[ITK-dev] ITK 4.7 Release Candidate 2 has been tagged!

Matt McCormick matt.mccormick at kitware.com
Tue Dec 16 02:42:34 EST 2014


On behalf of the Insight Toolkit community, we are proud to announce that
ITK 4.7.0 release candidate 2 has been tagged and is available for testing!
Please test the release candidate in the coming days for an imminent
release.

To obtain the source code,

 git clone http://itk.org/ITK.git
 cd ITK
 git checkout -q --detach v4.7rc02

For more details, please see the Git documentation
<http://www.itk.org/Wiki/ITK/Git> [1].

A few highlights for this release: all ITK examples from the Software
Guide, Wiki Examples, and SphinxExamples are new indexed and crossed linked
in Doxygen <http://itk.org/Insight/Doxygen/html/examples.html>. So now when
you go to your favorite filter or other object, say the ResampleImageFilter
<http://www.itk.org/Doxygen/html/classitk_1_1ResampleImageFilter.html>,
there is a large selection of examples in the examples sections. This
should make it much easier to fine sample code on how to use an ITK class!
TIFF IO has undergone a significant cleanup and speed-up, and now TIFF tags
are read into the MetaDataDictionary. Three new Remote Modules are
available, for gradient computation, DICOM IO, and QuadEdgeMesh filtering.
Python wrapping, CMake configuration, and registration continue to improve.
A new, experimental thread pool is available -- to enable set the
ITK_USE_THREADPOOL or call
itk::MultiThreader::SetGlobalDefaultUseThreadPool(true).


Please test the release candidate and share your experiences on the mailing
list, issue tracker, and Gerrit Code Review. Please help identify issues
submitting an Experimental build to the dashboard
<http://open.cdash.org/index.php?project=Insight> [2] with:

 ctest -M Experimental  -T Configure -T Build -T Test -T Submit

and notifying the mailing list.  Testing your own applications against the
RC is also appreciated.


Congratulations and well done to the 29 contributors to this release. We
would especially like to recognize the new contributors, Gert Wollny,
Girish Mallya, Christopher Mullins, Umang B, David T. Chen, Danny Perry,
Johan Andruejol, and Ismael Belghiti.


The final release is scheduled for December 18th.

[1] http://www.itk.org/Wiki/ITK/Git

[2] http://itk.org/Insight/Doxygen/html/examples.html

[3] http://www.itk.org/Doxygen/html/classitk_1_1ResampleImageFilter.html

[2] http://open.cdash.org/index.php?project=Insight



New Features
------------------

* Documentation Improvements

 - Update Software Guide registration examples to ITKv4 framework

 - Wiki and Sphinx examples are indexed in Doxygen

 - Clean Software Guide dashboard build

* Filtering Improvements

 - New Laplacian deformation filter’s for QuadEdgeMesh’s

   - IJ article: http://hdl.handle.net/10380/3410

- FFTComplexToComplexImageFilter out of Review, Vnl, FFTW implementations

- Faster recursive Gaussian on VectorImage

* ImageIO improvements

 - PNG sCAL unit support

 - TIFF IO performance greatly improved

 - TIFF tags read into Image MetaDataDictionary

 - MetaIO updated

 - Better support for system GDCM

* Infrastructure improvements

 - New method to erase a MetaDataDictionary entry

 - New global method to set physical space tolerance

 - New, experimental thread pool support

 - NumericTraits::Zero and ::One are deprecated in favor of ::ZeroValue()
and ::OneValue()

