>> static_cast, we'll force the creation of a new variable which is what I
>> striving to avoid.
>>
>> Hence the new helper functions that'll use the converting assignment
>> operators in case of VLV, or static_cast in all other cases.
> 
> Sounds reasonable.
> 
> What are the different definitions and uses for  CastInto(),
> MoveInto(), and As()?

MoveInto will try to swap() the content of two heavy variables like VLV
when both are of the same type and equivalent to lvalues. If they are
VLV but if their ValueTypes differ, the on-the-fly converting assignment
operator is used. Otherwise, static_cast is used.
The objective is not to use C++11 std::move as for the moment it isn't
implemented as a move-and-swap, but as a destructive move.

CastInto is to be used when swap cannot be used.
This is the case when one of the pixel is actually a proxy/pixel_view.
(i.e. when m_ManageMemory == false). Swapping pixels would alter the
input image, this is unacceptable. Hence, CastInto.

Both could be used independently of Expression Templates.

As<> produces an expression template (on VLV) that will eventually
execute a static_cast on each pixel component. On other types, it
becomes a simple static_cast.

--Luc

From skalexander at gmail.com  Tue Nov 17 09:40:59 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Tue, 17 Nov 2015 14:40:59 +0000
Subject: [ITK-dev] Precompiled header support
In-Reply-To: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>
References: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>
Message-ID: <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>

Hi Matt,

By any chance did you try this with microsofts build tools?

On Fri, 13 Nov 2015 at 18:15 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi folks,
>
> In the hope of reducing ITK build time, I started work on adding
> pre-compiled header support to ITK here:
>
>   http://review.source.kitware.com/#/c/20349/
>
> Unfortunately, after testing the build times with both GCC and Clang,
> there was no notable benefit to build times.  I'm abandoning the
> patch, and hopefully the lesson is beneficial for any with false-hopes
> of the advantages to pre-compiled headers!
>
> Thanks,
> Matt
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
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From blowekamp at mail.nih.gov  Tue Nov 17 09:46:51 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Tue, 17 Nov 2015 09:46:51 -0500
Subject: [ITK-dev] Precompiled header support
In-Reply-To: <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>
References: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>
 <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>
Message-ID: <6CDA8379-6EEF-4639-BA96-1B64677AD27F@mail.nih.gov>

Matt,

Great to share the results. But I would like a few specifics...

What compiler versions?
The Build time of what?  WrapITK? Perhaps this does not help building of ITK and ITK tests/examples, but would help applications which heavily use ITK. Maybe it'd improve SimpleITK build time or ITK Examples built against ITK?

Brad

On Nov 17, 2015, at 9:40 AM, Simon Alexander <skalexander at gmail.com> wrote:

> Hi Matt,
> 
> By any chance did you try this with microsofts build tools? 
> 
> On Fri, 13 Nov 2015 at 18:15 Matt McCormick <matt.mccormick at kitware.com> wrote:
> Hi folks,
> 
> In the hope of reducing ITK build time, I started work on adding
> pre-compiled header support to ITK here:
> 
>   http://review.source.kitware.com/#/c/20349/
> 
> Unfortunately, after testing the build times with both GCC and Clang,
> there was no notable benefit to build times.  I'm abandoning the
> patch, and hopefully the lesson is beneficial for any with false-hopes
> of the advantages to pre-compiled headers!
> 
> Thanks,
> Matt
> _______________________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
> _______________________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers

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From matt.mccormick at kitware.com  Tue Nov 17 10:03:19 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 17 Nov 2015 10:03:19 -0500
Subject: [ITK-dev] [ITK] About the last optimization on
	VariableLengthVector
In-Reply-To: <564AE974.3030008@c-s.fr>
References: <5644C9C7.6030603@c-s.fr>
 <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>
 <5649E058.5010905@c-s.fr>
 <CALzTN-R7y2QXKf=fJG6R9ON17hQJkVEJq+1nbmG=WGVMsEa6ig@mail.gmail.com>
 <564AE974.3030008@c-s.fr>
Message-ID: <CALzTN-Ra1+CRGmbN+ofv4d6kHM5vHDjyHteSYK4sNZLHo_UvPQ@mail.gmail.com>

On Tue, Nov 17, 2015 at 3:46 AM, Luc Hermitte <luc.hermitte at c-s.fr> wrote:
> Le 16/11/2015 19:44, Matt McCormick a ?crit :
>> On Mon, Nov 16, 2015 at 8:55 AM, Luc Hermitte <luc.hermitte at c-s.fr> wrote:
>>
>>>>> Third Problem: Local Variables
>>>>> 3.1- Auxiliary variables
>>>>> Some algorithms (e.g. BSplines interpolations) require dynamic data
>>>>> structures like matrices. This implies allocation at each iteration.
>>>>> This particular problem isn't addressed in this patch. The solution to
>>>>> 3.2 will help to provide an solution.
>>>>>
>>>>> 3.2- Factorized computations
>>>>> [...]
>>>>>
>>>>> We need a C++98 solution.
>>>>> The only way I see is to rely on cached variables.
>>>>> This means that the ImageFunctions are no longer [[pure]] functions :
>>>>> they'll mutate some variables that we want to allocate once per
>>>>> ImageFunction and ... per thread.
>>>>> Indeed the ImageFunctions shall be reentrant.
>>>>>
>>>>> I was first hoping to use thread_local variables. Alas they cannot be
>>>>> non-static attributes. This is a problem: if I'm not wrong, a same
>>>>> ImageFunction could be used multiple times in a same processing chain.
>>>>>
>>>>> We still have a simple solution, but it requires a second modification
>>>>> to Evaluate() signature: we need to pass the current ThreadId.
>>>>>
>>>>> The new drawback: code migration requires more work. We can not write
>>>>> Evaluate() in terms of EvaluateNoCopy() as the latter requires the
>>>>> threadId that the former doesn't know. This is the reason why I expect
>>>>> the tests to fail.
>>>>> Instead we need to convert all client code (like the WarpImageFilter)
>>>>> and have the default implementation of EvaluateNoCopy() to call the
>>>>> already written and not yet converted Evalutate().
>>>>
>>>> This would be messy, and it would not work very well since the
>>>> ImageFunction's are not involved in orchestration of the threading.
>>>> Instead, it would be better to make the necessary auxiliary variables
>>>> private variables.  Parallel code that uses ImageFunction's should
>>>> create one ImageFunction instance per thread.
>>>
>>> I'm afraid that with this choice, code that currently works well in
>>> parallel won't work anymore. End users will need to rewrite all uses of
>>> image functions in order to use them in MT code. And I guess we will
>>> also need to rewrite several test cases.
>>>
>>> Unless we duplicate the Evaluate() code : i.e. unless we keep the
>>> current version, and we add the new and optimized rewrite (for VLV in
>>> most cases, or for every kind of variables in some other cases (e.g.
>>> BSpline interpolation where caching matrix allocations helps reduce
>>> computation time))
>>> Duplicating image function algorithms doesn't seem to be a good choice
>>> either.
>>
>> Right. Yes, this will not be maintainable.
>>
>> A feasible way forward seems to use a C++11 code path when available
>> that has enhanced performance (i.e., use auto with C++11).  The C++98
>> version will not be as fast, but it will work. ITK leans towards
>> readability, maintainability, and program-ability over performance in
>> cases like this.
>
> With this solution, we loose computation factorizations.
>
>    auto p4 = p0 + (p1 - p0) * d0
>    auto p5 = p2 + (p3 - p2) * d1
>    output = p4 + (p5 - p4) * d2
>
> p4 computations will be done twice on VLVs and std::valarrays.
> // I suppose the dangling reference issue solved.
>
> Using cached variables and introducing a new threadId parameter greatly
> improve computation on VLV. But also on some other algorithms.
>
> Readability and maintainability won't be that reduced.

We are working towards better multi-threading infrastructure a la vtkSMPTools:

  http://www.kitware.com/blog/home/post/915

Generally, the number of threads used are not known a priori.
Moreover, they may change during parallel operations. Adding cache
variables to ImageFunction's requires making them re-entrant, which
will likely have a much more negative impact on performance than any
cached variable gains in these other models. Depending on the backend,
it could get very messy or it may not even be possible.


>>>>> Fourth Problem: heterogeneous data types (i.e. castings)
>>>>> The input image type, the output image type, and the internal pixel type
>>>>> may all be different. That's why the code contain so many static_casts.
>>>>>
>>>>> Alas a static_cast<> on pixels will induce the creation of new pixel values.
>>>>> This is contrary to the purpose of this patch.
>>>>> Copy constructors and assignment operators already support on-the-fly
>>>>> implicit static_casting.
>>>>> We still need to be able to require casting only when it's required.
>>>>> That's where the new function CastInto(), MoveInto() and As() come into
>>>>> rescue.
>>>>
>>>> So compiler's are not intelligent to make a static_cast<> a no-op when
>>>> the types are the same?
>>>
>>> Unfortunately, it doesn't seem so. Check
>>> http://stackoverflow.com/questions/19106826/can-static-cast-to-same-type-introduce-runtime-overhead
>>
>> Thanks for the link. That thread seems to indicate that POD types are
>> not an issue, and non-POD types may not be an issue outside of -O0.
>>
>>
>>> Moreover, in the case of converting VLV<double> to VLV<int>, with a
>>> static_cast, we'll force the creation of a new variable which is what I
>>> striving to avoid.
>>>
>>> Hence the new helper functions that'll use the converting assignment
>>> operators in case of VLV, or static_cast in all other cases.
>>
>> Sounds reasonable.
>>
>> What are the different definitions and uses for  CastInto(),
>> MoveInto(), and As()?
>
> MoveInto will try to swap() the content of two heavy variables like VLV
> when both are of the same type and equivalent to lvalues. If they are
> VLV but if their ValueTypes differ, the on-the-fly converting assignment
> operator is used. Otherwise, static_cast is used.
> The objective is not to use C++11 std::move as for the moment it isn't
> implemented as a move-and-swap, but as a destructive move.
>
> CastInto is to be used when swap cannot be used.
> This is the case when one of the pixel is actually a proxy/pixel_view.
> (i.e. when m_ManageMemory == false). Swapping pixels would alter the
> input image, this is unacceptable. Hence, CastInto.
>
> Both could be used independently of Expression Templates.
>
> As<> produces an expression template (on VLV) that will eventually
> execute a static_cast on each pixel component. On other types, it
> becomes a simple static_cast.

Cool!

Matt

From matt.mccormick at kitware.com  Tue Nov 17 10:14:04 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 17 Nov 2015 10:14:04 -0500
Subject: [ITK-dev] Precompiled header support
In-Reply-To: <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>
References: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>
 <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>
Message-ID: <CALzTN-RObKcJ30Vt1y1ZxLDCyv7jeypyj5k9AcwbdG98DUDOjA@mail.gmail.com>

Hi Simon,

No, I did not test with Visual Studio, but it should work with Visual
Studio also.

Thanks,
Matt

On Tue, Nov 17, 2015 at 9:40 AM, Simon Alexander <skalexander at gmail.com> wrote:
> Hi Matt,
>
> By any chance did you try this with microsofts build tools?
>
> On Fri, 13 Nov 2015 at 18:15 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi folks,
>>
>> In the hope of reducing ITK build time, I started work on adding
>> pre-compiled header support to ITK here:
>>
>>   http://review.source.kitware.com/#/c/20349/
>>
>> Unfortunately, after testing the build times with both GCC and Clang,
>> there was no notable benefit to build times.  I'm abandoning the
>> patch, and hopefully the lesson is beneficial for any with false-hopes
>> of the advantages to pre-compiled headers!
>>
>> Thanks,
>> Matt
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers

From matt.mccormick at kitware.com  Tue Nov 17 10:19:48 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 17 Nov 2015 10:19:48 -0500
Subject: [ITK-dev] Precompiled header support
In-Reply-To: <6CDA8379-6EEF-4639-BA96-1B64677AD27F@mail.nih.gov>
References: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>
 <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>
 <6CDA8379-6EEF-4639-BA96-1B64677AD27F@mail.nih.gov>
Message-ID: <CALzTN-R+WsEZP9jmH0xx2_BZgBpZ1Bkpr7TpcGpW9EdQGuxGdA@mail.gmail.com>

Hi Brad,

I tested with

  Clang 3.5.0

and

  GCC 4.9.3

on Linux. This was testing the build time of the library and the
tests.  The examples or WrapITK or SimpleITK could also use the
infrastructure, but more code would have to be added, and I do not
expect any different behavior there.

I did find the Clang generally builds faster than GCC.  My current
personal go-to build is Clang / Linux / MinSizeRel for development
performance.

Thanks,
Matt

On Tue, Nov 17, 2015 at 9:46 AM, Bradley Lowekamp
<blowekamp at mail.nih.gov> wrote:
> Matt,
>
> Great to share the results. But I would like a few specifics...
>
> What compiler versions?
> The Build time of what?  WrapITK? Perhaps this does not help building of ITK
> and ITK tests/examples, but would help applications which heavily use ITK.
> Maybe it'd improve SimpleITK build time or ITK Examples built against ITK?
>
> Brad
>
> On Nov 17, 2015, at 9:40 AM, Simon Alexander <skalexander at gmail.com> wrote:
>
> Hi Matt,
>
> By any chance did you try this with microsofts build tools?
>
> On Fri, 13 Nov 2015 at 18:15 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi folks,
>>
>> In the hope of reducing ITK build time, I started work on adding
>> pre-compiled header support to ITK here:
>>
>>   http://review.source.kitware.com/#/c/20349/
>>
>> Unfortunately, after testing the build times with both GCC and Clang,
>> there was no notable benefit to build times.  I'm abandoning the
>> patch, and hopefully the lesson is beneficial for any with false-hopes
>> of the advantages to pre-compiled headers!
>>
>> Thanks,
>> Matt
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
>

From matt.mccormick at kitware.com  Tue Nov 17 10:23:59 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 17 Nov 2015 10:23:59 -0500
Subject: [ITK-dev] [ANN] ITK 4.8.2 has been released!
Message-ID: <CALzTN-T7WTcLwTrpfTJZ_F7DN5dJHeDN5zRTcxWLKdcz+jb4bA@mail.gmail.com>

On behalf of the Insight Toolkit Community, we are happy to announce
the release of ITK 4.8.2!

Release files can be downloaded from:

  http://itk.org/ITK/resources/software.html

This is a patch release that fixes critical issues, regressions,
documentation, and compiler support. For compiler support, this
release adds support for Visual Studio 2015 and addresses CMake
configuration on some newer Linux distributions with separate
packaging of the gold linker. There are also a number of other various
fixes, described in the log below. Thanks to all the contributors.

The next feature release, 4.9.0, is scheduled for December, and it
will feature many exciting enhancements!


Enjoy ITK!


Changes from v4.8.1 to v4.8.2:

Bradley Lowekamp (5):
      BUG: Avoid potential exception in itk::Object::UnRegister
      BUG: Avoid null deference in PrintSelf with default construction
      BUG: Use const pointer in Set method for constant ReferenceImage ivar
      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
      BUG: Reduce number of targets with MSVC

Davis Vigneault (3):
      COMP: Warnings in itkVTKImageExport when compiling with c++11
      DOC: Expanded Canny Edge Detection Example
      COMP: Warnings in FFTW Classes when compiling with c++11

Eugene Prilepin (1):
      BUG: Fix a template name formation in python wrappings

Hans Johnson (5):
      STYLE: Minor code style issues for MGHIO
      COMP: Update to version for WikiExamples
      ENH: Update Sphinx for ITK 4.8.0
      ENH: Update MGHIO to be shared lib
      BUG: Fix MGHIO to fix write failures

Hyun Jae Kang (5):
      BUG: Fix HDF5 CMake configuration with VS2015
      BUG: Remove std::cout calls from class
      BUG: itkVTKImageIO class does not handle blank lines in VTK file header.
      BUG: Fixed older XCode linking error
      COMP: Fix data-conversion warning messages on Windows

Matthew McCormick (10):
      COMP: Do not use C++11 alignas in itkAlignedTypedef.
      COMP: Remove unused argument in ConditionVariableNoThreads.
      DOC: Correct spelling of Continuous.
      COMP: Fix KernelTransform SetFixedParameters argument type.
      STYLE: Use prefix increment operator in ImageBase.
      COMP: Use ITK's pygccxml by correctly setting up the sys.path
      COMP: Set CMP0054 to new.
      BUG: Remove duplicate inclusion of wrapping submodules.
      BUG: Fix detection of the gold linker.
      ENH: Bump CMakeLists.txt version to 4.8.2.

Michka Popoff (1):
      COMP: Disable incompatible modules when using Python 3 wrapping

Mikhail Isakov (1):
      BUG: DiffusionTensor3DReconstruction segfault if no baseline image

Simon Alexander (1):
      BUG: incorrect closest point computation

From seun at rogue-research.com  Wed Nov 18 08:52:22 2015
From: seun at rogue-research.com (Seun Odutola)
Date: Wed, 18 Nov 2015 08:52:22 -0500
Subject: [ITK-dev] Missing ITK Minc2 header
Message-ID: <0D985148-B123-4B5E-A272-87E2EE407D45@rogue-research.com>

Hello All,
 
     I am currently facing an issue, on installing ITK 4 (via cmake), I get a compile error as a result of a missing header (itk_minc2.h). It seems to that cmake doesn?t copy over the itk_minc2.h to the installation folder. For instance in the file (itkMINCImageIO.h) on installing I get this error 

#ifndef itkMINCImageIO_h
#define itkMINCImageIO_h

#include "itkImageIOBase.h"

#include "itkMatrix.h"

#include <itk_minc2.h>	// ?> this line flags an error (itk_minc2.h file not found)

#include "ITKIOMINCExport.h"

please note that other included headers in this file seem to be fine except that in the comment above. I would like to know if this is a bug on it?s part & if so how does one get around this. 
Thanks

Regards,
   Seun
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From seun at rogue-research.com  Wed Nov 18 16:08:46 2015
From: seun at rogue-research.com (Seun Odutola)
Date: Wed, 18 Nov 2015 16:08:46 -0500
Subject: [ITK-dev] Header clashes with Apple
Message-ID: <B5511817-E436-4E9F-AB38-D78D3C4EAD02@rogue-research.com>

Hi Everyone,

    Just wanted to bring to your attention a problem I faced working on a project using ITK 4.9 on Mac OS X 10.11, Apple declares a macro called 'check?  that takes just a parameter and apparently there is a name clash with a typedef of ITK?s (see itkPromoteType.h).

// snippet
template <typename TA, typename TB> struct PromoteType
{
  static TA a;
  static TB b;

  // Aimed at supporting overloads
  template <typename T> static Details::Identity<1>::Type& check(typename Details::SizeToType<1,  TA, TB>::Type, T);
  template <typename T> static Details::Identity<2>::Type& check(typename Details::SizeToType<2,  TA, TB>::Type, T);

  // Common numeric types
  static Details::Identity<3 >::Type& itkcheck(typename Details::SizeToType<3,  TA, TB>::Type, int);

// end of snippet

 I set about trying to fix this issue and on renaming the ?check? in my case I chose ?itkcheck?, rebuilt ITK and ran my project everything worked fine.

My proposal to the team if indeed I?m right is the above typedef need renaming as we can?t change Apple?s implementation so it?s most likely ITK will need to fix this. Currently renaming the check typedef works fine. 
Thanks

Regards Seun

p.s: I could submit a patch if that?s fine but I would like to know what name the ITK team would prefer to be substituted for the ?check' typedef above.

From matt.mccormick at kitware.com  Wed Nov 18 16:26:58 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 18 Nov 2015 16:26:58 -0500
Subject: [ITK-dev] Header clashes with Apple
In-Reply-To: <B5511817-E436-4E9F-AB38-D78D3C4EAD02@rogue-research.com>
References: <B5511817-E436-4E9F-AB38-D78D3C4EAD02@rogue-research.com>
Message-ID: <CALzTN-TKKKHr30nPwq4J5kEhc=qnWuFmkzdwj5ySVqUTwKgRzw@mail.gmail.com>

Hi Seun,

Thanks for discussing the issue.

I think a good name would be "Check".  Could you please submit a patch? [1]

Thanks,
Matt

[1] http://www.itk.org/Wiki/ITK/Git/Develop


On Wed, Nov 18, 2015 at 4:08 PM, Seun Odutola <seun at rogue-research.com> wrote:
> Hi Everyone,
>
>     Just wanted to bring to your attention a problem I faced working on a project using ITK 4.9 on Mac OS X 10.11, Apple declares a macro called 'check?  that takes just a parameter and apparently there is a name clash with a typedef of ITK?s (see itkPromoteType.h).
>
> // snippet
> template <typename TA, typename TB> struct PromoteType
> {
>   static TA a;
>   static TB b;
>
>   // Aimed at supporting overloads
>   template <typename T> static Details::Identity<1>::Type& check(typename Details::SizeToType<1,  TA, TB>::Type, T);
>   template <typename T> static Details::Identity<2>::Type& check(typename Details::SizeToType<2,  TA, TB>::Type, T);
>
>   // Common numeric types
>   static Details::Identity<3 >::Type& itkcheck(typename Details::SizeToType<3,  TA, TB>::Type, int);
>
> // end of snippet
>
>  I set about trying to fix this issue and on renaming the ?check? in my case I chose ?itkcheck?, rebuilt ITK and ran my project everything worked fine.
>
> My proposal to the team if indeed I?m right is the above typedef need renaming as we can?t change Apple?s implementation so it?s most likely ITK will need to fix this. Currently renaming the check typedef works fine.
> Thanks
>
> Regards Seun
>
> p.s: I could submit a patch if that?s fine but I would like to know what name the ITK team would prefer to be substituted for the ?check' typedef above.
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers

From bill.lorensen at gmail.com  Wed Nov 18 16:28:44 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Wed, 18 Nov 2015 16:28:44 -0500
Subject: [ITK-dev] Header clashes with Apple
In-Reply-To: <CALzTN-TKKKHr30nPwq4J5kEhc=qnWuFmkzdwj5ySVqUTwKgRzw@mail.gmail.com>
References: <B5511817-E436-4E9F-AB38-D78D3C4EAD02@rogue-research.com>
 <CALzTN-TKKKHr30nPwq4J5kEhc=qnWuFmkzdwj5ySVqUTwKgRzw@mail.gmail.com>
Message-ID: <CADZJ4hNw1WztDtpF+kOjotT1xke-hxVXx2asu8tt5sJPVMiOaQ@mail.gmail.com>

I think itkCheck might be better.

On Wed, Nov 18, 2015 at 4:26 PM, Matt McCormick
<matt.mccormick at kitware.com> wrote:
> Hi Seun,
>
> Thanks for discussing the issue.
>
> I think a good name would be "Check".  Could you please submit a patch? [1]
>
> Thanks,
> Matt
>
> [1] http://www.itk.org/Wiki/ITK/Git/Develop
>
>
> On Wed, Nov 18, 2015 at 4:08 PM, Seun Odutola <seun at rogue-research.com> wrote:
>> Hi Everyone,
>>
>>     Just wanted to bring to your attention a problem I faced working on a project using ITK 4.9 on Mac OS X 10.11, Apple declares a macro called 'check?  that takes just a parameter and apparently there is a name clash with a typedef of ITK?s (see itkPromoteType.h).
>>
>> // snippet
>> template <typename TA, typename TB> struct PromoteType
>> {
>>   static TA a;
>>   static TB b;
>>
>>   // Aimed at supporting overloads
>>   template <typename T> static Details::Identity<1>::Type& check(typename Details::SizeToType<1,  TA, TB>::Type, T);
>>   template <typename T> static Details::Identity<2>::Type& check(typename Details::SizeToType<2,  TA, TB>::Type, T);
>>
>>   // Common numeric types
>>   static Details::Identity<3 >::Type& itkcheck(typename Details::SizeToType<3,  TA, TB>::Type, int);
>>
>> // end of snippet
>>
>>  I set about trying to fix this issue and on renaming the ?check? in my case I chose ?itkcheck?, rebuilt ITK and ran my project everything worked fine.
>>
>> My proposal to the team if indeed I?m right is the above typedef need renaming as we can?t change Apple?s implementation so it?s most likely ITK will need to fix this. Currently renaming the check typedef works fine.
>> Thanks
>>
>> Regards Seun
>>
>> p.s: I could submit a patch if that?s fine but I would like to know what name the ITK team would prefer to be substituted for the ?check' typedef above.
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers



-- 
Unpaid intern in BillsBasement at noware dot com

From matt.mccormick at kitware.com  Wed Nov 18 16:47:06 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 18 Nov 2015 16:47:06 -0500
Subject: [ITK-dev] Missing ITK Minc2 header
In-Reply-To: <0D985148-B123-4B5E-A272-87E2EE407D45@rogue-research.com>
References: <0D985148-B123-4B5E-A272-87E2EE407D45@rogue-research.com>
Message-ID: <CALzTN-Qjkg_mR6MA5t07zW51q+RoD03=YxTv1qbQafLR2_sYgg@mail.gmail.com>

Hi Seun,

Please review this patch:

  http://review.source.kitware.com/#/c/20405/

Thanks,
Matt

On Wed, Nov 18, 2015 at 8:52 AM, Seun Odutola <seun at rogue-research.com> wrote:
> Hello All,
>
>      I am currently facing an issue, on installing ITK 4 (via cmake), I get
> a compile error as a result of a missing header (itk_minc2.h). It seems to
> that cmake doesn?t copy over the itk_minc2.h to the installation folder. For
> instance in the file (itkMINCImageIO.h) on installing I get this error
>
> #ifndef itkMINCImageIO_h
> #define itkMINCImageIO_h
>
> #include "itkImageIOBase.h"
>
> #include "itkMatrix.h"
>
> #include <itk_minc2.h> // ?> this line flags an error (itk_minc2.h file not
> found)
>
> #include "ITKIOMINCExport.h"
>
> please note that other included headers in this file seem to be fine except
> that in the comment above. I would like to know if this is a bug on it?s
> part & if so how does one get around this.
> Thanks
>
> Regards,
>    Seun
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>

From luc.hermitte at c-s.fr  Thu Nov 19 11:17:58 2015
From: luc.hermitte at c-s.fr (Luc Hermitte)
Date: Thu, 19 Nov 2015 17:17:58 +0100
Subject: [ITK-dev] Header clashes with Apple
In-Reply-To: <CADZJ4hNw1WztDtpF+kOjotT1xke-hxVXx2asu8tt5sJPVMiOaQ@mail.gmail.com>
References: <B5511817-E436-4E9F-AB38-D78D3C4EAD02@rogue-research.com>
 <CALzTN-TKKKHr30nPwq4J5kEhc=qnWuFmkzdwj5ySVqUTwKgRzw@mail.gmail.com>
 <CADZJ4hNw1WztDtpF+kOjotT1xke-hxVXx2asu8tt5sJPVMiOaQ@mail.gmail.com>
Message-ID: <564DF636.7080307@c-s.fr>

Le 18/11/2015 22:28, Bill Lorensen a ?crit :
> I think itkCheck might be better.

Here check() is a function not a macro.
The usual ITK naming convention would require Check, not itkCheck.

The fact some apple code has hijacked check instead of __check or _Check
is a very poor choice. We should not have had any problem with check()
(if we except KWStyle which, oddly, missed it)

Regards,
-- 
Luc Hermitte

> 
> On Wed, Nov 18, 2015 at 4:26 PM, Matt McCormick
> <matt.mccormick at kitware.com> wrote:
>> Hi Seun,
>>
>> Thanks for discussing the issue.
>>
>> I think a good name would be "Check".  Could you please submit a patch? [1]
>>
>> Thanks,
>> Matt
>>
>> [1] http://www.itk.org/Wiki/ITK/Git/Develop
>>
>>
>> On Wed, Nov 18, 2015 at 4:08 PM, Seun Odutola <seun at rogue-research.com> wrote:
>>> Hi Everyone,
>>>
>>>     Just wanted to bring to your attention a problem I faced working on a project using ITK 4.9 on Mac OS X 10.11, Apple declares a macro called 'check?  that takes just a parameter and apparently there is a name clash with a typedef of ITK?s (see itkPromoteType.h).
>>>
>>> // snippet
>>> template <typename TA, typename TB> struct PromoteType
>>> {
>>>   static TA a;
>>>   static TB b;
>>>
>>>   // Aimed at supporting overloads
>>>   template <typename T> static Details::Identity<1>::Type& check(typename Details::SizeToType<1,  TA, TB>::Type, T);
>>>   template <typename T> static Details::Identity<2>::Type& check(typename Details::SizeToType<2,  TA, TB>::Type, T);
>>>
>>>   // Common numeric types
>>>   static Details::Identity<3 >::Type& itkcheck(typename Details::SizeToType<3,  TA, TB>::Type, int);
>>>
>>> // end of snippet
>>>
>>>  I set about trying to fix this issue and on renaming the ?check? in my case I chose ?itkcheck?, rebuilt ITK and ran my project everything worked fine.
>>>
>>> My proposal to the team if indeed I?m right is the above typedef need renaming as we can?t change Apple?s implementation so it?s most likely ITK will need to fix this. Currently renaming the check typedef works fine.
>>> Thanks
>>>
>>> Regards Seun
>>>
>>> p.s: I could submit a patch if that?s fine but I would like to know what name the ITK team would prefer to be substituted for the ?check' typedef above.
>>> _______________________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://kitware.com/products/protraining.php
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
> 
> 
> 


From bill.lorensen at gmail.com  Fri Nov 20 10:29:24 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Fri, 20 Nov 2015 10:29:24 -0500
Subject: [ITK-dev] Future of ITKApps
Message-ID: <CADZJ4hNG8R5P11O9goBXFOu37i437tv9UPYjwmb6S6-w6PrenQ@mail.gmail.com>

Folks,

ITKApps contains applications written a long time ago. We as a group
have been patching the apps, fixing compile errors as ITK and VTK
api's change.

Also, many of the apps use an old version of FLTK as a gui.

I think the maintenance cost is too much for these old applications.

We should consider freezing it at VTK5.10 and the last ITK version
that works with it.

As Matt has mentioned there are several modern apps like slicer and
SNAP that can provide users with a better experience.

Thoughts?

Bill

-- 
Unpaid intern in BillsBasement at noware dot com

From hans-johnson at uiowa.edu  Fri Nov 20 10:49:19 2015
From: hans-johnson at uiowa.edu (Johnson, Hans J)
Date: Fri, 20 Nov 2015 15:49:19 +0000
Subject: [ITK-dev] Future of ITKApps
In-Reply-To: <CADZJ4hNG8R5P11O9goBXFOu37i437tv9UPYjwmb6S6-w6PrenQ@mail.gmail.com>
References: <CADZJ4hNG8R5P11O9goBXFOu37i437tv9UPYjwmb6S6-w6PrenQ@mail.gmail.com>
Message-ID: <9DB0559B-F7FD-4FEB-8423-C7398659CBD4@uiowa.edu>

+10  ? That is not a typo.  Really +10.

The slicer extensions framework is one of many improved solutions over fltk apps.
Heck? many of the demo apps could be easily re-written in SimpleITK with ipython notebook widgets.

Hans


On 11/20/15, 9:29 AM, "Insight-developers on behalf of Bill Lorensen" <insight-developers-bounces at itk.org on behalf of bill.lorensen at gmail.com> wrote:

>Folks,
>
>ITKApps contains applications written a long time ago. We as a group
>have been patching the apps, fixing compile errors as ITK and VTK
>api's change.
>
>Also, many of the apps use an old version of FLTK as a gui.
>
>I think the maintenance cost is too much for these old applications.
>
>We should consider freezing it at VTK5.10 and the last ITK version
>that works with it.
>
>As Matt has mentioned there are several modern apps like slicer and
>SNAP that can provide users with a better experience.
>
>Thoughts?
>
>Bill
>
>--
>Unpaid intern in BillsBasement at noware dot com
>_______________________________________________
>Powered by www.kitware.com
>
>Visit other Kitware open-source projects at
>http://www.kitware.com/opensource/opensource.html
>
>Kitware offers ITK Training Courses, for more information visit:
>http://kitware.com/products/protraining.php
>
>Please keep messages on-topic and check the ITK FAQ at:
>http://www.itk.org/Wiki/ITK_FAQ
>
>Follow this link to subscribe/unsubscribe:
>http://public.kitware.com/mailman/listinfo/insight-developers


________________________________
Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential and may be legally privileged.  If you are not the intended recipient, you are hereby notified that any retention, dissemination, distribution, or copying of this communication is strictly prohibited.  Please reply to the sender that you have received the message in error, then delete it.  Thank you.
________________________________

From matt.mccormick at kitware.com  Fri Nov 20 11:53:47 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 20 Nov 2015 11:53:47 -0500
Subject: [ITK-dev] Future of ITKApps
In-Reply-To: <9DB0559B-F7FD-4FEB-8423-C7398659CBD4@uiowa.edu>
References: <CADZJ4hNG8R5P11O9goBXFOu37i437tv9UPYjwmb6S6-w6PrenQ@mail.gmail.com>
 <9DB0559B-F7FD-4FEB-8423-C7398659CBD4@uiowa.edu>
Message-ID: <CALzTN-QkarPWryaJgfcZ9vbVSy1Q-ASOCiy1RT+C7h099SmAJw@mail.gmail.com>

+1.

I patched most of the apps for VTK 6, which is what we have in the
Superbuild, so I would like to get that merged.

FLTK makes these building these quite finicky and hard to maintain.
There are many other better tools and demonstrations out there on how
to develop an app based on ITK. Yet, these apps still provide value
both in the functionality they provide and in the minimal,
self-contained demonstration of how to use ITK + VTK.

There was a discussion recently on GitHub on how to use one of the
Apps on Windows [1]. Following that thread, I created a Docker image
to run the apps [2]. This runs on OSX / Linux / Windows, and can be
interacted with on all platforms, including tablets, phones. People
will be able to use the apps in perpetuity without requiring further
maintenance.

I propose we create the create the Docker apps, then freeze
development.  ITKApps released with ITK 4.9 would be the final
release.

Thanks,
Matt


[1] https://github.com/InsightSoftwareConsortium/ITKDevelopmentEnvironment/issues/1

[2] https://github.com/thewtex/docker-opengl

On Fri, Nov 20, 2015 at 10:49 AM, Johnson, Hans J
<hans-johnson at uiowa.edu> wrote:
> +10  ? That is not a typo.  Really +10.
>
> The slicer extensions framework is one of many improved solutions over fltk apps.
> Heck? many of the demo apps could be easily re-written in SimpleITK with ipython notebook widgets.
>
> Hans
>
>
> On 11/20/15, 9:29 AM, "Insight-developers on behalf of Bill Lorensen" <insight-developers-bounces at itk.org on behalf of bill.lorensen at gmail.com> wrote:
>
>>Folks,
>>
>>ITKApps contains applications written a long time ago. We as a group
>>have been patching the apps, fixing compile errors as ITK and VTK
>>api's change.
>>
>>Also, many of the apps use an old version of FLTK as a gui.
>>
>>I think the maintenance cost is too much for these old applications.
>>
>>We should consider freezing it at VTK5.10 and the last ITK version
>>that works with it.
>>
>>As Matt has mentioned there are several modern apps like slicer and
>>SNAP that can provide users with a better experience.
>>
>>Thoughts?
>>
>>Bill
>>
>>--
>>Unpaid intern in BillsBasement at noware dot com
>>_______________________________________________
>>Powered by www.kitware.com
>>
>>Visit other Kitware open-source projects at
>>http://www.kitware.com/opensource/opensource.html
>>
>>Kitware offers ITK Training Courses, for more information visit:
>>http://kitware.com/products/protraining.php
>>
>>Please keep messages on-topic and check the ITK FAQ at:
>>http://www.itk.org/Wiki/ITK_FAQ
>>
>>Follow this link to subscribe/unsubscribe:
>>http://public.kitware.com/mailman/listinfo/insight-developers
>
>
> ________________________________
> Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential and may be legally privileged.  If you are not the intended recipient, you are hereby notified that any retention, dissemination, distribution, or copying of this communication is strictly prohibited.  Please reply to the sender that you have received the message in error, then delete it.  Thank you.
> ________________________________
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers

From seun at rogue-research.com  Fri Nov 20 12:48:15 2015
From: seun at rogue-research.com (Seun Odutola)
Date: Fri, 20 Nov 2015 12:48:15 -0500
Subject: [ITK-dev] Unexpected Voxel Size difference between ITK3 & ITK4
Message-ID: <A112B7ED-4A30-423F-BD44-4EB0EC183F60@rogue-research.com>

Hello everyone,

       I have got this problem when reading a Minc2 file. I?m currently on the verge of completing the transition of ITK 3 to ITK 4 but realized on testing some of our minc2 files (Unit test) which previously passed in 3 seem to fail in 4. On further investigation of both codes (ITK 3 & 4) I noticed the reason for this failure was that for example reading a specific file I was expecting the Component Type returned to be SHORT whereas I was getting FLOAT.

Note: am running ITK git master

// snippet

// In ITK 4 (ITK git master)
// ITK file name : itkMINCImageIO.cxx
// function -> ReadImageInformation
// Minc2 test file :  mni_icbm152_t1_tal_nlin_asym_09c.mnc

// set the file data type
  if(slice_scaling_flag || global_scaling_flag)
    {
    switch ( volume_data_type )
      {
      case MI_TYPE_FLOAT:
        this->SetComponentType(FLOAT);
        break;
      case MI_TYPE_DOUBLE:
        this->SetComponentType(DOUBLE);
        break;
      case MI_TYPE_FCOMPLEX:
        this->SetComponentType(FLOAT);
        break;
      case MI_TYPE_DCOMPLEX:
        this->SetComponentType(DOUBLE);
        break;
      default:
        this->SetComponentType(FLOAT);
        break;
      } //end of switch
        //file will have do
    }
  else


// In ITK 3 (3.20.1)
// ITK file name : itkMINC2ImageIO.cxx
// function -> ReadImageInformation
// Minc2 test file :  mni_icbm152_t1_tal_nlin_asym_09c.mnc

// lines 397 onwards
// set the file data type
  switch (volume_data_type)
    {
    case MI_TYPE_BYTE:
      this->SetComponentType(CHAR);
      break;
    case MI_TYPE_UBYTE:
      this->SetComponentType(UCHAR);
      break;
    case MI_TYPE_SHORT:
      this->SetComponentType(SHORT);
      break;
    case MI_TYPE_USHORT:
      this->SetComponentType(USHORT);
      break;
    case MI_TYPE_INT:
      this->SetComponentType(INT);
      break;
    case MI_TYPE_UINT:
      this->SetComponentType(UINT);
      break;
    case MI_TYPE_FLOAT:
      this->SetComponentType(FLOAT);
      break;
    case MI_TYPE_DOUBLE:
      this->SetComponentType(DOUBLE);
      break;
    case MI_TYPE_SCOMPLEX:
      this->SetComponentType(SHORT);
      break;
    case MI_TYPE_ICOMPLEX:
      this->SetComponentType(INT);
      break;
    case MI_TYPE_FCOMPLEX:
      this->SetComponentType(FLOAT);
      break;
    case MI_TYPE_DCOMPLEX:
      this->SetComponentType(DOUBLE);
      break;
    default:
      itkDebugMacro("Bad data type ");
      return;
    } //end of switch


Note that in ITK 3 the slice_scaling_flag is set to way above the snippet but is never used as a condition for setting the ComponentType so in my case I get back the SHORT I was expecting whereas in ITK 4 (see code above) the slice_scaling_flag is always set to 1 and the ComponentType is redefined as FLOAT which isn?t what I?m expecting. Lastly, I have also confirmed that indeed it?s expected to be a SHORT not FLOAT by using Minc Info to examine the above file named test file. So my question is could this have been a mistake in ITK 4 which means the way ITK 3 went about handling the file was correct or could it have been the other way around.

Thanks 

Regards,
   Seun



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From matt.mccormick at kitware.com  Mon Nov 23 17:53:15 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 23 Nov 2015 17:53:15 -0500
Subject: [ITK-dev] [ANN] ITK 4.9 Release Candidate 1 is ready for testing!
Message-ID: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>

On behalf of the Insight Toolkit community, we are proud to announce that
ITK 4.9 release candidate 1 has been tagged and is available for testing!

Please take this opportunity to test the new features in the release
candidate.


To obtain the source code,

  git clone http://itk.org/ITK.git
 cd ITK
 git checkout -q --detach v4.9rc01

For more details, please see the Git documentation [1].


A few selected highlights for this release:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* New Remote modules: the Cuberille module for smooth generation of meshes
from binary segmentation images, and the AnisotropicDiffusionLBR module
improved edge-preserving smoothing.
* Build your own ITK module outside the source tree, add continuous
integration testing on GitHub, and easily add Python wrapping for your C++
algorithms.
* Python wrapping, including Python 3, builds faster with a more standard
installation
* Improved performance of itk::Image::GetPixel and operations on
itk::VariableLengthVector?s
* Generate a FlatStructuringElement from an image
* Point-set registration with time-varying B-splines
* Module dependencies can now be specified as public / private / compile /
test


Please test the release candidate and share your experiences on the mailing
list, issue tracker, and Gerrit Code Review. The new module dependency
specification mechanism may unearth missing dependencies for projects that
use ITK COMPONENTS with the CMake find_package command.


An Experimental build, which demonstrates how the test suite performs on
your local build system, can be submitted to the dashboard [2] with:

  mkdir ../ITK-build
  cd ../ITK-build
  cmake ../ITK
  ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit

Visual Studio builds must also add ?-C Release? to the ctest command.

Notify the mailing list if there are any unexpected failures.  Testing your
own applications against the RC is also appreciated.


Congratulations and well done to the 35 contributors to this release. We
would especially like to recognize the new contributors: Mikhail Isakov,
Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun Odutola,
Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson, Luc
Hermitte, Laurentiu Nicola, and Floris Berendsen.


The final release is scheduled for mid-December.


