[Insight-developers] [Insight-users] [ITK] Software Guide generation process problems
Matt McCormick
matt.mccormick at kitware.com
Tue Oct 1 10:28:13 EDT 2013
Hi Jon,
Thanks for the note and for your efforts with the Software Guide. The
build is definitely a bear, but improvements will come incrementally.
Building in Release configuration instead of Debug on Windows should
definitely help.
It looks like there error is due to a Python 3 incompatiblity. I will
work on a patch.
Thanks,
Matt
On Tue, Oct 1, 2013 at 7:43 AM, Jon Haitz Legarreta
<jhlegarreta at vicomtech.org> wrote:
> Hi there,
>
> so I finally got to successfully configure and generate the ITKSoftwareGuide
> project, provided that the ITKSoftwareGuide_SUPERBUILD flag is ON.
>
> However, it failed to compile (on Visual Studio 2010) :-S Although the ITK
> superbuild compiled OK, the SW Guide generation failed. It took almost 19
> hours to compile the whole thing on an Intel Core i5-2320 @ 3.00 GHz, 4 GB
> of RAM, 64-bit Win 7. I cannot remember ITK having taken so long to compile
> on its own... Besides, it needed around 36 GB of my HDD. My goodness.
>
> Anyway, there seems to be some error with a python command according to the
> build output (sorry, I should have set the system to send the compilation
> result to the dashboard :-S):
>
> 3> ========== Build: 602 succeeded, 0 failed, 0 up-to-date, 0 skipped
> ==========
> 3>
> 3> No install step for 'ITKv4'
> 3> Completed 'ITKv4'
> 8>------ Build started: Project: ITKSoftwareGuide, Configuration: Debug x64
> ------
> 8> Building Custom Rule C:/SDKs/ITK/ITKSoftwareGuide/CMakeLists.txt
> 8> CMake does not need to re-run because
> C:\SDKs\ITK\itkSoftwareGuideBin\CMakeFiles\generate.stamp is up-to-date.
> 8> Creating directories for 'ITKSoftwareGuide'
> 8> No download step for 'ITKSoftwareGuide'
> 8> No update step for 'ITKSoftwareGuide'
> 8> No patch step for 'ITKSoftwareGuide'
> 8> Performing configure step for 'ITKSoftwareGuide'
> 8> Not searching for unused variables given on the command line.
> 8> -- PRE_RUN_PYTHON ART GENERATION.
> 8> -- Running: C:/Python33/python.exe
> C:/SDKs/ITK/ITKSoftwareGuide/SoftwareGuide/Examples/RunExamples.py
> --itkSource C:/SDKs/ITK/itkSoftwareGuideBin/ITKv4 --itkBuildDir
> C:/SDKs/ITK/itkSoftwareGuideBin/ITKv4-build --itkExecDir
> C:/SDKs/ITK/itkSoftwareGuideBin/bin/Debug --SWGuidBaseOutput
> C:/SDKs/ITK/itkSoftwareGuideBin/ITKSoftwareGuide-build/SoftwareGuide
> 8> File
> "C:/SDKs/ITK/ITKSoftwareGuide/SoftwareGuide/Examples/RunExamples.py", line
> 186
> 8> print self.GetCommandLine()
> 8> ^
> 8> SyntaxError: invalid syntax
> 8> CMake Error at SoftwareGuide/CMakeLists.txt:161 (message):
> 8> POST_RUN_PYTHON ART GENERATION 1.
> 8>
> 8>
> 8> -- Configuring incomplete, errors occurred!
> 8>C:\Program Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets(151,5): error
> MSB6006: "cmd.exe" exited with code 1.
> 9>------ Skipped Build: Project: ALL_BUILD, Configuration: Debug x64 ------
> 9>Project not selected to build for this solution configuration
> ========== Build: 2 succeeded, 1 failed, 0 up-to-date, 6 skipped ==========
>
>
>
> On the other hand, the process fails to be configured when the
> ITKSoftwareGuide_SUPERBUILD flag is OFF and I decide to use an external ITK
> (USE_SYSTEM_ITK flag ON) may have already compiled (including examples) in
> my HDD (ITK 4.2.1). In this case, CMake yields the following error:
>
> PRE_RUN_PYTHON ART GENERATION.