 - VTK bridge modules only request required VTK modules

* New Remote Modules

 - Higher Order Accurate Gradient

   - http://hdl.handle.net/10380/3231

 - IO Transform DCMTK

   - http://hdl.handle.net/10380/3468

 - Subdivision Quad Edge Mesh Filters

   - http://hdl.handle.net/10380/3307

* Registration improvements

 - LandmarkBasedTransformInitializer supports BSplineTransform

 - Transverse inverse consistency increased

 - Automatic initialization of the transform center for multi-stage
registrations

 - Sparse point B-spline field estimate

 - Mutual information faster, lower memory usage

* Wrapping improvements

 - Wrapping now builds without type warnings

 - pygccxml bumped to 1.6.2

 - Latest GCCXML

 - CMake wrapping infrastructure cleanup

 - Build with Ninja CMake generator

 - New GetTypes() and GetTypesAsList() methods

 - ITK_WRAP_PYTHON is exposed in ITKConfig.cmake



* Many style improvements -- ITK gets more stylish with every release!

* Improved code coverage -- we are over 85%!

* *Lots* of important bug fixes

* And much more! See details in the log below.

List of changes since v4.7-rc01

--------------------------------------

Ali Ghayoor (1):
     DOC: Revise the registration examples of ITKSoftwareGuide

Arnaud Gelas (3):
     ENH: Adding SubdivisionQuadEdgeMeshFilters to ITK as remote module
     COMP: address clang -Winconsistent-missing-override in ITKQuadEdgeMesh
     COMP: fix warnings on dashboard for Subdivision remote module

Bradley Lowekamp (5):
     BUG: Fix segfault when setting displacement field as null
     BUG: Don't enable SSE rounding with OSX and gccxml
     BUG: Add portable access to Tiff field name
     BUG: Fix conversion compilation error
     BUG: Rename remote module FDFImageIO -> IOFDF

Christopher Mullins (6):
     STYLE: Fix line length in OpenJPEG license for 80 character.
     DOC: Finish the ImageLinearIteratorWithIndex example.
     DOC: Text and picture problems, book2
     BUG: Fix text in margin issues
     DOC: Edits for the beginning of chapter 5, Statistics
     DOC: Fix empty code block.

Cory Quammen (1):
     COMP: Avoid including VTK_USE_FILE within ITK

Kent Williams (1):
     ENH: Add test to exercise issue with Transform::GetInverse

Matthew McCormick (7):
     BUG: Register AzimuthElevationToCartesianTransform to factories.
     DOC: Update texture feature class references.
     BUG: Fix texture feature correlation computation for constant image.
     STYLE: Put ImageToImageFilterCommon in its own file.
     BUG: Wrap ImageToImageFilterCommon.
     STYLE: Put ImageSourceCommon in its own file.
     COMP: Add missing itkImageRegionSplitterBase to ImageSourceCommon.

Michka Popoff (1):
     ENH: Add CVD and CVF types to VectorIndexSelectionCastImageFilter
wrappings

Ziv Yaniv (1):
     COMP: fixed warnings from gcc4.1.2, made implicit casts explicit


List of changes since v4.6.0

--------------------------------------

Alexander Schmidt-Richberg (1):

     ENH: Updated Remote Module VariationalRegistration to new git tag

Ali Ghayoor (10):

     ENH: Make ITKv4 compatible with ITKSoftwareGuide

     ENH: Add GetCurrentStepLength to RegularStepGradDescentOptv4

     ENH: Convert three ImageRegistration Examples to ITKv4

     ENH: Add multi-Res and multistage registration Examples to ITKv4

     ENH: Convert DeformableReg examples to ITKv4 reg framework

     BUG: Expand a test to reflect multi-metric registration bug

     BUG: Fix multi metric point sampling bug in ImageRegistrationMethodv4

     ENH: Add direct initialization to SyN registration

     ENH: Direct initialization of SyN by restoring the state

     ENH: LandmarkBasedTransformInitializer supports BSplineTransformType

Arnaud Gelas (15):

     COMP: use find_package(VTK COMPONENTS) for LevelSetsv4Visualization

     ENH: Importing Laplacian Deformation for QuadEdgeMesh

     DOC: Add more explanation about SmoothingQuadEdgeMeshFilter's usage

     ENH: SmoothingQuadEdgeMeshFilter::SetCoefficientMethod calls Modified()

     ENH: Add progress report in itk::SmoothingQuadEdgeMeshFilter

     BUG: fix gdcm version in GDCMImageIO.