[1] http://www.itk.org/Wiki/ITK/Git

[2] http://open.cdash.org/index.php?project=Insight



New Features
---------------------

Wrapping improvements
^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* Python 3 supported
* Wrapping builds much faster due to CastXML binaries
* LandmarkBasedTransformInitializer now wrapped
* NumPy bridge with VisualStudio
* Wrapping for the MinimalPathExtraction module
* Wrapping is now installed into Python?s site-packages directory in the
?itk? package
* Wrapping package size is decreased
* Better package portability on Mac OSX


New Remote Modules
^^^^^^^^^^^^^^^^^^^^^^^^^^

* Cuberille
   * Insight Journal Article: http://hdl.handle.net/10380/3186
* AnisotropicDiffusionLBR
   * Insight Journal Article: http://hdl.handle.net/10380/3505
   * Web browser reproducibility: http://www.kitware.com/blog/home/post/942


Core Improvements
^^^^^^^^^^^^^^^^^^^^^^^

* External Modules can now be developed outside of the ITK source tree and
on GitHub
   * Details: http://www.kitware.com/blog/home/post/997
* New utilities in itk::Math:
   * AlmostEquals
   * NotAlmostEquals
   * ExactlyEquals
   * NotExactlyEquals
* New itk::NumericTraits
   * IsInteger
   * IsSigned
* Improved C++11 support
   * New ITK_DELETE_FUNCTION macro for ?=delete?
   * New ITK_NOEXCEPT macro for the ?noexcept? keyword
* Improved capabilities of itk::ResourceProbe and
itk::ResourceProbesCollectorBase
* Improve numerical stability in VNL eigen system estimation
* itksys_ios:: and itksys_stl:: have been remove (use std::)


Filtering Improvements
^^^^^^^^^^^^^^^^^^^^^^^^^^^

* Generate a FlatStructuringElement from an image
* WarpImageFilter support VectorImage?s
* ConvertLabelMap supports different LabelMap types
* ImageToPathFilter moved from the ITKReview to the ITKPath module
* itk::MovingHistogramImageFilter moved to the ITKImageFilterBase module


Registration Improvements
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* Point-set registration with time-varying B-splines


Build Improvements
^^^^^^^^^^^^^^^^^^^^^^^^

* Module dependencies can now be specified as public / private / compile /
test
* BUILD_EXAMPLES CMake option is now OFF by default
* Option to export all library symbols on Windows:
   * Details: http://www.kitware.com/blog/home/post/939
* Expat third party library is now name mangled
* Many more modules can be built as shared libraries
* KWStyle is automatically built and configured when tests are built


Performance Improvements
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* New MetaProgrammingLibrary namespace (itk::mpl) holds members for
metaprogramming
   * itk::mpl::{TrueType,FalseType}
   * itk::mpl::{If,Not,And,Or,Xor}
   * itk::mpl::EnableIf
   * itk::mpl::IsBaseOf
   * itk::mpl::IsConvertible
   * itk::mpl::IsNumber
   * itk::mpl::IsSame
   * itk::mpl::PromoteType
* Image::GetPixel performance improvements
* Many itk::VariableLengthVector performance improvements
* AdaptiveHistogramEqualization uses a moving histogram
* WarpImageFilter performance improvements


Documentation Improvements
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
* ITK Software Guide improvements
   * How to use Python wrapping
   * How to create an ITK module
   * Improvements to segmentation examples
   * Expanded Canny edge detection example
   * Expanded tree container example


Third Party Library Updates
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* FFTW updated to latest upstream
* Build with recent OpenCV 2 and 3
* Build with the latest VTK
* PNG update to the latest upstream
* GDCM updated to the latest upstream
* KWSys updated to the latest upstream
* MINC updated to the latest upstream
* SWIG updated to the latest upstream
* Third party PNG and MINC are now Git subtrees


Style improvements -- ITK gets more stylish with every release!
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* Private copy constructors and operator= use ITK_DELETE_FUNCTION


Improved code coverage -- we are at 84.9%!
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^


* *Lots* of important bug fixes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^


* And much more! See details in the log below.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^



Changes from v4.8.0..v4.9rc01
--------------------------------------------


Abhishek Tiwari (1):
     BUG: "tmpImageIndex" not initialized to 0.

Adam Snyder (1):
     PERF: Reworked MMI Threading using a per-thread buffer

Alexander Leinoff (6):
     ENH: Adds IsInteger and IsSigned to NumericTraits.
     COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
     ENH: Adds ExactlyEquals and NotExactlyEquals functions to itkMath.h
     COMP: Removes floating-point equality checks
     ENH: COMP: Adds support for complex values to Math::AlmostEquals
     ENH: Updates fftw dependency

Arnaud Gelas (5):
     COMP: fix warning (unused local typedef)
     COMP: simplify ITKVideoBridgeOpenCV dependency
     DOC: add doxgen documentation for BinaryImageToLevelSetImageAdaptor
     ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
     COMP: fix compilation error with OpenCV2 and OpenCV3

Betsy McPhail (1):
     BUG: Improve buffer alignment in OctreeNode .

Bill Hoffman (2):
     ENH: Use new CMake Windows export symbol dll feature.
     COMP: Put vnl_export.h in the list of sources so it gets installed.

Bill Lorensen (4):
     COMP: VTkGlue linker errors
     BUG: Inappropriate use of AlmostEquals
     ENH: Bump tag for wiki examples
     ENH: Better layout strategy

Brad King (3):
     ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
     ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
     ENH: Update CMake Policy settings in Testing/TestExternal project

Bradley Lowekamp (31):
     BUG: Avoid null deference in PrintSelf with default construction
     ENH: Enable base classes for templates of landmark initializer
     STYLE: Use "Swap" for ITK member name
     BUG: Demonstrate Eigen analysis failure
     BUG: Fix computation of Eigen analysis
     ENH: Update DiscreteHessianGaussian Test baseline
     ENH: Correctly demonstrate float point Eigen failure
     ENH: compile vnl_math_hypot, and use at least double
     ENH: Adding initial update script from used libpng version.
     ENH: removing non-subtree files for itkpng
     ENH: Ported ITK changes for building to subtree merged code
     ENH: Update libpng update script for v1.6.9
     BUG: Use ParameterValueType for computation of landmark affine
     ENH: Wrap LandmarkBasedTransformInitializer
     BUG: Avoid potential exception in itk::Object::UnRegister
     ENH: Update itkpng zlib, configuration, and rename
     ENH: Update itkpng name mangling
     BUG: Use const pointer in Set method for constant ReferenceImage ivar
     BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
     BUG: Demonstrate side effect on registration due to BSplineScatter
change
     ENH: Move MovingHistogramImageFilter base classes to ImageFilterBase
     BUG: Avoid potential exception in itk::Object::UnRegister
     BUG: Avoid null deference in PrintSelf with default construction
     BUG: Use const pointer in Set method for constant ReferenceImage ivar
     ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram base
     COMP: address sign unsigned comparison warning
     COMP: Address signed unsigned comparison warning
     COMP: Address unused member variable and methods in anonymous ns
     BUG: Fix segfault when with empty IsolatedWatershed Threshold range
     BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
     BUG: Reduce number of targets with MSVC

Davis Vigneault (7):
     DOC: Minor improvements to segmentation examples.
     DOC: Expanded Canny Edge Detection Example
     DOC: Expanded TreeContainer Example
     COMP: Warnings in itkVTKImageExport when compiling with c++11
     COMP: Warnings in FFTW Classes when compiling with c++11
     COMP: Update Git Tag for Subdivision Module
     COMP: Warnings in FFTW Classes when compiling with c++11

D?enan Zuki? (1):
     STYLE: better formatting of the "usage" message

Eugene Prilepin (1):
     BUG: Fix a template name formation in python wrappings

Floris Berendsen (1):
     STYLE: Improve naming conventions in comments.

Hans Johnson (29):
     STYLE: Instrument for FixedParameters typedef
     BUG: Demonstrate DisplacementTransformFailure
     BUG: FixedParameters should be double precision
     STYLE: Minor code style issues for MGHIO
     COMP: Update to version for WikiExamples
     ENH: Update Sphinx for ITK 4.8.0
     ENH: Update MGHIO to be shared lib
     ENH: Provide consistent floating point comparisons
     BUG: Fix MGHIO to fix write failures
     PERF: Remove floating point as sentinal value
     COMP: Const correctness needs to be maintained
     BUG: Preserve backwards compatibility
     DOC: Provide consistent naming in comments
     ENH: Conversion between transform type tolerance
     STYLE: Prefer initialization to assignment
     ENH: Missing ITK_OVERRIDE
     COMP: Need to propagate ITKGDCM
     COMP: Need to propagate ITKGDCM
     COMP: Add missing ITK_OVERRIDE
     STYLE: Minor code style issues for MGHIO
     COMP: Update to version for WikiExamples
     ENH: Update Sphinx for ITK 4.8.0
     ENH: Update MGHIO to be shared lib
     BUG: Fix MGHIO to fix write failures
     ENH: C++11 allows for rigorous =delete
     COMP: Remove unnecessary failing assert test
     ENH: Ignore internal files for the Clion editor
     COMP: Fix VNL compilation for wider C++11 support
     BUG: In configuration test need to mirror code

Hyun Jae Kang (27):
     BUG: Remove std::cout calls from class
     BUG: Avoid an unexpected output of static_cast
     BUG: Update python example codes for ImageRegistration
     BUG: Retrieve the missed wrap file
     BUG: itkVTKImageIO class does not handle blank lines in VTK file
header.
     BUG: Fix HDF5 CMake configuration with VS2015
     BUG: Fix a compilation issue on ITK4 with FFTW and shared libraries
     BUG: Fixed older XCode linking error
     ENH: Use CastXML binaries when building with x86_64 Mac OS X
     BUG: Remove std::cout calls from class
     BUG: itkVTKImageIO class does not handle blank lines in VTK file
header.
     BUG: Fixed older XCode linking error
     ENH: Add automatic KWStyle build and configuration setup
     COMP: KWStyle shadow, format-nonliteral and autological-compare
warning.
     COMP: Fixed the warning messages from itkGPU Module
     COMP: Fixed a warning message of unused-private-field
     COMP: Apply latest version of KWStyle
     COMP: Update KWStyle to fix its additional warning messages
     COMP: Update KWStyle to fix its additional warning messages
     COMP: Fix data-conversion warning messages on Windows
     ENH: Update itkResourceProbe to calculate statistical data
     COMP: Fix data-conversion warning messages on VS14
     COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
     ENH: Update the Report() function of itkResourceProbesCollectorBase
     COMP: Fix data-conversion warning message on itkResourceProbe
     COMP: Fix additional warning messages of KWStyle
     COMP: Fix data-conversion warning messages

Jon Haitz Legarreta (6):
     ENH: Add test for itkStatisticsUniqueLabelMapFilter
     BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
     BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
     BUG: Test for StatisticsUniqueLabelMapFilter stability
     ENH: Add test for itkParametricStpaceToImageSpaceFilter
     ENH: Improve code coverage for itkParametricSpaceToImageSpaceMeshFilter

Julien Michel (1):
     ENH: Support of VectorImage as template parameters for WarpImageFilter

Junjie Bai (2):
     BUG: ConvertLabelMap with different LabelMapTypes
     BUG: LabelObject CopyAttribute support different LabelObject type

KWSys Robot (4):
     KWSys 2015-07-10 (c9336bcf)
     KWSys 2015-07-30 (f63febb7)
     KWSys 2015-08-24 (cdaf522c)
     KWSys 2015-08-28 (dc3fdd7f)

LIBPNG Upstream (2):
     PNG 2009-04-06 (e68f5a36)
     PNG 2014-02-05 (3e753eb8)

Laurentiu Nicola (2):
     PERF: Avoid temporary smartptr in ProcessObject::GetInput
     PERF: Optimize WarpImageFilter by avoiding refcount bouncing

Luc Hermitte (8):
     PERF: itk::Image::GetPixel() performance improvment.
     PERF: Performance enhancements on VariableLengthVectors 1/...
     ENH: Dependencies on itkVariableLengthVector.h reduced
     BUG: Error in VariableLengthVector Unit Tests
     PERF: Performance enhancements on VLV 2/...
     PERF: Performances enhancements on VLV 3/...
     COMP: Fix signed/unsigned warnings
     BUG: std::copy/fill on empty VLV

Lucas Gandel (4):
     ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
     BUG: Fixing ImageToPathFilter wrapping call from Review Module
     STYLE: Fix KWStyle dashboard errors
     BUG: Fix external module BUILD_SHARED_LIBS status

Mathieu Malaterre (1):
     BUG: Name mangle the included expat third party library.

Matthew McCormick (94):
     ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
     ENH: Add AnisotropicDiffusionLBR Remote Module.
     ENH: Bump ITK version to 4.9.0.
     BUG: Remove std::cout calls from classes.
     COMP: Remove unused argument in ConditionVariableNoThreads.
     BUG: Implement UpdateLargestPossibleRegion for ImageToVTKImageFilter.
     COMP: Add link interface specification for wrapping
target_link_libraries.
     STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
     COMP: Fix MINCTransformIO factory registration.
     COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
     COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
     BUG: Initialize mutex for 32 bit AtomicInt.
     ENH: Use CastXML binaries when building with x86_64 Linux.
     STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
     COMP: Disable the gold linker for static builds on Ubuntu 14.04.
     ENH: Use Windows binaries for CastXML.
     ENH: Add better scoping in igenerator.py.
     BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
     BUG: LevelSetsv4 used signed char instead of char.
     ENH: Add better scoping to idx.py.
     COMP: Define newSize and oldSize in VariableLengthVector.
     STYLE: Use prefix increment operator in ImageBase.
     DOC: Correct spelling of Continuous.
     ENH: Add more progress information to IterativeClosestPoint2.
     BUG: Build BridgeNumPy with Visual Studio.
     ENH: Add ITKModuleExternal.cmake
     COMP: Wrap Image< bool, D > for FlatStructuringElement.
     BUG: Use CastXML binary built in Release.
     BUG: ContinuousIndex should not be templated over TCoordRep.
     COMP: Set CMP0054 to new.
     COMP: Address line length too long for Software Guide.
     COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
     BUG: Support Python 3 wrapping module initialization.
     BUG: Update itkTemplate.py for Python 3.
     BUG: Update itkExtras.py for Python 3.
     BUG: Prevent Python callback addition recursion.
     BUG: Fix test scripts for Python 3.
     BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
     ENH: Allow projects to build against an external module.
     ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
     ENH: Rename _cable_ to _wrappers_.
     BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
     BUG: Define ITK_WRAPPING_PARSER when wrapping.
     COMP: Do not use C++11 alignas in itkAlignedTypedef.
     ENH: Bump CMakeLists.txt version to 4.8.1.
     BUG: Pass the CMAKE_CXX_FLAGS to castxml.
     ENH: Bump CastXML version to 2015-30-29.
     ENH: Bump LLVM / Clang to 3.7.0.
     COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
     COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
     COMP: Use itkSimpleNewMacro in ThreadedIteratorRangePartitionerTest.
     ENH: Add wrapping support for building modules externally.
     BUG: Fix KWStyle test paths when building a module externally.
     ENH: Add Cuberille Remote module.
     COMP: Remove carriage returns from Cuberille remote.
     COMP: Remove unused argument in ConditionVariableNoThreads.
     DOC: Correct spelling of Continuous.
     ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
     COMP: Fix KernelTransform SetFixedParameters argument type.
     STYLE: Use prefix increment operator in ImageBase.
     COMP: Use ITK's pygccxml by correctly setting up the sys.path
     Revert "COMP: Put vnl_export.h in the list of sources so it gets
installed."
     BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
     ENH: Marking wrapping CMake configuration variables as advanced.
     STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
     COMP: Non-virtual copy attribute members in LabelMap cannot have
override.
     COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
     COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
     ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
     BUG: Improve KWStyle ExternalProject utilization.
     ENH: Remove old KWStyle build script.
     COMP: Address VariableLengthVector Doxygen rhs @param not found.
     ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
     ENH: Install Python bindings into site-packages.
     ENH: Improve readability of Python site-packages path detection.
     COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
warning.
     BUG: ITKCommon publically depends on ITKDoubleConversion.
     COMP: Improve scoping in CovariantVectorGeometryTest.
     ENH: Improves names and export of module dependencies.
     STYLE: Improve namespace bracket style in itkIsConvertible.
     COMP: Set CMP0054 to new.
     BUG: Remove unused wrapping files.
     BUG: Do install install wrapping development files.
     ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
     BUG: Remove duplicate inclusion of wrapping submodules.
     COMP: Do not use C++ style comments for Doxygen cond.
     BUG: Fix detection of the gold linker.
     BUG: Update Python package installation locations.
     ENH: Bump CMakeLists.txt version to 4.8.2.
     ENH: Change BUILD_EXAMPLES default to OFF.
     BUG: Use 'from itk import ITKCommon' in module2module test.
     COMP: Link to VTK Python when built with Kits support.
     BUG: Install itk_minc2.h header.
     COMP: ITKIOMINC has a public dependency on ITKIOImageBase.

Michka Popoff (9):
     ENH: Update to swig 3.0.7
     ENH: Do not link against specific Python library on OS X
     COMP: Fix wrapping warnings when building with ITK_WRAP_IMAGE_DIMS=2
     COMP: Add missing wrapping for TransformBase
     COMP: Use ITK's pygccxml by correctly setting up the sys.path
     COMP: Disable incompatible modules when using Python 3 wrapping
     COMP: Move MovingHistogramImageFilterBase wrapping to ImageFilterBase
module
     COMP: Disable incompatible modules when using Python 3 wrapping
     ENH: Allow operations on Indexes and Offsets in Python

Mikhail Isakov (1):
     BUG: DiffusionTensor3DReconstruction segfault if no baseline image

Nick Tustison (5):
     BUG:  Set a default b-spline epsilon.
     ENH: Adding testing for closed loop.
     BUG:  Updating B-spline classes with the same epsilon strategy.
     PERF:  Switch vnl_vectors for fixed arrays.
     ENH:  Point-set registration with time-varying B-spline.

Olivier Commowick (3):
     BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen system
     BUG: Correct under/overflows in vnl_math_hypot (taken from pythag from
V3P)
     BUG: Switch eigenvalues computation to double

Pablo Hernandez-Cerdan (2):
     ENH: Help class for itkFlatStructuringElement with constructor from
images.
     COMP: Fix test errors and warnings in FlatStructuringElement.

Seun Odutola (1):
     COMP: Fixed name clash with Apple header (check Macro), renamed check
to Check

Shawn Waldon (1):
     COMP: Set target OS X version in environment for tools using compiler

Simon Alexander (1):
     BUG: incorrect closest point computation

Tobias Wood (2):
     BUG: LBFGSB was printing messages even with debug switched off.
     BUG: Removed an unguarded print statement.

Vladimir S. FONOV (9):
     BUG: Missing ITKIOMINC_EXPORT on __Private()
     COMP: Changing the order of HDF5 library components
     COMP: Splitting up IOMINC module into two parts: MINC and Transform
     STYLE: updated comments to properly reference LIBMINC
     ENH: Add script to merge upstream MINC as a subtree
     MINC 2015-07-23 (c033d431)
     COMP: Update MINC CMake code
     MINC 2015-08-18 (6d7e3ba8)
     MINC 2015-09-13 (95cd5374)

Xiaoxiao Liu (1):
     DOC: update email address for xiaoxiao.

Zach Williamson (10):
     BUG: Use correct libraries for ImageFusion tests
     ENH: Consolidate Library Dependencies
     COMP: Add a missing link to Review module
     COMP: Use correct linking macro in DCMTK
     BUG: Use correct libraries for TestKernel tests
     COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
     ENH: Use new linking system macros
     PERF: Avoid searching private dependencies for include directories
     COMP: Recover missing dependencies
     ENH: use new linking macros in Filtering module



-----------------------------------------------------
Errors or omissions? Please fix them here:

https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
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From mohammedrashadkm at gmail.com  Tue Nov 24 10:39:37 2015
From: mohammedrashadkm at gmail.com (Rashad Kanavath)
Date: Tue, 24 Nov 2015 16:39:37 +0100
Subject: [ITK-dev] clang throws a lot of -Wunknown-attributes warning.
Message-ID: <CANNqv9dKMUwETQFsVW1kE72J7vfFi=0KAuhdN7T5KX_eXtraew@mail.gmail.com>

Hello all,

I am getting a lot of warnings when using itk with clang compiler.

clang version: 3.5.0
Fedora Linux 22 x86_64
ITK trunk

In file included from
/home/otbtesting/sources/orfeo/trunk/OTB-Nightly/Modules/Core/SpatialObjects/include/otbLineSpatialObjectList.h:23:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkLineSpatialObject.h:23:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkPointBasedSpatialObject.h:21:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkSpatialObject.h:23:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineGeometryFrame.h:23:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkScalableAffineTransform.h:21:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineTransform.h:21:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkMatrixOffsetTransformBase.h:24:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkTransform.h:25:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.h:1348:
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.hxx:312:3:
warning: unknown attribute 'error' ignored [-Wunknown-attributes]
  itkStaticAssert(
  ^
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkStaticAssert.h:40:35:
note: expanded from macro 'itkStaticAssert'
      ({extern int __attribute__((error(str))) StaticAssertFailure(); \
                                  ^
3 warnings generated.

-- 
Regards,
   Rashad
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From skalexander at gmail.com  Wed Nov 25 09:07:13 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 14:07:13 +0000
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
	ready for testing!
In-Reply-To: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
Message-ID: <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>

Looks like a few problems with x64 build on visual studio 2015 - do you
have a test machine in this configuration?

On Mon, 23 Nov 2015 at 17:53 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> On behalf of the Insight Toolkit community, we are proud to announce that
> ITK 4.9 release candidate 1 has been tagged and is available for testing!
>
> Please take this opportunity to test the new features in the release
> candidate.
>
>
> To obtain the source code,
>
>   git clone http://itk.org/ITK.git
>  cd ITK
>  git checkout -q --detach v4.9rc01
>
> For more details, please see the Git documentation [1].
>
>
> A few selected highlights for this release:
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * New Remote modules: the Cuberille module for smooth generation of meshes
> from binary segmentation images, and the AnisotropicDiffusionLBR module
> improved edge-preserving smoothing.
> * Build your own ITK module outside the source tree, add continuous
> integration testing on GitHub, and easily add Python wrapping for your C++
> algorithms.
> * Python wrapping, including Python 3, builds faster with a more standard
> installation
> * Improved performance of itk::Image::GetPixel and operations on
> itk::VariableLengthVector?s
> * Generate a FlatStructuringElement from an image
> * Point-set registration with time-varying B-splines
> * Module dependencies can now be specified as public / private / compile /
> test
>
>
> Please test the release candidate and share your experiences on the
> mailing list, issue tracker, and Gerrit Code Review. The new module
> dependency specification mechanism may unearth missing dependencies for
> projects that use ITK COMPONENTS with the CMake find_package command.
>
>
> An Experimental build, which demonstrates how the test suite performs on
> your local build system, can be submitted to the dashboard [2] with:
>
>   mkdir ../ITK-build
>   cd ../ITK-build
>   cmake ../ITK
>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>
> Visual Studio builds must also add ?-C Release? to the ctest command.
>
> Notify the mailing list if there are any unexpected failures.  Testing
> your own applications against the RC is also appreciated.
>
>
> Congratulations and well done to the 35 contributors to this release. We
> would especially like to recognize the new contributors: Mikhail Isakov,
> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun Odutola,
> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson, Luc
> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>
>
> The final release is scheduled for mid-December.
>
>
> [1] http://www.itk.org/Wiki/ITK/Git
>
> [2] http://open.cdash.org/index.php?project=Insight
>
>
>
> New Features
> ---------------------
>
> Wrapping improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Python 3 supported
> * Wrapping builds much faster due to CastXML binaries
> * LandmarkBasedTransformInitializer now wrapped
> * NumPy bridge with VisualStudio
> * Wrapping for the MinimalPathExtraction module
> * Wrapping is now installed into Python?s site-packages directory in the
> ?itk? package
> * Wrapping package size is decreased
> * Better package portability on Mac OSX
>
>
> New Remote Modules
> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Cuberille
>    * Insight Journal Article: http://hdl.handle.net/10380/3186
> * AnisotropicDiffusionLBR
>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>    * Web browser reproducibility:
> http://www.kitware.com/blog/home/post/942
>
>
> Core Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^
>
> * External Modules can now be developed outside of the ITK source tree and
> on GitHub
>    * Details: http://www.kitware.com/blog/home/post/997
> * New utilities in itk::Math:
>    * AlmostEquals
>    * NotAlmostEquals
>    * ExactlyEquals
>    * NotExactlyEquals
> * New itk::NumericTraits
>    * IsInteger
>    * IsSigned
> * Improved C++11 support
>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
> * Improved capabilities of itk::ResourceProbe and
> itk::ResourceProbesCollectorBase
> * Improve numerical stability in VNL eigen system estimation
> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>
>
> Filtering Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Generate a FlatStructuringElement from an image
> * WarpImageFilter support VectorImage?s
> * ConvertLabelMap supports different LabelMap types
> * ImageToPathFilter moved from the ITKReview to the ITKPath module
> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase module
>
>
> Registration Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Point-set registration with time-varying B-splines
>
>
> Build Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Module dependencies can now be specified as public / private / compile /
> test
> * BUILD_EXAMPLES CMake option is now OFF by default
> * Option to export all library symbols on Windows:
>    * Details: http://www.kitware.com/blog/home/post/939
> * Expat third party library is now name mangled
> * Many more modules can be built as shared libraries
> * KWStyle is automatically built and configured when tests are built
>
>
> Performance Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
> metaprogramming
>    * itk::mpl::{TrueType,FalseType}
>    * itk::mpl::{If,Not,And,Or,Xor}
>    * itk::mpl::EnableIf
>    * itk::mpl::IsBaseOf
>    * itk::mpl::IsConvertible
>    * itk::mpl::IsNumber
>    * itk::mpl::IsSame
>    * itk::mpl::PromoteType
> * Image::GetPixel performance improvements
> * Many itk::VariableLengthVector performance improvements
> * AdaptiveHistogramEqualization uses a moving histogram
> * WarpImageFilter performance improvements
>
>
> Documentation Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
> * ITK Software Guide improvements
>    * How to use Python wrapping
>    * How to create an ITK module
>    * Improvements to segmentation examples
>    * Expanded Canny edge detection example
>    * Expanded tree container example
>
>
> Third Party Library Updates
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * FFTW updated to latest upstream
> * Build with recent OpenCV 2 and 3
> * Build with the latest VTK
> * PNG update to the latest upstream
> * GDCM updated to the latest upstream
> * KWSys updated to the latest upstream
> * MINC updated to the latest upstream
> * SWIG updated to the latest upstream
> * Third party PNG and MINC are now Git subtrees
>
>
> Style improvements -- ITK gets more stylish with every release!
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>
>
> Improved code coverage -- we are at 84.9%!
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
>
> * *Lots* of important bug fixes
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
>
> * And much more! See details in the log below.
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
>
>
> Changes from v4.8.0..v4.9rc01
> --------------------------------------------
>
>
> Abhishek Tiwari (1):
>      BUG: "tmpImageIndex" not initialized to 0.
>
> Adam Snyder (1):
>      PERF: Reworked MMI Threading using a per-thread buffer
>
> Alexander Leinoff (6):
>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to itkMath.h
>      COMP: Removes floating-point equality checks
>      ENH: COMP: Adds support for complex values to Math::AlmostEquals
>      ENH: Updates fftw dependency
>
> Arnaud Gelas (5):
>      COMP: fix warning (unused local typedef)
>      COMP: simplify ITKVideoBridgeOpenCV dependency
>      DOC: add doxgen documentation for BinaryImageToLevelSetImageAdaptor
>      ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
>      COMP: fix compilation error with OpenCV2 and OpenCV3
>
> Betsy McPhail (1):
>      BUG: Improve buffer alignment in OctreeNode .
>
> Bill Hoffman (2):
>      ENH: Use new CMake Windows export symbol dll feature.
>      COMP: Put vnl_export.h in the list of sources so it gets installed.
>
> Bill Lorensen (4):
>      COMP: VTkGlue linker errors
>      BUG: Inappropriate use of AlmostEquals
>      ENH: Bump tag for wiki examples
>      ENH: Better layout strategy
>
> Brad King (3):
>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>      ENH: Update CMake Policy settings in Testing/TestExternal project
>
> Bradley Lowekamp (31):
>      BUG: Avoid null deference in PrintSelf with default construction
>      ENH: Enable base classes for templates of landmark initializer
>      STYLE: Use "Swap" for ITK member name
>      BUG: Demonstrate Eigen analysis failure
>      BUG: Fix computation of Eigen analysis
>      ENH: Update DiscreteHessianGaussian Test baseline
>      ENH: Correctly demonstrate float point Eigen failure
>      ENH: compile vnl_math_hypot, and use at least double
>      ENH: Adding initial update script from used libpng version.
>      ENH: removing non-subtree files for itkpng
>      ENH: Ported ITK changes for building to subtree merged code
>      ENH: Update libpng update script for v1.6.9
>      BUG: Use ParameterValueType for computation of landmark affine
>      ENH: Wrap LandmarkBasedTransformInitializer
>      BUG: Avoid potential exception in itk::Object::UnRegister
>      ENH: Update itkpng zlib, configuration, and rename
>      ENH: Update itkpng name mangling
>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>      BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
>      BUG: Demonstrate side effect on registration due to BSplineScatter
> change
>      ENH: Move MovingHistogramImageFilter base classes to ImageFilterBase
>      BUG: Avoid potential exception in itk::Object::UnRegister
>      BUG: Avoid null deference in PrintSelf with default construction
>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>      ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram base
>      COMP: address sign unsigned comparison warning
>      COMP: Address signed unsigned comparison warning
>      COMP: Address unused member variable and methods in anonymous ns
>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>      BUG: Reduce number of targets with MSVC
>
> Davis Vigneault (7):
>      DOC: Minor improvements to segmentation examples.
>      DOC: Expanded Canny Edge Detection Example
>      DOC: Expanded TreeContainer Example
>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>      COMP: Warnings in FFTW Classes when compiling with c++11
>      COMP: Update Git Tag for Subdivision Module
>      COMP: Warnings in FFTW Classes when compiling with c++11
>
> D?enan Zuki? (1):
>      STYLE: better formatting of the "usage" message
>
> Eugene Prilepin (1):
>      BUG: Fix a template name formation in python wrappings
>
> Floris Berendsen (1):
>      STYLE: Improve naming conventions in comments.
>
> Hans Johnson (29):
>      STYLE: Instrument for FixedParameters typedef
>      BUG: Demonstrate DisplacementTransformFailure
>      BUG: FixedParameters should be double precision
>      STYLE: Minor code style issues for MGHIO
>      COMP: Update to version for WikiExamples
>      ENH: Update Sphinx for ITK 4.8.0
>      ENH: Update MGHIO to be shared lib
>      ENH: Provide consistent floating point comparisons
>      BUG: Fix MGHIO to fix write failures
>      PERF: Remove floating point as sentinal value
>      COMP: Const correctness needs to be maintained
>      BUG: Preserve backwards compatibility
>      DOC: Provide consistent naming in comments
>      ENH: Conversion between transform type tolerance
>      STYLE: Prefer initialization to assignment
>      ENH: Missing ITK_OVERRIDE
>      COMP: Need to propagate ITKGDCM
>      COMP: Need to propagate ITKGDCM
>      COMP: Add missing ITK_OVERRIDE
>      STYLE: Minor code style issues for MGHIO
>      COMP: Update to version for WikiExamples
>      ENH: Update Sphinx for ITK 4.8.0
>      ENH: Update MGHIO to be shared lib
>      BUG: Fix MGHIO to fix write failures
>      ENH: C++11 allows for rigorous =delete
>      COMP: Remove unnecessary failing assert test
>      ENH: Ignore internal files for the Clion editor
>      COMP: Fix VNL compilation for wider C++11 support
>      BUG: In configuration test need to mirror code
>
> Hyun Jae Kang (27):
>      BUG: Remove std::cout calls from class
>      BUG: Avoid an unexpected output of static_cast
>      BUG: Update python example codes for ImageRegistration
>      BUG: Retrieve the missed wrap file
>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> header.
>      BUG: Fix HDF5 CMake configuration with VS2015
>      BUG: Fix a compilation issue on ITK4 with FFTW and shared libraries
>      BUG: Fixed older XCode linking error
>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>      BUG: Remove std::cout calls from class
>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> header.
>      BUG: Fixed older XCode linking error
>      ENH: Add automatic KWStyle build and configuration setup
>      COMP: KWStyle shadow, format-nonliteral and autological-compare
> warning.
>      COMP: Fixed the warning messages from itkGPU Module
>      COMP: Fixed a warning message of unused-private-field
>      COMP: Apply latest version of KWStyle
>      COMP: Update KWStyle to fix its additional warning messages
>      COMP: Update KWStyle to fix its additional warning messages
>      COMP: Fix data-conversion warning messages on Windows
>      ENH: Update itkResourceProbe to calculate statistical data
>      COMP: Fix data-conversion warning messages on VS14
>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
>      ENH: Update the Report() function of itkResourceProbesCollectorBase
>      COMP: Fix data-conversion warning message on itkResourceProbe
>      COMP: Fix additional warning messages of KWStyle
>      COMP: Fix data-conversion warning messages
>
> Jon Haitz Legarreta (6):
>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>      BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
>      BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>      ENH: Improve code coverage for
> itkParametricSpaceToImageSpaceMeshFilter
>
> Julien Michel (1):
>      ENH: Support of VectorImage as template parameters for WarpImageFilter
>
> Junjie Bai (2):
>      BUG: ConvertLabelMap with different LabelMapTypes
>      BUG: LabelObject CopyAttribute support different LabelObject type
>
> KWSys Robot (4):
>      KWSys 2015-07-10 (c9336bcf)
>      KWSys 2015-07-30 (f63febb7)
>      KWSys 2015-08-24 (cdaf522c)
>      KWSys 2015-08-28 (dc3fdd7f)
>
> LIBPNG Upstream (2):
>      PNG 2009-04-06 (e68f5a36)
>      PNG 2014-02-05 (3e753eb8)
>
> Laurentiu Nicola (2):
>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>
> Luc Hermitte (8):
>      PERF: itk::Image::GetPixel() performance improvment.
>      PERF: Performance enhancements on VariableLengthVectors 1/...
>      ENH: Dependencies on itkVariableLengthVector.h reduced
>      BUG: Error in VariableLengthVector Unit Tests
>      PERF: Performance enhancements on VLV 2/...
>      PERF: Performances enhancements on VLV 3/...
>      COMP: Fix signed/unsigned warnings
>      BUG: std::copy/fill on empty VLV
>
> Lucas Gandel (4):
>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>      STYLE: Fix KWStyle dashboard errors
>      BUG: Fix external module BUILD_SHARED_LIBS status
>
> Mathieu Malaterre (1):
>      BUG: Name mangle the included expat third party library.
>
> Matthew McCormick (94):
>      ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>      ENH: Bump ITK version to 4.9.0.
>      BUG: Remove std::cout calls from classes.
>      COMP: Remove unused argument in ConditionVariableNoThreads.
>      BUG: Implement UpdateLargestPossibleRegion for ImageToVTKImageFilter.
>      COMP: Add link interface specification for wrapping
> target_link_libraries.
>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>      COMP: Fix MINCTransformIO factory registration.
>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>      COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
>      BUG: Initialize mutex for 32 bit AtomicInt.
>      ENH: Use CastXML binaries when building with x86_64 Linux.
>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>      COMP: Disable the gold linker for static builds on Ubuntu 14.04.
>      ENH: Use Windows binaries for CastXML.
>      ENH: Add better scoping in igenerator.py.
>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>      BUG: LevelSetsv4 used signed char instead of char.
>      ENH: Add better scoping to idx.py.
>      COMP: Define newSize and oldSize in VariableLengthVector.
>      STYLE: Use prefix increment operator in ImageBase.
>      DOC: Correct spelling of Continuous.
>      ENH: Add more progress information to IterativeClosestPoint2.
>      BUG: Build BridgeNumPy with Visual Studio.
>      ENH: Add ITKModuleExternal.cmake
>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>      BUG: Use CastXML binary built in Release.
>      BUG: ContinuousIndex should not be templated over TCoordRep.
>      COMP: Set CMP0054 to new.
>      COMP: Address line length too long for Software Guide.
>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>      BUG: Support Python 3 wrapping module initialization.
>      BUG: Update itkTemplate.py for Python 3.
>      BUG: Update itkExtras.py for Python 3.
>      BUG: Prevent Python callback addition recursion.
>      BUG: Fix test scripts for Python 3.
>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>      ENH: Allow projects to build against an external module.
>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>      ENH: Rename _cable_ to _wrappers_.
>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>      ENH: Bump CMakeLists.txt version to 4.8.1.
>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>      ENH: Bump CastXML version to 2015-30-29.
>      ENH: Bump LLVM / Clang to 3.7.0.
>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>      COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
>      COMP: Use itkSimpleNewMacro in ThreadedIteratorRangePartitionerTest.
>      ENH: Add wrapping support for building modules externally.
>      BUG: Fix KWStyle test paths when building a module externally.
>      ENH: Add Cuberille Remote module.
>      COMP: Remove carriage returns from Cuberille remote.
>      COMP: Remove unused argument in ConditionVariableNoThreads.
>      DOC: Correct spelling of Continuous.
>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>      COMP: Fix KernelTransform SetFixedParameters argument type.
>      STYLE: Use prefix increment operator in ImageBase.
>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>      Revert "COMP: Put vnl_export.h in the list of sources so it gets
> installed."
>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
>      ENH: Marking wrapping CMake configuration variables as advanced.
>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>      COMP: Non-virtual copy attribute members in LabelMap cannot have
> override.
>      COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>      BUG: Improve KWStyle ExternalProject utilization.
>      ENH: Remove old KWStyle build script.
>      COMP: Address VariableLengthVector Doxygen rhs @param not found.
>      ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
>      ENH: Install Python bindings into site-packages.
>      ENH: Improve readability of Python site-packages path detection.
>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
> warning.
>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>      COMP: Improve scoping in CovariantVectorGeometryTest.
>      ENH: Improves names and export of module dependencies.
>      STYLE: Improve namespace bracket style in itkIsConvertible.
>      COMP: Set CMP0054 to new.
>      BUG: Remove unused wrapping files.
>      BUG: Do install install wrapping development files.
>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>      BUG: Remove duplicate inclusion of wrapping submodules.
>      COMP: Do not use C++ style comments for Doxygen cond.
>      BUG: Fix detection of the gold linker.
>      BUG: Update Python package installation locations.
>      ENH: Bump CMakeLists.txt version to 4.8.2.
>      ENH: Change BUILD_EXAMPLES default to OFF.
>      BUG: Use 'from itk import ITKCommon' in module2module test.
>      COMP: Link to VTK Python when built with Kits support.
>      BUG: Install itk_minc2.h header.
>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>
> Michka Popoff (9):
>      ENH: Update to swig 3.0.7
>      ENH: Do not link against specific Python library on OS X
>      COMP: Fix wrapping warnings when building with ITK_WRAP_IMAGE_DIMS=2
>      COMP: Add missing wrapping for TransformBase
>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>      COMP: Disable incompatible modules when using Python 3 wrapping
>      COMP: Move MovingHistogramImageFilterBase wrapping to ImageFilterBase
> module
>      COMP: Disable incompatible modules when using Python 3 wrapping
>      ENH: Allow operations on Indexes and Offsets in Python
>
> Mikhail Isakov (1):
>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
>
> Nick Tustison (5):
>      BUG:  Set a default b-spline epsilon.
>      ENH: Adding testing for closed loop.
>      BUG:  Updating B-spline classes with the same epsilon strategy.
>      PERF:  Switch vnl_vectors for fixed arrays.
>      ENH:  Point-set registration with time-varying B-spline.
>
> Olivier Commowick (3):
>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen system
>      BUG: Correct under/overflows in vnl_math_hypot (taken from pythag
> from V3P)
>      BUG: Switch eigenvalues computation to double
>
> Pablo Hernandez-Cerdan (2):
>      ENH: Help class for itkFlatStructuringElement with constructor from
> images.
>      COMP: Fix test errors and warnings in FlatStructuringElement.
>
> Seun Odutola (1):
>      COMP: Fixed name clash with Apple header (check Macro), renamed check
> to Check
>
> Shawn Waldon (1):
>      COMP: Set target OS X version in environment for tools using compiler
>
> Simon Alexander (1):
>      BUG: incorrect closest point computation
>
> Tobias Wood (2):
>      BUG: LBFGSB was printing messages even with debug switched off.
>      BUG: Removed an unguarded print statement.
>
> Vladimir S. FONOV (9):
>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>      COMP: Changing the order of HDF5 library components
>      COMP: Splitting up IOMINC module into two parts: MINC and Transform
>      STYLE: updated comments to properly reference LIBMINC
>      ENH: Add script to merge upstream MINC as a subtree
>      MINC 2015-07-23 (c033d431)
>      COMP: Update MINC CMake code
>      MINC 2015-08-18 (6d7e3ba8)
>      MINC 2015-09-13 (95cd5374)
>
> Xiaoxiao Liu (1):
>      DOC: update email address for xiaoxiao.
>
> Zach Williamson (10):
>      BUG: Use correct libraries for ImageFusion tests
>      ENH: Consolidate Library Dependencies
>      COMP: Add a missing link to Review module
>      COMP: Use correct linking macro in DCMTK
>      BUG: Use correct libraries for TestKernel tests
>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>      ENH: Use new linking system macros
>      PERF: Avoid searching private dependencies for include directories
>      COMP: Recover missing dependencies
>      ENH: use new linking macros in Filtering module
>
>
>
> -----------------------------------------------------
> Errors or omissions? Please fix them here:
>
>
> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
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From matt.mccormick at kitware.com  Wed Nov 25 10:47:54 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 25 Nov 2015 10:47:54 -0500
Subject: [ITK-dev] [ITK] clang throws a lot of -Wunknown-attributes
	warning.
In-Reply-To: <CANNqv9dKMUwETQFsVW1kE72J7vfFi=0KAuhdN7T5KX_eXtraew@mail.gmail.com>
References: <CANNqv9dKMUwETQFsVW1kE72J7vfFi=0KAuhdN7T5KX_eXtraew@mail.gmail.com>
Message-ID: <CALzTN-SnLVa1dB1voe0fnjCP3p0FzdeBsyBLVe2HTQj0E+PDBw@mail.gmail.com>

Hi Rashad,

Thanks for discussing issue.

