[ITK-dev] link failure ITKVideoBridgeOpenCVHeaderTest1 on Ubuntu 14.04

Arnaud Gelas arnaudgelas at gmail.com
Fri Aug 14 03:48:22 EDT 2015 

I have restarted from scratch...

So instead of using gold linker, it is using the default linker, the header
test is now ok, but I still have linking errors:

$ ninja ITKVideoBridgeOpenCV-all
[1/1] Linking CXX executable bin/ITKVideoBridgeOpenCVTestDriver
FAILED: : && /usr/lib/ccache/c++ -Wall -Wcast-align -Wdisabled-optimization
-Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith
-Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow
-Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual
-Wstrict-null-sentinel  -Wno-array-bounds -msse2 -g
Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/ITKVideoBridgeOpenCVTestDriver.cxx.o
Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoCaptureTest.cxx.o
Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVImageBridgeGrayScaleTest.cxx.o
Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVImageBridgeRGBTest.cxx.o
Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoIOTest.cxx.o
Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoIOFactoryTest.cxx.o
Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVBasicTypeBridgeTest.cxx.o
-o bin/ITKVideoBridgeOpenCVTestDriver  -rdynamic
lib/libitkdouble-conversion-4.9.so.1 lib/libITKIOBMP-4.9.so.1
lib/libITKIOGDCM-4.9.so.1 lib/libITKIOGIPL-4.9.so.1
lib/libITKIOImageBase-4.9.so.1 lib/libITKIOJPEG-4.9.so.1
lib/libITKIOMeta-4.9.so.1 lib/libITKIONIFTI-4.9.so.1
lib/libITKIONRRD-4.9.so.1 lib/libITKIOPNG-4.9.so.1
lib/libITKIOTIFF-4.9.so.1 lib/libITKIOVTK-4.9.so.1 lib/libitksys-4.9.so.1
lib/libITKVideoBridgeOpenCV-4.9.so.1
/home/arnaud/install/lib/libopencv_videostab.so.2.4.9
/home/arnaud/install/lib/libopencv_video.so.2.4.9
/home/arnaud/install/lib/libopencv_ts.a
/home/arnaud/install/lib/libopencv_superres.so.2.4.9
/home/arnaud/install/lib/libopencv_stitching.so.2.4.9
/home/arnaud/install/lib/libopencv_photo.so.2.4.9
/home/arnaud/install/lib/libopencv_ocl.so.2.4.9
/home/arnaud/install/lib/libopencv_objdetect.so.2.4.9
/home/arnaud/install/lib/libopencv_nonfree.so.2.4.9
/home/arnaud/install/lib/libopencv_ml.so.2.4.9
/home/arnaud/install/lib/libopencv_legacy.so.2.4.9
/home/arnaud/install/lib/libopencv_imgproc.so.2.4.9
/home/arnaud/install/lib/libopencv_highgui.so.2.4.9
/home/arnaud/install/lib/libopencv_gpu.so.2.4.9
/home/arnaud/install/lib/libopencv_flann.so.2.4.9
/home/arnaud/install/lib/libopencv_features2d.so.2.4.9
/home/arnaud/install/lib/libopencv_core.so.2.4.9
/home/arnaud/install/lib/libopencv_contrib.so.2.4.9
/home/arnaud/install/lib/libopencv_calib3d.so.2.4.9
lib/libitkdouble-conversion-4.9.so.1 lib/libITKIOBMP-4.9.so.1
lib/libITKIOGDCM-4.9.so.1 lib/libITKIOGIPL-4.9.so.1
lib/libITKIOImageBase-4.9.so.1 lib/libITKIOJPEG-4.9.so.1
lib/libITKIOMeta-4.9.so.1 lib/libITKIONIFTI-4.9.so.1
lib/libITKIONRRD-4.9.so.1 lib/libITKIOPNG-4.9.so.1
lib/libITKIOTIFF-4.9.so.1 lib/libITKIOVTK-4.9.so.1 lib/libitksys-4.9.so.1
-lm -lpthread -lrt -ltbb
/home/arnaud/install/lib/libopencv_nonfree.so.2.4.9
/home/arnaud/install/lib/libopencv_ocl.so.2.4.9
/home/arnaud/install/lib/libopencv_gpu.so.2.4.9
/home/arnaud/install/lib/libopencv_photo.so.2.4.9
/home/arnaud/install/lib/libopencv_objdetect.so.2.4.9
/home/arnaud/install/lib/libopencv_legacy.so.2.4.9
/home/arnaud/install/lib/libopencv_video.so.2.4.9
/home/arnaud/install/lib/libopencv_ml.so.2.4.9
/home/arnaud/install/lib/libopencv_calib3d.so.2.4.9
/home/arnaud/install/lib/libopencv_features2d.so.2.4.9
/home/arnaud/install/lib/libopencv_highgui.so.2.4.9
/home/arnaud/install/lib/libopencv_imgproc.so.2.4.9
/home/arnaud/install/lib/libopencv_flann.so.2.4.9
/home/arnaud/install/lib/libopencv_core.so.2.4.9 lib/libITKVideoIO-4.9.so.1
lib/libITKIOImageBase-4.9.so.1 lib/libITKVideoCore-4.9.so.1
lib/libITKCommon-4.9.so.1 lib/libitkdouble-conversion-4.9.so.1
lib/libitksys-4.9.so.1 lib/libITKVNLInstantiation-4.9.so.1 -lvnl_algo -lvnl
-lv3p_netlib -lnetlib -lvcl -lpthread -lm -ldl
-Wl,-rpath,/home/arnaud/source/build-itk/lib:/home/arnaud/install/lib
-Wl,-rpath-link,/home/arnaud/source/build-itk/lib && :
Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoCaptureTest.cxx.o:
In function `itk::OpenCVVideoIOFactory::New()':
/home/arnaud/source/itk/Modules/Video/BridgeOpenCV/include/itkOpenCVVideoIOFactory.h:46:
undefined reference to `itk::OpenCVVideoIOFactory::OpenCVVideoIOFactory()'
Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoIOTest.cxx.o:
In function `itk::OpenCVVideoIO::New()':
/home/arnaud/source/itk/Modules/Video/BridgeOpenCV/include/itkOpenCVVideoIO.h:48:
undefined reference to `itk::OpenCVVideoIO::OpenCVVideoIO()'
Modules/Video/BridgeOpenCV/test/CMakeFiles/ITKVideoBridgeOpenCVTestDriver.dir/itkOpenCVVideoIOTest.cxx.o:
In function `itk::ObjectFactory<itk::OpenCVVideoIO>::Create()':
/home/arnaud/source/itk/Modules/Core/Common/include/itkObjectFactory.h:60:
undefined reference to `typeinfo for itk::OpenCVVideoIO'
/home/arnaud/source/itk/Modules/Core/Common/include/itkObjectFactory.h:62:
undefined reference to `typeinfo for itk::OpenCVVideoIO'
collect2: error: ld returned 1 exit status
ninja: build stopped: subcommand failed.