     COMP: missing cast when calling gdcm::DataElement::SetByteValue

     COMP: missing cast when calling gdcm::DataElement::SetByteValue

     ENH: increase LaplacianDeformation code coverage

     STYLE: use typedef rather than inheritance

     BUG: GDCMImageIO was not working properly when m_KeepOriginalUID is
false

     BUG: split include directories into appropriate cmake variables HDF5

     BUG: missing gdcm libraries when using system GDCM

     DOC: fix doxygen documentaiton for
itk::LaplacianDeformationQuadEdgeMeshFilter

     ENH: Add one method to erase a tag into MetaDataDictionary

Bill Lorensen (5):

     ENH: Specify required VTK modules

     COMP: Wiki examples require additional vtk modules

     ENH: Modify WikiExamples remote config

     COMP: Bad test signature

     COMP: Update tag for wiki examples

Brad King (6):

     COMP: Fix vxl_config_macros usage of CMake check macros

     ENH: Use if(DEFINED) to simplify conditions

     COMP: Fix vxl_config_macros checks broken by refactoring

     COMP: Fix one more vxl_config_macros check broken by refactoring

     BUG: Fix itk_module_config for repeated calls

     BUG: Fix itk_module_config for repeated calls

Bradley Lowekamp (52):

     ENH: Adding License file from upstream MetaIO

     ENH: Adding script to update MetaIO from upstream

     ENH: Remove ITK MetaIO to prepare for upstream import

     PERF: Remove dynamically allocated temporary in evaluate method

     COMP: Fix variable type for Set/Get macros

     BUG: Implement ITK Style Singleton design pattern

     ENH: Add no throw exception specification for UnRegister methods

     COMP: Must specify order as "noexcept override"

     BUG: Add GetInverse for IdentityTransform

     ENH: Adding SetIdentity method to base DisplacementField class

     BUG: Remove unused redefinition of NULL

     BUG: Don't print to std::cout in PrintSelf

     ENH: Prefer the PrintSelfObjectMacro for printing nested objects

     BUG: Use METER of sCAL scale unit

     BUG: Use PNG_SCALE_METER for PNG sCAL unit

     BUG: Use METER of sCAL scale unit

     BUG: Use PNG_SCALE_METER for PNG sCAL unit

     COMP: Fix signed to unsigned int comparison

     BUG: Fix overflows computing size of read tiff image

     ENH: Extract TiffReaderInternal to separate file

     ENH: Refactor ReadTwoSamplePerPixelImage into template function

     ENH: Refactor GenericReadImage into template function

     BUG: Remove Zeiss 2-channel support code in TIFFImageIO ( and
LSMImageIO )

     ENH: Refactor method to convert RGBA image to output buffer

     ENH: Refactor duplicated code to read a page

     BUG: Fix right oriented tiff images

     BUG: Remove dead separated plannar code, add test

     STYLE: Fix minor kwstyle defects in test and test results

     BUG: Use array delete operator for array new allocations

     ENH: add arbitrary TIFF TAGs to meta-data dictionary

     ENH: Reduce code duplicate in TIFFImageIO::ReadCurrentPage

     BUG: Address Coverity warning about null pointer dereferences

     ENH: Remove support for TIFF tile as 3D and dead code

     ENH: RGBA read images should stay unchanged.