I have been using that compiler and have not come across those warnings.
Are there any non-default flags or CMake options being used?

Could you please submit an Experimental build to the dashboard? ('ctest -D
Experimental' from a clean build tree)

Thanks,
Matt

On Tue, Nov 24, 2015 at 10:39 AM, Rashad Kanavath <
mohammedrashadkm at gmail.com> wrote:

> Hello all,
>
> I am getting a lot of warnings when using itk with clang compiler.
>
> clang version: 3.5.0
> Fedora Linux 22 x86_64
> ITK trunk
>
> In file included from
> /home/otbtesting/sources/orfeo/trunk/OTB-Nightly/Modules/Core/SpatialObjects/include/otbLineSpatialObjectList.h:23:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkLineSpatialObject.h:23:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkPointBasedSpatialObject.h:21:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkSpatialObject.h:23:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineGeometryFrame.h:23:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkScalableAffineTransform.h:21:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineTransform.h:21:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkMatrixOffsetTransformBase.h:24:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkTransform.h:25:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.h:1348:
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.hxx:312:3:
> warning: unknown attribute 'error' ignored [-Wunknown-attributes]
>   itkStaticAssert(
>   ^
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkStaticAssert.h:40:35:
> note: expanded from macro 'itkStaticAssert'
>       ({extern int __attribute__((error(str))) StaticAssertFailure(); \
>                                   ^
> 3 warnings generated.
>
> --
> Regards,
>    Rashad
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
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From matt.mccormick at kitware.com  Wed Nov 25 10:51:36 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 25 Nov 2015 10:51:36 -0500
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
	ready for testing!
In-Reply-To: <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
Message-ID: <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>

Hi Simon,

Thanks for testing.

We have a Visual Studio 2015 build on the dashboard that is green:

  https://open.cdash.org/buildSummary.php?buildid=4117955

Are there any different flags? Could you please submit an Experimental build?

  ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit -C Release

from a fresh build tree.

Thanks,
Matt

On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <skalexander at gmail.com> wrote:
> Looks like a few problems with x64 build on visual studio 2015 - do you have
> a test machine in this configuration?
>
> On Mon, 23 Nov 2015 at 17:53 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> On behalf of the Insight Toolkit community, we are proud to announce that
>> ITK 4.9 release candidate 1 has been tagged and is available for testing!
>>
>> Please take this opportunity to test the new features in the release
>> candidate.
>>
>>
>> To obtain the source code,
>>
>>   git clone http://itk.org/ITK.git
>>  cd ITK
>>  git checkout -q --detach v4.9rc01
>>
>> For more details, please see the Git documentation [1].
>>
>>
>> A few selected highlights for this release:
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * New Remote modules: the Cuberille module for smooth generation of meshes
>> from binary segmentation images, and the AnisotropicDiffusionLBR module
>> improved edge-preserving smoothing.
>> * Build your own ITK module outside the source tree, add continuous
>> integration testing on GitHub, and easily add Python wrapping for your C++
>> algorithms.
>> * Python wrapping, including Python 3, builds faster with a more standard
>> installation
>> * Improved performance of itk::Image::GetPixel and operations on
>> itk::VariableLengthVector?s
>> * Generate a FlatStructuringElement from an image
>> * Point-set registration with time-varying B-splines
>> * Module dependencies can now be specified as public / private / compile /
>> test
>>
>>
>> Please test the release candidate and share your experiences on the
>> mailing list, issue tracker, and Gerrit Code Review. The new module
>> dependency specification mechanism may unearth missing dependencies for
>> projects that use ITK COMPONENTS with the CMake find_package command.
>>
>>
>> An Experimental build, which demonstrates how the test suite performs on
>> your local build system, can be submitted to the dashboard [2] with:
>>
>>   mkdir ../ITK-build
>>   cd ../ITK-build
>>   cmake ../ITK
>>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>>
>> Visual Studio builds must also add ?-C Release? to the ctest command.
>>
>> Notify the mailing list if there are any unexpected failures.  Testing
>> your own applications against the RC is also appreciated.
>>
>>
>> Congratulations and well done to the 35 contributors to this release. We
>> would especially like to recognize the new contributors: Mikhail Isakov,
>> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun Odutola,
>> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson, Luc
>> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>
>>
>> The final release is scheduled for mid-December.
>>
>>
>> [1] http://www.itk.org/Wiki/ITK/Git
>>
>> [2] http://open.cdash.org/index.php?project=Insight
>>
>>
>>
>> New Features
>> ---------------------
>>
>> Wrapping improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Python 3 supported
>> * Wrapping builds much faster due to CastXML binaries
>> * LandmarkBasedTransformInitializer now wrapped
>> * NumPy bridge with VisualStudio
>> * Wrapping for the MinimalPathExtraction module
>> * Wrapping is now installed into Python?s site-packages directory in the
>> ?itk? package
>> * Wrapping package size is decreased
>> * Better package portability on Mac OSX
>>
>>
>> New Remote Modules
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Cuberille
>>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>> * AnisotropicDiffusionLBR
>>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>    * Web browser reproducibility:
>> http://www.kitware.com/blog/home/post/942
>>
>>
>> Core Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * External Modules can now be developed outside of the ITK source tree and
>> on GitHub
>>    * Details: http://www.kitware.com/blog/home/post/997
>> * New utilities in itk::Math:
>>    * AlmostEquals
>>    * NotAlmostEquals
>>    * ExactlyEquals
>>    * NotExactlyEquals
>> * New itk::NumericTraits
>>    * IsInteger
>>    * IsSigned
>> * Improved C++11 support
>>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>> * Improved capabilities of itk::ResourceProbe and
>> itk::ResourceProbesCollectorBase
>> * Improve numerical stability in VNL eigen system estimation
>> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>
>>
>> Filtering Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Generate a FlatStructuringElement from an image
>> * WarpImageFilter support VectorImage?s
>> * ConvertLabelMap supports different LabelMap types
>> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase module
>>
>>
>> Registration Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Point-set registration with time-varying B-splines
>>
>>
>> Build Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Module dependencies can now be specified as public / private / compile /
>> test
>> * BUILD_EXAMPLES CMake option is now OFF by default
>> * Option to export all library symbols on Windows:
>>    * Details: http://www.kitware.com/blog/home/post/939
>> * Expat third party library is now name mangled
>> * Many more modules can be built as shared libraries
>> * KWStyle is automatically built and configured when tests are built
>>
>>
>> Performance Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
>> metaprogramming
>>    * itk::mpl::{TrueType,FalseType}
>>    * itk::mpl::{If,Not,And,Or,Xor}
>>    * itk::mpl::EnableIf
>>    * itk::mpl::IsBaseOf
>>    * itk::mpl::IsConvertible
>>    * itk::mpl::IsNumber
>>    * itk::mpl::IsSame
>>    * itk::mpl::PromoteType
>> * Image::GetPixel performance improvements
>> * Many itk::VariableLengthVector performance improvements
>> * AdaptiveHistogramEqualization uses a moving histogram
>> * WarpImageFilter performance improvements
>>
>>
>> Documentation Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>> * ITK Software Guide improvements
>>    * How to use Python wrapping
>>    * How to create an ITK module
>>    * Improvements to segmentation examples
>>    * Expanded Canny edge detection example
>>    * Expanded tree container example
>>
>>
>> Third Party Library Updates
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * FFTW updated to latest upstream
>> * Build with recent OpenCV 2 and 3
>> * Build with the latest VTK
>> * PNG update to the latest upstream
>> * GDCM updated to the latest upstream
>> * KWSys updated to the latest upstream
>> * MINC updated to the latest upstream
>> * SWIG updated to the latest upstream
>> * Third party PNG and MINC are now Git subtrees
>>
>>
>> Style improvements -- ITK gets more stylish with every release!
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>
>>
>> Improved code coverage -- we are at 84.9%!
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>>
>> * *Lots* of important bug fixes
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>>
>> * And much more! See details in the log below.
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>>
>>
>> Changes from v4.8.0..v4.9rc01
>> --------------------------------------------
>>
>>
>> Abhishek Tiwari (1):
>>      BUG: "tmpImageIndex" not initialized to 0.
>>
>> Adam Snyder (1):
>>      PERF: Reworked MMI Threading using a per-thread buffer
>>
>> Alexander Leinoff (6):
>>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to itkMath.h
>>      COMP: Removes floating-point equality checks
>>      ENH: COMP: Adds support for complex values to Math::AlmostEquals
>>      ENH: Updates fftw dependency
>>
>> Arnaud Gelas (5):
>>      COMP: fix warning (unused local typedef)
>>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>      DOC: add doxgen documentation for BinaryImageToLevelSetImageAdaptor
>>      ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
>>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>
>> Betsy McPhail (1):
>>      BUG: Improve buffer alignment in OctreeNode .
>>
>> Bill Hoffman (2):
>>      ENH: Use new CMake Windows export symbol dll feature.
>>      COMP: Put vnl_export.h in the list of sources so it gets installed.
>>
>> Bill Lorensen (4):
>>      COMP: VTkGlue linker errors
>>      BUG: Inappropriate use of AlmostEquals
>>      ENH: Bump tag for wiki examples
>>      ENH: Better layout strategy
>>
>> Brad King (3):
>>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>      ENH: Update CMake Policy settings in Testing/TestExternal project
>>
>> Bradley Lowekamp (31):
>>      BUG: Avoid null deference in PrintSelf with default construction
>>      ENH: Enable base classes for templates of landmark initializer
>>      STYLE: Use "Swap" for ITK member name
>>      BUG: Demonstrate Eigen analysis failure
>>      BUG: Fix computation of Eigen analysis
>>      ENH: Update DiscreteHessianGaussian Test baseline
>>      ENH: Correctly demonstrate float point Eigen failure
>>      ENH: compile vnl_math_hypot, and use at least double
>>      ENH: Adding initial update script from used libpng version.
>>      ENH: removing non-subtree files for itkpng
>>      ENH: Ported ITK changes for building to subtree merged code
>>      ENH: Update libpng update script for v1.6.9
>>      BUG: Use ParameterValueType for computation of landmark affine
>>      ENH: Wrap LandmarkBasedTransformInitializer
>>      BUG: Avoid potential exception in itk::Object::UnRegister
>>      ENH: Update itkpng zlib, configuration, and rename
>>      ENH: Update itkpng name mangling
>>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>>      BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
>>      BUG: Demonstrate side effect on registration due to BSplineScatter
>> change
>>      ENH: Move MovingHistogramImageFilter base classes to ImageFilterBase
>>      BUG: Avoid potential exception in itk::Object::UnRegister
>>      BUG: Avoid null deference in PrintSelf with default construction
>>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>>      ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram base
>>      COMP: address sign unsigned comparison warning
>>      COMP: Address signed unsigned comparison warning
>>      COMP: Address unused member variable and methods in anonymous ns
>>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
>>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>>      BUG: Reduce number of targets with MSVC
>>
>> Davis Vigneault (7):
>>      DOC: Minor improvements to segmentation examples.
>>      DOC: Expanded Canny Edge Detection Example
>>      DOC: Expanded TreeContainer Example
>>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>      COMP: Warnings in FFTW Classes when compiling with c++11
>>      COMP: Update Git Tag for Subdivision Module
>>      COMP: Warnings in FFTW Classes when compiling with c++11
>>
>> D?enan Zuki? (1):
>>      STYLE: better formatting of the "usage" message
>>
>> Eugene Prilepin (1):
>>      BUG: Fix a template name formation in python wrappings
>>
>> Floris Berendsen (1):
>>      STYLE: Improve naming conventions in comments.
>>
>> Hans Johnson (29):
>>      STYLE: Instrument for FixedParameters typedef
>>      BUG: Demonstrate DisplacementTransformFailure
>>      BUG: FixedParameters should be double precision
>>      STYLE: Minor code style issues for MGHIO
>>      COMP: Update to version for WikiExamples
>>      ENH: Update Sphinx for ITK 4.8.0
>>      ENH: Update MGHIO to be shared lib
>>      ENH: Provide consistent floating point comparisons
>>      BUG: Fix MGHIO to fix write failures
>>      PERF: Remove floating point as sentinal value
>>      COMP: Const correctness needs to be maintained
>>      BUG: Preserve backwards compatibility
>>      DOC: Provide consistent naming in comments
>>      ENH: Conversion between transform type tolerance
>>      STYLE: Prefer initialization to assignment
>>      ENH: Missing ITK_OVERRIDE
>>      COMP: Need to propagate ITKGDCM
>>      COMP: Need to propagate ITKGDCM
>>      COMP: Add missing ITK_OVERRIDE
>>      STYLE: Minor code style issues for MGHIO
>>      COMP: Update to version for WikiExamples
>>      ENH: Update Sphinx for ITK 4.8.0
>>      ENH: Update MGHIO to be shared lib
>>      BUG: Fix MGHIO to fix write failures
>>      ENH: C++11 allows for rigorous =delete
>>      COMP: Remove unnecessary failing assert test
>>      ENH: Ignore internal files for the Clion editor
>>      COMP: Fix VNL compilation for wider C++11 support
>>      BUG: In configuration test need to mirror code
>>
>> Hyun Jae Kang (27):
>>      BUG: Remove std::cout calls from class
>>      BUG: Avoid an unexpected output of static_cast
>>      BUG: Update python example codes for ImageRegistration
>>      BUG: Retrieve the missed wrap file
>>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> header.
>>      BUG: Fix HDF5 CMake configuration with VS2015
>>      BUG: Fix a compilation issue on ITK4 with FFTW and shared libraries
>>      BUG: Fixed older XCode linking error
>>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>      BUG: Remove std::cout calls from class
>>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> header.
>>      BUG: Fixed older XCode linking error
>>      ENH: Add automatic KWStyle build and configuration setup
>>      COMP: KWStyle shadow, format-nonliteral and autological-compare
>> warning.
>>      COMP: Fixed the warning messages from itkGPU Module
>>      COMP: Fixed a warning message of unused-private-field
>>      COMP: Apply latest version of KWStyle
>>      COMP: Update KWStyle to fix its additional warning messages
>>      COMP: Update KWStyle to fix its additional warning messages
>>      COMP: Fix data-conversion warning messages on Windows
>>      ENH: Update itkResourceProbe to calculate statistical data
>>      COMP: Fix data-conversion warning messages on VS14
>>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
>>      ENH: Update the Report() function of itkResourceProbesCollectorBase
>>      COMP: Fix data-conversion warning message on itkResourceProbe
>>      COMP: Fix additional warning messages of KWStyle
>>      COMP: Fix data-conversion warning messages
>>
>> Jon Haitz Legarreta (6):
>>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>      BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
>>      BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
>>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>      ENH: Improve code coverage for
>> itkParametricSpaceToImageSpaceMeshFilter
>>
>> Julien Michel (1):
>>      ENH: Support of VectorImage as template parameters for
>> WarpImageFilter
>>
>> Junjie Bai (2):
>>      BUG: ConvertLabelMap with different LabelMapTypes
>>      BUG: LabelObject CopyAttribute support different LabelObject type
>>
>> KWSys Robot (4):
>>      KWSys 2015-07-10 (c9336bcf)
>>      KWSys 2015-07-30 (f63febb7)
>>      KWSys 2015-08-24 (cdaf522c)
>>      KWSys 2015-08-28 (dc3fdd7f)
>>
>> LIBPNG Upstream (2):
>>      PNG 2009-04-06 (e68f5a36)
>>      PNG 2014-02-05 (3e753eb8)
>>
>> Laurentiu Nicola (2):
>>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>
>> Luc Hermitte (8):
>>      PERF: itk::Image::GetPixel() performance improvment.
>>      PERF: Performance enhancements on VariableLengthVectors 1/...
>>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>      BUG: Error in VariableLengthVector Unit Tests
>>      PERF: Performance enhancements on VLV 2/...
>>      PERF: Performances enhancements on VLV 3/...
>>      COMP: Fix signed/unsigned warnings
>>      BUG: std::copy/fill on empty VLV
>>
>> Lucas Gandel (4):
>>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>>      STYLE: Fix KWStyle dashboard errors
>>      BUG: Fix external module BUILD_SHARED_LIBS status
>>
>> Mathieu Malaterre (1):
>>      BUG: Name mangle the included expat third party library.
>>
>> Matthew McCormick (94):
>>      ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
>>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>      ENH: Bump ITK version to 4.9.0.
>>      BUG: Remove std::cout calls from classes.
>>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>      BUG: Implement UpdateLargestPossibleRegion for ImageToVTKImageFilter.
>>      COMP: Add link interface specification for wrapping
>> target_link_libraries.
>>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>      COMP: Fix MINCTransformIO factory registration.
>>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>      COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
>>      BUG: Initialize mutex for 32 bit AtomicInt.
>>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>      COMP: Disable the gold linker for static builds on Ubuntu 14.04.
>>      ENH: Use Windows binaries for CastXML.
>>      ENH: Add better scoping in igenerator.py.
>>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>      BUG: LevelSetsv4 used signed char instead of char.
>>      ENH: Add better scoping to idx.py.
>>      COMP: Define newSize and oldSize in VariableLengthVector.
>>      STYLE: Use prefix increment operator in ImageBase.
>>      DOC: Correct spelling of Continuous.
>>      ENH: Add more progress information to IterativeClosestPoint2.
>>      BUG: Build BridgeNumPy with Visual Studio.
>>      ENH: Add ITKModuleExternal.cmake
>>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>      BUG: Use CastXML binary built in Release.
>>      BUG: ContinuousIndex should not be templated over TCoordRep.
>>      COMP: Set CMP0054 to new.
>>      COMP: Address line length too long for Software Guide.
>>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>      BUG: Support Python 3 wrapping module initialization.
>>      BUG: Update itkTemplate.py for Python 3.
>>      BUG: Update itkExtras.py for Python 3.
>>      BUG: Prevent Python callback addition recursion.
>>      BUG: Fix test scripts for Python 3.
>>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>      ENH: Allow projects to build against an external module.
>>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>      ENH: Rename _cable_ to _wrappers_.
>>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>      ENH: Bump CastXML version to 2015-30-29.
>>      ENH: Bump LLVM / Clang to 3.7.0.
>>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>      COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
>>      COMP: Use itkSimpleNewMacro in ThreadedIteratorRangePartitionerTest.
>>      ENH: Add wrapping support for building modules externally.
>>      BUG: Fix KWStyle test paths when building a module externally.
>>      ENH: Add Cuberille Remote module.
>>      COMP: Remove carriage returns from Cuberille remote.
>>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>      DOC: Correct spelling of Continuous.
>>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>      STYLE: Use prefix increment operator in ImageBase.
>>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>      Revert "COMP: Put vnl_export.h in the list of sources so it gets
>> installed."
>>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
>>      ENH: Marking wrapping CMake configuration variables as advanced.
>>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>      COMP: Non-virtual copy attribute members in LabelMap cannot have
>> override.
>>      COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
>>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>      BUG: Improve KWStyle ExternalProject utilization.
>>      ENH: Remove old KWStyle build script.
>>      COMP: Address VariableLengthVector Doxygen rhs @param not found.
>>      ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
>>      ENH: Install Python bindings into site-packages.
>>      ENH: Improve readability of Python site-packages path detection.
>>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
>> warning.
>>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>      ENH: Improves names and export of module dependencies.
>>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>      COMP: Set CMP0054 to new.
>>      BUG: Remove unused wrapping files.
>>      BUG: Do install install wrapping development files.
>>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>      BUG: Remove duplicate inclusion of wrapping submodules.
>>      COMP: Do not use C++ style comments for Doxygen cond.
>>      BUG: Fix detection of the gold linker.
>>      BUG: Update Python package installation locations.
>>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>      ENH: Change BUILD_EXAMPLES default to OFF.
>>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>      COMP: Link to VTK Python when built with Kits support.
>>      BUG: Install itk_minc2.h header.
>>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>
>> Michka Popoff (9):
>>      ENH: Update to swig 3.0.7
>>      ENH: Do not link against specific Python library on OS X
>>      COMP: Fix wrapping warnings when building with ITK_WRAP_IMAGE_DIMS=2
>>      COMP: Add missing wrapping for TransformBase
>>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>      COMP: Disable incompatible modules when using Python 3 wrapping
>>      COMP: Move MovingHistogramImageFilterBase wrapping to ImageFilterBase
>> module
>>      COMP: Disable incompatible modules when using Python 3 wrapping
>>      ENH: Allow operations on Indexes and Offsets in Python
>>
>> Mikhail Isakov (1):
>>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
>>
>> Nick Tustison (5):
>>      BUG:  Set a default b-spline epsilon.
>>      ENH: Adding testing for closed loop.
>>      BUG:  Updating B-spline classes with the same epsilon strategy.
>>      PERF:  Switch vnl_vectors for fixed arrays.
>>      ENH:  Point-set registration with time-varying B-spline.
>>
>> Olivier Commowick (3):
>>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
>> system
>>      BUG: Correct under/overflows in vnl_math_hypot (taken from pythag
>> from V3P)
>>      BUG: Switch eigenvalues computation to double
>>
>> Pablo Hernandez-Cerdan (2):
>>      ENH: Help class for itkFlatStructuringElement with constructor from
>> images.
>>      COMP: Fix test errors and warnings in FlatStructuringElement.
>>
>> Seun Odutola (1):
>>      COMP: Fixed name clash with Apple header (check Macro), renamed check
>> to Check
>>
>> Shawn Waldon (1):
>>      COMP: Set target OS X version in environment for tools using compiler
>>
>> Simon Alexander (1):
>>      BUG: incorrect closest point computation
>>
>> Tobias Wood (2):
>>      BUG: LBFGSB was printing messages even with debug switched off.
>>      BUG: Removed an unguarded print statement.
>>
>> Vladimir S. FONOV (9):
>>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>      COMP: Changing the order of HDF5 library components
>>      COMP: Splitting up IOMINC module into two parts: MINC and Transform
>>      STYLE: updated comments to properly reference LIBMINC
>>      ENH: Add script to merge upstream MINC as a subtree
>>      MINC 2015-07-23 (c033d431)
>>      COMP: Update MINC CMake code
>>      MINC 2015-08-18 (6d7e3ba8)
>>      MINC 2015-09-13 (95cd5374)
>>
>> Xiaoxiao Liu (1):
>>      DOC: update email address for xiaoxiao.
>>
>> Zach Williamson (10):
>>      BUG: Use correct libraries for ImageFusion tests
>>      ENH: Consolidate Library Dependencies
>>      COMP: Add a missing link to Review module
>>      COMP: Use correct linking macro in DCMTK
>>      BUG: Use correct libraries for TestKernel tests
>>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>>      ENH: Use new linking system macros
>>      PERF: Avoid searching private dependencies for include directories
>>      COMP: Recover missing dependencies
>>      ENH: use new linking macros in Filtering module
>>
>>
>>
>> -----------------------------------------------------
>> Errors or omissions? Please fix them here:
>>
>>
>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-users

From skalexander at gmail.com  Wed Nov 25 10:55:10 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 15:55:10 +0000
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
	ready for testing!
In-Reply-To: <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
Message-ID: <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>

Sorry, if I wasn't clear - I submitted two builds yesterday from SIMON-LAP,
(actually 3 as I wasn't sure the config was right on the first one).
VS2013 was green, three failures on VS2015  (and 18 warnings).  Looks like
a truncation problem on the resuts.

On Wed, 25 Nov 2015 at 10:51 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Simon,
>
> Thanks for testing.
>
> We have a Visual Studio 2015 build on the dashboard that is green:
>
>   https://open.cdash.org/buildSummary.php?buildid=4117955
>
> Are there any different flags? Could you please submit an Experimental
> build?
>
>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit -C
> Release
>
> from a fresh build tree.
>
> Thanks,
> Matt
>
> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > Looks like a few problems with x64 build on visual studio 2015 - do you
> have
> > a test machine in this configuration?
> >
> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> On behalf of the Insight Toolkit community, we are proud to announce
> that
> >> ITK 4.9 release candidate 1 has been tagged and is available for
> testing!
> >>
> >> Please take this opportunity to test the new features in the release
> >> candidate.
> >>
> >>
> >> To obtain the source code,
> >>
> >>   git clone http://itk.org/ITK.git
> >>  cd ITK
> >>  git checkout -q --detach v4.9rc01
> >>
> >> For more details, please see the Git documentation [1].
> >>
> >>
> >> A few selected highlights for this release:
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * New Remote modules: the Cuberille module for smooth generation of
> meshes
> >> from binary segmentation images, and the AnisotropicDiffusionLBR module
> >> improved edge-preserving smoothing.
> >> * Build your own ITK module outside the source tree, add continuous
> >> integration testing on GitHub, and easily add Python wrapping for your
> C++
> >> algorithms.
> >> * Python wrapping, including Python 3, builds faster with a more
> standard
> >> installation
> >> * Improved performance of itk::Image::GetPixel and operations on
> >> itk::VariableLengthVector?s
> >> * Generate a FlatStructuringElement from an image
> >> * Point-set registration with time-varying B-splines
> >> * Module dependencies can now be specified as public / private /
> compile /
> >> test
> >>
> >>
> >> Please test the release candidate and share your experiences on the
> >> mailing list, issue tracker, and Gerrit Code Review. The new module
> >> dependency specification mechanism may unearth missing dependencies for
> >> projects that use ITK COMPONENTS with the CMake find_package command.
> >>
> >>
> >> An Experimental build, which demonstrates how the test suite performs on
> >> your local build system, can be submitted to the dashboard [2] with:
> >>
> >>   mkdir ../ITK-build
> >>   cd ../ITK-build
> >>   cmake ../ITK
> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
> >>
> >> Visual Studio builds must also add ?-C Release? to the ctest command.
> >>
> >> Notify the mailing list if there are any unexpected failures.  Testing
> >> your own applications against the RC is also appreciated.
> >>
> >>
> >> Congratulations and well done to the 35 contributors to this release. We
> >> would especially like to recognize the new contributors: Mikhail Isakov,
> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
> Odutola,
> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson, Luc
> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
> >>
> >>
> >> The final release is scheduled for mid-December.
> >>
> >>
> >> [1] http://www.itk.org/Wiki/ITK/Git
> >>
> >> [2] http://open.cdash.org/index.php?project=Insight
> >>
> >>
> >>
> >> New Features
> >> ---------------------
> >>
> >> Wrapping improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Python 3 supported
> >> * Wrapping builds much faster due to CastXML binaries
> >> * LandmarkBasedTransformInitializer now wrapped
> >> * NumPy bridge with VisualStudio
> >> * Wrapping for the MinimalPathExtraction module
> >> * Wrapping is now installed into Python?s site-packages directory in the
> >> ?itk? package
> >> * Wrapping package size is decreased
> >> * Better package portability on Mac OSX
> >>
> >>
> >> New Remote Modules
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Cuberille
> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
> >> * AnisotropicDiffusionLBR
> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
> >>    * Web browser reproducibility:
> >> http://www.kitware.com/blog/home/post/942
> >>
> >>
> >> Core Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * External Modules can now be developed outside of the ITK source tree
> and
> >> on GitHub
> >>    * Details: http://www.kitware.com/blog/home/post/997
> >> * New utilities in itk::Math:
> >>    * AlmostEquals
> >>    * NotAlmostEquals
> >>    * ExactlyEquals
> >>    * NotExactlyEquals
> >> * New itk::NumericTraits
> >>    * IsInteger
> >>    * IsSigned
> >> * Improved C++11 support
> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
> >> * Improved capabilities of itk::ResourceProbe and
> >> itk::ResourceProbesCollectorBase
> >> * Improve numerical stability in VNL eigen system estimation
> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
> >>
> >>
> >> Filtering Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Generate a FlatStructuringElement from an image
> >> * WarpImageFilter support VectorImage?s
> >> * ConvertLabelMap supports different LabelMap types
> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase module
> >>
> >>
> >> Registration Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Point-set registration with time-varying B-splines
> >>
> >>
> >> Build Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Module dependencies can now be specified as public / private /
> compile /
> >> test
> >> * BUILD_EXAMPLES CMake option is now OFF by default
> >> * Option to export all library symbols on Windows:
> >>    * Details: http://www.kitware.com/blog/home/post/939
> >> * Expat third party library is now name mangled
> >> * Many more modules can be built as shared libraries
> >> * KWStyle is automatically built and configured when tests are built
> >>
> >>
> >> Performance Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
> >> metaprogramming
> >>    * itk::mpl::{TrueType,FalseType}
> >>    * itk::mpl::{If,Not,And,Or,Xor}
> >>    * itk::mpl::EnableIf
> >>    * itk::mpl::IsBaseOf
> >>    * itk::mpl::IsConvertible
> >>    * itk::mpl::IsNumber
> >>    * itk::mpl::IsSame
> >>    * itk::mpl::PromoteType
> >> * Image::GetPixel performance improvements
> >> * Many itk::VariableLengthVector performance improvements
> >> * AdaptiveHistogramEqualization uses a moving histogram
> >> * WarpImageFilter performance improvements
> >>
> >>
> >> Documentation Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
> >> * ITK Software Guide improvements
> >>    * How to use Python wrapping
> >>    * How to create an ITK module
> >>    * Improvements to segmentation examples
> >>    * Expanded Canny edge detection example
> >>    * Expanded tree container example
> >>
> >>
> >> Third Party Library Updates
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * FFTW updated to latest upstream
> >> * Build with recent OpenCV 2 and 3
> >> * Build with the latest VTK
> >> * PNG update to the latest upstream
> >> * GDCM updated to the latest upstream
> >> * KWSys updated to the latest upstream
> >> * MINC updated to the latest upstream
> >> * SWIG updated to the latest upstream
> >> * Third party PNG and MINC are now Git subtrees
> >>
> >>
> >> Style improvements -- ITK gets more stylish with every release!
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
> >>
> >>
> >> Improved code coverage -- we are at 84.9%!
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >>
> >> * *Lots* of important bug fixes
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >>
> >> * And much more! See details in the log below.
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >>
> >>
> >> Changes from v4.8.0..v4.9rc01
> >> --------------------------------------------
> >>
> >>
> >> Abhishek Tiwari (1):
> >>      BUG: "tmpImageIndex" not initialized to 0.
> >>
> >> Adam Snyder (1):
> >>      PERF: Reworked MMI Threading using a per-thread buffer
> >>
> >> Alexander Leinoff (6):
> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to itkMath.h
> >>      COMP: Removes floating-point equality checks
> >>      ENH: COMP: Adds support for complex values to Math::AlmostEquals
> >>      ENH: Updates fftw dependency
> >>
> >> Arnaud Gelas (5):
> >>      COMP: fix warning (unused local typedef)
> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
> >>      DOC: add doxgen documentation for BinaryImageToLevelSetImageAdaptor
> >>      ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
> >>
> >> Betsy McPhail (1):
> >>      BUG: Improve buffer alignment in OctreeNode .
> >>
> >> Bill Hoffman (2):
> >>      ENH: Use new CMake Windows export symbol dll feature.
> >>      COMP: Put vnl_export.h in the list of sources so it gets installed.
> >>
> >> Bill Lorensen (4):
> >>      COMP: VTkGlue linker errors
> >>      BUG: Inappropriate use of AlmostEquals
> >>      ENH: Bump tag for wiki examples
> >>      ENH: Better layout strategy
> >>
> >> Brad King (3):
> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
> >>      ENH: Update CMake Policy settings in Testing/TestExternal project
> >>
> >> Bradley Lowekamp (31):
> >>      BUG: Avoid null deference in PrintSelf with default construction
> >>      ENH: Enable base classes for templates of landmark initializer
> >>      STYLE: Use "Swap" for ITK member name
> >>      BUG: Demonstrate Eigen analysis failure
> >>      BUG: Fix computation of Eigen analysis
> >>      ENH: Update DiscreteHessianGaussian Test baseline
> >>      ENH: Correctly demonstrate float point Eigen failure
> >>      ENH: compile vnl_math_hypot, and use at least double
> >>      ENH: Adding initial update script from used libpng version.
> >>      ENH: removing non-subtree files for itkpng
> >>      ENH: Ported ITK changes for building to subtree merged code
> >>      ENH: Update libpng update script for v1.6.9
> >>      BUG: Use ParameterValueType for computation of landmark affine
> >>      ENH: Wrap LandmarkBasedTransformInitializer
> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >>      ENH: Update itkpng zlib, configuration, and rename
> >>      ENH: Update itkpng name mangling
> >>      BUG: Use const pointer in Set method for constant ReferenceImage
> ivar
> >>      BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
> >>      BUG: Demonstrate side effect on registration due to BSplineScatter
> >> change
> >>      ENH: Move MovingHistogramImageFilter base classes to
> ImageFilterBase
> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >>      BUG: Avoid null deference in PrintSelf with default construction
> >>      BUG: Use const pointer in Set method for constant ReferenceImage
> ivar
> >>      ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram
> base
> >>      COMP: address sign unsigned comparison warning
> >>      COMP: Address signed unsigned comparison warning
> >>      COMP: Address unused member variable and methods in anonymous ns
> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
> >>      BUG: Reduce number of targets with MSVC
> >>
> >> Davis Vigneault (7):
> >>      DOC: Minor improvements to segmentation examples.
> >>      DOC: Expanded Canny Edge Detection Example
> >>      DOC: Expanded TreeContainer Example
> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >>      COMP: Update Git Tag for Subdivision Module
> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >>
> >> D?enan Zuki? (1):
> >>      STYLE: better formatting of the "usage" message
> >>
> >> Eugene Prilepin (1):
> >>      BUG: Fix a template name formation in python wrappings
> >>
> >> Floris Berendsen (1):
> >>      STYLE: Improve naming conventions in comments.
> >>
> >> Hans Johnson (29):
> >>      STYLE: Instrument for FixedParameters typedef
> >>      BUG: Demonstrate DisplacementTransformFailure
> >>      BUG: FixedParameters should be double precision
> >>      STYLE: Minor code style issues for MGHIO
> >>      COMP: Update to version for WikiExamples
> >>      ENH: Update Sphinx for ITK 4.8.0
> >>      ENH: Update MGHIO to be shared lib
> >>      ENH: Provide consistent floating point comparisons
> >>      BUG: Fix MGHIO to fix write failures
> >>      PERF: Remove floating point as sentinal value
> >>      COMP: Const correctness needs to be maintained
> >>      BUG: Preserve backwards compatibility
> >>      DOC: Provide consistent naming in comments
> >>      ENH: Conversion between transform type tolerance
> >>      STYLE: Prefer initialization to assignment
> >>      ENH: Missing ITK_OVERRIDE
> >>      COMP: Need to propagate ITKGDCM
> >>      COMP: Need to propagate ITKGDCM
> >>      COMP: Add missing ITK_OVERRIDE
> >>      STYLE: Minor code style issues for MGHIO
> >>      COMP: Update to version for WikiExamples
> >>      ENH: Update Sphinx for ITK 4.8.0
> >>      ENH: Update MGHIO to be shared lib
> >>      BUG: Fix MGHIO to fix write failures
> >>      ENH: C++11 allows for rigorous =delete
> >>      COMP: Remove unnecessary failing assert test
> >>      ENH: Ignore internal files for the Clion editor
> >>      COMP: Fix VNL compilation for wider C++11 support
> >>      BUG: In configuration test need to mirror code
> >>
> >> Hyun Jae Kang (27):
> >>      BUG: Remove std::cout calls from class
> >>      BUG: Avoid an unexpected output of static_cast
> >>      BUG: Update python example codes for ImageRegistration
> >>      BUG: Retrieve the missed wrap file
> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> >> header.
> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared libraries
> >>      BUG: Fixed older XCode linking error
> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
> >>      BUG: Remove std::cout calls from class
> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> >> header.
> >>      BUG: Fixed older XCode linking error
> >>      ENH: Add automatic KWStyle build and configuration setup
> >>      COMP: KWStyle shadow, format-nonliteral and autological-compare
> >> warning.
> >>      COMP: Fixed the warning messages from itkGPU Module
> >>      COMP: Fixed a warning message of unused-private-field
> >>      COMP: Apply latest version of KWStyle
> >>      COMP: Update KWStyle to fix its additional warning messages
> >>      COMP: Update KWStyle to fix its additional warning messages
> >>      COMP: Fix data-conversion warning messages on Windows
> >>      ENH: Update itkResourceProbe to calculate statistical data
> >>      COMP: Fix data-conversion warning messages on VS14
> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
> >>      ENH: Update the Report() function of itkResourceProbesCollectorBase
> >>      COMP: Fix data-conversion warning message on itkResourceProbe
> >>      COMP: Fix additional warning messages of KWStyle
> >>      COMP: Fix data-conversion warning messages
> >>
> >> Jon Haitz Legarreta (6):
> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
> >>      BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
> >>      BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
> >>      ENH: Improve code coverage for
> >> itkParametricSpaceToImageSpaceMeshFilter
> >>
> >> Julien Michel (1):
> >>      ENH: Support of VectorImage as template parameters for
> >> WarpImageFilter
> >>
> >> Junjie Bai (2):
> >>      BUG: ConvertLabelMap with different LabelMapTypes
> >>      BUG: LabelObject CopyAttribute support different LabelObject type
> >>
> >> KWSys Robot (4):
> >>      KWSys 2015-07-10 (c9336bcf)
> >>      KWSys 2015-07-30 (f63febb7)
> >>      KWSys 2015-08-24 (cdaf522c)
> >>      KWSys 2015-08-28 (dc3fdd7f)
> >>
> >> LIBPNG Upstream (2):
> >>      PNG 2009-04-06 (e68f5a36)
> >>      PNG 2014-02-05 (3e753eb8)
> >>
> >> Laurentiu Nicola (2):
> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
> >>
> >> Luc Hermitte (8):
> >>      PERF: itk::Image::GetPixel() performance improvment.
> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
> >>      BUG: Error in VariableLengthVector Unit Tests
> >>      PERF: Performance enhancements on VLV 2/...
> >>      PERF: Performances enhancements on VLV 3/...
> >>      COMP: Fix signed/unsigned warnings
> >>      BUG: std::copy/fill on empty VLV
> >>
> >> Lucas Gandel (4):
> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
> >>      STYLE: Fix KWStyle dashboard errors
> >>      BUG: Fix external module BUILD_SHARED_LIBS status
> >>
> >> Mathieu Malaterre (1):
> >>      BUG: Name mangle the included expat third party library.
> >>
> >> Matthew McCormick (94):
> >>      ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
> >>      ENH: Bump ITK version to 4.9.0.
> >>      BUG: Remove std::cout calls from classes.
> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >>      BUG: Implement UpdateLargestPossibleRegion for
> ImageToVTKImageFilter.
> >>      COMP: Add link interface specification for wrapping
> >> target_link_libraries.
> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
> >>      COMP: Fix MINCTransformIO factory registration.
> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
> >>      COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
> >>      BUG: Initialize mutex for 32 bit AtomicInt.
> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
> >>      COMP: Disable the gold linker for static builds on Ubuntu 14.04.
> >>      ENH: Use Windows binaries for CastXML.
> >>      ENH: Add better scoping in igenerator.py.
> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
> >>      BUG: LevelSetsv4 used signed char instead of char.
> >>      ENH: Add better scoping to idx.py.
> >>      COMP: Define newSize and oldSize in VariableLengthVector.
> >>      STYLE: Use prefix increment operator in ImageBase.
> >>      DOC: Correct spelling of Continuous.
> >>      ENH: Add more progress information to IterativeClosestPoint2.
> >>      BUG: Build BridgeNumPy with Visual Studio.
> >>      ENH: Add ITKModuleExternal.cmake
> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
> >>      BUG: Use CastXML binary built in Release.
> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
> >>      COMP: Set CMP0054 to new.
> >>      COMP: Address line length too long for Software Guide.
> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
> >>      BUG: Support Python 3 wrapping module initialization.
> >>      BUG: Update itkTemplate.py for Python 3.
> >>      BUG: Update itkExtras.py for Python 3.
> >>      BUG: Prevent Python callback addition recursion.
> >>      BUG: Fix test scripts for Python 3.
> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
> >>      ENH: Allow projects to build against an external module.
> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
> >>      ENH: Rename _cable_ to _wrappers_.
> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
> >>      ENH: Bump CastXML version to 2015-30-29.
> >>      ENH: Bump LLVM / Clang to 3.7.0.
> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
> >>      COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
> >>      COMP: Use itkSimpleNewMacro in
> ThreadedIteratorRangePartitionerTest.
> >>      ENH: Add wrapping support for building modules externally.
> >>      BUG: Fix KWStyle test paths when building a module externally.
> >>      ENH: Add Cuberille Remote module.
> >>      COMP: Remove carriage returns from Cuberille remote.
> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >>      DOC: Correct spelling of Continuous.
> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >>      STYLE: Use prefix increment operator in ImageBase.
> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >>      Revert "COMP: Put vnl_export.h in the list of sources so it gets
> >> installed."
> >>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
> >>      ENH: Marking wrapping CMake configuration variables as advanced.
> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
> >>      COMP: Non-virtual copy attribute members in LabelMap cannot have
> >> override.
> >>      COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
> >>      BUG: Improve KWStyle ExternalProject utilization.
> >>      ENH: Remove old KWStyle build script.
> >>      COMP: Address VariableLengthVector Doxygen rhs @param not found.
> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
> >>      ENH: Install Python bindings into site-packages.
> >>      ENH: Improve readability of Python site-packages path detection.
> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
> >> warning.
> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
> >>      ENH: Improves names and export of module dependencies.
> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
> >>      COMP: Set CMP0054 to new.
> >>      BUG: Remove unused wrapping files.
> >>      BUG: Do install install wrapping development files.
> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
> >>      BUG: Remove duplicate inclusion of wrapping submodules.
> >>      COMP: Do not use C++ style comments for Doxygen cond.
> >>      BUG: Fix detection of the gold linker.
> >>      BUG: Update Python package installation locations.
> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
> >>      ENH: Change BUILD_EXAMPLES default to OFF.
> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
> >>      COMP: Link to VTK Python when built with Kits support.
> >>      BUG: Install itk_minc2.h header.
> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
> >>
> >> Michka Popoff (9):
> >>      ENH: Update to swig 3.0.7
> >>      ENH: Do not link against specific Python library on OS X
> >>      COMP: Fix wrapping warnings when building with
> ITK_WRAP_IMAGE_DIMS=2
> >>      COMP: Add missing wrapping for TransformBase
> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
> ImageFilterBase
> >> module
> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >>      ENH: Allow operations on Indexes and Offsets in Python
> >>
> >> Mikhail Isakov (1):
> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
> >>
> >> Nick Tustison (5):
> >>      BUG:  Set a default b-spline epsilon.
> >>      ENH: Adding testing for closed loop.
> >>      BUG:  Updating B-spline classes with the same epsilon strategy.
> >>      PERF:  Switch vnl_vectors for fixed arrays.
> >>      ENH:  Point-set registration with time-varying B-spline.
> >>
> >> Olivier Commowick (3):
> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
> >> system
> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from pythag
> >> from V3P)
> >>      BUG: Switch eigenvalues computation to double
> >>
> >> Pablo Hernandez-Cerdan (2):
> >>      ENH: Help class for itkFlatStructuringElement with constructor from
> >> images.
> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
> >>
> >> Seun Odutola (1):
> >>      COMP: Fixed name clash with Apple header (check Macro), renamed
> check
> >> to Check
> >>
> >> Shawn Waldon (1):
> >>      COMP: Set target OS X version in environment for tools using
> compiler
> >>
> >> Simon Alexander (1):
> >>      BUG: incorrect closest point computation
> >>
> >> Tobias Wood (2):
> >>      BUG: LBFGSB was printing messages even with debug switched off.
> >>      BUG: Removed an unguarded print statement.
> >>
> >> Vladimir S. FONOV (9):
> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
> >>      COMP: Changing the order of HDF5 library components
> >>      COMP: Splitting up IOMINC module into two parts: MINC and Transform
> >>      STYLE: updated comments to properly reference LIBMINC
> >>      ENH: Add script to merge upstream MINC as a subtree
> >>      MINC 2015-07-23 (c033d431)
> >>      COMP: Update MINC CMake code
> >>      MINC 2015-08-18 (6d7e3ba8)
> >>      MINC 2015-09-13 (95cd5374)
> >>
> >> Xiaoxiao Liu (1):
> >>      DOC: update email address for xiaoxiao.
> >>
> >> Zach Williamson (10):
> >>      BUG: Use correct libraries for ImageFusion tests
> >>      ENH: Consolidate Library Dependencies
> >>      COMP: Add a missing link to Review module
> >>      COMP: Use correct linking macro in DCMTK
> >>      BUG: Use correct libraries for TestKernel tests
> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
> >>      ENH: Use new linking system macros
> >>      PERF: Avoid searching private dependencies for include directories
> >>      COMP: Recover missing dependencies
> >>      ENH: use new linking macros in Filtering module
> >>
> >>
> >>
> >> -----------------------------------------------------
> >> Errors or omissions? Please fix them here:
> >>
> >>
> >>
> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
> >> _____________________________________
> >> Powered by www.kitware.com
> >>
> >> Visit other Kitware open-source projects at
> >> http://www.kitware.com/opensource/opensource.html
> >>
> >> Kitware offers ITK Training Courses, for more information visit:
> >> http://www.kitware.com/products/protraining.php
> >>
> >> Please keep messages on-topic and check the ITK FAQ at:
> >> http://www.itk.org/Wiki/ITK_FAQ
> >>
> >> Follow this link to subscribe/unsubscribe:
> >> http://public.kitware.com/mailman/listinfo/insight-users
>
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From matt.mccormick at kitware.com  Wed Nov 25 11:01:32 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 25 Nov 2015 11:01:32 -0500
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
	ready for testing!
In-Reply-To: <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
Message-ID: <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>

Ah, cool!  Here:

 https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158

Could you please look into the test failures?