On Fri, Aug 14, 2015 at 8:21 AM, Arnaud Gelas <arnaudgelas at gmail.com> wrote:

> Hi Matt,
>
> It happened while directly building ITK with OpenCV 2.4.9, without any
> superbuild...
> Thanks for the patch, but that does not solve it...
>
> I wonder if it could have something to do with the new linking system
> (note it uses COMPILE_DEPENDS) ?
>
> Thanks,
> Arnaud
>
> On Thu, Aug 13, 2015 at 6:41 PM, Matt McCormick <
> matt.mccormick at kitware.com> wrote:
>
>> Hi Arnaud,
>>
>> Is this with building the examples with the superbuild?  I think I was
>> getting this error, too.  Here is a patch that should address it:
>>
>>   http://review.source.kitware.com/#/c/20077/
>>
>> Thanks,
>> Matt
>>
>> On Thu, Aug 13, 2015 at 11:40 AM, Arnaud Gelas <arnaudgelas at gmail.com>
>> wrote:
>> > Hi all,
>> >
>> > I have just tried building ITK with BridgeOpenCV on Ubuntu 14.04 and I
>> get
>> > the following link error
>> >
>> > [2/2] Linking CXX executable bin/ITKVideoBridgeOpenCVHeaderTest1
>> >
>> > [...]
>> >
>> > lib/libITKVideoBridgeOpenCV-4.9.so.1: error: undefined reference to
>> > 'itk::VideoIOBase::VideoIOBase()'
>> > lib/libITKVideoBridgeOpenCV-4.9.so.1: error: undefined reference to
>> > 'itk::VideoIOBase::~VideoIOBase()'
>> > lib/libITKVideoBridgeOpenCV-4.9.so.1: error: undefined reference to
>> > 'itk::VideoIOBase::PrintSelf(std::ostream&, itk::Indent) const'
>> > lib/libITKVideoBridgeOpenCV-4.9.so.1: error: undefined reference to
>> > 'typeinfo for itk::VideoIOBase'
>> > collect2: error: ld returned 1 exit status
>> >
>> > I have checked these methods are implemented in itkVideoIOBase.cxx...
>> >
>> > Any idea?
>> >
>> > Thanks
>> > Arnaud
>> >
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