     BUG: Override method to MakeOutput by name

     ENH: Refactor per pixel conversion function to per scan-line method

     PERF: Refactor color table lookup

     BUG: Adding missing parentheses around boolean expression

     ENH: adding TIFFImageIO test for RGB palette images

     PERF: Improve recursive Gaussian perfromance with VectorImages

     ENH: Query libtiff to determine compression support

     BUG: Support TIFF tiled image with TIFFReadRGBAImage

     BUG: Use SizeValueType for length of scanline

     PERF: Store causal results directly in output buffers

     COMP: Add explicit conversion to const char

     COMP: Explicitly add override to GetNameOfClass method

     COMP: Address internal segmentation fault with Intel compiler

     ENH: Adding method to set global physical space tolerance

     COMP: Explicitly add override to GetNameOfClass method

     BUG: Add new TypeMacro for non-overloaded classes

     BUG: Fix obscure race condition on access thread pool initialization

     BUG: Updating FDFImageIO remote module

Christopher Mullins (15):

     COMP: Allows latex to compile for ITKSoftwareGuide

     COMP: Allows latex to compile for ITKSoftwareGuide

     COMP: Wrap MeshBase templates

     COMP: Wrap MeshBase templates

     COMP: Fix warning in BlockMatchingImageFilter

     STYLE: Line lengths in examples should be no longer than 80 chars.

     COMP: Wrap the remaining MeshBase and MeshToMeshFilter types.

     COMP: Fix LaTeX warnings.

     STYLE: Fix formatting/punctuation errors.

     STYLE: Formatting and punctuation fixes.

     DOC: Edits for Book 2 Chapter 1 documentation in the Examples.

     DOC: Edits for book 2 chapter 2.

     DOC: More chapter 2 edits

     DOC: Book 2 Chapter 3 edits (part 1)

     DOC: book 2 chapter 4 Segmentation edits

Danny Perry (2):

     BUG: adding test for vnl_sparse_matrix::mult()

     BUG: size of q buffer should actually be (this->rows())*pcols.

David T. Chen (1):

     DOC: Fixed HistogramThresholdImageFitler

Dirk Padfield (1):

     BUG: Corrected processing of last sigma

GCC-XML Upstream (1):

     ENH: pygccxml v1.6.2 (reduced)

Gert Wollny (1):

     COMP: Fix SSE2 build errors with WrapITK on GCC 4.9. (ForRelease)

Girish Mallya (1):

     BUG: Tests added for BinaryImageToLabelMapFilter for single-row images.

Hans Johnson (24):

     COMP: Add tolerance for comparing floating point

     PERF: Remove non-threadable algorithm components

     COMP: Add tolerance for comparing floating point

     PERF: Remove non-threadable algorithm components

     PERF: Remove large foot print of PDF derivatives.

     PERF: Revert Remove large foot print of PDF derivatives.

     STYLE: Test against almost equal for floating point values

     STYLE: Non-exact floating point testing

     PERF: Distribute initialization per thread buffers

     ENH: Remove unnecessary mutable qualifier.

     STYLE: Remove comment with no meaning.

     ENH: Moved accumlator logic to main MI class

     ENH: Allow staggering of accumulations per thread.

     PERF: Zero reset thread buffers during finalize

     BUG: Syntax error in comment

     PERF: Add non-blocking mutex locking.

     ENH: Use TryLock minimize thread stalls

     BUG: ThreadedIndexedContainerPartitioner is inclusive

     STYLE: Remove include_regular_expression from Examples

     BUG: Demonstrate Inv(Inv(T)) != T

     BUG: Ensure Inv(Inv(T)) == T for transforms

     COMP: Valgrind detects uninitialized memory read

     COMP: Missing required base class API component

     ENH: Expand interface for selecting threadpool

Ismael Belghiti (1):

     DOC: Spelling Error in PatchBasedDenoisingBaseImageFilter

Jim Miller (1):

     STYLE: Removing what appears to be a temporary file

Johan Andruejol (1):

     ENH: Fix normalization for null vectors and return the norm

Jon Haitz Legarreta (1):

     ENH: New test for itkLabelShapeOpeningImageFilter

Kent Williams (9):

     COMP: use find_package(VTK COMPONENTS) to specify just needed VTK
Components

     BUG: ImageSources/test/CMakeLists.txt incorrect library var reference

     COMP: Fix coverity defects related to RegistrationV4 examples

     COMP: silence warning of vnl_vector_fixed_ref::assert_size

     COMP: Fix various Coverity warnings

     COMP: Fix a typo in an error message print statement.