@Hyun Jae, could you please look into the KWStyle warnings?

Thanks,
Matt


On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <skalexander at gmail.com> wrote:
> Sorry, if I wasn't clear - I submitted two builds yesterday from SIMON-LAP,
> (actually 3 as I wasn't sure the config was right on the first one).  VS2013
> was green, three failures on VS2015  (and 18 warnings).  Looks like a
> truncation problem on the resuts.
>
> On Wed, 25 Nov 2015 at 10:51 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi Simon,
>>
>> Thanks for testing.
>>
>> We have a Visual Studio 2015 build on the dashboard that is green:
>>
>>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>
>> Are there any different flags? Could you please submit an Experimental
>> build?
>>
>>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit -C
>> Release
>>
>> from a fresh build tree.
>>
>> Thanks,
>> Matt
>>
>> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>> > Looks like a few problems with x64 build on visual studio 2015 - do you
>> > have
>> > a test machine in this configuration?
>> >
>> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <matt.mccormick at kitware.com>
>> > wrote:
>> >>
>> >> On behalf of the Insight Toolkit community, we are proud to announce
>> >> that
>> >> ITK 4.9 release candidate 1 has been tagged and is available for
>> >> testing!
>> >>
>> >> Please take this opportunity to test the new features in the release
>> >> candidate.
>> >>
>> >>
>> >> To obtain the source code,
>> >>
>> >>   git clone http://itk.org/ITK.git
>> >>  cd ITK
>> >>  git checkout -q --detach v4.9rc01
>> >>
>> >> For more details, please see the Git documentation [1].
>> >>
>> >>
>> >> A few selected highlights for this release:
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * New Remote modules: the Cuberille module for smooth generation of
>> >> meshes
>> >> from binary segmentation images, and the AnisotropicDiffusionLBR module
>> >> improved edge-preserving smoothing.
>> >> * Build your own ITK module outside the source tree, add continuous
>> >> integration testing on GitHub, and easily add Python wrapping for your
>> >> C++
>> >> algorithms.
>> >> * Python wrapping, including Python 3, builds faster with a more
>> >> standard
>> >> installation
>> >> * Improved performance of itk::Image::GetPixel and operations on
>> >> itk::VariableLengthVector?s
>> >> * Generate a FlatStructuringElement from an image
>> >> * Point-set registration with time-varying B-splines
>> >> * Module dependencies can now be specified as public / private /
>> >> compile /
>> >> test
>> >>
>> >>
>> >> Please test the release candidate and share your experiences on the
>> >> mailing list, issue tracker, and Gerrit Code Review. The new module
>> >> dependency specification mechanism may unearth missing dependencies for
>> >> projects that use ITK COMPONENTS with the CMake find_package command.
>> >>
>> >>
>> >> An Experimental build, which demonstrates how the test suite performs
>> >> on
>> >> your local build system, can be submitted to the dashboard [2] with:
>> >>
>> >>   mkdir ../ITK-build
>> >>   cd ../ITK-build
>> >>   cmake ../ITK
>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>> >>
>> >> Visual Studio builds must also add ?-C Release? to the ctest command.
>> >>
>> >> Notify the mailing list if there are any unexpected failures.  Testing
>> >> your own applications against the RC is also appreciated.
>> >>
>> >>
>> >> Congratulations and well done to the 35 contributors to this release.
>> >> We
>> >> would especially like to recognize the new contributors: Mikhail
>> >> Isakov,
>> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>> >> Odutola,
>> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson,
>> >> Luc
>> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>> >>
>> >>
>> >> The final release is scheduled for mid-December.
>> >>
>> >>
>> >> [1] http://www.itk.org/Wiki/ITK/Git
>> >>
>> >> [2] http://open.cdash.org/index.php?project=Insight
>> >>
>> >>
>> >>
>> >> New Features
>> >> ---------------------
>> >>
>> >> Wrapping improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Python 3 supported
>> >> * Wrapping builds much faster due to CastXML binaries
>> >> * LandmarkBasedTransformInitializer now wrapped
>> >> * NumPy bridge with VisualStudio
>> >> * Wrapping for the MinimalPathExtraction module
>> >> * Wrapping is now installed into Python?s site-packages directory in
>> >> the
>> >> ?itk? package
>> >> * Wrapping package size is decreased
>> >> * Better package portability on Mac OSX
>> >>
>> >>
>> >> New Remote Modules
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Cuberille
>> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>> >> * AnisotropicDiffusionLBR
>> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>> >>    * Web browser reproducibility:
>> >> http://www.kitware.com/blog/home/post/942
>> >>
>> >>
>> >> Core Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * External Modules can now be developed outside of the ITK source tree
>> >> and
>> >> on GitHub
>> >>    * Details: http://www.kitware.com/blog/home/post/997
>> >> * New utilities in itk::Math:
>> >>    * AlmostEquals
>> >>    * NotAlmostEquals
>> >>    * ExactlyEquals
>> >>    * NotExactlyEquals
>> >> * New itk::NumericTraits
>> >>    * IsInteger
>> >>    * IsSigned
>> >> * Improved C++11 support
>> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>> >> * Improved capabilities of itk::ResourceProbe and
>> >> itk::ResourceProbesCollectorBase
>> >> * Improve numerical stability in VNL eigen system estimation
>> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>> >>
>> >>
>> >> Filtering Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Generate a FlatStructuringElement from an image
>> >> * WarpImageFilter support VectorImage?s
>> >> * ConvertLabelMap supports different LabelMap types
>> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>> >> module
>> >>
>> >>
>> >> Registration Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Point-set registration with time-varying B-splines
>> >>
>> >>
>> >> Build Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Module dependencies can now be specified as public / private /
>> >> compile /
>> >> test
>> >> * BUILD_EXAMPLES CMake option is now OFF by default
>> >> * Option to export all library symbols on Windows:
>> >>    * Details: http://www.kitware.com/blog/home/post/939
>> >> * Expat third party library is now name mangled
>> >> * Many more modules can be built as shared libraries
>> >> * KWStyle is automatically built and configured when tests are built
>> >>
>> >>
>> >> Performance Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
>> >> metaprogramming
>> >>    * itk::mpl::{TrueType,FalseType}
>> >>    * itk::mpl::{If,Not,And,Or,Xor}
>> >>    * itk::mpl::EnableIf
>> >>    * itk::mpl::IsBaseOf
>> >>    * itk::mpl::IsConvertible
>> >>    * itk::mpl::IsNumber
>> >>    * itk::mpl::IsSame
>> >>    * itk::mpl::PromoteType
>> >> * Image::GetPixel performance improvements
>> >> * Many itk::VariableLengthVector performance improvements
>> >> * AdaptiveHistogramEqualization uses a moving histogram
>> >> * WarpImageFilter performance improvements
>> >>
>> >>
>> >> Documentation Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>> >> * ITK Software Guide improvements
>> >>    * How to use Python wrapping
>> >>    * How to create an ITK module
>> >>    * Improvements to segmentation examples
>> >>    * Expanded Canny edge detection example
>> >>    * Expanded tree container example
>> >>
>> >>
>> >> Third Party Library Updates
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * FFTW updated to latest upstream
>> >> * Build with recent OpenCV 2 and 3
>> >> * Build with the latest VTK
>> >> * PNG update to the latest upstream
>> >> * GDCM updated to the latest upstream
>> >> * KWSys updated to the latest upstream
>> >> * MINC updated to the latest upstream
>> >> * SWIG updated to the latest upstream
>> >> * Third party PNG and MINC are now Git subtrees
>> >>
>> >>
>> >> Style improvements -- ITK gets more stylish with every release!
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>> >>
>> >>
>> >> Improved code coverage -- we are at 84.9%!
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >>
>> >> * *Lots* of important bug fixes
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >>
>> >> * And much more! See details in the log below.
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >>
>> >>
>> >> Changes from v4.8.0..v4.9rc01
>> >> --------------------------------------------
>> >>
>> >>
>> >> Abhishek Tiwari (1):
>> >>      BUG: "tmpImageIndex" not initialized to 0.
>> >>
>> >> Adam Snyder (1):
>> >>      PERF: Reworked MMI Threading using a per-thread buffer
>> >>
>> >> Alexander Leinoff (6):
>> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>> >> itkMath.h
>> >>      COMP: Removes floating-point equality checks
>> >>      ENH: COMP: Adds support for complex values to Math::AlmostEquals
>> >>      ENH: Updates fftw dependency
>> >>
>> >> Arnaud Gelas (5):
>> >>      COMP: fix warning (unused local typedef)
>> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>> >>      DOC: add doxgen documentation for
>> >> BinaryImageToLevelSetImageAdaptor
>> >>      ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
>> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>> >>
>> >> Betsy McPhail (1):
>> >>      BUG: Improve buffer alignment in OctreeNode .
>> >>
>> >> Bill Hoffman (2):
>> >>      ENH: Use new CMake Windows export symbol dll feature.
>> >>      COMP: Put vnl_export.h in the list of sources so it gets
>> >> installed.
>> >>
>> >> Bill Lorensen (4):
>> >>      COMP: VTkGlue linker errors
>> >>      BUG: Inappropriate use of AlmostEquals
>> >>      ENH: Bump tag for wiki examples
>> >>      ENH: Better layout strategy
>> >>
>> >> Brad King (3):
>> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>> >>      ENH: Update CMake Policy settings in Testing/TestExternal project
>> >>
>> >> Bradley Lowekamp (31):
>> >>      BUG: Avoid null deference in PrintSelf with default construction
>> >>      ENH: Enable base classes for templates of landmark initializer
>> >>      STYLE: Use "Swap" for ITK member name
>> >>      BUG: Demonstrate Eigen analysis failure
>> >>      BUG: Fix computation of Eigen analysis
>> >>      ENH: Update DiscreteHessianGaussian Test baseline
>> >>      ENH: Correctly demonstrate float point Eigen failure
>> >>      ENH: compile vnl_math_hypot, and use at least double
>> >>      ENH: Adding initial update script from used libpng version.
>> >>      ENH: removing non-subtree files for itkpng
>> >>      ENH: Ported ITK changes for building to subtree merged code
>> >>      ENH: Update libpng update script for v1.6.9
>> >>      BUG: Use ParameterValueType for computation of landmark affine
>> >>      ENH: Wrap LandmarkBasedTransformInitializer
>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >>      ENH: Update itkpng zlib, configuration, and rename
>> >>      ENH: Update itkpng name mangling
>> >>      BUG: Use const pointer in Set method for constant ReferenceImage
>> >> ivar
>> >>      BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
>> >>      BUG: Demonstrate side effect on registration due to BSplineScatter
>> >> change
>> >>      ENH: Move MovingHistogramImageFilter base classes to
>> >> ImageFilterBase
>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >>      BUG: Avoid null deference in PrintSelf with default construction
>> >>      BUG: Use const pointer in Set method for constant ReferenceImage
>> >> ivar
>> >>      ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram
>> >> base
>> >>      COMP: address sign unsigned comparison warning
>> >>      COMP: Address signed unsigned comparison warning
>> >>      COMP: Address unused member variable and methods in anonymous ns
>> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>> >> range
>> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>> >>      BUG: Reduce number of targets with MSVC
>> >>
>> >> Davis Vigneault (7):
>> >>      DOC: Minor improvements to segmentation examples.
>> >>      DOC: Expanded Canny Edge Detection Example
>> >>      DOC: Expanded TreeContainer Example
>> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >>      COMP: Update Git Tag for Subdivision Module
>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >>
>> >> D?enan Zuki? (1):
>> >>      STYLE: better formatting of the "usage" message
>> >>
>> >> Eugene Prilepin (1):
>> >>      BUG: Fix a template name formation in python wrappings
>> >>
>> >> Floris Berendsen (1):
>> >>      STYLE: Improve naming conventions in comments.
>> >>
>> >> Hans Johnson (29):
>> >>      STYLE: Instrument for FixedParameters typedef
>> >>      BUG: Demonstrate DisplacementTransformFailure
>> >>      BUG: FixedParameters should be double precision
>> >>      STYLE: Minor code style issues for MGHIO
>> >>      COMP: Update to version for WikiExamples
>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >>      ENH: Update MGHIO to be shared lib
>> >>      ENH: Provide consistent floating point comparisons
>> >>      BUG: Fix MGHIO to fix write failures
>> >>      PERF: Remove floating point as sentinal value
>> >>      COMP: Const correctness needs to be maintained
>> >>      BUG: Preserve backwards compatibility
>> >>      DOC: Provide consistent naming in comments
>> >>      ENH: Conversion between transform type tolerance
>> >>      STYLE: Prefer initialization to assignment
>> >>      ENH: Missing ITK_OVERRIDE
>> >>      COMP: Need to propagate ITKGDCM
>> >>      COMP: Need to propagate ITKGDCM
>> >>      COMP: Add missing ITK_OVERRIDE
>> >>      STYLE: Minor code style issues for MGHIO
>> >>      COMP: Update to version for WikiExamples
>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >>      ENH: Update MGHIO to be shared lib
>> >>      BUG: Fix MGHIO to fix write failures
>> >>      ENH: C++11 allows for rigorous =delete
>> >>      COMP: Remove unnecessary failing assert test
>> >>      ENH: Ignore internal files for the Clion editor
>> >>      COMP: Fix VNL compilation for wider C++11 support
>> >>      BUG: In configuration test need to mirror code
>> >>
>> >> Hyun Jae Kang (27):
>> >>      BUG: Remove std::cout calls from class
>> >>      BUG: Avoid an unexpected output of static_cast
>> >>      BUG: Update python example codes for ImageRegistration
>> >>      BUG: Retrieve the missed wrap file
>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> >> header.
>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>> >> libraries
>> >>      BUG: Fixed older XCode linking error
>> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>> >>      BUG: Remove std::cout calls from class
>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> >> header.
>> >>      BUG: Fixed older XCode linking error
>> >>      ENH: Add automatic KWStyle build and configuration setup
>> >>      COMP: KWStyle shadow, format-nonliteral and autological-compare
>> >> warning.
>> >>      COMP: Fixed the warning messages from itkGPU Module
>> >>      COMP: Fixed a warning message of unused-private-field
>> >>      COMP: Apply latest version of KWStyle
>> >>      COMP: Update KWStyle to fix its additional warning messages
>> >>      COMP: Update KWStyle to fix its additional warning messages
>> >>      COMP: Fix data-conversion warning messages on Windows
>> >>      ENH: Update itkResourceProbe to calculate statistical data
>> >>      COMP: Fix data-conversion warning messages on VS14
>> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
>> >>      ENH: Update the Report() function of
>> >> itkResourceProbesCollectorBase
>> >>      COMP: Fix data-conversion warning message on itkResourceProbe
>> >>      COMP: Fix additional warning messages of KWStyle
>> >>      COMP: Fix data-conversion warning messages
>> >>
>> >> Jon Haitz Legarreta (6):
>> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>> >>      BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
>> >>      BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
>> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>> >>      ENH: Improve code coverage for
>> >> itkParametricSpaceToImageSpaceMeshFilter
>> >>
>> >> Julien Michel (1):
>> >>      ENH: Support of VectorImage as template parameters for
>> >> WarpImageFilter
>> >>
>> >> Junjie Bai (2):
>> >>      BUG: ConvertLabelMap with different LabelMapTypes
>> >>      BUG: LabelObject CopyAttribute support different LabelObject type
>> >>
>> >> KWSys Robot (4):
>> >>      KWSys 2015-07-10 (c9336bcf)
>> >>      KWSys 2015-07-30 (f63febb7)
>> >>      KWSys 2015-08-24 (cdaf522c)
>> >>      KWSys 2015-08-28 (dc3fdd7f)
>> >>
>> >> LIBPNG Upstream (2):
>> >>      PNG 2009-04-06 (e68f5a36)
>> >>      PNG 2014-02-05 (3e753eb8)
>> >>
>> >> Laurentiu Nicola (2):
>> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>> >>
>> >> Luc Hermitte (8):
>> >>      PERF: itk::Image::GetPixel() performance improvment.
>> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
>> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>> >>      BUG: Error in VariableLengthVector Unit Tests
>> >>      PERF: Performance enhancements on VLV 2/...
>> >>      PERF: Performances enhancements on VLV 3/...
>> >>      COMP: Fix signed/unsigned warnings
>> >>      BUG: std::copy/fill on empty VLV
>> >>
>> >> Lucas Gandel (4):
>> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>> >>      STYLE: Fix KWStyle dashboard errors
>> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>> >>
>> >> Mathieu Malaterre (1):
>> >>      BUG: Name mangle the included expat third party library.
>> >>
>> >> Matthew McCormick (94):
>> >>      ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
>> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>> >>      ENH: Bump ITK version to 4.9.0.
>> >>      BUG: Remove std::cout calls from classes.
>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >>      BUG: Implement UpdateLargestPossibleRegion for
>> >> ImageToVTKImageFilter.
>> >>      COMP: Add link interface specification for wrapping
>> >> target_link_libraries.
>> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>> >>      COMP: Fix MINCTransformIO factory registration.
>> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>> >>      COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
>> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>> >>      COMP: Disable the gold linker for static builds on Ubuntu 14.04.
>> >>      ENH: Use Windows binaries for CastXML.
>> >>      ENH: Add better scoping in igenerator.py.
>> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>> >>      BUG: LevelSetsv4 used signed char instead of char.
>> >>      ENH: Add better scoping to idx.py.
>> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >>      DOC: Correct spelling of Continuous.
>> >>      ENH: Add more progress information to IterativeClosestPoint2.
>> >>      BUG: Build BridgeNumPy with Visual Studio.
>> >>      ENH: Add ITKModuleExternal.cmake
>> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>> >>      BUG: Use CastXML binary built in Release.
>> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>> >>      COMP: Set CMP0054 to new.
>> >>      COMP: Address line length too long for Software Guide.
>> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>> >>      BUG: Support Python 3 wrapping module initialization.
>> >>      BUG: Update itkTemplate.py for Python 3.
>> >>      BUG: Update itkExtras.py for Python 3.
>> >>      BUG: Prevent Python callback addition recursion.
>> >>      BUG: Fix test scripts for Python 3.
>> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >>      ENH: Allow projects to build against an external module.
>> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>> >>      ENH: Rename _cable_ to _wrappers_.
>> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>> >>      ENH: Bump CastXML version to 2015-30-29.
>> >>      ENH: Bump LLVM / Clang to 3.7.0.
>> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>> >>      COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
>> >>      COMP: Use itkSimpleNewMacro in
>> >> ThreadedIteratorRangePartitionerTest.
>> >>      ENH: Add wrapping support for building modules externally.
>> >>      BUG: Fix KWStyle test paths when building a module externally.
>> >>      ENH: Add Cuberille Remote module.
>> >>      COMP: Remove carriage returns from Cuberille remote.
>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >>      DOC: Correct spelling of Continuous.
>> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >>      Revert "COMP: Put vnl_export.h in the list of sources so it gets
>> >> installed."
>> >>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
>> >>      ENH: Marking wrapping CMake configuration variables as advanced.
>> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>> >>      COMP: Non-virtual copy attribute members in LabelMap cannot have
>> >> override.
>> >>      COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
>> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>> >>      BUG: Improve KWStyle ExternalProject utilization.
>> >>      ENH: Remove old KWStyle build script.
>> >>      COMP: Address VariableLengthVector Doxygen rhs @param not found.
>> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
>> >>      ENH: Install Python bindings into site-packages.
>> >>      ENH: Improve readability of Python site-packages path detection.
>> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
>> >> warning.
>> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>> >>      ENH: Improves names and export of module dependencies.
>> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>> >>      COMP: Set CMP0054 to new.
>> >>      BUG: Remove unused wrapping files.
>> >>      BUG: Do install install wrapping development files.
>> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>> >>      COMP: Do not use C++ style comments for Doxygen cond.
>> >>      BUG: Fix detection of the gold linker.
>> >>      BUG: Update Python package installation locations.
>> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>> >>      COMP: Link to VTK Python when built with Kits support.
>> >>      BUG: Install itk_minc2.h header.
>> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>> >>
>> >> Michka Popoff (9):
>> >>      ENH: Update to swig 3.0.7
>> >>      ENH: Do not link against specific Python library on OS X
>> >>      COMP: Fix wrapping warnings when building with
>> >> ITK_WRAP_IMAGE_DIMS=2
>> >>      COMP: Add missing wrapping for TransformBase
>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>> >> ImageFilterBase
>> >> module
>> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >>      ENH: Allow operations on Indexes and Offsets in Python
>> >>
>> >> Mikhail Isakov (1):
>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
>> >>
>> >> Nick Tustison (5):
>> >>      BUG:  Set a default b-spline epsilon.
>> >>      ENH: Adding testing for closed loop.
>> >>      BUG:  Updating B-spline classes with the same epsilon strategy.
>> >>      PERF:  Switch vnl_vectors for fixed arrays.
>> >>      ENH:  Point-set registration with time-varying B-spline.
>> >>
>> >> Olivier Commowick (3):
>> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
>> >> system
>> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from pythag
>> >> from V3P)
>> >>      BUG: Switch eigenvalues computation to double
>> >>
>> >> Pablo Hernandez-Cerdan (2):
>> >>      ENH: Help class for itkFlatStructuringElement with constructor
>> >> from
>> >> images.
>> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
>> >>
>> >> Seun Odutola (1):
>> >>      COMP: Fixed name clash with Apple header (check Macro), renamed
>> >> check
>> >> to Check
>> >>
>> >> Shawn Waldon (1):
>> >>      COMP: Set target OS X version in environment for tools using
>> >> compiler
>> >>
>> >> Simon Alexander (1):
>> >>      BUG: incorrect closest point computation
>> >>
>> >> Tobias Wood (2):
>> >>      BUG: LBFGSB was printing messages even with debug switched off.
>> >>      BUG: Removed an unguarded print statement.
>> >>
>> >> Vladimir S. FONOV (9):
>> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>> >>      COMP: Changing the order of HDF5 library components
>> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>> >> Transform
>> >>      STYLE: updated comments to properly reference LIBMINC
>> >>      ENH: Add script to merge upstream MINC as a subtree
>> >>      MINC 2015-07-23 (c033d431)
>> >>      COMP: Update MINC CMake code
>> >>      MINC 2015-08-18 (6d7e3ba8)
>> >>      MINC 2015-09-13 (95cd5374)
>> >>
>> >> Xiaoxiao Liu (1):
>> >>      DOC: update email address for xiaoxiao.
>> >>
>> >> Zach Williamson (10):
>> >>      BUG: Use correct libraries for ImageFusion tests
>> >>      ENH: Consolidate Library Dependencies
>> >>      COMP: Add a missing link to Review module
>> >>      COMP: Use correct linking macro in DCMTK
>> >>      BUG: Use correct libraries for TestKernel tests
>> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>> >>      ENH: Use new linking system macros
>> >>      PERF: Avoid searching private dependencies for include directories
>> >>      COMP: Recover missing dependencies
>> >>      ENH: use new linking macros in Filtering module
>> >>
>> >>
>> >>
>> >> -----------------------------------------------------
>> >> Errors or omissions? Please fix them here:
>> >>
>> >>
>> >>
>> >> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>> >> _____________________________________
>> >> Powered by www.kitware.com
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Kitware offers ITK Training Courses, for more information visit:
>> >> http://www.kitware.com/products/protraining.php
>> >>
>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >>
>> >> Follow this link to subscribe/unsubscribe:
>> >> http://public.kitware.com/mailman/listinfo/insight-users

From matt.mccormick at kitware.com  Wed Nov 25 11:11:27 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 25 Nov 2015 11:11:27 -0500
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
	ready for testing!
In-Reply-To: <CAJYHnFKz-dWExf8UWJUuBB1A1DQequ34=0vcwHsyhc7X7waWjA@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJYHnFKz-dWExf8UWJUuBB1A1DQequ34=0vcwHsyhc7X7waWjA@mail.gmail.com>
Message-ID: <CALzTN-RoGLosE+T-1SjD=LEYdnha-WqLq_4OxCaShouqKGqWRg@mail.gmail.com>

Hi Mihail,

Is it possible to share the code and data to reproduce this issue?

Thanks,
Matt

On Wed, Nov 25, 2015 at 11:08 AM, Mihail Isakov via Insight-users
<insight-users at itk.org> wrote:
> Hello,
> not 100% sure,  but looks like  i can not open "*.nii.gz" files
> directly (" Can not create ImageIO for ..."),  tried different build
> options without success (system zlib on/off etc) ... never has this
> problem before...
>
>
> Regards,
> Mihail
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users

From skalexander at gmail.com  Wed Nov 25 11:29:40 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 16:29:40 +0000
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
	ready for testing!
In-Reply-To: <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
Message-ID: <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>

Two of the three failures look like truncation issues (like
https://open.cdash.org/testDetails.php?test=395263772&build=4117158)

The other (
https://open.cdash.org/testDetails.php?test=395264938&build=4117158)  is
less obvious.

If I have time this evening I'll try and have a look at these.

Is your standard test build in 32 bit ?  That might explain the difference
if there are some underlying type assumptions, but not obvious why 2015
would trigger but not 2013.