>
> Running: C:/Python33/python.exe
> C:/SDKs/ITK/ITKSoftwareGuide/SoftwareGuide/Examples/RunExamples.py
> --itkSource C:/SDKs/ITK/itk-4.2.1 --itkBuildDir C:/SDKs/ITK/itkBin-4.2.1
> --itkExecDir C:/SDKs/ITK/itkBin-4.2.1/bin --SWGuidBaseOutput
> C:/SDKs/ITK/itkSoftwareGuideBin_/SoftwareGuide
>
> CMake Error at SoftwareGuide/CMakeLists.txt:161 (message):
>
> POST_RUN_PYTHON ART GENERATION 1.
>
> Configuring incomplete, errors occurred!
>
>
>
> So again, it seems a problem with a python script.
>
> Any thoughts?
>
> Thank you,
> JON HAITZ
>
>
> P.S.: This is part of a recent conversation I was holding with some of the
> ITK community members about the ITK Software Guide generation process. Matt
> McCormick suggested moving it to the mailing list (which was the primary
> purpose, but my original message to the list got held by a moderator
> approval message due to its length; did not include the original attachment
> here). You will find the history of the conversation from its very beginning
> further below.
> Sorry for the length.
>
>
>
> On 25 September 2013 21:41, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi Jon,
>>
>> The FindLATEX.cmake patch has been merged, so
>>
>> cd /c/path/to/ITKSoftwareGuide
>> git checkout master
>> git pull
>>
>> should make it possible to do a clean build without issues related to
>> ITK_EXECUTABLES_DIR or ps2pdf.
>>
>> We should probably start moving these conversations to the
>> insight-users mailing list so other can benefit from them, too.
>>
>> Thanks,
>> Matt
>>
>> On Wed, Sep 25, 2013 at 3:09 PM, Constantine Z <mnkz at leeds.ac.uk> wrote:
>> > Hi Jon.
>> >
>> >> OK, as for the ITK_EXECUTABLES_DIR variable, it is indeed in
>> >> SoftwareGuide/CMakeLists.txt. However, it is somehow not exposed to the
>> >> user in CMake. Furthermore, Matt's pointed patch was replacing
>> >> /find_path(ITK_EXECUTABLES_DIR/ for /find_file(ITK_EXECUTABLES_DIR/,
>> >>
>> >> which I am not so sure was intended.
>> >
>> >
>> > That's definitely the right thing to do. find_path sorta guesses the bin
>> > directory with all examples executables by looking just for one of the
>> > examples.
>> >
>> > Regards,
>> > Constantine
>> >
>> >
>
>
>
>
> ---------- Forwarded message ----------
> From: Constantine Z <mnkz at leeds.ac.uk>
> Date: 25 September 2013 17:09
> Subject: Re: Fwd: [ITK] Software Guide generation process problems
> To: Jon Haitz Legarreta <jhlegarreta at vicomtech.org>
> Cc:
>
>
> Hi Jon.
>
>> OK, as for the ITK_EXECUTABLES_DIR variable, it is indeed in
>> SoftwareGuide/CMakeLists.txt. However, it is somehow not exposed to the
>> user in CMake. Furthermore, Matt's pointed patch was replacing
>> /find_path(ITK_EXECUTABLES_DIR/ for /find_file(ITK_EXECUTABLES_DIR/,
>>
>> which I am not so sure was intended.
>
>
> That's definitely the right thing to do. find_path sorta guesses the bin
> directory with all examples executables by looking just for one of the
> examples.
>
> Regards,
> Constantine
>
>
>
> ---------- Forwarded message ----------
> From: Constantine Z <mnkz at leeds.ac.uk>
> Date: 25 September 2013 17:06
> Subject: Re: Fwd: [ITK] Software Guide generation process problems
> To: Jon Haitz Legarreta <jhlegarreta at vicomtech.org>
> Cc:
>
>
> Hi John,
>
>
>> As for the super-build, I understand that it allows to build ALL ITK
>> from the SoftwareGuide project/solution. Correct me if I am wrong and if
>> it just builds the ITK examples.