     COMP: itk::Command-derived class used pointless dynamic_cast.

     PERF: Don't recompute InternalInverse repeatedly

     COMP: Correct orientation/spacing for Philips MultiFrame

Mark Hiner (2):

     ENH: Update SCIFIO remote module hash

     BUG: Fix duplicate variables in Windows

Matthew McCormick (105):

     DOC: Fix itkSetGetDecoratedInputMacro Doxygen macro.

     ENH: Move FFTComplexToComplexImageFilter out of Review.

     ENH: Add VnlComplexToComplexFFTImageFilter.

     BUG: Use fixed seed for Vnl FFT tests for repeatibility.

     ENH: Bump CMakeLists.txt version to 4.7.0.

     BUG: ArchiveTestingData.py future imports must occur at the beginning.

     BUG: Do not run vnl_test_na with broken libc++.

     DOC: Remove Image2.cxx reference from Book 2.

     DOC: Fix Software Guide page overruns in IterativeClosestPoint3.cxx.

     DOC: Remove references to Book 1 sections from Book 2.

     DOC: Make BinaryThresholdImageFilter not floating.

     DOC: Fix Software Guide figure caption for FlipImageFilter.

     DOC: Avoid duplicate figure description in ResampleImageFilter2.cxx.

     DOC: Remove duplicate figure in
LaplacianRecursiveGaussianImageFilter2.cxx.

     DOC: ImageRandomConstIteratorWithIndex table reference.

     DOC: Fix Software Guide page overruns in
IterativeClosestPoint{1,2}.cxx.

     DOC: Remove duplicate text in LaplacianRecursiveGaussian example.

     BUG: Uninitialized m_TransformDirection in
ComplexToComplexFFTImageFilter.

     BUG: Fix offset[2] in PointSetToSpatialObjectDemonsRegistrationTest.

     STYLE: Fix style in VoronoiDiagram2D.

     BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.

     BUG: Bump GCCXML to 2014-08-06.

     BUG: Remove unused m_{SplitEpsilon,SigmoidPrimeOffset}.

     BUG: Fix Win MultiThreader check for successful process creation.

     BUG: Fix VTKPolyDataMeshIO writing for 2D second rank tensor.

     COMP: Fix ImageRegistration8RegisteredSlice.png baseline name.

     DOC: itk::statistics -> itk::Statistics.

     COMP: Fix transform type for ITKv3/IterativeClosestPoint2.

     BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.

     COMP: Improve const correctness of
GradientRecursiveGaussianImageFilter.

     BUG: Call clear instead of empty on PatchBasedDenoising EmptyCaches().

     BUG: Fix Size() in ImageToListSampleAdaptor for VectorImage's.

     COMP: ThreadJob NULL not defined.

     BUG: Fix alpha assignment for RGBA TIFF.

     COMP: Remove unused typedefs in LevelSetsv4Visualization.

     COMP: Remove unused typedef's in VtkGlue.

     ENH: Mark BSplineWarping2Test as RUNS_LONG.

     BUG: Fix Nifti IO read with large images.

     COMP: Remove call for non-existent variable in Nifti debugging.

     BUG: Close the file on Read and Write in HDF5TransformIO.

     BUG: Remove InsightLegacy test code from TransformHDF5Test.

     ENH: Add {Set,Get}TransformIO for TransformFile{Reader,Writer}.

     STYLE: Use SeriesUIDContainerType and FileNamesContainerType

     ENH: Allow specification of orthogonality tolerance in rigid
transforms.

     BUG: TransformFileReader does not clear its TransformList.