On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Ah, cool!  Here:
>
>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>
> Could you please look into the test failures?
>
> @Hyun Jae, could you please look into the KWStyle warnings?
>
> Thanks,
> Matt
>
>
> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > Sorry, if I wasn't clear - I submitted two builds yesterday from
> SIMON-LAP,
> > (actually 3 as I wasn't sure the config was right on the first one).
> VS2013
> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
> > truncation problem on the resuts.
> >
> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> Hi Simon,
> >>
> >> Thanks for testing.
> >>
> >> We have a Visual Studio 2015 build on the dashboard that is green:
> >>
> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
> >>
> >> Are there any different flags? Could you please submit an Experimental
> >> build?
> >>
> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit -C
> >> Release
> >>
> >> from a fresh build tree.
> >>
> >> Thanks,
> >> Matt
> >>
> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <skalexander at gmail.com
> >
> >> wrote:
> >> > Looks like a few problems with x64 build on visual studio 2015 - do
> you
> >> > have
> >> > a test machine in this configuration?
> >> >
> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
> matt.mccormick at kitware.com>
> >> > wrote:
> >> >>
> >> >> On behalf of the Insight Toolkit community, we are proud to announce
> >> >> that
> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
> >> >> testing!
> >> >>
> >> >> Please take this opportunity to test the new features in the release
> >> >> candidate.
> >> >>
> >> >>
> >> >> To obtain the source code,
> >> >>
> >> >>   git clone http://itk.org/ITK.git
> >> >>  cd ITK
> >> >>  git checkout -q --detach v4.9rc01
> >> >>
> >> >> For more details, please see the Git documentation [1].
> >> >>
> >> >>
> >> >> A few selected highlights for this release:
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * New Remote modules: the Cuberille module for smooth generation of
> >> >> meshes
> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
> module
> >> >> improved edge-preserving smoothing.
> >> >> * Build your own ITK module outside the source tree, add continuous
> >> >> integration testing on GitHub, and easily add Python wrapping for
> your
> >> >> C++
> >> >> algorithms.
> >> >> * Python wrapping, including Python 3, builds faster with a more
> >> >> standard
> >> >> installation
> >> >> * Improved performance of itk::Image::GetPixel and operations on
> >> >> itk::VariableLengthVector?s
> >> >> * Generate a FlatStructuringElement from an image
> >> >> * Point-set registration with time-varying B-splines
> >> >> * Module dependencies can now be specified as public / private /
> >> >> compile /
> >> >> test
> >> >>
> >> >>
> >> >> Please test the release candidate and share your experiences on the
> >> >> mailing list, issue tracker, and Gerrit Code Review. The new module
> >> >> dependency specification mechanism may unearth missing dependencies
> for
> >> >> projects that use ITK COMPONENTS with the CMake find_package command.
> >> >>
> >> >>
> >> >> An Experimental build, which demonstrates how the test suite performs
> >> >> on
> >> >> your local build system, can be submitted to the dashboard [2] with:
> >> >>
> >> >>   mkdir ../ITK-build
> >> >>   cd ../ITK-build
> >> >>   cmake ../ITK
> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
> >> >>
> >> >> Visual Studio builds must also add ?-C Release? to the ctest command.
> >> >>
> >> >> Notify the mailing list if there are any unexpected failures.
> Testing
> >> >> your own applications against the RC is also appreciated.
> >> >>
> >> >>
> >> >> Congratulations and well done to the 35 contributors to this release.
> >> >> We
> >> >> would especially like to recognize the new contributors: Mikhail
> >> >> Isakov,
> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
> >> >> Odutola,
> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson,
> >> >> Luc
> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
> >> >>
> >> >>
> >> >> The final release is scheduled for mid-December.
> >> >>
> >> >>
> >> >> [1] http://www.itk.org/Wiki/ITK/Git
> >> >>
> >> >> [2] http://open.cdash.org/index.php?project=Insight
> >> >>
> >> >>
> >> >>
> >> >> New Features
> >> >> ---------------------
> >> >>
> >> >> Wrapping improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Python 3 supported
> >> >> * Wrapping builds much faster due to CastXML binaries
> >> >> * LandmarkBasedTransformInitializer now wrapped
> >> >> * NumPy bridge with VisualStudio
> >> >> * Wrapping for the MinimalPathExtraction module
> >> >> * Wrapping is now installed into Python?s site-packages directory in
> >> >> the
> >> >> ?itk? package
> >> >> * Wrapping package size is decreased
> >> >> * Better package portability on Mac OSX
> >> >>
> >> >>
> >> >> New Remote Modules
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Cuberille
> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
> >> >> * AnisotropicDiffusionLBR
> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
> >> >>    * Web browser reproducibility:
> >> >> http://www.kitware.com/blog/home/post/942
> >> >>
> >> >>
> >> >> Core Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * External Modules can now be developed outside of the ITK source
> tree
> >> >> and
> >> >> on GitHub
> >> >>    * Details: http://www.kitware.com/blog/home/post/997
> >> >> * New utilities in itk::Math:
> >> >>    * AlmostEquals
> >> >>    * NotAlmostEquals
> >> >>    * ExactlyEquals
> >> >>    * NotExactlyEquals
> >> >> * New itk::NumericTraits
> >> >>    * IsInteger
> >> >>    * IsSigned
> >> >> * Improved C++11 support
> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
> >> >> * Improved capabilities of itk::ResourceProbe and
> >> >> itk::ResourceProbesCollectorBase
> >> >> * Improve numerical stability in VNL eigen system estimation
> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
> >> >>
> >> >>
> >> >> Filtering Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Generate a FlatStructuringElement from an image
> >> >> * WarpImageFilter support VectorImage?s
> >> >> * ConvertLabelMap supports different LabelMap types
> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
> >> >> module
> >> >>
> >> >>
> >> >> Registration Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Point-set registration with time-varying B-splines
> >> >>
> >> >>
> >> >> Build Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Module dependencies can now be specified as public / private /
> >> >> compile /
> >> >> test
> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
> >> >> * Option to export all library symbols on Windows:
> >> >>    * Details: http://www.kitware.com/blog/home/post/939
> >> >> * Expat third party library is now name mangled
> >> >> * Many more modules can be built as shared libraries
> >> >> * KWStyle is automatically built and configured when tests are built
> >> >>
> >> >>
> >> >> Performance Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
> >> >> metaprogramming
> >> >>    * itk::mpl::{TrueType,FalseType}
> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
> >> >>    * itk::mpl::EnableIf
> >> >>    * itk::mpl::IsBaseOf
> >> >>    * itk::mpl::IsConvertible
> >> >>    * itk::mpl::IsNumber
> >> >>    * itk::mpl::IsSame
> >> >>    * itk::mpl::PromoteType
> >> >> * Image::GetPixel performance improvements
> >> >> * Many itk::VariableLengthVector performance improvements
> >> >> * AdaptiveHistogramEqualization uses a moving histogram
> >> >> * WarpImageFilter performance improvements
> >> >>
> >> >>
> >> >> Documentation Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
> >> >> * ITK Software Guide improvements
> >> >>    * How to use Python wrapping
> >> >>    * How to create an ITK module
> >> >>    * Improvements to segmentation examples
> >> >>    * Expanded Canny edge detection example
> >> >>    * Expanded tree container example
> >> >>
> >> >>
> >> >> Third Party Library Updates
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * FFTW updated to latest upstream
> >> >> * Build with recent OpenCV 2 and 3
> >> >> * Build with the latest VTK
> >> >> * PNG update to the latest upstream
> >> >> * GDCM updated to the latest upstream
> >> >> * KWSys updated to the latest upstream
> >> >> * MINC updated to the latest upstream
> >> >> * SWIG updated to the latest upstream
> >> >> * Third party PNG and MINC are now Git subtrees
> >> >>
> >> >>
> >> >> Style improvements -- ITK gets more stylish with every release!
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
> >> >>
> >> >>
> >> >> Improved code coverage -- we are at 84.9%!
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >>
> >> >> * *Lots* of important bug fixes
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >>
> >> >> * And much more! See details in the log below.
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >>
> >> >>
> >> >> Changes from v4.8.0..v4.9rc01
> >> >> --------------------------------------------
> >> >>
> >> >>
> >> >> Abhishek Tiwari (1):
> >> >>      BUG: "tmpImageIndex" not initialized to 0.
> >> >>
> >> >> Adam Snyder (1):
> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
> >> >>
> >> >> Alexander Leinoff (6):
> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
> >> >> itkMath.h
> >> >>      COMP: Removes floating-point equality checks
> >> >>      ENH: COMP: Adds support for complex values to Math::AlmostEquals
> >> >>      ENH: Updates fftw dependency
> >> >>
> >> >> Arnaud Gelas (5):
> >> >>      COMP: fix warning (unused local typedef)
> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
> >> >>      DOC: add doxgen documentation for
> >> >> BinaryImageToLevelSetImageAdaptor
> >> >>      ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
> >> >>
> >> >> Betsy McPhail (1):
> >> >>      BUG: Improve buffer alignment in OctreeNode .
> >> >>
> >> >> Bill Hoffman (2):
> >> >>      ENH: Use new CMake Windows export symbol dll feature.
> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
> >> >> installed.
> >> >>
> >> >> Bill Lorensen (4):
> >> >>      COMP: VTkGlue linker errors
> >> >>      BUG: Inappropriate use of AlmostEquals
> >> >>      ENH: Bump tag for wiki examples
> >> >>      ENH: Better layout strategy
> >> >>
> >> >> Brad King (3):
> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
> project
> >> >>
> >> >> Bradley Lowekamp (31):
> >> >>      BUG: Avoid null deference in PrintSelf with default construction
> >> >>      ENH: Enable base classes for templates of landmark initializer
> >> >>      STYLE: Use "Swap" for ITK member name
> >> >>      BUG: Demonstrate Eigen analysis failure
> >> >>      BUG: Fix computation of Eigen analysis
> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
> >> >>      ENH: Correctly demonstrate float point Eigen failure
> >> >>      ENH: compile vnl_math_hypot, and use at least double
> >> >>      ENH: Adding initial update script from used libpng version.
> >> >>      ENH: removing non-subtree files for itkpng
> >> >>      ENH: Ported ITK changes for building to subtree merged code
> >> >>      ENH: Update libpng update script for v1.6.9
> >> >>      BUG: Use ParameterValueType for computation of landmark affine
> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >> >>      ENH: Update itkpng zlib, configuration, and rename
> >> >>      ENH: Update itkpng name mangling
> >> >>      BUG: Use const pointer in Set method for constant ReferenceImage
> >> >> ivar
> >> >>      BUG: Increase tolerance for
> PhysicsBasedNonRigidRegistrationMethod
> >> >>      BUG: Demonstrate side effect on registration due to
> BSplineScatter
> >> >> change
> >> >>      ENH: Move MovingHistogramImageFilter base classes to
> >> >> ImageFilterBase
> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >> >>      BUG: Avoid null deference in PrintSelf with default construction
> >> >>      BUG: Use const pointer in Set method for constant ReferenceImage
> >> >> ivar
> >> >>      ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram
> >> >> base
> >> >>      COMP: address sign unsigned comparison warning
> >> >>      COMP: Address signed unsigned comparison warning
> >> >>      COMP: Address unused member variable and methods in anonymous ns
> >> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
> >> >> range
> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
> >> >>      BUG: Reduce number of targets with MSVC
> >> >>
> >> >> Davis Vigneault (7):
> >> >>      DOC: Minor improvements to segmentation examples.
> >> >>      DOC: Expanded Canny Edge Detection Example
> >> >>      DOC: Expanded TreeContainer Example
> >> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >> >>      COMP: Update Git Tag for Subdivision Module
> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >> >>
> >> >> D?enan Zuki? (1):
> >> >>      STYLE: better formatting of the "usage" message
> >> >>
> >> >> Eugene Prilepin (1):
> >> >>      BUG: Fix a template name formation in python wrappings
> >> >>
> >> >> Floris Berendsen (1):
> >> >>      STYLE: Improve naming conventions in comments.
> >> >>
> >> >> Hans Johnson (29):
> >> >>      STYLE: Instrument for FixedParameters typedef
> >> >>      BUG: Demonstrate DisplacementTransformFailure
> >> >>      BUG: FixedParameters should be double precision
> >> >>      STYLE: Minor code style issues for MGHIO
> >> >>      COMP: Update to version for WikiExamples
> >> >>      ENH: Update Sphinx for ITK 4.8.0
> >> >>      ENH: Update MGHIO to be shared lib
> >> >>      ENH: Provide consistent floating point comparisons
> >> >>      BUG: Fix MGHIO to fix write failures
> >> >>      PERF: Remove floating point as sentinal value
> >> >>      COMP: Const correctness needs to be maintained
> >> >>      BUG: Preserve backwards compatibility
> >> >>      DOC: Provide consistent naming in comments
> >> >>      ENH: Conversion between transform type tolerance
> >> >>      STYLE: Prefer initialization to assignment
> >> >>      ENH: Missing ITK_OVERRIDE
> >> >>      COMP: Need to propagate ITKGDCM
> >> >>      COMP: Need to propagate ITKGDCM
> >> >>      COMP: Add missing ITK_OVERRIDE
> >> >>      STYLE: Minor code style issues for MGHIO
> >> >>      COMP: Update to version for WikiExamples
> >> >>      ENH: Update Sphinx for ITK 4.8.0
> >> >>      ENH: Update MGHIO to be shared lib
> >> >>      BUG: Fix MGHIO to fix write failures
> >> >>      ENH: C++11 allows for rigorous =delete
> >> >>      COMP: Remove unnecessary failing assert test
> >> >>      ENH: Ignore internal files for the Clion editor
> >> >>      COMP: Fix VNL compilation for wider C++11 support
> >> >>      BUG: In configuration test need to mirror code
> >> >>
> >> >> Hyun Jae Kang (27):
> >> >>      BUG: Remove std::cout calls from class
> >> >>      BUG: Avoid an unexpected output of static_cast
> >> >>      BUG: Update python example codes for ImageRegistration
> >> >>      BUG: Retrieve the missed wrap file
> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> >> >> header.
> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
> >> >> libraries
> >> >>      BUG: Fixed older XCode linking error
> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
> >> >>      BUG: Remove std::cout calls from class
> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> >> >> header.
> >> >>      BUG: Fixed older XCode linking error
> >> >>      ENH: Add automatic KWStyle build and configuration setup
> >> >>      COMP: KWStyle shadow, format-nonliteral and autological-compare
> >> >> warning.
> >> >>      COMP: Fixed the warning messages from itkGPU Module
> >> >>      COMP: Fixed a warning message of unused-private-field
> >> >>      COMP: Apply latest version of KWStyle
> >> >>      COMP: Update KWStyle to fix its additional warning messages
> >> >>      COMP: Update KWStyle to fix its additional warning messages
> >> >>      COMP: Fix data-conversion warning messages on Windows
> >> >>      ENH: Update itkResourceProbe to calculate statistical data
> >> >>      COMP: Fix data-conversion warning messages on VS14
> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
> >> >>      ENH: Update the Report() function of
> >> >> itkResourceProbesCollectorBase
> >> >>      COMP: Fix data-conversion warning message on itkResourceProbe
> >> >>      COMP: Fix additional warning messages of KWStyle
> >> >>      COMP: Fix data-conversion warning messages
> >> >>
> >> >> Jon Haitz Legarreta (6):
> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
> >> >>      BUG: Fix compilation issues for
> StatisticsUniqueLabelMapFilterTest
> >> >>      BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
> >> >>      ENH: Improve code coverage for
> >> >> itkParametricSpaceToImageSpaceMeshFilter
> >> >>
> >> >> Julien Michel (1):
> >> >>      ENH: Support of VectorImage as template parameters for
> >> >> WarpImageFilter
> >> >>
> >> >> Junjie Bai (2):
> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
> >> >>      BUG: LabelObject CopyAttribute support different LabelObject
> type
> >> >>
> >> >> KWSys Robot (4):
> >> >>      KWSys 2015-07-10 (c9336bcf)
> >> >>      KWSys 2015-07-30 (f63febb7)
> >> >>      KWSys 2015-08-24 (cdaf522c)
> >> >>      KWSys 2015-08-28 (dc3fdd7f)
> >> >>
> >> >> LIBPNG Upstream (2):
> >> >>      PNG 2009-04-06 (e68f5a36)
> >> >>      PNG 2014-02-05 (3e753eb8)
> >> >>
> >> >> Laurentiu Nicola (2):
> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
> >> >>
> >> >> Luc Hermitte (8):
> >> >>      PERF: itk::Image::GetPixel() performance improvment.
> >> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
> >> >>      BUG: Error in VariableLengthVector Unit Tests
> >> >>      PERF: Performance enhancements on VLV 2/...
> >> >>      PERF: Performances enhancements on VLV 3/...
> >> >>      COMP: Fix signed/unsigned warnings
> >> >>      BUG: std::copy/fill on empty VLV
> >> >>
> >> >> Lucas Gandel (4):
> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
> >> >>      STYLE: Fix KWStyle dashboard errors
> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
> >> >>
> >> >> Mathieu Malaterre (1):
> >> >>      BUG: Name mangle the included expat third party library.
> >> >>
> >> >> Matthew McCormick (94):
> >> >>      ENH: Change itkSystemInformationTest to
> itkCMakeConfigurationTest.
> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
> >> >>      ENH: Bump ITK version to 4.9.0.
> >> >>      BUG: Remove std::cout calls from classes.
> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >> >>      BUG: Implement UpdateLargestPossibleRegion for
> >> >> ImageToVTKImageFilter.
> >> >>      COMP: Add link interface specification for wrapping
> >> >> target_link_libraries.
> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
> >> >>      COMP: Fix MINCTransformIO factory registration.
> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
> >> >>      COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
> >> >>      COMP: Disable the gold linker for static builds on Ubuntu 14.04.
> >> >>      ENH: Use Windows binaries for CastXML.
> >> >>      ENH: Add better scoping in igenerator.py.
> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
> >> >>      BUG: LevelSetsv4 used signed char instead of char.
> >> >>      ENH: Add better scoping to idx.py.
> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
> >> >>      STYLE: Use prefix increment operator in ImageBase.
> >> >>      DOC: Correct spelling of Continuous.
> >> >>      ENH: Add more progress information to IterativeClosestPoint2.
> >> >>      BUG: Build BridgeNumPy with Visual Studio.
> >> >>      ENH: Add ITKModuleExternal.cmake
> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
> >> >>      BUG: Use CastXML binary built in Release.
> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
> >> >>      COMP: Set CMP0054 to new.
> >> >>      COMP: Address line length too long for Software Guide.
> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
> >> >>      BUG: Support Python 3 wrapping module initialization.
> >> >>      BUG: Update itkTemplate.py for Python 3.
> >> >>      BUG: Update itkExtras.py for Python 3.
> >> >>      BUG: Prevent Python callback addition recursion.
> >> >>      BUG: Fix test scripts for Python 3.
> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
> >> >>      ENH: Allow projects to build against an external module.
> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
> >> >>      ENH: Rename _cable_ to _wrappers_.
> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
> >> >>      ENH: Bump CastXML version to 2015-30-29.
> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
> >> >>      COMP: Add missing ITKIOImageBase dependency for
> ITKTransformMINC.
> >> >>      COMP: Use itkSimpleNewMacro in
> >> >> ThreadedIteratorRangePartitionerTest.
> >> >>      ENH: Add wrapping support for building modules externally.
> >> >>      BUG: Fix KWStyle test paths when building a module externally.
> >> >>      ENH: Add Cuberille Remote module.
> >> >>      COMP: Remove carriage returns from Cuberille remote.
> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >> >>      DOC: Correct spelling of Continuous.
> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >> >>      STYLE: Use prefix increment operator in ImageBase.
> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it gets
> >> >> installed."
> >> >>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
> >> >>      ENH: Marking wrapping CMake configuration variables as advanced.
> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot have
> >> >> override.
> >> >>      COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
> >> >>      BUG: Improve KWStyle ExternalProject utilization.
> >> >>      ENH: Remove old KWStyle build script.
> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not found.
> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
> >> >>      ENH: Install Python bindings into site-packages.
> >> >>      ENH: Improve readability of Python site-packages path detection.
> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
> >> >> warning.
> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
> >> >>      ENH: Improves names and export of module dependencies.
> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
> >> >>      COMP: Set CMP0054 to new.
> >> >>      BUG: Remove unused wrapping files.
> >> >>      BUG: Do install install wrapping development files.
> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
> >> >>      BUG: Fix detection of the gold linker.
> >> >>      BUG: Update Python package installation locations.
> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
> >> >>      COMP: Link to VTK Python when built with Kits support.
> >> >>      BUG: Install itk_minc2.h header.
> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
> >> >>
> >> >> Michka Popoff (9):
> >> >>      ENH: Update to swig 3.0.7
> >> >>      ENH: Do not link against specific Python library on OS X
> >> >>      COMP: Fix wrapping warnings when building with
> >> >> ITK_WRAP_IMAGE_DIMS=2
> >> >>      COMP: Add missing wrapping for TransformBase
> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
> >> >> ImageFilterBase
> >> >> module
> >> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >> >>      ENH: Allow operations on Indexes and Offsets in Python
> >> >>
> >> >> Mikhail Isakov (1):
> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
> image
> >> >>
> >> >> Nick Tustison (5):
> >> >>      BUG:  Set a default b-spline epsilon.
> >> >>      ENH: Adding testing for closed loop.
> >> >>      BUG:  Updating B-spline classes with the same epsilon strategy.
> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
> >> >>      ENH:  Point-set registration with time-varying B-spline.
> >> >>
> >> >> Olivier Commowick (3):
> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
> >> >> system
> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
> pythag
> >> >> from V3P)
> >> >>      BUG: Switch eigenvalues computation to double
> >> >>
> >> >> Pablo Hernandez-Cerdan (2):
> >> >>      ENH: Help class for itkFlatStructuringElement with constructor
> >> >> from
> >> >> images.
> >> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
> >> >>
> >> >> Seun Odutola (1):
> >> >>      COMP: Fixed name clash with Apple header (check Macro), renamed
> >> >> check
> >> >> to Check
> >> >>
> >> >> Shawn Waldon (1):
> >> >>      COMP: Set target OS X version in environment for tools using
> >> >> compiler
> >> >>
> >> >> Simon Alexander (1):
> >> >>      BUG: incorrect closest point computation
> >> >>
> >> >> Tobias Wood (2):
> >> >>      BUG: LBFGSB was printing messages even with debug switched off.
> >> >>      BUG: Removed an unguarded print statement.
> >> >>
> >> >> Vladimir S. FONOV (9):
> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
> >> >>      COMP: Changing the order of HDF5 library components
> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
> >> >> Transform
> >> >>      STYLE: updated comments to properly reference LIBMINC
> >> >>      ENH: Add script to merge upstream MINC as a subtree
> >> >>      MINC 2015-07-23 (c033d431)
> >> >>      COMP: Update MINC CMake code
> >> >>      MINC 2015-08-18 (6d7e3ba8)
> >> >>      MINC 2015-09-13 (95cd5374)
> >> >>
> >> >> Xiaoxiao Liu (1):
> >> >>      DOC: update email address for xiaoxiao.
> >> >>
> >> >> Zach Williamson (10):
> >> >>      BUG: Use correct libraries for ImageFusion tests
> >> >>      ENH: Consolidate Library Dependencies
> >> >>      COMP: Add a missing link to Review module
> >> >>      COMP: Use correct linking macro in DCMTK
> >> >>      BUG: Use correct libraries for TestKernel tests
> >> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
> >> >>      ENH: Use new linking system macros
> >> >>      PERF: Avoid searching private dependencies for include
> directories
> >> >>      COMP: Recover missing dependencies
> >> >>      ENH: use new linking macros in Filtering module
> >> >>
> >> >>
> >> >>
> >> >> -----------------------------------------------------
> >> >> Errors or omissions? Please fix them here:
> >> >>
> >> >>
> >> >>
> >> >>
> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
> >> >> _____________________________________
> >> >> Powered by www.kitware.com
> >> >>
> >> >> Visit other Kitware open-source projects at
> >> >> http://www.kitware.com/opensource/opensource.html
> >> >>
> >> >> Kitware offers ITK Training Courses, for more information visit:
> >> >> http://www.kitware.com/products/protraining.php
> >> >>
> >> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >>
> >> >> Follow this link to subscribe/unsubscribe:
> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>
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From mohammedrashadkm at gmail.com  Wed Nov 25 15:37:24 2015
From: mohammedrashadkm at gmail.com (Rashad Kanavath)
Date: Wed, 25 Nov 2015 21:37:24 +0100
Subject: [ITK-dev] [ITK] clang throws a lot of -Wunknown-attributes
	warning.
In-Reply-To: <CALzTN-SnLVa1dB1voe0fnjCP3p0FzdeBsyBLVe2HTQj0E+PDBw@mail.gmail.com>
References: <CANNqv9dKMUwETQFsVW1kE72J7vfFi=0KAuhdN7T5KX_eXtraew@mail.gmail.com>
 <CALzTN-SnLVa1dB1voe0fnjCP3p0FzdeBsyBLVe2HTQj0E+PDBw@mail.gmail.com>
Message-ID: <CANNqv9fuaxQ5S00BdbO6kNFBMtB8o4S_3idhGP0sfKn3b-5s5g@mail.gmail.com>

On Wed, Nov 25, 2015 at 4:47 PM, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Rashad,
>
> Thanks for discussing issue.
>
> I have been using that compiler and have not come across those warnings.
> Are there any non-default flags or CMake options being used?
>

> Could you please submit an Experimental build to the dashboard? ('ctest -D
> Experimental' from a clean build tree)
>

I don't have access to the machine to do a dashboard submission. I will ask
the person or try a  new submission from my system. I will first check if
there is any warning flag that is messing up.

I will let you know tomorrow or day after.

Thanks,
> Matt
>
> On Tue, Nov 24, 2015 at 10:39 AM, Rashad Kanavath <
> mohammedrashadkm at gmail.com> wrote:
>
>> Hello all,
>>
>> I am getting a lot of warnings when using itk with clang compiler.
>>
>> clang version: 3.5.0
>> Fedora Linux 22 x86_64
>> ITK trunk
>>
>> In file included from
>> /home/otbtesting/sources/orfeo/trunk/OTB-Nightly/Modules/Core/SpatialObjects/include/otbLineSpatialObjectList.h:23:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkLineSpatialObject.h:23:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkPointBasedSpatialObject.h:21:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkSpatialObject.h:23:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineGeometryFrame.h:23:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkScalableAffineTransform.h:21:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineTransform.h:21:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkMatrixOffsetTransformBase.h:24:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkTransform.h:25:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.h:1348:
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.hxx:312:3:
>> warning: unknown attribute 'error' ignored [-Wunknown-attributes]
>>   itkStaticAssert(
>>   ^
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkStaticAssert.h:40:35:
>> note: expanded from macro 'itkStaticAssert'
>>       ({extern int __attribute__((error(str))) StaticAssertFailure(); \
>>                                   ^
>> 3 warnings generated.
>>
>> --
>> Regards,
>>    Rashad
>>
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>>
>


-- 
Regards,
   Rashad
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From dzenanz at gmail.com  Wed Nov 25 15:57:58 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 25 Nov 2015 15:57:58 -0500
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
 ready for testing!
In-Reply-To: <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
Message-ID: <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>

Building git master from Nov 23rd with examples and testing enabled I get
14 compile errors in VS2015 debug x64. Should we coordinate our efforts in
fixing them?

On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com>
wrote:

> Two of the three failures look like truncation issues (like
> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>
> The other (
> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)  is
> less obvious.
>
> If I have time this evening I'll try and have a look at these.
>
> Is your standard test build in 32 bit ?  That might explain the difference
> if there are some underlying type assumptions, but not obvious why 2015
> would trigger but not 2013.
>
>
>
> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
>> Ah, cool!  Here:
>>
>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>
>> Could you please look into the test failures?
>>
>> @Hyun Jae, could you please look into the KWStyle warnings?
>>
>> Thanks,
>> Matt
>>
>>
>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>> SIMON-LAP,
>> > (actually 3 as I wasn't sure the config was right on the first one).
>> VS2013
>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>> > truncation problem on the resuts.
>> >
>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <matt.mccormick at kitware.com
>> >
>> > wrote:
>> >>
>> >> Hi Simon,
>> >>
>> >> Thanks for testing.
>> >>
>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>> >>
>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>> >>
>> >> Are there any different flags? Could you please submit an Experimental
>> >> build?
>> >>
>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>> -C
>> >> Release
>> >>
>> >> from a fresh build tree.
>> >>
>> >> Thanks,
>> >> Matt
>> >>
>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>> skalexander at gmail.com>
>> >> wrote:
>> >> > Looks like a few problems with x64 build on visual studio 2015 - do
>> you
>> >> > have
>> >> > a test machine in this configuration?
>> >> >
>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>> matt.mccormick at kitware.com>
>> >> > wrote:
>> >> >>
>> >> >> On behalf of the Insight Toolkit community, we are proud to announce
>> >> >> that
>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>> >> >> testing!
>> >> >>
>> >> >> Please take this opportunity to test the new features in the release
>> >> >> candidate.
>> >> >>
>> >> >>
>> >> >> To obtain the source code,
>> >> >>
>> >> >>   git clone http://itk.org/ITK.git
>> >> >>  cd ITK
>> >> >>  git checkout -q --detach v4.9rc01
>> >> >>
>> >> >> For more details, please see the Git documentation [1].
>> >> >>
>> >> >>
>> >> >> A few selected highlights for this release:
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * New Remote modules: the Cuberille module for smooth generation of
>> >> >> meshes
>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>> module
>> >> >> improved edge-preserving smoothing.
>> >> >> * Build your own ITK module outside the source tree, add continuous
>> >> >> integration testing on GitHub, and easily add Python wrapping for
>> your
>> >> >> C++
>> >> >> algorithms.
>> >> >> * Python wrapping, including Python 3, builds faster with a more
>> >> >> standard
>> >> >> installation
>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>> >> >> itk::VariableLengthVector?s
>> >> >> * Generate a FlatStructuringElement from an image
>> >> >> * Point-set registration with time-varying B-splines
>> >> >> * Module dependencies can now be specified as public / private /
>> >> >> compile /
>> >> >> test
>> >> >>
>> >> >>
>> >> >> Please test the release candidate and share your experiences on the
>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new module
>> >> >> dependency specification mechanism may unearth missing dependencies
>> for
>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>> command.
>> >> >>
>> >> >>
>> >> >> An Experimental build, which demonstrates how the test suite
>> performs
>> >> >> on
>> >> >> your local build system, can be submitted to the dashboard [2] with:
>> >> >>
>> >> >>   mkdir ../ITK-build
>> >> >>   cd ../ITK-build
>> >> >>   cmake ../ITK
>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>> Submit
>> >> >>
>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>> command.
>> >> >>
>> >> >> Notify the mailing list if there are any unexpected failures.
>> Testing
>> >> >> your own applications against the RC is also appreciated.
>> >> >>
>> >> >>
>> >> >> Congratulations and well done to the 35 contributors to this
>> release.
>> >> >> We
>> >> >> would especially like to recognize the new contributors: Mikhail
>> >> >> Isakov,
>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>> >> >> Odutola,
>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson,
>> >> >> Luc
>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>> >> >>
>> >> >>
>> >> >> The final release is scheduled for mid-December.
>> >> >>
>> >> >>
>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>> >> >>
>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>> >> >>
>> >> >>
>> >> >>
>> >> >> New Features
>> >> >> ---------------------
>> >> >>
>> >> >> Wrapping improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Python 3 supported
>> >> >> * Wrapping builds much faster due to CastXML binaries
>> >> >> * LandmarkBasedTransformInitializer now wrapped
>> >> >> * NumPy bridge with VisualStudio
>> >> >> * Wrapping for the MinimalPathExtraction module
>> >> >> * Wrapping is now installed into Python?s site-packages directory in
>> >> >> the
>> >> >> ?itk? package
>> >> >> * Wrapping package size is decreased
>> >> >> * Better package portability on Mac OSX
>> >> >>
>> >> >>
>> >> >> New Remote Modules
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Cuberille
>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>> >> >> * AnisotropicDiffusionLBR
>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>> >> >>    * Web browser reproducibility:
>> >> >> http://www.kitware.com/blog/home/post/942
>> >> >>
>> >> >>
>> >> >> Core Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * External Modules can now be developed outside of the ITK source
>> tree
>> >> >> and
>> >> >> on GitHub
>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>> >> >> * New utilities in itk::Math:
>> >> >>    * AlmostEquals
>> >> >>    * NotAlmostEquals
>> >> >>    * ExactlyEquals
>> >> >>    * NotExactlyEquals
>> >> >> * New itk::NumericTraits
>> >> >>    * IsInteger
>> >> >>    * IsSigned
>> >> >> * Improved C++11 support
>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>> >> >> * Improved capabilities of itk::ResourceProbe and
>> >> >> itk::ResourceProbesCollectorBase
>> >> >> * Improve numerical stability in VNL eigen system estimation
>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>> >> >>
>> >> >>
>> >> >> Filtering Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Generate a FlatStructuringElement from an image
>> >> >> * WarpImageFilter support VectorImage?s
>> >> >> * ConvertLabelMap supports different LabelMap types
>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>> >> >> module
>> >> >>
>> >> >>
>> >> >> Registration Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Point-set registration with time-varying B-splines
>> >> >>
>> >> >>
>> >> >> Build Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Module dependencies can now be specified as public / private /
>> >> >> compile /
>> >> >> test
>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>> >> >> * Option to export all library symbols on Windows:
>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>> >> >> * Expat third party library is now name mangled
>> >> >> * Many more modules can be built as shared libraries
>> >> >> * KWStyle is automatically built and configured when tests are built
>> >> >>
>> >> >>
>> >> >> Performance Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
>> >> >> metaprogramming
>> >> >>    * itk::mpl::{TrueType,FalseType}
>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>> >> >>    * itk::mpl::EnableIf
>> >> >>    * itk::mpl::IsBaseOf
>> >> >>    * itk::mpl::IsConvertible
>> >> >>    * itk::mpl::IsNumber
>> >> >>    * itk::mpl::IsSame
>> >> >>    * itk::mpl::PromoteType
>> >> >> * Image::GetPixel performance improvements
>> >> >> * Many itk::VariableLengthVector performance improvements
>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>> >> >> * WarpImageFilter performance improvements
>> >> >>
>> >> >>
>> >> >> Documentation Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>> >> >> * ITK Software Guide improvements
>> >> >>    * How to use Python wrapping
>> >> >>    * How to create an ITK module
>> >> >>    * Improvements to segmentation examples
>> >> >>    * Expanded Canny edge detection example
>> >> >>    * Expanded tree container example
>> >> >>
>> >> >>
>> >> >> Third Party Library Updates
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * FFTW updated to latest upstream
>> >> >> * Build with recent OpenCV 2 and 3
>> >> >> * Build with the latest VTK
>> >> >> * PNG update to the latest upstream
>> >> >> * GDCM updated to the latest upstream
>> >> >> * KWSys updated to the latest upstream
>> >> >> * MINC updated to the latest upstream
>> >> >> * SWIG updated to the latest upstream
>> >> >> * Third party PNG and MINC are now Git subtrees
>> >> >>
>> >> >>
>> >> >> Style improvements -- ITK gets more stylish with every release!
>> >> >>
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>> >> >>
>> >> >>
>> >> >> Improved code coverage -- we are at 84.9%!
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >>
>> >> >> * *Lots* of important bug fixes
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >>
>> >> >> * And much more! See details in the log below.
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >>
>> >> >>
>> >> >> Changes from v4.8.0..v4.9rc01
>> >> >> --------------------------------------------
>> >> >>
>> >> >>
>> >> >> Abhishek Tiwari (1):
>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>> >> >>
>> >> >> Adam Snyder (1):
>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>> >> >>
>> >> >> Alexander Leinoff (6):
>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>> >> >> itkMath.h
>> >> >>      COMP: Removes floating-point equality checks
>> >> >>      ENH: COMP: Adds support for complex values to
>> Math::AlmostEquals
>> >> >>      ENH: Updates fftw dependency
>> >> >>
>> >> >> Arnaud Gelas (5):
>> >> >>      COMP: fix warning (unused local typedef)
>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>> >> >>      DOC: add doxgen documentation for
>> >> >> BinaryImageToLevelSetImageAdaptor
>> >> >>      ENH: add tests to exercise
>> itk::ThreadedIteratorRangePartitioner
>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>> >> >>
>> >> >> Betsy McPhail (1):
>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>> >> >>
>> >> >> Bill Hoffman (2):
>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>> >> >> installed.
>> >> >>
>> >> >> Bill Lorensen (4):
>> >> >>      COMP: VTkGlue linker errors
>> >> >>      BUG: Inappropriate use of AlmostEquals
>> >> >>      ENH: Bump tag for wiki examples
>> >> >>      ENH: Better layout strategy
>> >> >>
>> >> >> Brad King (3):
>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>> project
>> >> >>
>> >> >> Bradley Lowekamp (31):
>> >> >>      BUG: Avoid null deference in PrintSelf with default
>> construction
>> >> >>      ENH: Enable base classes for templates of landmark initializer
>> >> >>      STYLE: Use "Swap" for ITK member name
>> >> >>      BUG: Demonstrate Eigen analysis failure
>> >> >>      BUG: Fix computation of Eigen analysis
>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>> >> >>      ENH: Adding initial update script from used libpng version.
>> >> >>      ENH: removing non-subtree files for itkpng
>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>> >> >>      ENH: Update libpng update script for v1.6.9
>> >> >>      BUG: Use ParameterValueType for computation of landmark affine
>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>> >> >>      ENH: Update itkpng name mangling
>> >> >>      BUG: Use const pointer in Set method for constant
>> ReferenceImage
>> >> >> ivar
>> >> >>      BUG: Increase tolerance for
>> PhysicsBasedNonRigidRegistrationMethod
>> >> >>      BUG: Demonstrate side effect on registration due to
>> BSplineScatter
>> >> >> change
>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>> >> >> ImageFilterBase
>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >> >>      BUG: Avoid null deference in PrintSelf with default
>> construction
>> >> >>      BUG: Use const pointer in Set method for constant
>> ReferenceImage
>> >> >> ivar
>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>> MovingHistogram
>> >> >> base
>> >> >>      COMP: address sign unsigned comparison warning
>> >> >>      COMP: Address signed unsigned comparison warning
>> >> >>      COMP: Address unused member variable and methods in anonymous
>> ns
>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>> >> >> range
>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>> >> >>      BUG: Reduce number of targets with MSVC
>> >> >>
>> >> >> Davis Vigneault (7):
>> >> >>      DOC: Minor improvements to segmentation examples.
>> >> >>      DOC: Expanded Canny Edge Detection Example
>> >> >>      DOC: Expanded TreeContainer Example
>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >> >>      COMP: Update Git Tag for Subdivision Module
>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >> >>
>> >> >> D?enan Zuki? (1):
>> >> >>      STYLE: better formatting of the "usage" message
>> >> >>
>> >> >> Eugene Prilepin (1):
>> >> >>      BUG: Fix a template name formation in python wrappings
>> >> >>
>> >> >> Floris Berendsen (1):
>> >> >>      STYLE: Improve naming conventions in comments.
>> >> >>
>> >> >> Hans Johnson (29):
>> >> >>      STYLE: Instrument for FixedParameters typedef
>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>> >> >>      BUG: FixedParameters should be double precision
>> >> >>      STYLE: Minor code style issues for MGHIO
>> >> >>      COMP: Update to version for WikiExamples
>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>> >> >>      ENH: Update MGHIO to be shared lib
>> >> >>      ENH: Provide consistent floating point comparisons
>> >> >>      BUG: Fix MGHIO to fix write failures
>> >> >>      PERF: Remove floating point as sentinal value
>> >> >>      COMP: Const correctness needs to be maintained
>> >> >>      BUG: Preserve backwards compatibility
>> >> >>      DOC: Provide consistent naming in comments
>> >> >>      ENH: Conversion between transform type tolerance
>> >> >>      STYLE: Prefer initialization to assignment
>> >> >>      ENH: Missing ITK_OVERRIDE
>> >> >>      COMP: Need to propagate ITKGDCM
>> >> >>      COMP: Need to propagate ITKGDCM
>> >> >>      COMP: Add missing ITK_OVERRIDE
>> >> >>      STYLE: Minor code style issues for MGHIO
>> >> >>      COMP: Update to version for WikiExamples
>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>> >> >>      ENH: Update MGHIO to be shared lib
>> >> >>      BUG: Fix MGHIO to fix write failures
>> >> >>      ENH: C++11 allows for rigorous =delete
>> >> >>      COMP: Remove unnecessary failing assert test
>> >> >>      ENH: Ignore internal files for the Clion editor
>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>> >> >>      BUG: In configuration test need to mirror code
>> >> >>
>> >> >> Hyun Jae Kang (27):
>> >> >>      BUG: Remove std::cout calls from class
>> >> >>      BUG: Avoid an unexpected output of static_cast
>> >> >>      BUG: Update python example codes for ImageRegistration
>> >> >>      BUG: Retrieve the missed wrap file
>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>> file
>> >> >> header.
>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>> >> >> libraries
>> >> >>      BUG: Fixed older XCode linking error
>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>> >> >>      BUG: Remove std::cout calls from class
>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>> file
>> >> >> header.
>> >> >>      BUG: Fixed older XCode linking error
>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>> >> >>      COMP: KWStyle shadow, format-nonliteral and autological-compare
>> >> >> warning.
>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>> >> >>      COMP: Fixed a warning message of unused-private-field
>> >> >>      COMP: Apply latest version of KWStyle
>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>> >> >>      COMP: Fix data-conversion warning messages on Windows
>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>> >> >>      COMP: Fix data-conversion warning messages on VS14
>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
>> >> >>      ENH: Update the Report() function of
>> >> >> itkResourceProbesCollectorBase
>> >> >>      COMP: Fix data-conversion warning message on itkResourceProbe
>> >> >>      COMP: Fix additional warning messages of KWStyle
>> >> >>      COMP: Fix data-conversion warning messages
>> >> >>
>> >> >> Jon Haitz Legarreta (6):
>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>> >> >>      BUG: Fix compilation issues for
>> StatisticsUniqueLabelMapFilterTest
>> >> >>      BUG: Fix comparison issues for
>> itkStatisticsUniqueLabelMapFilter
>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>> >> >>      ENH: Improve code coverage for
>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>> >> >>
>> >> >> Julien Michel (1):
>> >> >>      ENH: Support of VectorImage as template parameters for
>> >> >> WarpImageFilter
>> >> >>
>> >> >> Junjie Bai (2):
>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>> >> >>      BUG: LabelObject CopyAttribute support different LabelObject
>> type
>> >> >>
>> >> >> KWSys Robot (4):
>> >> >>      KWSys 2015-07-10 (c9336bcf)
>> >> >>      KWSys 2015-07-30 (f63febb7)
>> >> >>      KWSys 2015-08-24 (cdaf522c)
>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>> >> >>
>> >> >> LIBPNG Upstream (2):
>> >> >>      PNG 2009-04-06 (e68f5a36)
>> >> >>      PNG 2014-02-05 (3e753eb8)
>> >> >>
>> >> >> Laurentiu Nicola (2):
>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>> >> >>
>> >> >> Luc Hermitte (8):
>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>> >> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>> >> >>      PERF: Performance enhancements on VLV 2/...
>> >> >>      PERF: Performances enhancements on VLV 3/...
>> >> >>      COMP: Fix signed/unsigned warnings
>> >> >>      BUG: std::copy/fill on empty VLV
>> >> >>
>> >> >> Lucas Gandel (4):
>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>> >> >>      STYLE: Fix KWStyle dashboard errors
>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>> >> >>
>> >> >> Mathieu Malaterre (1):
>> >> >>      BUG: Name mangle the included expat third party library.
>> >> >>
>> >> >> Matthew McCormick (94):
>> >> >>      ENH: Change itkSystemInformationTest to
>> itkCMakeConfigurationTest.
>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>> >> >>      ENH: Bump ITK version to 4.9.0.
>> >> >>      BUG: Remove std::cout calls from classes.
>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>> >> >> ImageToVTKImageFilter.
>> >> >>      COMP: Add link interface specification for wrapping
>> >> >> target_link_libraries.
>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>> >> >>      COMP: Fix MINCTransformIO factory registration.
>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>> >> >>      COMP: Remove unknown doxygen command in
>> AnisotropicDiffusionLBR.
>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>> 14.04.
>> >> >>      ENH: Use Windows binaries for CastXML.
>> >> >>      ENH: Add better scoping in igenerator.py.
>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>> >> >>      ENH: Add better scoping to idx.py.
>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>> >> >>      DOC: Correct spelling of Continuous.
>> >> >>      ENH: Add more progress information to IterativeClosestPoint2.
>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>> >> >>      ENH: Add ITKModuleExternal.cmake
>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>> >> >>      BUG: Use CastXML binary built in Release.
>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>> >> >>      COMP: Set CMP0054 to new.
>> >> >>      COMP: Address line length too long for Software Guide.
>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>> >> >>      BUG: Support Python 3 wrapping module initialization.
>> >> >>      BUG: Update itkTemplate.py for Python 3.
>> >> >>      BUG: Update itkExtras.py for Python 3.
>> >> >>      BUG: Prevent Python callback addition recursion.
>> >> >>      BUG: Fix test scripts for Python 3.
>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >> >>      ENH: Allow projects to build against an external module.
>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>> >> >>      ENH: Rename _cable_ to _wrappers_.
>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>> ITKTransformMINC.
>> >> >>      COMP: Use itkSimpleNewMacro in
>> >> >> ThreadedIteratorRangePartitionerTest.
>> >> >>      ENH: Add wrapping support for building modules externally.
>> >> >>      BUG: Fix KWStyle test paths when building a module externally.
>> >> >>      ENH: Add Cuberille Remote module.
>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >> >>      DOC: Correct spelling of Continuous.
>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>> gets
>> >> >> installed."
>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
>> >> >>      ENH: Marking wrapping CMake configuration variables as
>> advanced.
>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>> have
>> >> >> override.
>> >> >>      COMP: Add wrapping for
>> AdaptiveHistogramEqualizationImageFilter.
>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>> >> >>      ENH: Remove old KWStyle build script.
>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>> found.
>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>> WRAPPING_SUBMODULE_ORDER.
>> >> >>      ENH: Install Python bindings into site-packages.
>> >> >>      ENH: Improve readability of Python site-packages path
>> detection.
>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
>> >> >> warning.
>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>> >> >>      ENH: Improves names and export of module dependencies.
>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>> >> >>      COMP: Set CMP0054 to new.
>> >> >>      BUG: Remove unused wrapping files.
>> >> >>      BUG: Do install install wrapping development files.
>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>> >> >>      BUG: Fix detection of the gold linker.
>> >> >>      BUG: Update Python package installation locations.
>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>> >> >>      COMP: Link to VTK Python when built with Kits support.
>> >> >>      BUG: Install itk_minc2.h header.
>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>> >> >>
>> >> >> Michka Popoff (9):
>> >> >>      ENH: Update to swig 3.0.7
>> >> >>      ENH: Do not link against specific Python library on OS X
>> >> >>      COMP: Fix wrapping warnings when building with
>> >> >> ITK_WRAP_IMAGE_DIMS=2
>> >> >>      COMP: Add missing wrapping for TransformBase
>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>> >> >> ImageFilterBase
>> >> >> module
>> >> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>> >> >>
>> >> >> Mikhail Isakov (1):
>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>> image
>> >> >>
>> >> >> Nick Tustison (5):
>> >> >>      BUG:  Set a default b-spline epsilon.
>> >> >>      ENH: Adding testing for closed loop.
>> >> >>      BUG:  Updating B-spline classes with the same epsilon strategy.
>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>> >> >>
>> >> >> Olivier Commowick (3):
>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
>> >> >> system
>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>> pythag
>> >> >> from V3P)
>> >> >>      BUG: Switch eigenvalues computation to double
>> >> >>
>> >> >> Pablo Hernandez-Cerdan (2):
>> >> >>      ENH: Help class for itkFlatStructuringElement with constructor
>> >> >> from
>> >> >> images.
>> >> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
>> >> >>
>> >> >> Seun Odutola (1):
>> >> >>      COMP: Fixed name clash with Apple header (check Macro), renamed
>> >> >> check
>> >> >> to Check
>> >> >>
>> >> >> Shawn Waldon (1):
>> >> >>      COMP: Set target OS X version in environment for tools using
>> >> >> compiler
>> >> >>
>> >> >> Simon Alexander (1):
>> >> >>      BUG: incorrect closest point computation
>> >> >>
>> >> >> Tobias Wood (2):
>> >> >>      BUG: LBFGSB was printing messages even with debug switched off.
>> >> >>      BUG: Removed an unguarded print statement.
>> >> >>
>> >> >> Vladimir S. FONOV (9):
>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>> >> >>      COMP: Changing the order of HDF5 library components
>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>> >> >> Transform
>> >> >>      STYLE: updated comments to properly reference LIBMINC
>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>> >> >>      MINC 2015-07-23 (c033d431)
>> >> >>      COMP: Update MINC CMake code
>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>> >> >>      MINC 2015-09-13 (95cd5374)
>> >> >>
>> >> >> Xiaoxiao Liu (1):
>> >> >>      DOC: update email address for xiaoxiao.
>> >> >>
>> >> >> Zach Williamson (10):
>> >> >>      BUG: Use correct libraries for ImageFusion tests
>> >> >>      ENH: Consolidate Library Dependencies
>> >> >>      COMP: Add a missing link to Review module
>> >> >>      COMP: Use correct linking macro in DCMTK
>> >> >>      BUG: Use correct libraries for TestKernel tests
>> >> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>> >> >>      ENH: Use new linking system macros
>> >> >>      PERF: Avoid searching private dependencies for include
>> directories
>> >> >>      COMP: Recover missing dependencies
>> >> >>      ENH: use new linking macros in Filtering module
>> >> >>
>> >> >>
>> >> >>
>> >> >> -----------------------------------------------------
>> >> >> Errors or omissions? Please fix them here:
>> >> >>
>> >> >>
>> >> >>
>> >> >>
>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>> >> >> _____________________________________
>> >> >> Powered by www.kitware.com
>> >> >>
>> >> >> Visit other Kitware open-source projects at
>> >> >> http://www.kitware.com/opensource/opensource.html
>> >> >>
>> >> >> Kitware offers ITK Training Courses, for more information visit:
>> >> >> http://www.kitware.com/products/protraining.php
>> >> >>
>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>> >> >>
>> >> >> Follow this link to subscribe/unsubscribe:
>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
>
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From skalexander at gmail.com  Wed Nov 25 16:02:21 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 21:02:21 +0000
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
 ready for testing!
In-Reply-To: <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
Message-ID: <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>

Makes sense.  At this point I am unlikely to have time to look at this
until Saturday, but have hopes for a few free hours there.