>
>
> No, you are right. ITK gets downloaded and built in the binary output
> directory for the ITKSoftwareGuide project.
>
>
>> I used patches Matt was mentioning in hist first email:
>>
>> [1]
>>
>> https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/commit/2e5c7375b80cc3fee54ab062043a2afa47b5f986
>
>
> Those are old patches, which have been committed to the build by now [I'm
> pretty sure].
>
>
>> However, there are things that I do not get to understand: In the above
>> patch the SoftwareGuide/CMakeLists.txtis different from the
>> SoftwareGuide/CMakeLists.txtin the patch above (the one you point
>> Constantine).
>>
>> Furthermore, there are no such files (present in the patch you point
>> Constantine) in my clone:
>> SoftwareGuide/CMake/FindLATEX.cmake
>> SoftwareGuide/Latex/CMakeLists.txt
>
>
> That's why you need to get this patch I mentioned earlier:
>
> http://review.source.kitware.com/#/c/12774/
>
> On the patch page (mid-way through the page) there's a git command line with
> the word 'Download' net to it which would get the patch on your system.
> There's even a button to copy it in the buffer! :) When you get (git) that
> patch, you'll find the missing FindLATEX.cmake where it's supposed to be.
>
>
>> When configuring the CMake, since I have not yet switched to git for
>> ITK, and I usually download the sources as a .zip and then build them, I
>> have chosen to use an external ITK. To be precise, I am using ITK 4.2.1.
>> Thus, I checked USE_SYSTEM_ITK and set
>>
>> ITK_BINARY_DIR
>> C:/SDKs/ITK/itkBin-4.2.1 (contains the project created by CMake and
>> compiler's output)
>> ITK_DIR
>> C:/SDKs/ITK/itkBin-4.2.1 (contains the project created by CMake and
>> compiler's output)
>> ITK_SOURCE_DIR
>> C:/SDKs/ITK/itk-4.2.1 (contains the source code)
>
>
> I didn't try it with external compiled ITK, so I can't comment, but what you
> say looks OK.
>
>
>> As to what Matt said, there is no ITK_EXECUTABLES_DIR variable as far as
>> I can see, but the compiler complains about it: the generation seemed to
>> be successful, but when compiling the project, Visual Studio (2010)
>> yielded the following error:
>>
>> 8>------ Build started: Project: ITKSoftwareGuide, Configuration: Debug
>> x64 ------
>> 8> Building Custom Rule C:/SDKs/ITK/ITKSoftwareGuide/CMakeLists.txt
>> 8> CMake does not need to re-run because
>> C:\SDKs\ITK\itkSoftwareGuideBin\CMakeFiles\generate.stamp is up-to-date.
>> 8> Creating directories for 'ITKSoftwareGuide'
>> 8> No download step for 'ITKSoftwareGuide'
>> 8> No update step for 'ITKSoftwareGuide'
>> 8> No patch step for 'ITKSoftwareGuide'
>> 8> Performing configure step for 'ITKSoftwareGuide'
>> 8> Not searching for unused variables given on the command line.
>> 8> -- PRE_RUN_PYTHON ART GENERATION.
>> 8> -- Running: C:/Python33/python.exe
>> C:/SDKs/ITK/ITKSoftwareGuide/SoftwareGuide/Examples/RunExamples.py
>> --itkSource C:/SDKs/ITK/itk-4.2.1 --itkBuildDir C:/SDKs/ITK/itkBin-4.2.1
>> --itkExecDir ITK_EXECUTABLES_DIR-NOTFOUND --SWGuidBaseOutput
>> C:/SDKs/ITK/itkSoftwareGuideBin/ITKSoftwareGuide-build/SoftwareGuide
>> 8> File
>> "C:/SDKs/ITK/ITKSoftwareGuide/SoftwareGuide/Examples/RunExamples.py",
>> line 186
>> 8> print self.GetCommandLine()
>> 8> ^
>> 8> SyntaxError: invalid syntax
>> 8> CMake Error at SoftwareGuide/CMakeLists.txt:159 (message):
>> 8> POST_RUN_PYTHON ART GENERATION 1.