     BUG: Prevent dangling pointer in HDF5TransformIO.

     COMP: Do not use _stat64 with MinGW-32.

     BUG: Improve thread-safety and performance of
PCAShapeSignedDistanceFunction.

     DOC: itk::statistics -> itk::Statistics.

     DOC: Remove duplicate text in LaplacianRecursiveGaussian example.

     DOC: Fix Software Guide page overruns in
IterativeClosestPoint{1,2}.cxx.

     COMP: Address LaplacianDeformation Doxygen warnings.

     BUG: TransformFileReader does not clear its TransformList.

     BUG: Prevent dangling pointer in HDF5TransformIO.

     COMP: Fix missing prefix in ITKv3ImageRegistration20Test.

     BUG: Do not return SmartPointers in TimeVaryingVelocityFieldTransform

     COMP: Do not wrap the FixedArray of Image SmartPointer's.

     COMP: Add missing wrapping for TransformIOBaseTemplate.

     COMP: Mark DeformableRegistration6Test as RUNS_LONG.

     STYLE: Improve style in BinaryImageToLabelMapFilter.

     BUG: Fix BinaryImageToLabelMapFilter on 1D image.

     ENH: Improve precision of the joint PDF sum

     BUG: Fix BinShrinkImageFilter for different input/output image types.

     COMP: Fix transform type for ITKv3/IterativeClosestPoint2.

     BUG: Use -py3 when building wrapping for Python 3.

     COMP: Add missing wrapping for TransformIOBaseTemplate.

     DOC: Improve ImageRegistration4 grammar.

     ENH: Add IOTransformDCMTK Remote module.

     BUG: gdcm::StringFilter recognizes backslash delimiter.

     DOC: Add migration guide for GDCM Rescale slope intercept apply on
write.

     COMP: Remove unused typedef's in GPU code.

     STYLE: Improve style of HoughTransform2DLinesImageFilter example.

     COMP: Use ConceptChecking for IterativeInverse dimension check.

     COMP: Wrap TransformIOBaseTemplate for const SmartPointer.

     COMP: Add warning exceptions for third party pcre, swig, gccxml.

     ENH: Bump ITK version to 4.6.1.

     BUG: Add missing ITK_OVERRIDE to ITKImageeSources module.

     BUG: Remove GaussianImageSource members shadowing GenerateImageSource.

     STYLE: Style fixes to ITKImageSources module.

     BUG: GaussianSpatialFunction and GaborImageSource use
SpacePrecisionType.

     BUG: Do not perform itk_download_attempt_check when not building ITK.

     DOC: Update GDCMImageIO rescale slope intercept doc.

     BUG: Only register requestion IO COMPONENT modules.

     BUG: Fix wrapping .i, .idx CMake dependencies.

     COMP: Add VTK Python module when wrapping ITKVtkGlue.

     STYLE: Remove NULL definition in itkVoronoiDiagram2DGenerator.

     STYLE: VoronoiDiagram2DGenerator defines a VoronoiDiagramType typedef.

     COMP: Add missing VTK module dependency for LevelSetsv4Visualization.

     BUG: By default, do not create any fixed parameters.

     STYLE: Remove trivial method comments in itkTransform.hxx.

     BUG: PolylineMask Filter's GenerateData is protected / virtual.

     ENH: Add HigherOrderAccurateGradient Module.

     BUG: Use input RequestedRegion Index in SliceBySliceImageFilter
internal.

     COMP: Remove extra semi-colon, variable scope in DCMTKFileReader.

     STYLE: Style fixes for Transform classes.

     DOC: Increase Doxygen LOOKUP_CACHE_SIZE.

     BUG: MatrixOffsetTransformBase::GetFixedParameters not thread safe.

     DOC: Index Wiki examples with Doxygen.

     COMP: Bump SphinxExamples remote module.

     DOC: Index Sphinx examples in Doxygen.