On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:

> Building git master from Nov 23rd with examples and testing enabled I get
> 14 compile errors in VS2015 debug x64. Should we coordinate our efforts in
> fixing them?
>
> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Two of the three failures look like truncation issues (like
>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>
>> The other (
>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)  is
>> less obvious.
>>
>> If I have time this evening I'll try and have a look at these.
>>
>> Is your standard test build in 32 bit ?  That might explain the
>> difference if there are some underlying type assumptions, but not obvious
>> why 2015 would trigger but not 2013.
>>
>>
>>
>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>>
>>> Ah, cool!  Here:
>>>
>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>
>>> Could you please look into the test failures?
>>>
>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>
>>> Thanks,
>>> Matt
>>>
>>>
>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>> SIMON-LAP,
>>> > (actually 3 as I wasn't sure the config was right on the first one).
>>> VS2013
>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>>> > truncation problem on the resuts.
>>> >
>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>> matt.mccormick at kitware.com>
>>> > wrote:
>>> >>
>>> >> Hi Simon,
>>> >>
>>> >> Thanks for testing.
>>> >>
>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>> >>
>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>> >>
>>> >> Are there any different flags? Could you please submit an Experimental
>>> >> build?
>>> >>
>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>>> -C
>>> >> Release
>>> >>
>>> >> from a fresh build tree.
>>> >>
>>> >> Thanks,
>>> >> Matt
>>> >>
>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>> skalexander at gmail.com>
>>> >> wrote:
>>> >> > Looks like a few problems with x64 build on visual studio 2015 - do
>>> you
>>> >> > have
>>> >> > a test machine in this configuration?
>>> >> >
>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>> matt.mccormick at kitware.com>
>>> >> > wrote:
>>> >> >>
>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>> announce
>>> >> >> that
>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>> >> >> testing!
>>> >> >>
>>> >> >> Please take this opportunity to test the new features in the
>>> release
>>> >> >> candidate.
>>> >> >>
>>> >> >>
>>> >> >> To obtain the source code,
>>> >> >>
>>> >> >>   git clone http://itk.org/ITK.git
>>> >> >>  cd ITK
>>> >> >>  git checkout -q --detach v4.9rc01
>>> >> >>
>>> >> >> For more details, please see the Git documentation [1].
>>> >> >>
>>> >> >>
>>> >> >> A few selected highlights for this release:
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * New Remote modules: the Cuberille module for smooth generation of
>>> >> >> meshes
>>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>>> module
>>> >> >> improved edge-preserving smoothing.
>>> >> >> * Build your own ITK module outside the source tree, add continuous
>>> >> >> integration testing on GitHub, and easily add Python wrapping for
>>> your
>>> >> >> C++
>>> >> >> algorithms.
>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>> >> >> standard
>>> >> >> installation
>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>> >> >> itk::VariableLengthVector?s
>>> >> >> * Generate a FlatStructuringElement from an image
>>> >> >> * Point-set registration with time-varying B-splines
>>> >> >> * Module dependencies can now be specified as public / private /
>>> >> >> compile /
>>> >> >> test
>>> >> >>
>>> >> >>
>>> >> >> Please test the release candidate and share your experiences on the
>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new module
>>> >> >> dependency specification mechanism may unearth missing
>>> dependencies for
>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>> command.
>>> >> >>
>>> >> >>
>>> >> >> An Experimental build, which demonstrates how the test suite
>>> performs
>>> >> >> on
>>> >> >> your local build system, can be submitted to the dashboard [2]
>>> with:
>>> >> >>
>>> >> >>   mkdir ../ITK-build
>>> >> >>   cd ../ITK-build
>>> >> >>   cmake ../ITK
>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>> Submit
>>> >> >>
>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>> command.
>>> >> >>
>>> >> >> Notify the mailing list if there are any unexpected failures.
>>> Testing
>>> >> >> your own applications against the RC is also appreciated.
>>> >> >>
>>> >> >>
>>> >> >> Congratulations and well done to the 35 contributors to this
>>> release.
>>> >> >> We
>>> >> >> would especially like to recognize the new contributors: Mikhail
>>> >> >> Isakov,
>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>>> >> >> Odutola,
>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>> Williamson,
>>> >> >> Luc
>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>> >> >>
>>> >> >>
>>> >> >> The final release is scheduled for mid-December.
>>> >> >>
>>> >> >>
>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>> >> >>
>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >> New Features
>>> >> >> ---------------------
>>> >> >>
>>> >> >> Wrapping improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Python 3 supported
>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>> >> >> * NumPy bridge with VisualStudio
>>> >> >> * Wrapping for the MinimalPathExtraction module
>>> >> >> * Wrapping is now installed into Python?s site-packages directory
>>> in
>>> >> >> the
>>> >> >> ?itk? package
>>> >> >> * Wrapping package size is decreased
>>> >> >> * Better package portability on Mac OSX
>>> >> >>
>>> >> >>
>>> >> >> New Remote Modules
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Cuberille
>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>> >> >> * AnisotropicDiffusionLBR
>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>> >> >>    * Web browser reproducibility:
>>> >> >> http://www.kitware.com/blog/home/post/942
>>> >> >>
>>> >> >>
>>> >> >> Core Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * External Modules can now be developed outside of the ITK source
>>> tree
>>> >> >> and
>>> >> >> on GitHub
>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>> >> >> * New utilities in itk::Math:
>>> >> >>    * AlmostEquals
>>> >> >>    * NotAlmostEquals
>>> >> >>    * ExactlyEquals
>>> >> >>    * NotExactlyEquals
>>> >> >> * New itk::NumericTraits
>>> >> >>    * IsInteger
>>> >> >>    * IsSigned
>>> >> >> * Improved C++11 support
>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>> >> >> itk::ResourceProbesCollectorBase
>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>> >> >>
>>> >> >>
>>> >> >> Filtering Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Generate a FlatStructuringElement from an image
>>> >> >> * WarpImageFilter support VectorImage?s
>>> >> >> * ConvertLabelMap supports different LabelMap types
>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>>> >> >> module
>>> >> >>
>>> >> >>
>>> >> >> Registration Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Point-set registration with time-varying B-splines
>>> >> >>
>>> >> >>
>>> >> >> Build Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Module dependencies can now be specified as public / private /
>>> >> >> compile /
>>> >> >> test
>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>> >> >> * Option to export all library symbols on Windows:
>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>> >> >> * Expat third party library is now name mangled
>>> >> >> * Many more modules can be built as shared libraries
>>> >> >> * KWStyle is automatically built and configured when tests are
>>> built
>>> >> >>
>>> >> >>
>>> >> >> Performance Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
>>> >> >> metaprogramming
>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>> >> >>    * itk::mpl::EnableIf
>>> >> >>    * itk::mpl::IsBaseOf
>>> >> >>    * itk::mpl::IsConvertible
>>> >> >>    * itk::mpl::IsNumber
>>> >> >>    * itk::mpl::IsSame
>>> >> >>    * itk::mpl::PromoteType
>>> >> >> * Image::GetPixel performance improvements
>>> >> >> * Many itk::VariableLengthVector performance improvements
>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>> >> >> * WarpImageFilter performance improvements
>>> >> >>
>>> >> >>
>>> >> >> Documentation Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>>> >> >> * ITK Software Guide improvements
>>> >> >>    * How to use Python wrapping
>>> >> >>    * How to create an ITK module
>>> >> >>    * Improvements to segmentation examples
>>> >> >>    * Expanded Canny edge detection example
>>> >> >>    * Expanded tree container example
>>> >> >>
>>> >> >>
>>> >> >> Third Party Library Updates
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * FFTW updated to latest upstream
>>> >> >> * Build with recent OpenCV 2 and 3
>>> >> >> * Build with the latest VTK
>>> >> >> * PNG update to the latest upstream
>>> >> >> * GDCM updated to the latest upstream
>>> >> >> * KWSys updated to the latest upstream
>>> >> >> * MINC updated to the latest upstream
>>> >> >> * SWIG updated to the latest upstream
>>> >> >> * Third party PNG and MINC are now Git subtrees
>>> >> >>
>>> >> >>
>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>> >> >>
>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>> >> >>
>>> >> >>
>>> >> >> Improved code coverage -- we are at 84.9%!
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >>
>>> >> >> * *Lots* of important bug fixes
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >>
>>> >> >> * And much more! See details in the log below.
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >> Changes from v4.8.0..v4.9rc01
>>> >> >> --------------------------------------------
>>> >> >>
>>> >> >>
>>> >> >> Abhishek Tiwari (1):
>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>> >> >>
>>> >> >> Adam Snyder (1):
>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>> >> >>
>>> >> >> Alexander Leinoff (6):
>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>> >> >> itkMath.h
>>> >> >>      COMP: Removes floating-point equality checks
>>> >> >>      ENH: COMP: Adds support for complex values to
>>> Math::AlmostEquals
>>> >> >>      ENH: Updates fftw dependency
>>> >> >>
>>> >> >> Arnaud Gelas (5):
>>> >> >>      COMP: fix warning (unused local typedef)
>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>> >> >>      DOC: add doxgen documentation for
>>> >> >> BinaryImageToLevelSetImageAdaptor
>>> >> >>      ENH: add tests to exercise
>>> itk::ThreadedIteratorRangePartitioner
>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>> >> >>
>>> >> >> Betsy McPhail (1):
>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>> >> >>
>>> >> >> Bill Hoffman (2):
>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>> >> >> installed.
>>> >> >>
>>> >> >> Bill Lorensen (4):
>>> >> >>      COMP: VTkGlue linker errors
>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>> >> >>      ENH: Bump tag for wiki examples
>>> >> >>      ENH: Better layout strategy
>>> >> >>
>>> >> >> Brad King (3):
>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>> project
>>> >> >>
>>> >> >> Bradley Lowekamp (31):
>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>> construction
>>> >> >>      ENH: Enable base classes for templates of landmark initializer
>>> >> >>      STYLE: Use "Swap" for ITK member name
>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>> >> >>      BUG: Fix computation of Eigen analysis
>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>> >> >>      ENH: Adding initial update script from used libpng version.
>>> >> >>      ENH: removing non-subtree files for itkpng
>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>> >> >>      ENH: Update libpng update script for v1.6.9
>>> >> >>      BUG: Use ParameterValueType for computation of landmark affine
>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>> >> >>      ENH: Update itkpng name mangling
>>> >> >>      BUG: Use const pointer in Set method for constant
>>> ReferenceImage
>>> >> >> ivar
>>> >> >>      BUG: Increase tolerance for
>>> PhysicsBasedNonRigidRegistrationMethod
>>> >> >>      BUG: Demonstrate side effect on registration due to
>>> BSplineScatter
>>> >> >> change
>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>> >> >> ImageFilterBase
>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>> construction
>>> >> >>      BUG: Use const pointer in Set method for constant
>>> ReferenceImage
>>> >> >> ivar
>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>> MovingHistogram
>>> >> >> base
>>> >> >>      COMP: address sign unsigned comparison warning
>>> >> >>      COMP: Address signed unsigned comparison warning
>>> >> >>      COMP: Address unused member variable and methods in anonymous
>>> ns
>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>>> >> >> range
>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>>> >> >>      BUG: Reduce number of targets with MSVC
>>> >> >>
>>> >> >> Davis Vigneault (7):
>>> >> >>      DOC: Minor improvements to segmentation examples.
>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>> >> >>      DOC: Expanded TreeContainer Example
>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>> >> >>
>>> >> >> D?enan Zuki? (1):
>>> >> >>      STYLE: better formatting of the "usage" message
>>> >> >>
>>> >> >> Eugene Prilepin (1):
>>> >> >>      BUG: Fix a template name formation in python wrappings
>>> >> >>
>>> >> >> Floris Berendsen (1):
>>> >> >>      STYLE: Improve naming conventions in comments.
>>> >> >>
>>> >> >> Hans Johnson (29):
>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>> >> >>      BUG: FixedParameters should be double precision
>>> >> >>      STYLE: Minor code style issues for MGHIO
>>> >> >>      COMP: Update to version for WikiExamples
>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>> >> >>      ENH: Update MGHIO to be shared lib
>>> >> >>      ENH: Provide consistent floating point comparisons
>>> >> >>      BUG: Fix MGHIO to fix write failures
>>> >> >>      PERF: Remove floating point as sentinal value
>>> >> >>      COMP: Const correctness needs to be maintained
>>> >> >>      BUG: Preserve backwards compatibility
>>> >> >>      DOC: Provide consistent naming in comments
>>> >> >>      ENH: Conversion between transform type tolerance
>>> >> >>      STYLE: Prefer initialization to assignment
>>> >> >>      ENH: Missing ITK_OVERRIDE
>>> >> >>      COMP: Need to propagate ITKGDCM
>>> >> >>      COMP: Need to propagate ITKGDCM
>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>> >> >>      STYLE: Minor code style issues for MGHIO
>>> >> >>      COMP: Update to version for WikiExamples
>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>> >> >>      ENH: Update MGHIO to be shared lib
>>> >> >>      BUG: Fix MGHIO to fix write failures
>>> >> >>      ENH: C++11 allows for rigorous =delete
>>> >> >>      COMP: Remove unnecessary failing assert test
>>> >> >>      ENH: Ignore internal files for the Clion editor
>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>> >> >>      BUG: In configuration test need to mirror code
>>> >> >>
>>> >> >> Hyun Jae Kang (27):
>>> >> >>      BUG: Remove std::cout calls from class
>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>> >> >>      BUG: Update python example codes for ImageRegistration
>>> >> >>      BUG: Retrieve the missed wrap file
>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>> file
>>> >> >> header.
>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>> >> >> libraries
>>> >> >>      BUG: Fixed older XCode linking error
>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>> >> >>      BUG: Remove std::cout calls from class
>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>> file
>>> >> >> header.
>>> >> >>      BUG: Fixed older XCode linking error
>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>> autological-compare
>>> >> >> warning.
>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>> >> >>      COMP: Apply latest version of KWStyle
>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>> function
>>> >> >>      ENH: Update the Report() function of
>>> >> >> itkResourceProbesCollectorBase
>>> >> >>      COMP: Fix data-conversion warning message on itkResourceProbe
>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>> >> >>      COMP: Fix data-conversion warning messages
>>> >> >>
>>> >> >> Jon Haitz Legarreta (6):
>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>> >> >>      BUG: Fix compilation issues for
>>> StatisticsUniqueLabelMapFilterTest
>>> >> >>      BUG: Fix comparison issues for
>>> itkStatisticsUniqueLabelMapFilter
>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>> >> >>      ENH: Improve code coverage for
>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>> >> >>
>>> >> >> Julien Michel (1):
>>> >> >>      ENH: Support of VectorImage as template parameters for
>>> >> >> WarpImageFilter
>>> >> >>
>>> >> >> Junjie Bai (2):
>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>> >> >>      BUG: LabelObject CopyAttribute support different LabelObject
>>> type
>>> >> >>
>>> >> >> KWSys Robot (4):
>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>> >> >>
>>> >> >> LIBPNG Upstream (2):
>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>> >> >>
>>> >> >> Laurentiu Nicola (2):
>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>> >> >>
>>> >> >> Luc Hermitte (8):
>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>> >> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>> >> >>      COMP: Fix signed/unsigned warnings
>>> >> >>      BUG: std::copy/fill on empty VLV
>>> >> >>
>>> >> >> Lucas Gandel (4):
>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>> >> >>
>>> >> >> Mathieu Malaterre (1):
>>> >> >>      BUG: Name mangle the included expat third party library.
>>> >> >>
>>> >> >> Matthew McCormick (94):
>>> >> >>      ENH: Change itkSystemInformationTest to
>>> itkCMakeConfigurationTest.
>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>> >> >>      BUG: Remove std::cout calls from classes.
>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>> >> >> ImageToVTKImageFilter.
>>> >> >>      COMP: Add link interface specification for wrapping
>>> >> >> target_link_libraries.
>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>> >> >>      COMP: Remove unknown doxygen command in
>>> AnisotropicDiffusionLBR.
>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>> 14.04.
>>> >> >>      ENH: Use Windows binaries for CastXML.
>>> >> >>      ENH: Add better scoping in igenerator.py.
>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>> >> >>      ENH: Add better scoping to idx.py.
>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>> >> >>      DOC: Correct spelling of Continuous.
>>> >> >>      ENH: Add more progress information to IterativeClosestPoint2.
>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>> >> >>      BUG: Use CastXML binary built in Release.
>>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>>> >> >>      COMP: Set CMP0054 to new.
>>> >> >>      COMP: Address line length too long for Software Guide.
>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>> >> >>      BUG: Prevent Python callback addition recursion.
>>> >> >>      BUG: Fix test scripts for Python 3.
>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>> >> >>      ENH: Allow projects to build against an external module.
>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>> ITKTransformMINC.
>>> >> >>      COMP: Use itkSimpleNewMacro in
>>> >> >> ThreadedIteratorRangePartitionerTest.
>>> >> >>      ENH: Add wrapping support for building modules externally.
>>> >> >>      BUG: Fix KWStyle test paths when building a module externally.
>>> >> >>      ENH: Add Cuberille Remote module.
>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>> >> >>      DOC: Correct spelling of Continuous.
>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>>> gets
>>> >> >> installed."
>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>> LabelMapTypes"
>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>> advanced.
>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>>> have
>>> >> >> override.
>>> >> >>      COMP: Add wrapping for
>>> AdaptiveHistogramEqualizationImageFilter.
>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>> >> >>      ENH: Remove old KWStyle build script.
>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>> found.
>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>> WRAPPING_SUBMODULE_ORDER.
>>> >> >>      ENH: Install Python bindings into site-packages.
>>> >> >>      ENH: Improve readability of Python site-packages path
>>> detection.
>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>> expression
>>> >> >> warning.
>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>> >> >>      ENH: Improves names and export of module dependencies.
>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>> >> >>      COMP: Set CMP0054 to new.
>>> >> >>      BUG: Remove unused wrapping files.
>>> >> >>      BUG: Do install install wrapping development files.
>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>> >> >>      BUG: Fix detection of the gold linker.
>>> >> >>      BUG: Update Python package installation locations.
>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>> >> >>      BUG: Install itk_minc2.h header.
>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>> >> >>
>>> >> >> Michka Popoff (9):
>>> >> >>      ENH: Update to swig 3.0.7
>>> >> >>      ENH: Do not link against specific Python library on OS X
>>> >> >>      COMP: Fix wrapping warnings when building with
>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>> >> >>      COMP: Add missing wrapping for TransformBase
>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>> wrapping
>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>> >> >> ImageFilterBase
>>> >> >> module
>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>> wrapping
>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>> >> >>
>>> >> >> Mikhail Isakov (1):
>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>>> image
>>> >> >>
>>> >> >> Nick Tustison (5):
>>> >> >>      BUG:  Set a default b-spline epsilon.
>>> >> >>      ENH: Adding testing for closed loop.
>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>> strategy.
>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>> >> >>
>>> >> >> Olivier Commowick (3):
>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>> eigen
>>> >> >> system
>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>> pythag
>>> >> >> from V3P)
>>> >> >>      BUG: Switch eigenvalues computation to double
>>> >> >>
>>> >> >> Pablo Hernandez-Cerdan (2):
>>> >> >>      ENH: Help class for itkFlatStructuringElement with constructor
>>> >> >> from
>>> >> >> images.
>>> >> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
>>> >> >>
>>> >> >> Seun Odutola (1):
>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>> renamed
>>> >> >> check
>>> >> >> to Check
>>> >> >>
>>> >> >> Shawn Waldon (1):
>>> >> >>      COMP: Set target OS X version in environment for tools using
>>> >> >> compiler
>>> >> >>
>>> >> >> Simon Alexander (1):
>>> >> >>      BUG: incorrect closest point computation
>>> >> >>
>>> >> >> Tobias Wood (2):
>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>> off.
>>> >> >>      BUG: Removed an unguarded print statement.
>>> >> >>
>>> >> >> Vladimir S. FONOV (9):
>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>> >> >>      COMP: Changing the order of HDF5 library components
>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>> >> >> Transform
>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>> >> >>      MINC 2015-07-23 (c033d431)
>>> >> >>      COMP: Update MINC CMake code
>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>> >> >>      MINC 2015-09-13 (95cd5374)
>>> >> >>
>>> >> >> Xiaoxiao Liu (1):
>>> >> >>      DOC: update email address for xiaoxiao.
>>> >> >>
>>> >> >> Zach Williamson (10):
>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>> >> >>      ENH: Consolidate Library Dependencies
>>> >> >>      COMP: Add a missing link to Review module
>>> >> >>      COMP: Use correct linking macro in DCMTK
>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>> >> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>>> >> >>      ENH: Use new linking system macros
>>> >> >>      PERF: Avoid searching private dependencies for include
>>> directories
>>> >> >>      COMP: Recover missing dependencies
>>> >> >>      ENH: use new linking macros in Filtering module
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >> -----------------------------------------------------
>>> >> >> Errors or omissions? Please fix them here:
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >>
>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>> >> >> _____________________________________
>>> >> >> Powered by www.kitware.com
>>> >> >>
>>> >> >> Visit other Kitware open-source projects at
>>> >> >> http://www.kitware.com/opensource/opensource.html
>>> >> >>
>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>> >> >> http://www.kitware.com/products/protraining.php
>>> >> >>
>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>> >> >>
>>> >> >> Follow this link to subscribe/unsubscribe:
>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>
>>
>> _______________________________________________
>
>
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>>
> http://kitware.com/products/protraining.php
>
>
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>>
> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>>
>
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From dzenanz at gmail.com  Wed Nov 25 16:05:50 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 25 Nov 2015 16:05:50 -0500
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
 ready for testing!
In-Reply-To: <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
Message-ID: <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>

OK I will work on it for an hour or two now, and I will make a branch and
push it to Gerrit so whoever wants can pick up from there and keep updating
it.

On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
wrote:

> Makes sense.  At this point I am unlikely to have time to look at this
> until Saturday, but have hopes for a few free hours there.
>
> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> Building git master from Nov 23rd with examples and testing enabled I get
>> 14 compile errors in VS2015 debug x64. Should we coordinate our efforts in
>> fixing them?
>>
>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>
>>> Two of the three failures look like truncation issues (like
>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>
>>> The other (
>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>  is less obvious.
>>>
>>> If I have time this evening I'll try and have a look at these.
>>>
>>> Is your standard test build in 32 bit ?  That might explain the
>>> difference if there are some underlying type assumptions, but not obvious
>>> why 2015 would trigger but not 2013.
>>>
>>>
>>>
>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
>>> wrote:
>>>
>>>> Ah, cool!  Here:
>>>>
>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>
>>>> Could you please look into the test failures?
>>>>
>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>
>>>> Thanks,
>>>> Matt
>>>>
>>>>
>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>> skalexander at gmail.com> wrote:
>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>> SIMON-LAP,
>>>> > (actually 3 as I wasn't sure the config was right on the first one).
>>>> VS2013
>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>>>> > truncation problem on the resuts.
>>>> >
>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>> matt.mccormick at kitware.com>
>>>> > wrote:
>>>> >>
>>>> >> Hi Simon,
>>>> >>
>>>> >> Thanks for testing.
>>>> >>
>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>> >>
>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>> >>
>>>> >> Are there any different flags? Could you please submit an
>>>> Experimental
>>>> >> build?
>>>> >>
>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>> Submit -C
>>>> >> Release
>>>> >>
>>>> >> from a fresh build tree.
>>>> >>
>>>> >> Thanks,
>>>> >> Matt
>>>> >>
>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>> skalexander at gmail.com>
>>>> >> wrote:
>>>> >> > Looks like a few problems with x64 build on visual studio 2015 -
>>>> do you
>>>> >> > have
>>>> >> > a test machine in this configuration?
>>>> >> >
>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>> matt.mccormick at kitware.com>
>>>> >> > wrote:
>>>> >> >>
>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>> announce
>>>> >> >> that
>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>>> >> >> testing!
>>>> >> >>
>>>> >> >> Please take this opportunity to test the new features in the
>>>> release
>>>> >> >> candidate.
>>>> >> >>
>>>> >> >>
>>>> >> >> To obtain the source code,
>>>> >> >>
>>>> >> >>   git clone http://itk.org/ITK.git
>>>> >> >>  cd ITK
>>>> >> >>  git checkout -q --detach v4.9rc01
>>>> >> >>
>>>> >> >> For more details, please see the Git documentation [1].
>>>> >> >>
>>>> >> >>
>>>> >> >> A few selected highlights for this release:
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * New Remote modules: the Cuberille module for smooth generation
>>>> of
>>>> >> >> meshes
>>>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>>>> module
>>>> >> >> improved edge-preserving smoothing.
>>>> >> >> * Build your own ITK module outside the source tree, add
>>>> continuous
>>>> >> >> integration testing on GitHub, and easily add Python wrapping for
>>>> your
>>>> >> >> C++
>>>> >> >> algorithms.
>>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>>> >> >> standard
>>>> >> >> installation
>>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>>> >> >> itk::VariableLengthVector?s
>>>> >> >> * Generate a FlatStructuringElement from an image
>>>> >> >> * Point-set registration with time-varying B-splines
>>>> >> >> * Module dependencies can now be specified as public / private /
>>>> >> >> compile /
>>>> >> >> test
>>>> >> >>
>>>> >> >>
>>>> >> >> Please test the release candidate and share your experiences on
>>>> the
>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>> module
>>>> >> >> dependency specification mechanism may unearth missing
>>>> dependencies for
>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>> command.
>>>> >> >>
>>>> >> >>
>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>> performs
>>>> >> >> on
>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>> with:
>>>> >> >>
>>>> >> >>   mkdir ../ITK-build
>>>> >> >>   cd ../ITK-build
>>>> >> >>   cmake ../ITK
>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>> Submit
>>>> >> >>
>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>> command.
>>>> >> >>
>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>> Testing
>>>> >> >> your own applications against the RC is also appreciated.
>>>> >> >>
>>>> >> >>
>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>> release.
>>>> >> >> We
>>>> >> >> would especially like to recognize the new contributors: Mikhail
>>>> >> >> Isakov,
>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>>>> >> >> Odutola,
>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>> Williamson,
>>>> >> >> Luc
>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>> >> >>
>>>> >> >>
>>>> >> >> The final release is scheduled for mid-December.
>>>> >> >>
>>>> >> >>
>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>> >> >>
>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >> New Features
>>>> >> >> ---------------------
>>>> >> >>
>>>> >> >> Wrapping improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Python 3 supported
>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>> >> >> * NumPy bridge with VisualStudio
>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>> >> >> * Wrapping is now installed into Python?s site-packages directory
>>>> in
>>>> >> >> the
>>>> >> >> ?itk? package
>>>> >> >> * Wrapping package size is decreased
>>>> >> >> * Better package portability on Mac OSX
>>>> >> >>
>>>> >> >>
>>>> >> >> New Remote Modules
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Cuberille
>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>> >> >> * AnisotropicDiffusionLBR
>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>> >> >>    * Web browser reproducibility:
>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>> >> >>
>>>> >> >>
>>>> >> >> Core Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * External Modules can now be developed outside of the ITK source
>>>> tree
>>>> >> >> and
>>>> >> >> on GitHub
>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>> >> >> * New utilities in itk::Math:
>>>> >> >>    * AlmostEquals
>>>> >> >>    * NotAlmostEquals
>>>> >> >>    * ExactlyEquals
>>>> >> >>    * NotExactlyEquals
>>>> >> >> * New itk::NumericTraits
>>>> >> >>    * IsInteger
>>>> >> >>    * IsSigned
>>>> >> >> * Improved C++11 support
>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>> >> >> itk::ResourceProbesCollectorBase
>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>> >> >>
>>>> >> >>
>>>> >> >> Filtering Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Generate a FlatStructuringElement from an image
>>>> >> >> * WarpImageFilter support VectorImage?s
>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>>>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>>>> >> >> module
>>>> >> >>
>>>> >> >>
>>>> >> >> Registration Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Point-set registration with time-varying B-splines
>>>> >> >>
>>>> >> >>
>>>> >> >> Build Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Module dependencies can now be specified as public / private /
>>>> >> >> compile /
>>>> >> >> test
>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>> >> >> * Option to export all library symbols on Windows:
>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>> >> >> * Expat third party library is now name mangled
>>>> >> >> * Many more modules can be built as shared libraries
>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>> built
>>>> >> >>
>>>> >> >>
>>>> >> >> Performance Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members
>>>> for
>>>> >> >> metaprogramming
>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>> >> >>    * itk::mpl::EnableIf
>>>> >> >>    * itk::mpl::IsBaseOf
>>>> >> >>    * itk::mpl::IsConvertible
>>>> >> >>    * itk::mpl::IsNumber
>>>> >> >>    * itk::mpl::IsSame
>>>> >> >>    * itk::mpl::PromoteType
>>>> >> >> * Image::GetPixel performance improvements
>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>> >> >> * WarpImageFilter performance improvements
>>>> >> >>
>>>> >> >>
>>>> >> >> Documentation Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>>>> >> >> * ITK Software Guide improvements
>>>> >> >>    * How to use Python wrapping
>>>> >> >>    * How to create an ITK module
>>>> >> >>    * Improvements to segmentation examples
>>>> >> >>    * Expanded Canny edge detection example
>>>> >> >>    * Expanded tree container example
>>>> >> >>
>>>> >> >>
>>>> >> >> Third Party Library Updates
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * FFTW updated to latest upstream
>>>> >> >> * Build with recent OpenCV 2 and 3
>>>> >> >> * Build with the latest VTK
>>>> >> >> * PNG update to the latest upstream
>>>> >> >> * GDCM updated to the latest upstream
>>>> >> >> * KWSys updated to the latest upstream
>>>> >> >> * MINC updated to the latest upstream
>>>> >> >> * SWIG updated to the latest upstream
>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>> >> >>
>>>> >> >>
>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>> >> >>
>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>>> >> >>
>>>> >> >>
>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >>
>>>> >> >> * *Lots* of important bug fixes
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >>
>>>> >> >> * And much more! See details in the log below.
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>> >> >> --------------------------------------------
>>>> >> >>
>>>> >> >>
>>>> >> >> Abhishek Tiwari (1):
>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>> >> >>
>>>> >> >> Adam Snyder (1):
>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>> >> >>
>>>> >> >> Alexander Leinoff (6):
>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>> >> >> itkMath.h
>>>> >> >>      COMP: Removes floating-point equality checks
>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>> Math::AlmostEquals
>>>> >> >>      ENH: Updates fftw dependency
>>>> >> >>
>>>> >> >> Arnaud Gelas (5):
>>>> >> >>      COMP: fix warning (unused local typedef)
>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>> >> >>      DOC: add doxgen documentation for
>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>> >> >>      ENH: add tests to exercise
>>>> itk::ThreadedIteratorRangePartitioner
>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>> >> >>
>>>> >> >> Betsy McPhail (1):
>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>> >> >>
>>>> >> >> Bill Hoffman (2):
>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>> >> >> installed.
>>>> >> >>
>>>> >> >> Bill Lorensen (4):
>>>> >> >>      COMP: VTkGlue linker errors
>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>> >> >>      ENH: Bump tag for wiki examples
>>>> >> >>      ENH: Better layout strategy
>>>> >> >>
>>>> >> >> Brad King (3):
>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>> project
>>>> >> >>
>>>> >> >> Bradley Lowekamp (31):
>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>> construction
>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>> initializer
>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>> >> >>      ENH: Adding initial update script from used libpng version.
>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>> affine
>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>> >> >>      ENH: Update itkpng name mangling
>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>> ReferenceImage
>>>> >> >> ivar
>>>> >> >>      BUG: Increase tolerance for
>>>> PhysicsBasedNonRigidRegistrationMethod
>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>> BSplineScatter
>>>> >> >> change
>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>> >> >> ImageFilterBase
>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>> construction
>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>> ReferenceImage
>>>> >> >> ivar
>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>> MovingHistogram
>>>> >> >> base
>>>> >> >>      COMP: address sign unsigned comparison warning
>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>> >> >>      COMP: Address unused member variable and methods in
>>>> anonymous ns
>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>>>> >> >> range
>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>> >> >>
>>>> >> >> Davis Vigneault (7):
>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>> >> >>      DOC: Expanded TreeContainer Example
>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>> >> >>
>>>> >> >> D?enan Zuki? (1):
>>>> >> >>      STYLE: better formatting of the "usage" message
>>>> >> >>
>>>> >> >> Eugene Prilepin (1):
>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>> >> >>
>>>> >> >> Floris Berendsen (1):
>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>> >> >>
>>>> >> >> Hans Johnson (29):
>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>> >> >>      BUG: FixedParameters should be double precision
>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>> >> >>      COMP: Update to version for WikiExamples
>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>> >> >>      PERF: Remove floating point as sentinal value
>>>> >> >>      COMP: Const correctness needs to be maintained
>>>> >> >>      BUG: Preserve backwards compatibility
>>>> >> >>      DOC: Provide consistent naming in comments
>>>> >> >>      ENH: Conversion between transform type tolerance
>>>> >> >>      STYLE: Prefer initialization to assignment
>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>> >> >>      COMP: Update to version for WikiExamples
>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>> >> >>      BUG: In configuration test need to mirror code
>>>> >> >>
>>>> >> >> Hyun Jae Kang (27):
>>>> >> >>      BUG: Remove std::cout calls from class
>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>> >> >>      BUG: Retrieve the missed wrap file
>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>> file
>>>> >> >> header.
>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>> >> >> libraries
>>>> >> >>      BUG: Fixed older XCode linking error
>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>>> >> >>      BUG: Remove std::cout calls from class
>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>> file
>>>> >> >> header.
>>>> >> >>      BUG: Fixed older XCode linking error
>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>> autological-compare
>>>> >> >> warning.
>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>> >> >>      COMP: Apply latest version of KWStyle
>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>> function
>>>> >> >>      ENH: Update the Report() function of
>>>> >> >> itkResourceProbesCollectorBase
>>>> >> >>      COMP: Fix data-conversion warning message on itkResourceProbe
>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>> >> >>      COMP: Fix data-conversion warning messages
>>>> >> >>
>>>> >> >> Jon Haitz Legarreta (6):
>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>> >> >>      BUG: Fix compilation issues for
>>>> StatisticsUniqueLabelMapFilterTest
>>>> >> >>      BUG: Fix comparison issues for
>>>> itkStatisticsUniqueLabelMapFilter
>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>> >> >>      ENH: Improve code coverage for
>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>> >> >>
>>>> >> >> Julien Michel (1):
>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>> >> >> WarpImageFilter
>>>> >> >>
>>>> >> >> Junjie Bai (2):
>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>> >> >>      BUG: LabelObject CopyAttribute support different LabelObject
>>>> type
>>>> >> >>
>>>> >> >> KWSys Robot (4):
>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>> >> >>
>>>> >> >> LIBPNG Upstream (2):
>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>> >> >>
>>>> >> >> Laurentiu Nicola (2):
>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>>> >> >>
>>>> >> >> Luc Hermitte (8):
>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>> >> >>
>>>> >> >> Lucas Gandel (4):
>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>> Module
>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>> >> >>
>>>> >> >> Mathieu Malaterre (1):
>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>> >> >>
>>>> >> >> Matthew McCormick (94):
>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>> itkCMakeConfigurationTest.
>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>> >> >> ImageToVTKImageFilter.
>>>> >> >>      COMP: Add link interface specification for wrapping
>>>> >> >> target_link_libraries.
>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>>> >> >>      COMP: Remove unknown doxygen command in
>>>> AnisotropicDiffusionLBR.
>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>> 14.04.
>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>> >> >>      ENH: Add better scoping to idx.py.
>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>> >> >>      DOC: Correct spelling of Continuous.
>>>> >> >>      ENH: Add more progress information to IterativeClosestPoint2.
>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>>>> >> >>      COMP: Set CMP0054 to new.
>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>> >> >>      ENH: Allow projects to build against an external module.
>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>> ITKTransformMINC.
>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>> externally.
>>>> >> >>      ENH: Add Cuberille Remote module.
>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>> >> >>      DOC: Correct spelling of Continuous.
>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>>>> gets
>>>> >> >> installed."
>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>> LabelMapTypes"
>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>> advanced.
>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>>>> have
>>>> >> >> override.
>>>> >> >>      COMP: Add wrapping for
>>>> AdaptiveHistogramEqualizationImageFilter.
>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>> >> >>      ENH: Remove old KWStyle build script.
>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>> found.
>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>> WRAPPING_SUBMODULE_ORDER.
>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>> detection.
>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>> expression
>>>> >> >> warning.
>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>>> >> >>      COMP: Set CMP0054 to new.
>>>> >> >>      BUG: Remove unused wrapping files.
>>>> >> >>      BUG: Do install install wrapping development files.
>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>> >> >>      BUG: Fix detection of the gold linker.
>>>> >> >>      BUG: Update Python package installation locations.
>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>> >> >>      BUG: Install itk_minc2.h header.
>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>> >> >>
>>>> >> >> Michka Popoff (9):
>>>> >> >>      ENH: Update to swig 3.0.7
>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>> wrapping
>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>> >> >> ImageFilterBase
>>>> >> >> module
>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>> wrapping
>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>> >> >>
>>>> >> >> Mikhail Isakov (1):
>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>>>> image
>>>> >> >>
>>>> >> >> Nick Tustison (5):
>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>> >> >>      ENH: Adding testing for closed loop.
>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>> strategy.
>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>> >> >>
>>>> >> >> Olivier Commowick (3):
>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>> eigen
>>>> >> >> system
>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>>> pythag
>>>> >> >> from V3P)
>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>> >> >>
>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>> constructor
>>>> >> >> from
>>>> >> >> images.
>>>> >> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
>>>> >> >>
>>>> >> >> Seun Odutola (1):
>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>> renamed
>>>> >> >> check
>>>> >> >> to Check
>>>> >> >>
>>>> >> >> Shawn Waldon (1):
>>>> >> >>      COMP: Set target OS X version in environment for tools using
>>>> >> >> compiler
>>>> >> >>
>>>> >> >> Simon Alexander (1):
>>>> >> >>      BUG: incorrect closest point computation
>>>> >> >>
>>>> >> >> Tobias Wood (2):
>>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>>> off.
>>>> >> >>      BUG: Removed an unguarded print statement.
>>>> >> >>
>>>> >> >> Vladimir S. FONOV (9):
>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>> >> >> Transform
>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>> >> >>      COMP: Update MINC CMake code
>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>> >> >>
>>>> >> >> Xiaoxiao Liu (1):
>>>> >> >>      DOC: update email address for xiaoxiao.
>>>> >> >>
>>>> >> >> Zach Williamson (10):
>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>> >> >>      ENH: Consolidate Library Dependencies
>>>> >> >>      COMP: Add a missing link to Review module
>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>> >> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>>>> >> >>      ENH: Use new linking system macros
>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>> directories
>>>> >> >>      COMP: Recover missing dependencies
>>>> >> >>      ENH: use new linking macros in Filtering module
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >> -----------------------------------------------------
>>>> >> >> Errors or omissions? Please fix them here:
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>> >> >> _____________________________________
>>>> >> >> Powered by www.kitware.com
>>>> >> >>
>>>> >> >> Visit other Kitware open-source projects at
>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>> >> >>
>>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>>> >> >> http://www.kitware.com/products/protraining.php
>>>> >> >>
>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>> >> >>
>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>
>>>
>>> _______________________________________________
>>
>>
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>>
>> http://kitware.com/products/protraining.php
>>
>>
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>>
>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>
>>>
>>
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From skalexander at gmail.com  Wed Nov 25 16:08:18 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 21:08:18 +0000
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
 ready for testing!
In-Reply-To: <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
 <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
Message-ID: <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>

Perfect.  I'm under a deadline that is likely to eat the rest of the week
but if that clears up I'll try and jump in earlier.

On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:

> OK I will work on it for an hour or two now, and I will make a branch and
> push it to Gerrit so whoever wants can pick up from there and keep updating
> it.
>
> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Makes sense.  At this point I am unlikely to have time to look at this
>> until Saturday, but have hopes for a few free hours there.
>>
>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> Building git master from Nov 23rd with examples and testing enabled I
>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>> in fixing them?
>>>
>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com
>>> > wrote:
>>>
>>>> Two of the three failures look like truncation issues (like
>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>
>>>> The other (
>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>  is less obvious.
>>>>
>>>> If I have time this evening I'll try and have a look at these.
>>>>
>>>> Is your standard test build in 32 bit ?  That might explain the
>>>> difference if there are some underlying type assumptions, but not obvious
>>>> why 2015 would trigger but not 2013.
>>>>
>>>>
>>>>
>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
>>>> wrote:
>>>>
>>>>> Ah, cool!  Here:
>>>>>
>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>
>>>>> Could you please look into the test failures?
>>>>>
>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>
>>>>> Thanks,
>>>>> Matt
>>>>>
>>>>>
>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>> skalexander at gmail.com> wrote:
>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>> SIMON-LAP,
>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>> one).  VS2013
>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>>>>> > truncation problem on the resuts.
>>>>> >
>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>> matt.mccormick at kitware.com>
>>>>> > wrote:
>>>>> >>
>>>>> >> Hi Simon,
>>>>> >>
>>>>> >> Thanks for testing.
>>>>> >>
>>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>>> >>
>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>> >>
>>>>> >> Are there any different flags? Could you please submit an
>>>>> Experimental
>>>>> >> build?
>>>>> >>
>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>> Submit -C
>>>>> >> Release
>>>>> >>
>>>>> >> from a fresh build tree.
>>>>> >>
>>>>> >> Thanks,
>>>>> >> Matt
>>>>> >>
>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>> skalexander at gmail.com>
>>>>> >> wrote:
>>>>> >> > Looks like a few problems with x64 build on visual studio 2015 -
>>>>> do you
>>>>> >> > have
>>>>> >> > a test machine in this configuration?
>>>>> >> >
>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>> matt.mccormick at kitware.com>
>>>>> >> > wrote:
>>>>> >> >>
>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>> announce
>>>>> >> >> that
>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>>>> >> >> testing!
>>>>> >> >>
>>>>> >> >> Please take this opportunity to test the new features in the
>>>>> release
>>>>> >> >> candidate.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> To obtain the source code,
>>>>> >> >>
>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>> >> >>  cd ITK
>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>> >> >>
>>>>> >> >> For more details, please see the Git documentation [1].
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> A few selected highlights for this release:
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * New Remote modules: the Cuberille module for smooth generation
>>>>> of
>>>>> >> >> meshes
>>>>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>>>>> module
>>>>> >> >> improved edge-preserving smoothing.
>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>> continuous
>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>> for your
>>>>> >> >> C++
>>>>> >> >> algorithms.
>>>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>>>> >> >> standard
>>>>> >> >> installation
>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>>>> >> >> itk::VariableLengthVector?s
>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>> >> >> compile /
>>>>> >> >> test
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Please test the release candidate and share your experiences on
>>>>> the
>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>> module
>>>>> >> >> dependency specification mechanism may unearth missing
>>>>> dependencies for
>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>> command.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>> performs
>>>>> >> >> on
>>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>>> with:
>>>>> >> >>
>>>>> >> >>   mkdir ../ITK-build
>>>>> >> >>   cd ../ITK-build
>>>>> >> >>   cmake ../ITK
>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>> Submit
>>>>> >> >>
>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>> command.
>>>>> >> >>
>>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>>> Testing
>>>>> >> >> your own applications against the RC is also appreciated.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>> release.
>>>>> >> >> We
>>>>> >> >> would especially like to recognize the new contributors: Mikhail
>>>>> >> >> Isakov,
>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>>>>> >> >> Odutola,
>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>> Williamson,
>>>>> >> >> Luc
>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> The final release is scheduled for mid-December.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>> >> >>
>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> New Features
>>>>> >> >> ---------------------
>>>>> >> >>
>>>>> >> >> Wrapping improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Python 3 supported
>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>> >> >> * NumPy bridge with VisualStudio
>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>> directory in
>>>>> >> >> the
>>>>> >> >> ?itk? package
>>>>> >> >> * Wrapping package size is decreased
>>>>> >> >> * Better package portability on Mac OSX
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> New Remote Modules
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Cuberille
>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>>> >> >> * AnisotropicDiffusionLBR
>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>>> >> >>    * Web browser reproducibility:
>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Core Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>> source tree
>>>>> >> >> and
>>>>> >> >> on GitHub
>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>> >> >> * New utilities in itk::Math:
>>>>> >> >>    * AlmostEquals
>>>>> >> >>    * NotAlmostEquals
>>>>> >> >>    * ExactlyEquals
>>>>> >> >>    * NotExactlyEquals
>>>>> >> >> * New itk::NumericTraits
>>>>> >> >>    * IsInteger
>>>>> >> >>    * IsSigned
>>>>> >> >> * Improved C++11 support
>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Filtering Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>> module
>>>>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>>>>> >> >> module
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Registration Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Build Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>> >> >> compile /
>>>>> >> >> test
>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>> >> >> * Option to export all library symbols on Windows:
>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>> >> >> * Expat third party library is now name mangled
>>>>> >> >> * Many more modules can be built as shared libraries
>>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>>> built
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Performance Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members
>>>>> for
>>>>> >> >> metaprogramming
>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>> >> >>    * itk::mpl::EnableIf
>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>> >> >>    * itk::mpl::IsConvertible
>>>>> >> >>    * itk::mpl::IsNumber
>>>>> >> >>    * itk::mpl::IsSame
>>>>> >> >>    * itk::mpl::PromoteType
>>>>> >> >> * Image::GetPixel performance improvements
>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>> >> >> * WarpImageFilter performance improvements
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Documentation Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>> Examples
>>>>> >> >> * ITK Software Guide improvements
>>>>> >> >>    * How to use Python wrapping
>>>>> >> >>    * How to create an ITK module
>>>>> >> >>    * Improvements to segmentation examples
>>>>> >> >>    * Expanded Canny edge detection example
>>>>> >> >>    * Expanded tree container example
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Third Party Library Updates
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * FFTW updated to latest upstream
>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>> >> >> * Build with the latest VTK
>>>>> >> >> * PNG update to the latest upstream
>>>>> >> >> * GDCM updated to the latest upstream
>>>>> >> >> * KWSys updated to the latest upstream
>>>>> >> >> * MINC updated to the latest upstream
>>>>> >> >> * SWIG updated to the latest upstream
>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>>> >> >>
>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> * *Lots* of important bug fixes
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> * And much more! See details in the log below.
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>> >> >> --------------------------------------------
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Abhishek Tiwari (1):
>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>> >> >>
>>>>> >> >> Adam Snyder (1):
>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>> >> >>
>>>>> >> >> Alexander Leinoff (6):
>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>> >> >> itkMath.h
>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>> Math::AlmostEquals
>>>>> >> >>      ENH: Updates fftw dependency
>>>>> >> >>
>>>>> >> >> Arnaud Gelas (5):
>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>> >> >>      DOC: add doxgen documentation for
>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>> >> >>      ENH: add tests to exercise
>>>>> itk::ThreadedIteratorRangePartitioner
>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>> >> >>
>>>>> >> >> Betsy McPhail (1):
>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>> >> >>
>>>>> >> >> Bill Hoffman (2):
>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>> >> >> installed.
>>>>> >> >>
>>>>> >> >> Bill Lorensen (4):
>>>>> >> >>      COMP: VTkGlue linker errors
>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>> >> >>      ENH: Better layout strategy
>>>>> >> >>
>>>>> >> >> Brad King (3):
>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>>> project
>>>>> >> >>
>>>>> >> >> Bradley Lowekamp (31):
>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>> construction
>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>> initializer
>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>> >> >>      ENH: Adding initial update script from used libpng version.
>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>> affine
>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>> >> >>      ENH: Update itkpng name mangling
>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>> ReferenceImage
>>>>> >> >> ivar
>>>>> >> >>      BUG: Increase tolerance for
>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>> BSplineScatter
>>>>> >> >> change
>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>> >> >> ImageFilterBase
>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>> construction
>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>> ReferenceImage
>>>>> >> >> ivar
>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>> MovingHistogram
>>>>> >> >> base
>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>> anonymous ns
>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>> Threshold
>>>>> >> >> range
>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>> test
>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>> >> >>
>>>>> >> >> Davis Vigneault (7):
>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>> c++11
>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>> >> >>
>>>>> >> >> D?enan Zuki? (1):
>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>> >> >>
>>>>> >> >> Eugene Prilepin (1):
>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>> >> >>
>>>>> >> >> Floris Berendsen (1):
>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>> >> >>
>>>>> >> >> Hans Johnson (29):
>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>> >> >>
>>>>> >> >> Hyun Jae Kang (27):
>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>>> file
>>>>> >> >> header.
>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>> >> >> libraries
>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>>> file
>>>>> >> >> header.
>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>> autological-compare
>>>>> >> >> warning.
>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>> function
>>>>> >> >>      ENH: Update the Report() function of
>>>>> >> >> itkResourceProbesCollectorBase
>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>> itkResourceProbe
>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>> >> >>
>>>>> >> >> Jon Haitz Legarreta (6):
>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>> >> >>      BUG: Fix compilation issues for
>>>>> StatisticsUniqueLabelMapFilterTest
>>>>> >> >>      BUG: Fix comparison issues for
>>>>> itkStatisticsUniqueLabelMapFilter
>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>> >> >>      ENH: Improve code coverage for
>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>> >> >>
>>>>> >> >> Julien Michel (1):
>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>> >> >> WarpImageFilter
>>>>> >> >>
>>>>> >> >> Junjie Bai (2):
>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>> LabelObject type
>>>>> >> >>
>>>>> >> >> KWSys Robot (4):
>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>> >> >>
>>>>> >> >> LIBPNG Upstream (2):
>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>> >> >>
>>>>> >> >> Laurentiu Nicola (2):
>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>>>> >> >>
>>>>> >> >> Luc Hermitte (8):
>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>> 1/...
>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>> >> >>
>>>>> >> >> Lucas Gandel (4):
>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>> module.
>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>> Module
>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>> >> >>
>>>>> >> >> Mathieu Malaterre (1):
>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>> >> >>
>>>>> >> >> Matthew McCormick (94):
>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>> itkCMakeConfigurationTest.
>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>> >> >> ImageToVTKImageFilter.
>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>> >> >> target_link_libraries.
>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>> AnisotropicDiffusionLBR.
>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>>> 14.04.
>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>> >> >>      ENH: Add more progress information to
>>>>> IterativeClosestPoint2.
>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>> ITKTransformMINC.
>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>> externally.
>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>> sys.path
>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>>>>> gets
>>>>> >> >> installed."
>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>> LabelMapTypes"
>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>> advanced.
>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>>>>> have
>>>>> >> >> override.
>>>>> >> >>      COMP: Add wrapping for
>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>>> found.
>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>> detection.
>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>> expression
>>>>> >> >> warning.
>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>> >> >>      BUG: Update Python package installation locations.
>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>>> >> >>
>>>>> >> >> Michka Popoff (9):
>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>> sys.path
>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>> wrapping
>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>> >> >> ImageFilterBase
>>>>> >> >> module
>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>> wrapping
>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>> >> >>
>>>>> >> >> Mikhail Isakov (1):
>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>> baseline image
>>>>> >> >>
>>>>> >> >> Nick Tustison (5):
>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>> strategy.
>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>> >> >>
>>>>> >> >> Olivier Commowick (3):
>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>>> eigen
>>>>> >> >> system
>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>>>> pythag
>>>>> >> >> from V3P)
>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>> >> >>
>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>> constructor
>>>>> >> >> from
>>>>> >> >> images.
>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>> FlatStructuringElement.
>>>>> >> >>
>>>>> >> >> Seun Odutola (1):
>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>> renamed
>>>>> >> >> check
>>>>> >> >> to Check
>>>>> >> >>
>>>>> >> >> Shawn Waldon (1):
>>>>> >> >>      COMP: Set target OS X version in environment for tools using
>>>>> >> >> compiler
>>>>> >> >>
>>>>> >> >> Simon Alexander (1):
>>>>> >> >>      BUG: incorrect closest point computation
>>>>> >> >>
>>>>> >> >> Tobias Wood (2):
>>>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>>>> off.
>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>> >> >>
>>>>> >> >> Vladimir S. FONOV (9):
>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>> >> >> Transform
>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>> >> >>      COMP: Update MINC CMake code
>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>> >> >>
>>>>> >> >> Xiaoxiao Liu (1):
>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>> >> >>
>>>>> >> >> Zach Williamson (10):
>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>> >> >>      COMP: Add a missing link to Review module
>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>> GPUPDEDeformableRegistration
>>>>> >> >>      ENH: Use new linking system macros
>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>> directories
>>>>> >> >>      COMP: Recover missing dependencies
>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> -----------------------------------------------------
>>>>> >> >> Errors or omissions? Please fix them here:
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>> >> >> _____________________________________
>>>>> >> >> Powered by www.kitware.com
>>>>> >> >>
>>>>> >> >> Visit other Kitware open-source projects at
>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>> >> >>
>>>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>> >> >>
>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>> >> >>
>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>
>>>>
>>>> _______________________________________________
>>>
>>>
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>
>>> http://kitware.com/products/protraining.php
>>>
>>>
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>>
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>
>>>>
>>>
>
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From dzenanz at gmail.com  Wed Nov 25 16:40:46 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 25 Nov 2015 16:40:46 -0500
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
 ready for testing!
In-Reply-To: <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
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 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
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 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
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Message-ID: <CAPf2UMSqrPnbJfaVZ-Nsw=m0iw8rnPENLsD0x588ekJ7wHG7yw@mail.gmail.com>

It turns out that all the compile errors were occurring in WikiExamples. I
solved all except one:
ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
23, but it should be judging from the comment on that line.

For the rest, I created a pull request:
https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3

On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
wrote:

> Perfect.  I'm under a deadline that is likely to eat the rest of the week
> but if that clears up I'll try and jump in earlier.
>
> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> OK I will work on it for an hour or two now, and I will make a branch and
>> push it to Gerrit so whoever wants can pick up from there and keep updating
>> it.
>>
>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>
>>> Makes sense.  At this point I am unlikely to have time to look at this
>>> until Saturday, but have hopes for a few free hours there.
>>>
>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> Building git master from Nov 23rd with examples and testing enabled I
>>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>>> in fixing them?
>>>>
>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>> skalexander at gmail.com> wrote:
>>>>
>>>>> Two of the three failures look like truncation issues (like
>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>>
>>>>> The other (
>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>  is less obvious.
>>>>>
>>>>> If I have time this evening I'll try and have a look at these.
>>>>>
>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>> why 2015 would trigger but not 2013.
>>>>>
>>>>>
>>>>>
>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>> matt.mccormick at kitware.com> wrote:
>>>>>
>>>>>> Ah, cool!  Here:
>>>>>>
>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>
>>>>>> Could you please look into the test failures?
>>>>>>
>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>
>>>>>> Thanks,
>>>>>> Matt
>>>>>>
>>>>>>
>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>> skalexander at gmail.com> wrote:
>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>> SIMON-LAP,
>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>> one).  VS2013
>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like
>>>>>> a
>>>>>> > truncation problem on the resuts.
>>>>>> >
>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>> matt.mccormick at kitware.com>
>>>>>> > wrote:
>>>>>> >>
>>>>>> >> Hi Simon,
>>>>>> >>
>>>>>> >> Thanks for testing.
>>>>>> >>
>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>>>> >>
>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>> >>
>>>>>> >> Are there any different flags? Could you please submit an
>>>>>> Experimental
>>>>>> >> build?
>>>>>> >>
>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>> Submit -C
>>>>>> >> Release
>>>>>> >>
>>>>>> >> from a fresh build tree.
>>>>>> >>
>>>>>> >> Thanks,
>>>>>> >> Matt
>>>>>> >>
>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>> skalexander at gmail.com>
>>>>>> >> wrote:
>>>>>> >> > Looks like a few problems with x64 build on visual studio 2015 -
>>>>>> do you
>>>>>> >> > have
>>>>>> >> > a test machine in this configuration?
>>>>>> >> >
>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>> matt.mccormick at kitware.com>
>>>>>> >> > wrote:
>>>>>> >> >>
>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>> announce
>>>>>> >> >> that
>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>>>>> >> >> testing!
>>>>>> >> >>
>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>> release
>>>>>> >> >> candidate.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> To obtain the source code,
>>>>>> >> >>
>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>> >> >>  cd ITK
>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>> >> >>
>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> A few selected highlights for this release:
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>> generation of
>>>>>> >> >> meshes
>>>>>> >> >> from binary segmentation images, and the
>>>>>> AnisotropicDiffusionLBR module
>>>>>> >> >> improved edge-preserving smoothing.
>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>> continuous
>>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>>> for your
>>>>>> >> >> C++
>>>>>> >> >> algorithms.
>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>>>>> >> >> standard
>>>>>> >> >> installation
>>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>>>>> >> >> itk::VariableLengthVector?s
>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>>> >> >> compile /
>>>>>> >> >> test
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Please test the release candidate and share your experiences on
>>>>>> the
>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>> module
>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>> dependencies for
>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>> command.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>> performs
>>>>>> >> >> on
>>>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>>>> with:
>>>>>> >> >>
>>>>>> >> >>   mkdir ../ITK-build
>>>>>> >> >>   cd ../ITK-build
>>>>>> >> >>   cmake ../ITK
>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>> Submit
>>>>>> >> >>
>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>> command.
>>>>>> >> >>
>>>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>>>> Testing
>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>> release.
>>>>>> >> >> We
>>>>>> >> >> would especially like to recognize the new contributors: Mikhail
>>>>>> >> >> Isakov,
>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>> Seun
>>>>>> >> >> Odutola,
>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>> Williamson,
>>>>>> >> >> Luc
>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>> >> >>
>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> New Features
>>>>>> >> >> ---------------------
>>>>>> >> >>
>>>>>> >> >> Wrapping improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Python 3 supported
>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>> directory in
>>>>>> >> >> the
>>>>>> >> >> ?itk? package
>>>>>> >> >> * Wrapping package size is decreased
>>>>>> >> >> * Better package portability on Mac OSX
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> New Remote Modules
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Cuberille
>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>>>> >> >>    * Web browser reproducibility:
>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Core Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>> source tree
>>>>>> >> >> and
>>>>>> >> >> on GitHub
>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>> >> >> * New utilities in itk::Math:
>>>>>> >> >>    * AlmostEquals
>>>>>> >> >>    * NotAlmostEquals
>>>>>> >> >>    * ExactlyEquals
>>>>>> >> >>    * NotExactlyEquals
>>>>>> >> >> * New itk::NumericTraits
>>>>>> >> >>    * IsInteger
>>>>>> >> >>    * IsSigned
>>>>>> >> >> * Improved C++11 support
>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Filtering Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>> module
>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>> ITKImageFilterBase
>>>>>> >> >> module
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Registration Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Build Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>>> >> >> compile /
>>>>>> >> >> test
>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>> >> >> * Expat third party library is now name mangled
>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>>>> built
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Performance Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members
>>>>>> for
>>>>>> >> >> metaprogramming
>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>> >> >>    * itk::mpl::IsSame
>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Documentation Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>> Examples
>>>>>> >> >> * ITK Software Guide improvements
>>>>>> >> >>    * How to use Python wrapping
>>>>>> >> >>    * How to create an ITK module
>>>>>> >> >>    * Improvements to segmentation examples
>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>> >> >>    * Expanded tree container example
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Third Party Library Updates
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * FFTW updated to latest upstream
>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>> >> >> * Build with the latest VTK
>>>>>> >> >> * PNG update to the latest upstream
>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>> >> >> * MINC updated to the latest upstream
>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>>>> >> >>
>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Private copy constructors and operator= use
>>>>>> ITK_DELETE_FUNCTION
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> * *Lots* of important bug fixes
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> * And much more! See details in the log below.
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>> >> >> --------------------------------------------
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Abhishek Tiwari (1):
>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>> >> >>
>>>>>> >> >> Adam Snyder (1):
>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>> >> >>
>>>>>> >> >> Alexander Leinoff (6):
>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>>> >> >> itkMath.h
>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>> Math::AlmostEquals
>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>> >> >>
>>>>>> >> >> Arnaud Gelas (5):
>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>> >> >>      ENH: add tests to exercise
>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>> >> >>
>>>>>> >> >> Betsy McPhail (1):
>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>> >> >>
>>>>>> >> >> Bill Hoffman (2):
>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>> >> >> installed.
>>>>>> >> >>
>>>>>> >> >> Bill Lorensen (4):
>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>> >> >>      ENH: Better layout strategy
>>>>>> >> >>
>>>>>> >> >> Brad King (3):
>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>>>> project
>>>>>> >> >>
>>>>>> >> >> Bradley Lowekamp (31):
>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>> construction
>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>> initializer
>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>> >> >>      ENH: Adding initial update script from used libpng version.
>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>> affine
>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>> ReferenceImage
>>>>>> >> >> ivar
>>>>>> >> >>      BUG: Increase tolerance for
>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>> BSplineScatter
>>>>>> >> >> change
>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>> >> >> ImageFilterBase
>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>> construction
>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>> ReferenceImage
>>>>>> >> >> ivar
>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>> MovingHistogram
>>>>>> >> >> base
>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>> anonymous ns
>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>> Threshold
>>>>>> >> >> range
>>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>>> test
>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>> >> >>
>>>>>> >> >> Davis Vigneault (7):
>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>> c++11
>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>> >> >>
>>>>>> >> >> D?enan Zuki? (1):
>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>> >> >>
>>>>>> >> >> Eugene Prilepin (1):
>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>> >> >>
>>>>>> >> >> Floris Berendsen (1):
>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>> >> >>
>>>>>> >> >> Hans Johnson (29):
>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>> >> >>
>>>>>> >> >> Hyun Jae Kang (27):
>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>> VTK file
>>>>>> >> >> header.
>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>>> >> >> libraries
>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS
>>>>>> X
>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>> VTK file
>>>>>> >> >> header.
>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>> autological-compare
>>>>>> >> >> warning.
>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>> function
>>>>>> >> >>      ENH: Update the Report() function of
>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>> itkResourceProbe
>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>> >> >>
>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>> >> >>      ENH: Improve code coverage for
>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>> >> >>
>>>>>> >> >> Julien Michel (1):
>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>> >> >> WarpImageFilter
>>>>>> >> >>
>>>>>> >> >> Junjie Bai (2):
>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>> LabelObject type
>>>>>> >> >>
>>>>>> >> >> KWSys Robot (4):
>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>> >> >>
>>>>>> >> >> LIBPNG Upstream (2):
>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>> >> >>
>>>>>> >> >> Laurentiu Nicola (2):
>>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>> bouncing
>>>>>> >> >>
>>>>>> >> >> Luc Hermitte (8):
>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>> 1/...
>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>> >> >>
>>>>>> >> >> Lucas Gandel (4):
>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>> module.
>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>> Module
>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>> >> >>
>>>>>> >> >> Mathieu Malaterre (1):
>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>> >> >>
>>>>>> >> >> Matthew McCormick (94):
>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>> itkCMakeConfigurationTest.
>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>> >> >> ImageToVTKImageFilter.
>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>> >> >> target_link_libraries.
>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>> AnisotropicDiffusionLBR.
>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>>>> 14.04.
>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>> >> >>      ENH: Add more progress information to
>>>>>> IterativeClosestPoint2.
>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>> TCoordRep.
>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>> ITKTransformMINC.
>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>> externally.
>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>> sys.path
>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so
>>>>>> it gets
>>>>>> >> >> installed."
>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>> LabelMapTypes"
>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>> advanced.
>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>> cannot have
>>>>>> >> >> override.
>>>>>> >> >>      COMP: Add wrapping for
>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>> ITKModuleHeaderTest.cmake
>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>>>> found.
>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>> detection.
>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>> expression
>>>>>> >> >> warning.
>>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>>>> >> >>
>>>>>> >> >> Michka Popoff (9):
>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>> sys.path
>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>> wrapping
>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>> >> >> ImageFilterBase
>>>>>> >> >> module
>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>> wrapping
>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>> >> >>
>>>>>> >> >> Mikhail Isakov (1):
>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>> baseline image
>>>>>> >> >>
>>>>>> >> >> Nick Tustison (5):
>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>> strategy.
>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>> >> >>
>>>>>> >> >> Olivier Commowick (3):
>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>>>> eigen
>>>>>> >> >> system
>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>>>>> pythag
>>>>>> >> >> from V3P)
>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>> >> >>
>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>> constructor
>>>>>> >> >> from
>>>>>> >> >> images.
>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>> FlatStructuringElement.
>>>>>> >> >>
>>>>>> >> >> Seun Odutola (1):
>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>> renamed
>>>>>> >> >> check
>>>>>> >> >> to Check
>>>>>> >> >>
>>>>>> >> >> Shawn Waldon (1):
>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>> using
>>>>>> >> >> compiler
>>>>>> >> >>
>>>>>> >> >> Simon Alexander (1):
>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>> >> >>
>>>>>> >> >> Tobias Wood (2):
>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>>>>> off.
>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>> >> >>
>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>>> >> >> Transform
>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>> >> >>
>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>> >> >>
>>>>>> >> >> Zach Williamson (10):
>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>> GPUPDEDeformableRegistration
>>>>>> >> >>      ENH: Use new linking system macros
>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>> directories
>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> -----------------------------------------------------
>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>> >> >> _____________________________________
>>>>>> >> >> Powered by www.kitware.com
>>>>>> >> >>
>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>> >> >>
>>>>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>> >> >>
>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>> >> >>
>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>
>>>>>
>>>>> _______________________________________________
>>>>
>>>>
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>
>>>> http://kitware.com/products/protraining.php
>>>>
>>>>
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>>
>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>
>>>>>
>>>>
>>
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From seun at rogue-research.com  Thu Nov 26 16:04:04 2015
From: seun at rogue-research.com (Seun Odutola)
Date: Thu, 26 Nov 2015 16:04:04 -0500
Subject: [ITK-dev] itkImageToImageFilter issue with negative space from
	Analyze file
Message-ID: <1D91665A-B784-462D-865C-B47973DA7F51@rogue-research.com>

Hi Everyone,

      I have an Anaylze 7.5 file with negative spacing in it and previously my unit test for this file passed in ITK 3.20.x which is now failing in ITK 4.9 (git master). I happen to have noticed there is a tolerance check in the file itkImageToImageFilter.hxx which in my opinion needs to be of absolute value. My question is, is the calculation of the tolerance deliberate?  Note that for this file, inputPtr1->GetSpacing()[0] gives -1.

const SpacePrecisionType coordinateTol
        = this->m_CoordinateTolerance * inputPtr1->GetSpacing()[0]; // use first dimension spacing
        
      if ( !inputPtr1->GetOrigin().GetVnlVector().is_equal(inputPtrN->GetOrigin().GetVnlVector(), coordinateTol) ||
           !inputPtr1->GetSpacing().GetVnlVector().is_equal(inputPtrN->GetSpacing().GetVnlVector(), coordinateTol) ||
           !inputPtr1->GetDirection().GetVnlMatrix().as_ref().is_equal(inputPtrN->GetDirection().GetVnlMatrix(), this->m_DirectionTolerance) )
        {
        std::ostringstream originString, spacingString, directionString;
        if ( !inputPtr1->GetOrigin().GetVnlVector().is_equal(inputPtrN->GetOrigin().GetVnlVector(), coordinateTol) )
          {
          originString.setf( std::ios::scientific );
          originString.precision( 7 );
          originString << "InputImage Origin: " << inputPtr1->GetOrigin()
                       << ", InputImage" << it.GetName() << " Origin: " << inputPtrN->GetOrigin() << std::endl;
          originString << "\tTolerance: " << coordinateTol << std::endl;
          }
        

????.


Regards,
  Seun.
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From p.zaffino at yahoo.it  Fri Nov 27 05:21:50 2015
From: p.zaffino at yahoo.it (Paolo Zaffino)
Date: Fri, 27 Nov 2015 11:21:50 +0100
Subject: [ITK-dev] Gerrit login
Message-ID: <56582EBE.9030205@yahoo.it>

Dear all,
I am facing some problems with gerrit login.
I approved the github stuff but when I try to open the page 
http://review.source.kitware.com/ I get the message "Forbidden".

Any idea?
Thank you very much.

Best.
Paolo

From dzenanz at gmail.com  Fri Nov 27 10:23:01 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Fri, 27 Nov 2015 10:23:01 -0500
Subject: [ITK-dev] Gerrit login
In-Reply-To: <56582EBE.9030205@yahoo.it>
References: <56582EBE.9030205@yahoo.it>
Message-ID: <CAPf2UMRunvEKwuYGNfBGMMxuEZDhbb-v4Pzg9wnB1YGbuKho1A@mail.gmail.com>

Hi Paolo,

clicking on your link works for me. Have you tried clearing cookies for
that domain? You might be logged in with the wrong account.

Regards,
D?enan

On Fri, Nov 27, 2015 at 5:21 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:

> Dear all,
> I am facing some problems with gerrit login.
> I approved the github stuff but when I try to open the page
> http://review.source.kitware.com/ I get the message "Forbidden".
>
> Any idea?
> Thank you very much.
>
> Best.
> Paolo
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
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From matt.mccormick at kitware.com  Fri Nov 27 17:01:19 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 27 Nov 2015 17:01:19 -0500
Subject: [ITK-dev] Gerrit login
In-Reply-To: <56582EBE.9030205@yahoo.it>
References: <56582EBE.9030205@yahoo.it>
Message-ID: <CALzTN-R9g1B75h_Cb7=O1qUZCwcv4t_j1DQqQxr_Sbw8HazXZw@mail.gmail.com>

Hi Paolo,

We had another account experience this issue when they had started an
account with the old Gerrit system, but they had not logged in with
the new GitHub authentication before the recent move to Gerrit 2.11.

I will work with the sys-admin's to reset your account.

If anyone else experiences this, please let me know.

Thanks,
Matt

On Fri, Nov 27, 2015 at 5:21 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:
> Dear all,
> I am facing some problems with gerrit login.
> I approved the github stuff but when I try to open the page
> http://review.source.kitware.com/ I get the message "Forbidden".
>
> Any idea?
> Thank you very much.
>
> Best.
> Paolo
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers

From sean at rogue-research.com  Fri Nov 27 17:05:44 2015
From: sean at rogue-research.com (Sean McBride)
Date: Fri, 27 Nov 2015 17:05:44 -0500
Subject: [ITK-dev] Gerrit login
In-Reply-To: <56582EBE.9030205@yahoo.it>
References: <56582EBE.9030205@yahoo.it>
Message-ID: <20151127220544.877223362@mail.rogue-research.com>

On Fri, 27 Nov 2015 11:21:50 +0100, Paolo Zaffino said:

>I am facing some problems with gerrit login.
>I approved the github stuff but when I try to open the page 
>http://review.source.kitware.com/ I get the message "Forbidden".

What browser are you using?

I haven't used gerrit much lately, but when I try to log in, I get to the github login page, enter my credentials, then it tells me "Your browser did something unexpected. Please contact us if the problem persists."  Then I try in Firefox and it works.  (Normally I use Safari.)  Logging into github directly with Safari works.

Cheers,

-- 
____________________________________________________________
Sean McBride, B. Eng                 sean at rogue-research.com
Rogue Research                        www.rogue-research.com 
Mac Software Developer              Montr?al, Qu?bec, Canada



From p.zaffino at yahoo.it  Mon Nov 30 05:50:08 2015
From: p.zaffino at yahoo.it (Paolo Zaffino)
Date: Mon, 30 Nov 2015 11:50:08 +0100
Subject: [ITK-dev] Gerrit login
In-Reply-To: <20151127220544.877223362@mail.rogue-research.com>
References: <56582EBE.9030205@yahoo.it>
 <20151127220544.877223362@mail.rogue-research.com>
Message-ID: <565C29E0.4080607@yahoo.it>

Hi,
I am using both crhomium and firefox, but nothing changes (also with a 
clear cache).
I think that, as Matt said, it is an admin side issue.

Thanks a lot.
Paolo




On 27/11/2015 23:05, Sean McBride wrote:
> On Fri, 27 Nov 2015 11:21:50 +0100, Paolo Zaffino said:
>
>> I am facing some problems with gerrit login.
>> I approved the github stuff but when I try to open the page
>> http://review.source.kitware.com/ I get the message "Forbidden".
> What browser are you using?
>
> I haven't used gerrit much lately, but when I try to log in, I get to the github login page, enter my credentials, then it tells me "Your browser did something unexpected. Please contact us if the problem persists."  Then I try in Firefox and it works.  (Normally I use Safari.)  Logging into github directly with Safari works.
>
> Cheers,
>


From bill.lorensen at gmail.com  Mon Nov 30 12:31:42 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Mon, 30 Nov 2015 12:31:42 -0500
Subject: [ITK-dev] Lingering Valgrind defect
Message-ID: <CADZJ4hNT8Bv8Uni06ts-=Ajo3gdKNyTxoaLic9iezzhnP8rn0A@mail.gmail.com>

Folks,

This gerrit commit in August
http://review.source.kitware.com/#/c/20081/

is causing this valgrind defect:
https://open.cdash.org/viewDynamicAnalysisFile.php?id=3624555

Related to the NotAlmostEquals access. If that is replaced with == the
defect gpoes away, but the test fails.

If I understood how those new functions work, I might have been able
to give a solution.

Bill

From bill.lorensen at gmail.com  Mon Nov 30 13:36:39 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Mon, 30 Nov 2015 13:36:39 -0500
Subject: [ITK-dev] Lingering Valgrind defect
In-Reply-To: <CADZJ4hNT8Bv8Uni06ts-=Ajo3gdKNyTxoaLic9iezzhnP8rn0A@mail.gmail.com>
References: <CADZJ4hNT8Bv8Uni06ts-=Ajo3gdKNyTxoaLic9iezzhnP8rn0A@mail.gmail.com>
Message-ID: <CADZJ4hNP24QUsT3u3E18jPOWtPhB3ohDNmUzyzATAr7t+A4KfA@mail.gmail.com>

If I change the it.Value() and it2.Value() to it.Get() and it2.Get(),
the defect goes away. Value() returns a reference. I suspect that the
new comparisons are somehow accessing too much memory.

I'll put a patch in with the replacement.

Bill

On Mon, Nov 30, 2015 at 12:31 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> Folks,
>
> This gerrit commit in August
> http://review.source.kitware.com/#/c/20081/
>
> is causing this valgrind defect:
> https://open.cdash.org/viewDynamicAnalysisFile.php?id=3624555
>
> Related to the NotAlmostEquals access. If that is replaced with == the
> defect gpoes away, but the test fails.
>
> If I understood how those new functions work, I might have been able
> to give a solution.
>
> Bill



-- 
Unpaid intern in BillsBasement at noware dot com

From skalexander at gmail.com  Mon Nov 30 13:53:59 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Mon, 30 Nov 2015 18:53:59 +0000
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
 ready for testing!
In-Reply-To: <CAPf2UMSqrPnbJfaVZ-Nsw=m0iw8rnPENLsD0x588ekJ7wHG7yw@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
 <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
 <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>
 <CAPf2UMSqrPnbJfaVZ-Nsw=m0iw8rnPENLsD0x588ekJ7wHG7yw@mail.gmail.com>
Message-ID: <CAJFNcCQr1F6QjqaC6MFDo66Y609JTzuiCPCHCN6JF0OaNfoB7g@mail.gmail.com>

Hi All,

I had hoped to be able to look at this over the weekend, but no such luck.
Is there somewhere useful I can help with it now?  Not sure what state we
are in (or what branch).

On Wed, 25 Nov 2015 at 16:41 D?enan Zuki? <dzenanz at gmail.com> wrote:

> It turns out that all the compile errors were occurring in WikiExamples. I
> solved all except one:
> ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
> file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
> 23, but it should be judging from the comment on that line.
>
> For the rest, I created a pull request:
> https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
>
> On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Perfect.  I'm under a deadline that is likely to eat the rest of the week
>> but if that clears up I'll try and jump in earlier.
>>
>> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> OK I will work on it for an hour or two now, and I will make a branch
>>> and push it to Gerrit so whoever wants can pick up from there and keep
>>> updating it.
>>>
>>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>>
>>>> Makes sense.  At this point I am unlikely to have time to look at this
>>>> until Saturday, but have hopes for a few free hours there.
>>>>
>>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> Building git master from Nov 23rd with examples and testing enabled I
>>>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>>>> in fixing them?
>>>>>
>>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>>> skalexander at gmail.com> wrote:
>>>>>
>>>>>> Two of the three failures look like truncation issues (like
>>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>>>
>>>>>> The other (
>>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>>  is less obvious.
>>>>>>
>>>>>> If I have time this evening I'll try and have a look at these.
>>>>>>
>>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>>> why 2015 would trigger but not 2013.
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>>> matt.mccormick at kitware.com> wrote:
>>>>>>
>>>>>>> Ah, cool!  Here:
>>>>>>>
>>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>>
>>>>>>> Could you please look into the test failures?
>>>>>>>
>>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Matt
>>>>>>>
>>>>>>>
>>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>>> skalexander at gmail.com> wrote:
>>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>>> SIMON-LAP,
>>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>>> one).  VS2013
>>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks
>>>>>>> like a
>>>>>>> > truncation problem on the resuts.
>>>>>>> >
>>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>>> matt.mccormick at kitware.com>
>>>>>>> > wrote:
>>>>>>> >>
>>>>>>> >> Hi Simon,
>>>>>>> >>
>>>>>>> >> Thanks for testing.
>>>>>>> >>
>>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>>>>> >>
>>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>>> >>
>>>>>>> >> Are there any different flags? Could you please submit an
>>>>>>> Experimental
>>>>>>> >> build?
>>>>>>> >>
>>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>> Submit -C
>>>>>>> >> Release
>>>>>>> >>
>>>>>>> >> from a fresh build tree.
>>>>>>> >>
>>>>>>> >> Thanks,
>>>>>>> >> Matt
>>>>>>> >>
>>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>>> skalexander at gmail.com>
>>>>>>> >> wrote:
>>>>>>> >> > Looks like a few problems with x64 build on visual studio 2015
>>>>>>> - do you
>>>>>>> >> > have
>>>>>>> >> > a test machine in this configuration?
>>>>>>> >> >
>>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>>> matt.mccormick at kitware.com>
>>>>>>> >> > wrote:
>>>>>>> >> >>
>>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>>> announce
>>>>>>> >> >> that
>>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available
>>>>>>> for
>>>>>>> >> >> testing!
>>>>>>> >> >>
>>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>>> release
>>>>>>> >> >> candidate.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> To obtain the source code,
>>>>>>> >> >>
>>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>>> >> >>  cd ITK
>>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>>> >> >>
>>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> A few selected highlights for this release:
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>>> generation of
>>>>>>> >> >> meshes
>>>>>>> >> >> from binary segmentation images, and the
>>>>>>> AnisotropicDiffusionLBR module
>>>>>>> >> >> improved edge-preserving smoothing.
>>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>>> continuous
>>>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>>>> for your
>>>>>>> >> >> C++
>>>>>>> >> >> algorithms.
>>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a
>>>>>>> more
>>>>>>> >> >> standard
>>>>>>> >> >> installation
>>>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations
>>>>>>> on
>>>>>>> >> >> itk::VariableLengthVector?s
>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>> >> >> * Module dependencies can now be specified as public / private
>>>>>>> /
>>>>>>> >> >> compile /
>>>>>>> >> >> test
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Please test the release candidate and share your experiences
>>>>>>> on the
>>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>>> module
>>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>>> dependencies for
>>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>>> command.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>>> performs
>>>>>>> >> >> on
>>>>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>>>>> with:
>>>>>>> >> >>
>>>>>>> >> >>   mkdir ../ITK-build
>>>>>>> >> >>   cd ../ITK-build
>>>>>>> >> >>   cmake ../ITK
>>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>> Submit
>>>>>>> >> >>
>>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>>> command.
>>>>>>> >> >>
>>>>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>>>>> Testing
>>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>>> release.
>>>>>>> >> >> We
>>>>>>> >> >> would especially like to recognize the new contributors:
>>>>>>> Mikhail
>>>>>>> >> >> Isakov,
>>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>>> Seun
>>>>>>> >> >> Odutola,
>>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>>> Williamson,
>>>>>>> >> >> Luc
>>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>>> >> >>
>>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> New Features
>>>>>>> >> >> ---------------------
>>>>>>> >> >>
>>>>>>> >> >> Wrapping improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Python 3 supported
>>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>>> directory in
>>>>>>> >> >> the
>>>>>>> >> >> ?itk? package
>>>>>>> >> >> * Wrapping package size is decreased
>>>>>>> >> >> * Better package portability on Mac OSX
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> New Remote Modules
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Cuberille
>>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>>>>> >> >>    * Web browser reproducibility:
>>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Core Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>>> source tree
>>>>>>> >> >> and
>>>>>>> >> >> on GitHub
>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>>> >> >> * New utilities in itk::Math:
>>>>>>> >> >>    * AlmostEquals
>>>>>>> >> >>    * NotAlmostEquals
>>>>>>> >> >>    * ExactlyEquals
>>>>>>> >> >>    * NotExactlyEquals
>>>>>>> >> >> * New itk::NumericTraits
>>>>>>> >> >>    * IsInteger
>>>>>>> >> >>    * IsSigned
>>>>>>> >> >> * Improved C++11 support
>>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Filtering Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>>> module
>>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>>> ITKImageFilterBase
>>>>>>> >> >> module
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Registration Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Build Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Module dependencies can now be specified as public / private
>>>>>>> /
>>>>>>> >> >> compile /
>>>>>>> >> >> test
>>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>>> >> >> * Expat third party library is now name mangled
>>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>>>>> built
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Performance Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds
>>>>>>> members for
>>>>>>> >> >> metaprogramming
>>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>>> >> >>    * itk::mpl::IsSame
>>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Documentation Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>>> Examples
>>>>>>> >> >> * ITK Software Guide improvements
>>>>>>> >> >>    * How to use Python wrapping
>>>>>>> >> >>    * How to create an ITK module
>>>>>>> >> >>    * Improvements to segmentation examples
>>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>>> >> >>    * Expanded tree container example
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Third Party Library Updates
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * FFTW updated to latest upstream
>>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>>> >> >> * Build with the latest VTK
>>>>>>> >> >> * PNG update to the latest upstream
>>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>>> >> >> * MINC updated to the latest upstream
>>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>>>>> >> >>
>>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Private copy constructors and operator= use
>>>>>>> ITK_DELETE_FUNCTION
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> * *Lots* of important bug fixes
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> * And much more! See details in the log below.
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>>> >> >> --------------------------------------------
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Abhishek Tiwari (1):
>>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>>> >> >>
>>>>>>> >> >> Adam Snyder (1):
>>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>>> >> >>
>>>>>>> >> >> Alexander Leinoff (6):
>>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be
>>>>>>> resolved.
>>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>>>> >> >> itkMath.h
>>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>>> Math::AlmostEquals
>>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>>> >> >>
>>>>>>> >> >> Arnaud Gelas (5):
>>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>>> >> >>      ENH: add tests to exercise
>>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>>> >> >>
>>>>>>> >> >> Betsy McPhail (1):
>>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>>> >> >>
>>>>>>> >> >> Bill Hoffman (2):
>>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>>> >> >> installed.
>>>>>>> >> >>
>>>>>>> >> >> Bill Lorensen (4):
>>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>>> >> >>      ENH: Better layout strategy
>>>>>>> >> >>
>>>>>>> >> >> Brad King (3):
>>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and
>>>>>>> itksys_ios::*
>>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and
>>>>>>> itksys_stl::*
>>>>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>>>>> project
>>>>>>> >> >>
>>>>>>> >> >> Bradley Lowekamp (31):
>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>> construction
>>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>>> initializer
>>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>>> >> >>      ENH: Adding initial update script from used libpng
>>>>>>> version.
>>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged
>>>>>>> code
>>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>>> affine
>>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>> ReferenceImage
>>>>>>> >> >> ivar
>>>>>>> >> >>      BUG: Increase tolerance for
>>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>>> BSplineScatter
>>>>>>> >> >> change
>>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>>> >> >> ImageFilterBase
>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>> construction
>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>> ReferenceImage
>>>>>>> >> >> ivar
>>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>>> MovingHistogram
>>>>>>> >> >> base
>>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>>> anonymous ns
>>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>>> Threshold
>>>>>>> >> >> range
>>>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>>>> test
>>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>>> >> >>
>>>>>>> >> >> Davis Vigneault (7):
>>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>>> c++11
>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>> >> >>
>>>>>>> >> >> D?enan Zuki? (1):
>>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>>> >> >>
>>>>>>> >> >> Eugene Prilepin (1):
>>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>>> >> >>
>>>>>>> >> >> Floris Berendsen (1):
>>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>>> >> >>
>>>>>>> >> >> Hans Johnson (29):
>>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>>> >> >>
>>>>>>> >> >> Hyun Jae Kang (27):
>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>> VTK file
>>>>>>> >> >> header.
>>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>>>> >> >> libraries
>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac
>>>>>>> OS X
>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>> VTK file
>>>>>>> >> >> header.
>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>>> autological-compare
>>>>>>> >> >> warning.
>>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>> messages
>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>> messages
>>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>>> function
>>>>>>> >> >>      ENH: Update the Report() function of
>>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>>> itkResourceProbe
>>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>>> >> >>
>>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>>> >> >>      ENH: Improve code coverage for
>>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>>> >> >>
>>>>>>> >> >> Julien Michel (1):
>>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>>> >> >> WarpImageFilter
>>>>>>> >> >>
>>>>>>> >> >> Junjie Bai (2):
>>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>>> LabelObject type
>>>>>>> >> >>
>>>>>>> >> >> KWSys Robot (4):
>>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>>> >> >>
>>>>>>> >> >> LIBPNG Upstream (2):
>>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>>> >> >>
>>>>>>> >> >> Laurentiu Nicola (2):
>>>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>>> bouncing
>>>>>>> >> >>
>>>>>>> >> >> Luc Hermitte (8):
>>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>>> 1/...
>>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>>> >> >>
>>>>>>> >> >> Lucas Gandel (4):
>>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>>> module.
>>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>>> Module
>>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>>> >> >>
>>>>>>> >> >> Mathieu Malaterre (1):
>>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>>> >> >>
>>>>>>> >> >> Matthew McCormick (94):
>>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>>> itkCMakeConfigurationTest.
>>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>> ConditionVariableNoThreads.
>>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>>> >> >> ImageToVTKImageFilter.
>>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>>> >> >> target_link_libraries.
>>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with
>>>>>>> Emscripten-1.
>>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>>> AnisotropicDiffusionLBR.
>>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>>>>> 14.04.
>>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja +
>>>>>>> MSVC.
>>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>> >> >>      ENH: Add more progress information to
>>>>>>> IterativeClosestPoint2.
>>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>>> TCoordRep.
>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>>> ITKTransformMINC.
>>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>>> externally.
>>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>> ConditionVariableNoThreads.
>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument
>>>>>>> type.
>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>> sys.path
>>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so
>>>>>>> it gets
>>>>>>> >> >> installed."
>>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>>> LabelMapTypes"
>>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>>> advanced.
>>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>>> cannot have
>>>>>>> >> >> override.
>>>>>>> >> >>      COMP: Add wrapping for
>>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>>> ITKModuleHeaderTest.cmake
>>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>>>>> found.
>>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>>> detection.
>>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>>> expression
>>>>>>> >> >> warning.
>>>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>>> >> >>      STYLE: Improve namespace bracket style in
>>>>>>> itkIsConvertible.
>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module
>>>>>>> test.
>>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>>>>> >> >>
>>>>>>> >> >> Michka Popoff (9):
>>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>> sys.path
>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>> wrapping
>>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>>> >> >> ImageFilterBase
>>>>>>> >> >> module
>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>> wrapping
>>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>>> >> >>
>>>>>>> >> >> Mikhail Isakov (1):
>>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>>> baseline image
>>>>>>> >> >>
>>>>>>> >> >> Nick Tustison (5):
>>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>>> strategy.
>>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>>> >> >>
>>>>>>> >> >> Olivier Commowick (3):
>>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>>>>> eigen
>>>>>>> >> >> system
>>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken
>>>>>>> from pythag
>>>>>>> >> >> from V3P)
>>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>>> >> >>
>>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>>> constructor
>>>>>>> >> >> from
>>>>>>> >> >> images.
>>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>>> FlatStructuringElement.
>>>>>>> >> >>
>>>>>>> >> >> Seun Odutola (1):
>>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>>> renamed
>>>>>>> >> >> check
>>>>>>> >> >> to Check
>>>>>>> >> >>
>>>>>>> >> >> Shawn Waldon (1):
>>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>>> using
>>>>>>> >> >> compiler
>>>>>>> >> >>
>>>>>>> >> >> Simon Alexander (1):
>>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>>> >> >>
>>>>>>> >> >> Tobias Wood (2):
>>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug
>>>>>>> switched off.
>>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>>> >> >>
>>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>>>> >> >> Transform
>>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>>> >> >>
>>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>>> >> >>
>>>>>>> >> >> Zach Williamson (10):
>>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>>> GPUPDEDeformableRegistration
>>>>>>> >> >>      ENH: Use new linking system macros
>>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>>> directories
>>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> -----------------------------------------------------
>>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>>> >> >> _____________________________________
>>>>>>> >> >> Powered by www.kitware.com
>>>>>>> >> >>
>>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>>> >> >>
>>>>>>> >> >> Kitware offers ITK Training Courses, for more information
>>>>>>> visit:
>>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>>> >> >>
>>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>> >> >>
>>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>
>>>>>
>>>>>> Powered by www.kitware.com
>>>>>>
>>>>>> Visit other Kitware open-source projects at
>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>
>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>
>>>>> http://kitware.com/products/protraining.php
>>>>>
>>>>>
>>>>>>
>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>
>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>
>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>>
>>>>>>
>>>>>
>>>
>
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From dzenanz at gmail.com  Mon Nov 30 14:00:26 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 30 Nov 2015 14:00:26 -0500
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
 ready for testing!
In-Reply-To: <CAJFNcCQr1F6QjqaC6MFDo66Y609JTzuiCPCHCN6JF0OaNfoB7g@mail.gmail.com>
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Message-ID: <CAPf2UMT=7HT0=b6S_OPJhvZLFYsVsOMb_oWpP_+pOPOO9EsnrQ@mail.gmail.com>

Looking at the master branch is the right thing to do. I am not doing any
active development regarding this right now.