     COMP: Remove old java examples.

     COMP: Remove duplicate DiffusionTensor3DReconstruction example
reference.

     COMP: Address GradientAnisotropicDiffusionImageFilter example settings.

     COMP: Bump Sphinx Examples remote.

     COMP: Bump WikiExamples remote.

MetaIO Maintainers (1):

     MetaIO (reduced)

Michka Popoff (40):

     ENH: Fixes for python 3 support

     BUG: Add VTK_VERSION for older VTK versions

     BUG: Improve SWIG version check

     COMP: Add wrapping for ThreadPool and ThreadJob

     COMP: Remove unimplemented DestroyPool method

     COMP: Fix itkVnlComplexToComplexFFTImageFilter wrapping

     COMP: Do not hide pygccxml warnings

     ENH: Update links in readme file

     BUG: Improve SWIG version check

     BUG: Add VTK_VERSION for older VTK versions

     STYLE: Remove trailing whitespaces

     STYLE: Set ITK_USE_SYTEM_ZLIB and ITK_USE_SYTEM_SZIP

     BUG: Fix memory leak in MetaImageIO after exception

     ENH: Add script to update pygccxml from upstream

     BUG: Update VTK minimum version (for release)

     BUG: Fix memory leak in MetaImageIO after exception

     ENH: Remove Sun OS compatibility for the wrappings

     COMP: Fix for conversion to non-pointer like type warning

     STYLE: LabelObject style

     DOC: Remove broken link from LabelObject class description

     ENH: Do not setup the python tests if not asked

     ENH: Add new GetTypes() and GetTypesAsList() methods to the template
class

     COMP: Fix CMP0054 warnings in wrappings

     STYLE: Remove old cmake < 2.8.4 specific code

     STYLE: Remove old cmake < 2.8.5 specific code

     ENH: Update to PCRE 8.36

     COMP: Refactor Wrapping setup and fix legacy warnings

     ENH: Add wrapping configuration to ITKConfig.cmake

     STYLE: Some minor code cleanup in the wrapping setup

     DOC: Fix typo in RelabelComponentImageFilter

     ENH: Deprecate VectorResampleImageFilter

     DOC: Add migration guide for ::Zero and ::One

     ENH: Deprecate ::Zero and ::One

     ENH: Add option to disable sorting by size in
itkRelabelComponentImageFilter

     ENH: Add Vector and RGB wrapping to linear interpolator

     STYLE: Remove SORT macro in wrappings

     COMP: Fix warning for InterpolateImageFunction wrapping

     COMP: Add a check for Blocks in GPU module

     COMP: Bump SCIFIO to fix test build warnings

     COMP: Fix wrapping of itkImageFunctionBase

Nick Tustison (7):

     BUG:  Need to explicitly specify spline order.

     ENH:  Initializing the transform center.

     BUG:  Need to check the dynamic cast before any calls.

     ENH:  Adding modifications for point set metrics.

     BUG:  Need to specify TInternalComputationValueType for default metric.

     ENH:  Adding sparse points to B-spline field estimate.

     BUG:  Uninitialized variables.

Richard Beare (1):

     ENH: Include TIFF tags in the MetaDataDictionary

Taylor Braun-Jones (1):

     BUG: Fix SliceBySliceImageFilter doesn't propagate information
internally

Umang B (1):

     ENH: Use thread pool to dispatch multithreading tasks

Vivien Delmon (2):

     BUG: ExtractImageFilter::CollapseToSubMatrix fix

     ENH: Add a test on extracted directions in CollapseToSubMatrix mode

Vladimir S. FONOV (1):

     BUG: Fixing incorrect MINC style inverse transform


-----------------------------------------------------

Errors or omissions? Please fix them here:

https://docs.google.com/document/d/1V0zNgFrm_GyF1jOC00fMq-7VBXk4hHmHL62qByfeKP4/edit?usp=sharing
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