On Mon, Nov 30, 2015 at 1:53 PM, Simon Alexander <skalexander at gmail.com>
wrote:

> Hi All,
>
> I had hoped to be able to look at this over the weekend, but no such luck.
> Is there somewhere useful I can help with it now?  Not sure what state we
> are in (or what branch).
>
> On Wed, 25 Nov 2015 at 16:41 D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> It turns out that all the compile errors were occurring in WikiExamples.
>> I solved all except one:
>> ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
>> file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
>> 23, but it should be judging from the comment on that line.
>>
>> For the rest, I created a pull request:
>> https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
>>
>> On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>
>>> Perfect.  I'm under a deadline that is likely to eat the rest of the
>>> week but if that clears up I'll try and jump in earlier.
>>>
>>> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> OK I will work on it for an hour or two now, and I will make a branch
>>>> and push it to Gerrit so whoever wants can pick up from there and keep
>>>> updating it.
>>>>
>>>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com
>>>> > wrote:
>>>>
>>>>> Makes sense.  At this point I am unlikely to have time to look at this
>>>>> until Saturday, but have hopes for a few free hours there.
>>>>>
>>>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>
>>>>>> Building git master from Nov 23rd with examples and testing enabled I
>>>>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>>>>> in fixing them?
>>>>>>
>>>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>>>> skalexander at gmail.com> wrote:
>>>>>>
>>>>>>> Two of the three failures look like truncation issues (like
>>>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>>>>
>>>>>>> The other (
>>>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>>>  is less obvious.
>>>>>>>
>>>>>>> If I have time this evening I'll try and have a look at these.
>>>>>>>
>>>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>>>> why 2015 would trigger but not 2013.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>>>> matt.mccormick at kitware.com> wrote:
>>>>>>>
>>>>>>>> Ah, cool!  Here:
>>>>>>>>
>>>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>>>
>>>>>>>> Could you please look into the test failures?
>>>>>>>>
>>>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> Matt
>>>>>>>>
>>>>>>>>
>>>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>>>> SIMON-LAP,
>>>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>>>> one).  VS2013
>>>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks
>>>>>>>> like a
>>>>>>>> > truncation problem on the resuts.
>>>>>>>> >
>>>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>> > wrote:
>>>>>>>> >>
>>>>>>>> >> Hi Simon,
>>>>>>>> >>
>>>>>>>> >> Thanks for testing.
>>>>>>>> >>
>>>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is
>>>>>>>> green:
>>>>>>>> >>
>>>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>>>> >>
>>>>>>>> >> Are there any different flags? Could you please submit an
>>>>>>>> Experimental
>>>>>>>> >> build?
>>>>>>>> >>
>>>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>>> Submit -C
>>>>>>>> >> Release
>>>>>>>> >>
>>>>>>>> >> from a fresh build tree.
>>>>>>>> >>
>>>>>>>> >> Thanks,
>>>>>>>> >> Matt
>>>>>>>> >>
>>>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>>>> skalexander at gmail.com>
>>>>>>>> >> wrote:
>>>>>>>> >> > Looks like a few problems with x64 build on visual studio 2015
>>>>>>>> - do you
>>>>>>>> >> > have
>>>>>>>> >> > a test machine in this configuration?
>>>>>>>> >> >
>>>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>> >> > wrote:
>>>>>>>> >> >>
>>>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>>>> announce
>>>>>>>> >> >> that
>>>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available
>>>>>>>> for
>>>>>>>> >> >> testing!
>>>>>>>> >> >>
>>>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>>>> release
>>>>>>>> >> >> candidate.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> To obtain the source code,
>>>>>>>> >> >>
>>>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>>>> >> >>  cd ITK
>>>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>>>> >> >>
>>>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> A few selected highlights for this release:
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>>>> generation of
>>>>>>>> >> >> meshes
>>>>>>>> >> >> from binary segmentation images, and the
>>>>>>>> AnisotropicDiffusionLBR module
>>>>>>>> >> >> improved edge-preserving smoothing.
>>>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>>>> continuous
>>>>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>>>>> for your
>>>>>>>> >> >> C++
>>>>>>>> >> >> algorithms.
>>>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a
>>>>>>>> more
>>>>>>>> >> >> standard
>>>>>>>> >> >> installation
>>>>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations
>>>>>>>> on
>>>>>>>> >> >> itk::VariableLengthVector?s
>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>> private /
>>>>>>>> >> >> compile /
>>>>>>>> >> >> test
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Please test the release candidate and share your experiences
>>>>>>>> on the
>>>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>>>> module
>>>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>>>> dependencies for
>>>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>>>> command.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>>>> performs
>>>>>>>> >> >> on
>>>>>>>> >> >> your local build system, can be submitted to the dashboard
>>>>>>>> [2] with:
>>>>>>>> >> >>
>>>>>>>> >> >>   mkdir ../ITK-build
>>>>>>>> >> >>   cd ../ITK-build
>>>>>>>> >> >>   cmake ../ITK
>>>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test
>>>>>>>> -T Submit
>>>>>>>> >> >>
>>>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>>>> command.
>>>>>>>> >> >>
>>>>>>>> >> >> Notify the mailing list if there are any unexpected
>>>>>>>> failures.  Testing
>>>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>>>> release.
>>>>>>>> >> >> We
>>>>>>>> >> >> would especially like to recognize the new contributors:
>>>>>>>> Mikhail
>>>>>>>> >> >> Isakov,
>>>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>>>> Seun
>>>>>>>> >> >> Odutola,
>>>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>>>> Williamson,
>>>>>>>> >> >> Luc
>>>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>>>> >> >>
>>>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> New Features
>>>>>>>> >> >> ---------------------
>>>>>>>> >> >>
>>>>>>>> >> >> Wrapping improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Python 3 supported
>>>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>>>> directory in
>>>>>>>> >> >> the
>>>>>>>> >> >> ?itk? package
>>>>>>>> >> >> * Wrapping package size is decreased
>>>>>>>> >> >> * Better package portability on Mac OSX
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> New Remote Modules
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Cuberille
>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>> http://hdl.handle.net/10380/3186
>>>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>> http://hdl.handle.net/10380/3505
>>>>>>>> >> >>    * Web browser reproducibility:
>>>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Core Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>>>> source tree
>>>>>>>> >> >> and
>>>>>>>> >> >> on GitHub
>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>>>> >> >> * New utilities in itk::Math:
>>>>>>>> >> >>    * AlmostEquals
>>>>>>>> >> >>    * NotAlmostEquals
>>>>>>>> >> >>    * ExactlyEquals
>>>>>>>> >> >>    * NotExactlyEquals
>>>>>>>> >> >> * New itk::NumericTraits
>>>>>>>> >> >>    * IsInteger
>>>>>>>> >> >>    * IsSigned
>>>>>>>> >> >> * Improved C++11 support
>>>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Filtering Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>>>> module
>>>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>>>> ITKImageFilterBase
>>>>>>>> >> >> module
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Registration Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Build Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>> private /
>>>>>>>> >> >> compile /
>>>>>>>> >> >> test
>>>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>>>> >> >> * Expat third party library is now name mangled
>>>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>>>> >> >> * KWStyle is automatically built and configured when tests
>>>>>>>> are built
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Performance Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds
>>>>>>>> members for
>>>>>>>> >> >> metaprogramming
>>>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>>>> >> >>    * itk::mpl::IsSame
>>>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Documentation Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>>>> Examples
>>>>>>>> >> >> * ITK Software Guide improvements
>>>>>>>> >> >>    * How to use Python wrapping
>>>>>>>> >> >>    * How to create an ITK module
>>>>>>>> >> >>    * Improvements to segmentation examples
>>>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>>>> >> >>    * Expanded tree container example
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Third Party Library Updates
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * FFTW updated to latest upstream
>>>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>>>> >> >> * Build with the latest VTK
>>>>>>>> >> >> * PNG update to the latest upstream
>>>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>>>> >> >> * MINC updated to the latest upstream
>>>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Style improvements -- ITK gets more stylish with every
>>>>>>>> release!
>>>>>>>> >> >>
>>>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Private copy constructors and operator= use
>>>>>>>> ITK_DELETE_FUNCTION
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> * *Lots* of important bug fixes
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> * And much more! See details in the log below.
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>>>> >> >> --------------------------------------------
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Abhishek Tiwari (1):
>>>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>>>> >> >>
>>>>>>>> >> >> Adam Snyder (1):
>>>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>>>> >> >>
>>>>>>>> >> >> Alexander Leinoff (6):
>>>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be
>>>>>>>> resolved.
>>>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>>>>> >> >> itkMath.h
>>>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>>>> Math::AlmostEquals
>>>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>>>> >> >>
>>>>>>>> >> >> Arnaud Gelas (5):
>>>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>>>> >> >>      ENH: add tests to exercise
>>>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>>>> >> >>
>>>>>>>> >> >> Betsy McPhail (1):
>>>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>>>> >> >>
>>>>>>>> >> >> Bill Hoffman (2):
>>>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>>>> >> >> installed.
>>>>>>>> >> >>
>>>>>>>> >> >> Bill Lorensen (4):
>>>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>>>> >> >>      ENH: Better layout strategy
>>>>>>>> >> >>
>>>>>>>> >> >> Brad King (3):
>>>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and
>>>>>>>> itksys_ios::*
>>>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and
>>>>>>>> itksys_stl::*
>>>>>>>> >> >>      ENH: Update CMake Policy settings in
>>>>>>>> Testing/TestExternal project
>>>>>>>> >> >>
>>>>>>>> >> >> Bradley Lowekamp (31):
>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>> construction
>>>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>>>> initializer
>>>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>>>> >> >>      ENH: Adding initial update script from used libpng
>>>>>>>> version.
>>>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged
>>>>>>>> code
>>>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>>>> affine
>>>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>> ReferenceImage
>>>>>>>> >> >> ivar
>>>>>>>> >> >>      BUG: Increase tolerance for
>>>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>>>> BSplineScatter
>>>>>>>> >> >> change
>>>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>>>> >> >> ImageFilterBase
>>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>> construction
>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>> ReferenceImage
>>>>>>>> >> >> ivar
>>>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>>>> MovingHistogram
>>>>>>>> >> >> base
>>>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>>>> anonymous ns
>>>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>>>> Threshold
>>>>>>>> >> >> range
>>>>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>>>>> test
>>>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>>>> >> >>
>>>>>>>> >> >> Davis Vigneault (7):
>>>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>>>> c++11
>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>> >> >>
>>>>>>>> >> >> D?enan Zuki? (1):
>>>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>>>> >> >>
>>>>>>>> >> >> Eugene Prilepin (1):
>>>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>>>> >> >>
>>>>>>>> >> >> Floris Berendsen (1):
>>>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>>>> >> >>
>>>>>>>> >> >> Hans Johnson (29):
>>>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>>>> >> >>
>>>>>>>> >> >> Hyun Jae Kang (27):
>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>> VTK file
>>>>>>>> >> >> header.
>>>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>>>>> >> >> libraries
>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac
>>>>>>>> OS X
>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>> VTK file
>>>>>>>> >> >> header.
>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>>>> autological-compare
>>>>>>>> >> >> warning.
>>>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>> messages
>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>> messages
>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical
>>>>>>>> data
>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>>>> function
>>>>>>>> >> >>      ENH: Update the Report() function of
>>>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>>>> itkResourceProbe
>>>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>>>> >> >>
>>>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>>>> >> >>      ENH: Improve code coverage for
>>>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>>>> >> >>
>>>>>>>> >> >> Julien Michel (1):
>>>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>>>> >> >> WarpImageFilter
>>>>>>>> >> >>
>>>>>>>> >> >> Junjie Bai (2):
>>>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>>>> LabelObject type
>>>>>>>> >> >>
>>>>>>>> >> >> KWSys Robot (4):
>>>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>>>> >> >>
>>>>>>>> >> >> LIBPNG Upstream (2):
>>>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>>>> >> >>
>>>>>>>> >> >> Laurentiu Nicola (2):
>>>>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>>>> bouncing
>>>>>>>> >> >>
>>>>>>>> >> >> Luc Hermitte (8):
>>>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>>>> 1/...
>>>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>>>> >> >>
>>>>>>>> >> >> Lucas Gandel (4):
>>>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>>>> module.
>>>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>>>> Module
>>>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>>>> >> >>
>>>>>>>> >> >> Mathieu Malaterre (1):
>>>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>>>> >> >>
>>>>>>>> >> >> Matthew McCormick (94):
>>>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>>>> itkCMakeConfigurationTest.
>>>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>> ConditionVariableNoThreads.
>>>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>>>> >> >> ImageToVTKImageFilter.
>>>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>>>> >> >> target_link_libraries.
>>>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with
>>>>>>>> Emscripten-1.
>>>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>>>> AnisotropicDiffusionLBR.
>>>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64
>>>>>>>> Linux.
>>>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>>>> >> >>      COMP: Disable the gold linker for static builds on
>>>>>>>> Ubuntu 14.04.
>>>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja +
>>>>>>>> MSVC.
>>>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>> >> >>      ENH: Add more progress information to
>>>>>>>> IterativeClosestPoint2.
>>>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>>>> TCoordRep.
>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with
>>>>>>>> ITK_WRAPPING_PARSER.
>>>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>>>> ITKTransformMINC.
>>>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>>>> >> >>      ENH: Add wrapping support for building modules
>>>>>>>> externally.
>>>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>>>> externally.
>>>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>> ConditionVariableNoThreads.
>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument
>>>>>>>> type.
>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>> sys.path
>>>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so
>>>>>>>> it gets
>>>>>>>> >> >> installed."
>>>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>>>> LabelMapTypes"
>>>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>>>> advanced.
>>>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>>>> cannot have
>>>>>>>> >> >> override.
>>>>>>>> >> >>      COMP: Add wrapping for
>>>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>>>> ITKModuleHeaderTest.cmake
>>>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param
>>>>>>>> not found.
>>>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>>>> detection.
>>>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>>>> expression
>>>>>>>> >> >> warning.
>>>>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>>>> >> >>      STYLE: Improve namespace bracket style in
>>>>>>>> itkIsConvertible.
>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module
>>>>>>>> test.
>>>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on
>>>>>>>> ITKIOImageBase.
>>>>>>>> >> >>
>>>>>>>> >> >> Michka Popoff (9):
>>>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>> sys.path
>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>> wrapping
>>>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>>>> >> >> ImageFilterBase
>>>>>>>> >> >> module
>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>> wrapping
>>>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>>>> >> >>
>>>>>>>> >> >> Mikhail Isakov (1):
>>>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>>>> baseline image
>>>>>>>> >> >>
>>>>>>>> >> >> Nick Tustison (5):
>>>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>>>> strategy.
>>>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>>>> >> >>
>>>>>>>> >> >> Olivier Commowick (3):
>>>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt
>>>>>>>> VNL eigen
>>>>>>>> >> >> system
>>>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken
>>>>>>>> from pythag
>>>>>>>> >> >> from V3P)
>>>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>>>> >> >>
>>>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>>>> constructor
>>>>>>>> >> >> from
>>>>>>>> >> >> images.
>>>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>>>> FlatStructuringElement.
>>>>>>>> >> >>
>>>>>>>> >> >> Seun Odutola (1):
>>>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>>>> renamed
>>>>>>>> >> >> check
>>>>>>>> >> >> to Check
>>>>>>>> >> >>
>>>>>>>> >> >> Shawn Waldon (1):
>>>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>>>> using
>>>>>>>> >> >> compiler
>>>>>>>> >> >>
>>>>>>>> >> >> Simon Alexander (1):
>>>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>>>> >> >>
>>>>>>>> >> >> Tobias Wood (2):
>>>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug
>>>>>>>> switched off.
>>>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>>>> >> >>
>>>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>>>>> >> >> Transform
>>>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>>>> >> >>
>>>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>>>> >> >>
>>>>>>>> >> >> Zach Williamson (10):
>>>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>>>> GPUPDEDeformableRegistration
>>>>>>>> >> >>      ENH: Use new linking system macros
>>>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>>>> directories
>>>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> -----------------------------------------------------
>>>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>>>> >> >> _____________________________________
>>>>>>>> >> >> Powered by www.kitware.com
>>>>>>>> >> >>
>>>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>>>> >> >>
>>>>>>>> >> >> Kitware offers ITK Training Courses, for more information
>>>>>>>> visit:
>>>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>>>> >> >>
>>>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>> >> >>
>>>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>
>>>>>>
>>>>>>> Powered by www.kitware.com
>>>>>>>
>>>>>>> Visit other Kitware open-source projects at
>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>
>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>
>>>>>> http://kitware.com/products/protraining.php
>>>>>>
>>>>>>
>>>>>>>
>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>
>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>
>>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>>>
>>>>>>>
>>>>>>
>>>>
>>
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From matt.mccormick at kitware.com  Mon Nov 30 20:42:55 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 30 Nov 2015 20:42:55 -0500
Subject: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
 ready for testing!
In-Reply-To: <CAPf2UMT=7HT0=b6S_OPJhvZLFYsVsOMb_oWpP_+pOPOO9EsnrQ@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
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 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
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 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
 <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
 <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>
 <CAPf2UMSqrPnbJfaVZ-Nsw=m0iw8rnPENLsD0x588ekJ7wHG7yw@mail.gmail.com>
 <CAJFNcCQr1F6QjqaC6MFDo66Y609JTzuiCPCHCN6JF0OaNfoB7g@mail.gmail.com>
 <CAPf2UMT=7HT0=b6S_OPJhvZLFYsVsOMb_oWpP_+pOPOO9EsnrQ@mail.gmail.com>
Message-ID: <CALzTN-RaMCFdZZeaBYrU+o1ciubQcY=B_tKrN7+LGrEvim59PQ@mail.gmail.com>

Hi Simon,

I am returning from holiday, and also catching up on activity.


Hyun Jae has taken care of the KWStyle warnings and the data conversion
warning:

  http://review.source.kitware.com/#/c/20430/
  http://review.source.kitware.com/#/c/20446/


And Dzenan and Bill have addressed Wiki examples errors:

  https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3


It is likely that the test failures on your build still remain.  Did you
want to take them on?

Thanks,
Matt

On Mon, Nov 30, 2015 at 2:00 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:

> Looking at the master branch is the right thing to do. I am not doing any
> active development regarding this right now.
>
> On Mon, Nov 30, 2015 at 1:53 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Hi All,
>>
>> I had hoped to be able to look at this over the weekend, but no such
>> luck. Is there somewhere useful I can help with it now?  Not sure what
>> state we are in (or what branch).
>>
>> On Wed, 25 Nov 2015 at 16:41 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> It turns out that all the compile errors were occurring in WikiExamples.
>>> I solved all except one:
>>> ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
>>> file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
>>> 23, but it should be judging from the comment on that line.
>>>
>>> For the rest, I created a pull request:
>>> https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
>>>
>>> On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>>
>>>> Perfect.  I'm under a deadline that is likely to eat the rest of the
>>>> week but if that clears up I'll try and jump in earlier.
>>>>
>>>> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> OK I will work on it for an hour or two now, and I will make a branch
>>>>> and push it to Gerrit so whoever wants can pick up from there and keep
>>>>> updating it.
>>>>>
>>>>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <
>>>>> skalexander at gmail.com> wrote:
>>>>>
>>>>>> Makes sense.  At this point I am unlikely to have time to look at
>>>>>> this until Saturday, but have hopes for a few free hours there.
>>>>>>
>>>>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>>
>>>>>>> Building git master from Nov 23rd with examples and testing enabled
>>>>>>> I get 14 compile errors in VS2015 debug x64. Should we coordinate our
>>>>>>> efforts in fixing them?
>>>>>>>
>>>>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>
>>>>>>>> Two of the three failures look like truncation issues (like
>>>>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158
>>>>>>>> )
>>>>>>>>
>>>>>>>> The other (
>>>>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>>>>  is less obvious.
>>>>>>>>
>>>>>>>> If I have time this evening I'll try and have a look at these.
>>>>>>>>
>>>>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>>>>> why 2015 would trigger but not 2013.
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>>>>> matt.mccormick at kitware.com> wrote:
>>>>>>>>
>>>>>>>>> Ah, cool!  Here:
>>>>>>>>>
>>>>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>>>>
>>>>>>>>> Could you please look into the test failures?
>>>>>>>>>
>>>>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>>>>
>>>>>>>>> Thanks,
>>>>>>>>> Matt
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>>>>> SIMON-LAP,
>>>>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>>>>> one).  VS2013
>>>>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks
>>>>>>>>> like a
>>>>>>>>> > truncation problem on the resuts.
>>>>>>>>> >
>>>>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>>> > wrote:
>>>>>>>>> >>
>>>>>>>>> >> Hi Simon,
>>>>>>>>> >>
>>>>>>>>> >> Thanks for testing.
>>>>>>>>> >>
>>>>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is
>>>>>>>>> green:
>>>>>>>>> >>
>>>>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>>>>> >>
>>>>>>>>> >> Are there any different flags? Could you please submit an
>>>>>>>>> Experimental
>>>>>>>>> >> build?
>>>>>>>>> >>
>>>>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>>>> Submit -C
>>>>>>>>> >> Release
>>>>>>>>> >>
>>>>>>>>> >> from a fresh build tree.
>>>>>>>>> >>
>>>>>>>>> >> Thanks,
>>>>>>>>> >> Matt
>>>>>>>>> >>
>>>>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>>>>> skalexander at gmail.com>
>>>>>>>>> >> wrote:
>>>>>>>>> >> > Looks like a few problems with x64 build on visual studio
>>>>>>>>> 2015 - do you
>>>>>>>>> >> > have
>>>>>>>>> >> > a test machine in this configuration?
>>>>>>>>> >> >
>>>>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>>> >> > wrote:
>>>>>>>>> >> >>
>>>>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>>>>> announce
>>>>>>>>> >> >> that
>>>>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available
>>>>>>>>> for
>>>>>>>>> >> >> testing!
>>>>>>>>> >> >>
>>>>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>>>>> release
>>>>>>>>> >> >> candidate.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> To obtain the source code,
>>>>>>>>> >> >>
>>>>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>>>>> >> >>  cd ITK
>>>>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>>>>> >> >>
>>>>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> A few selected highlights for this release:
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>>>>> generation of
>>>>>>>>> >> >> meshes
>>>>>>>>> >> >> from binary segmentation images, and the
>>>>>>>>> AnisotropicDiffusionLBR module
>>>>>>>>> >> >> improved edge-preserving smoothing.
>>>>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>>>>> continuous
>>>>>>>>> >> >> integration testing on GitHub, and easily add Python
>>>>>>>>> wrapping for your
>>>>>>>>> >> >> C++
>>>>>>>>> >> >> algorithms.
>>>>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a
>>>>>>>>> more
>>>>>>>>> >> >> standard
>>>>>>>>> >> >> installation
>>>>>>>>> >> >> * Improved performance of itk::Image::GetPixel and
>>>>>>>>> operations on
>>>>>>>>> >> >> itk::VariableLengthVector?s
>>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>>> private /
>>>>>>>>> >> >> compile /
>>>>>>>>> >> >> test
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Please test the release candidate and share your experiences
>>>>>>>>> on the
>>>>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>>>>> module
>>>>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>>>>> dependencies for
>>>>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>>>>> command.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>>>>> performs
>>>>>>>>> >> >> on
>>>>>>>>> >> >> your local build system, can be submitted to the dashboard
>>>>>>>>> [2] with:
>>>>>>>>> >> >>
>>>>>>>>> >> >>   mkdir ../ITK-build
>>>>>>>>> >> >>   cd ../ITK-build
>>>>>>>>> >> >>   cmake ../ITK
>>>>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test
>>>>>>>>> -T Submit
>>>>>>>>> >> >>
>>>>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>>>>> command.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Notify the mailing list if there are any unexpected
>>>>>>>>> failures.  Testing
>>>>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>>>>> release.
>>>>>>>>> >> >> We
>>>>>>>>> >> >> would especially like to recognize the new contributors:
>>>>>>>>> Mikhail
>>>>>>>>> >> >> Isakov,
>>>>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>>>>> Seun
>>>>>>>>> >> >> Odutola,
>>>>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>>>>> Williamson,
>>>>>>>>> >> >> Luc
>>>>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>>>>> >> >>
>>>>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> New Features
>>>>>>>>> >> >> ---------------------
>>>>>>>>> >> >>
>>>>>>>>> >> >> Wrapping improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Python 3 supported
>>>>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>>>>> directory in
>>>>>>>>> >> >> the
>>>>>>>>> >> >> ?itk? package
>>>>>>>>> >> >> * Wrapping package size is decreased
>>>>>>>>> >> >> * Better package portability on Mac OSX
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> New Remote Modules
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Cuberille
>>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>>> http://hdl.handle.net/10380/3186
>>>>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>>> http://hdl.handle.net/10380/3505
>>>>>>>>> >> >>    * Web browser reproducibility:
>>>>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Core Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>>>>> source tree
>>>>>>>>> >> >> and
>>>>>>>>> >> >> on GitHub
>>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>>>>> >> >> * New utilities in itk::Math:
>>>>>>>>> >> >>    * AlmostEquals
>>>>>>>>> >> >>    * NotAlmostEquals
>>>>>>>>> >> >>    * ExactlyEquals
>>>>>>>>> >> >>    * NotExactlyEquals
>>>>>>>>> >> >> * New itk::NumericTraits
>>>>>>>>> >> >>    * IsInteger
>>>>>>>>> >> >>    * IsSigned
>>>>>>>>> >> >> * Improved C++11 support
>>>>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Filtering Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>>>>> module
>>>>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>>>>> ITKImageFilterBase
>>>>>>>>> >> >> module
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Registration Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Build Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>>> private /
>>>>>>>>> >> >> compile /
>>>>>>>>> >> >> test
>>>>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>>>>> >> >> * Expat third party library is now name mangled
>>>>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>>>>> >> >> * KWStyle is automatically built and configured when tests
>>>>>>>>> are built
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Performance Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds
>>>>>>>>> members for
>>>>>>>>> >> >> metaprogramming
>>>>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>>>>> >> >>    * itk::mpl::IsSame
>>>>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Documentation Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>>>>> Examples
>>>>>>>>> >> >> * ITK Software Guide improvements
>>>>>>>>> >> >>    * How to use Python wrapping
>>>>>>>>> >> >>    * How to create an ITK module
>>>>>>>>> >> >>    * Improvements to segmentation examples
>>>>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>>>>> >> >>    * Expanded tree container example
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Third Party Library Updates
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * FFTW updated to latest upstream
>>>>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>>>>> >> >> * Build with the latest VTK
>>>>>>>>> >> >> * PNG update to the latest upstream
>>>>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>>>>> >> >> * MINC updated to the latest upstream
>>>>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Style improvements -- ITK gets more stylish with every
>>>>>>>>> release!
>>>>>>>>> >> >>
>>>>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Private copy constructors and operator= use
>>>>>>>>> ITK_DELETE_FUNCTION
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> * *Lots* of important bug fixes
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> * And much more! See details in the log below.
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>>>>> >> >> --------------------------------------------
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Abhishek Tiwari (1):
>>>>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Adam Snyder (1):
>>>>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>>>>> >> >>
>>>>>>>>> >> >> Alexander Leinoff (6):
>>>>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be
>>>>>>>>> resolved.
>>>>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions
>>>>>>>>> to
>>>>>>>>> >> >> itkMath.h
>>>>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>>>>> Math::AlmostEquals
>>>>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>>>>> >> >>
>>>>>>>>> >> >> Arnaud Gelas (5):
>>>>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>>>>> >> >>      ENH: add tests to exercise
>>>>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>>>>> >> >>
>>>>>>>>> >> >> Betsy McPhail (1):
>>>>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>>>>> >> >>
>>>>>>>>> >> >> Bill Hoffman (2):
>>>>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>>>>> >> >> installed.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Bill Lorensen (4):
>>>>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>>>>> >> >>      ENH: Better layout strategy
>>>>>>>>> >> >>
>>>>>>>>> >> >> Brad King (3):
>>>>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and
>>>>>>>>> itksys_ios::*
>>>>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and
>>>>>>>>> itksys_stl::*
>>>>>>>>> >> >>      ENH: Update CMake Policy settings in
>>>>>>>>> Testing/TestExternal project
>>>>>>>>> >> >>
>>>>>>>>> >> >> Bradley Lowekamp (31):
>>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>>> construction
>>>>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>>>>> initializer
>>>>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>>>>> >> >>      ENH: Adding initial update script from used libpng
>>>>>>>>> version.
>>>>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged
>>>>>>>>> code
>>>>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>>>>> affine
>>>>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>>>>> >> >>      BUG: Avoid potential exception in
>>>>>>>>> itk::Object::UnRegister
>>>>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>>> ReferenceImage
>>>>>>>>> >> >> ivar
>>>>>>>>> >> >>      BUG: Increase tolerance for
>>>>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>>>>> BSplineScatter
>>>>>>>>> >> >> change
>>>>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>>>>> >> >> ImageFilterBase
>>>>>>>>> >> >>      BUG: Avoid potential exception in
>>>>>>>>> itk::Object::UnRegister
>>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>>> construction
>>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>>> ReferenceImage
>>>>>>>>> >> >> ivar
>>>>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>>>>> MovingHistogram
>>>>>>>>> >> >> base
>>>>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>>>>> anonymous ns
>>>>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>>>>> Threshold
>>>>>>>>> >> >> range
>>>>>>>>> >> >>      BUG: Adjust intensity tolerance for
>>>>>>>>> PhysicsBasedNonRigid test
>>>>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>>>>> >> >>
>>>>>>>>> >> >> Davis Vigneault (7):
>>>>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>>>>> c++11
>>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>>> >> >>
>>>>>>>>> >> >> D?enan Zuki? (1):
>>>>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>>>>> >> >>
>>>>>>>>> >> >> Eugene Prilepin (1):
>>>>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>>>>> >> >>
>>>>>>>>> >> >> Floris Berendsen (1):
>>>>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Hans Johnson (29):
>>>>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>>>>> >> >>
>>>>>>>>> >> >> Hyun Jae Kang (27):
>>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>>> VTK file
>>>>>>>>> >> >> header.
>>>>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and
>>>>>>>>> shared
>>>>>>>>> >> >> libraries
>>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac
>>>>>>>>> OS X
>>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>>> VTK file
>>>>>>>>> >> >> header.
>>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>>>>> autological-compare
>>>>>>>>> >> >> warning.
>>>>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>>> messages
>>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>>> messages
>>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical
>>>>>>>>> data
>>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>>>>> function
>>>>>>>>> >> >>      ENH: Update the Report() function of
>>>>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>>>>> itkResourceProbe
>>>>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>>>>> >> >>
>>>>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>>>>> >> >>      ENH: Improve code coverage for
>>>>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>>>>> >> >>
>>>>>>>>> >> >> Julien Michel (1):
>>>>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>>>>> >> >> WarpImageFilter
>>>>>>>>> >> >>
>>>>>>>>> >> >> Junjie Bai (2):
>>>>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>>>>> LabelObject type
>>>>>>>>> >> >>
>>>>>>>>> >> >> KWSys Robot (4):
>>>>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>>>>> >> >>
>>>>>>>>> >> >> LIBPNG Upstream (2):
>>>>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>>>>> >> >>
>>>>>>>>> >> >> Laurentiu Nicola (2):
>>>>>>>>> >> >>      PERF: Avoid temporary smartptr in
>>>>>>>>> ProcessObject::GetInput
>>>>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>>>>> bouncing
>>>>>>>>> >> >>
>>>>>>>>> >> >> Luc Hermitte (8):
>>>>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>>>>> 1/...
>>>>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>>>>> >> >>
>>>>>>>>> >> >> Lucas Gandel (4):
>>>>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>>>>> module.
>>>>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>>>>> Module
>>>>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>>>>> >> >>
>>>>>>>>> >> >> Mathieu Malaterre (1):
>>>>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Matthew McCormick (94):
>>>>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>>>>> itkCMakeConfigurationTest.
>>>>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>>> ConditionVariableNoThreads.
>>>>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>>>>> >> >> ImageToVTKImageFilter.
>>>>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>>>>> >> >> target_link_libraries.
>>>>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with
>>>>>>>>> Emscripten-1.
>>>>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>>>>> AnisotropicDiffusionLBR.
>>>>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64
>>>>>>>>> Linux.
>>>>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>>>>> >> >>      COMP: Disable the gold linker for static builds on
>>>>>>>>> Ubuntu 14.04.
>>>>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja +
>>>>>>>>> MSVC.
>>>>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>>>>> >> >>      COMP: Define newSize and oldSize in
>>>>>>>>> VariableLengthVector.
>>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>>> >> >>      ENH: Add more progress information to
>>>>>>>>> IterativeClosestPoint2.
>>>>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>>>>> TCoordRep.
>>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with
>>>>>>>>> ITK_WRAPPING_PARSER.
>>>>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>>>>> ITKTransformMINC.
>>>>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>>>>> >> >>      ENH: Add wrapping support for building modules
>>>>>>>>> externally.
>>>>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>>>>> externally.
>>>>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>>> ConditionVariableNoThreads.
>>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to
>>>>>>>>> 2015-10-20.
>>>>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument
>>>>>>>>> type.
>>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>>> sys.path
>>>>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources
>>>>>>>>> so it gets
>>>>>>>>> >> >> installed."
>>>>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>>>>> LabelMapTypes"
>>>>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>>>>> advanced.
>>>>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>>>>> cannot have
>>>>>>>>> >> >> override.
>>>>>>>>> >> >>      COMP: Add wrapping for
>>>>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>>>>> ITKModuleHeaderTest.cmake
>>>>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param
>>>>>>>>> not found.
>>>>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>>>>> detection.
>>>>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>>>>> expression
>>>>>>>>> >> >> warning.
>>>>>>>>> >> >>      BUG: ITKCommon publically depends on
>>>>>>>>> ITKDoubleConversion.
>>>>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>>>>> >> >>      STYLE: Improve namespace bracket style in
>>>>>>>>> itkIsConvertible.
>>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module
>>>>>>>>> test.
>>>>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on
>>>>>>>>> ITKIOImageBase.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Michka Popoff (9):
>>>>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>>> sys.path
>>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>>> wrapping
>>>>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>>>>> >> >> ImageFilterBase
>>>>>>>>> >> >> module
>>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>>> wrapping
>>>>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>>>>> >> >>
>>>>>>>>> >> >> Mikhail Isakov (1):
>>>>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>>>>> baseline image
>>>>>>>>> >> >>
>>>>>>>>> >> >> Nick Tustison (5):
>>>>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>>>>> strategy.
>>>>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Olivier Commowick (3):
>>>>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt
>>>>>>>>> VNL eigen
>>>>>>>>> >> >> system
>>>>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken
>>>>>>>>> from pythag
>>>>>>>>> >> >> from V3P)
>>>>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>>>>> >> >>
>>>>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>>>>> constructor
>>>>>>>>> >> >> from
>>>>>>>>> >> >> images.
>>>>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>>>>> FlatStructuringElement.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Seun Odutola (1):
>>>>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>>>>> renamed
>>>>>>>>> >> >> check
>>>>>>>>> >> >> to Check
>>>>>>>>> >> >>
>>>>>>>>> >> >> Shawn Waldon (1):
>>>>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>>>>> using
>>>>>>>>> >> >> compiler
>>>>>>>>> >> >>
>>>>>>>>> >> >> Simon Alexander (1):
>>>>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>>>>> >> >>
>>>>>>>>> >> >> Tobias Wood (2):
>>>>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug
>>>>>>>>> switched off.
>>>>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC
>>>>>>>>> and
>>>>>>>>> >> >> Transform
>>>>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>>>>> >> >>
>>>>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Zach Williamson (10):
>>>>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>>>>> GPUPDEDeformableRegistration
>>>>>>>>> >> >>      ENH: Use new linking system macros
>>>>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>>>>> directories
>>>>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> -----------------------------------------------------
>>>>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>>>>> >> >> _____________________________________
>>>>>>>>> >> >> Powered by www.kitware.com
>>>>>>>>> >> >>
>>>>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>>>>> >> >>
>>>>>>>>> >> >> Kitware offers ITK Training Courses, for more information
>>>>>>>>> visit:
>>>>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>>>>> >> >>
>>>>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>> >> >>
>>>>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>>>
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>
>>>>>>>
>>>>>>>> Powered by www.kitware.com
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>>
>>>>>>> http://kitware.com/products/protraining.php
>>>>>>>
>>>>>>>
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>>
>>>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>
>>>
>
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From matt.mccormick at kitware.com  Mon Nov 30 20:46:25 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 30 Nov 2015 20:46:25 -0500
Subject: [ITK-dev] Lingering Valgrind defect
In-Reply-To: <CADZJ4hNP24QUsT3u3E18jPOWtPhB3ohDNmUzyzATAr7t+A4KfA@mail.gmail.com>
References: <CADZJ4hNT8Bv8Uni06ts-=Ajo3gdKNyTxoaLic9iezzhnP8rn0A@mail.gmail.com>
 <CADZJ4hNP24QUsT3u3E18jPOWtPhB3ohDNmUzyzATAr7t+A4KfA@mail.gmail.com>
Message-ID: <CALzTN-S8CTwKaCz4PYAJWdFuK7WCd37yYLNvaFEL79N0ta-hhw@mail.gmail.com>

Hi Bill,

Many thanks for stepping towards a clean Valgrind status!

I tried reproducing the dashboard errors locally, and I could not reproduce
them.  Were you able to reproduce them? What version of valgrind was used?

Thanks,
Matt



On Mon, Nov 30, 2015 at 1:36 PM, Bill Lorensen <bill.lorensen at gmail.com>
wrote:

> If I change the it.Value() and it2.Value() to it.Get() and it2.Get(),
> the defect goes away. Value() returns a reference. I suspect that the
> new comparisons are somehow accessing too much memory.
>
> I'll put a patch in with the replacement.
>
> Bill
>
> On Mon, Nov 30, 2015 at 12:31 PM, Bill Lorensen <bill.lorensen at gmail.com>
> wrote:
> > Folks,
> >
> > This gerrit commit in August
> > http://review.source.kitware.com/#/c/20081/
> >
> > is causing this valgrind defect:
> > https://open.cdash.org/viewDynamicAnalysisFile.php?id=3624555
> >
> > Related to the NotAlmostEquals access. If that is replaced with == the
> > defect gpoes away, but the test fails.
> >
> > If I understood how those new functions work, I might have been able
> > to give a solution.
> >
> > Bill
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
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