>> 8>
>> 8>
>> 8> -- Configuring incomplete, errors occurred!
>
>
> The ITK_EXECUTABLES_DIR is initialised in SoftwareGuide/CMakeLists.txt.
> Maybe try without external ITK for now?
>
> Regards,
> Constantine
>
>
>
> On 25 September 2013 15:13, Jon Haitz Legarreta <jhlegarreta at vicomtech.org>
> wrote:
> Dear Constantine,
>
> many thanks for your answer.
>
>
> On 25 September 2013 13:48, Constantine Zakkaroff <mnkz at leeds.ac.uk> wrote:
>>
>>
>> I'm not sure if anyone mentioned this, but it seems to me you are using an
>> older version of the SoftwareGuide code? ANYONE, PLEASE CORRECT ME IF I'M
>> WRONG. I see nothing like that in the code available through git:
>>
>> git clone
>> https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide.git
>>
>> Do you follow the instructions in:
>>
>>
>> https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/blob/master/README.md
>>
>> I had to figure out git and such to get started. The project is configured
>> as a super-build project, where the dependencies (ITK) are built firs at
>> then the examples are run to generate the images and figures for the
>> Software Guide.
>
>
> Yes you are right; I was using the old SoftwareGuide generation system,
> which dated back to 2004 :-S I was just not aware that there was a new
> system under git.
>
> I followed the instructions and apparently successfully cloned the
> repository.
>
> As for the super-build, I understand that it allows to build ALL ITK from
> the SoftwareGuide project/solution. Correct me if I am wrong and if it just
> builds the ITK examples.
>
>>
>> Matt fixed it the latest patch (FindLATEX.cmake):
>>
>> http://review.source.kitware.com/#/c/12774/
>
>
>
> I used patches Matt was mentioning in hist first email:
>
> [1]
> https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/commit/2e5c7375b80cc3fee54ab062043a2afa47b5f986
>
>
> However, there are things that I do not get to understand: In the above
> patch the SoftwareGuide/CMakeLists.txtis different from the
> SoftwareGuide/CMakeLists.txtin the patch above (the one you point
> Constantine).
>
> Furthermore, there are no such files (present in the patch you point
> Constantine) in my clone:
> SoftwareGuide/CMake/FindLATEX.cmake
> SoftwareGuide/Latex/CMakeLists.txt
>
>
> When configuring the CMake, since I have not yet switched to git for ITK,
> and I usually download the sources as a .zip and then build them, I have
> chosen to use an external ITK. To be precise, I am using ITK 4.2.1. Thus, I
> checked USE_SYSTEM_ITK and set
>
> ITK_BINARY_DIR
> C:/SDKs/ITK/itkBin-4.2.1 (contains the project created by CMake and
> compiler's output)
> ITK_DIR
> C:/SDKs/ITK/itkBin-4.2.1 (contains the project created by CMake and
> compiler's output)
> ITK_SOURCE_DIR
> C:/SDKs/ITK/itk-4.2.1 (contains the source code)
>
>
> As to what Matt said, there is no ITK_EXECUTABLES_DIR variable as far as I
> can see, but the compiler complains about it: the generation seemed to be
> successful, but when compiling the project, Visual Studio (2010) yielded the
> following error:
>
> 8>------ Build started: Project: ITKSoftwareGuide, Configuration: Debug x64
> ------
> 8> Building Custom Rule C:/SDKs/ITK/ITKSoftwareGuide/
> CMakeLists.txt
> 8> CMake does not need to re-run because
> C:\SDKs\ITK\itkSoftwareGuideBin\CMakeFiles\generate.stamp is up-to-date.
> 8> Creating directories for 'ITKSoftwareGuide'
> 8> No download step for 'ITKSoftwareGuide'
> 8> No update step for 'ITKSoftwareGuide'
> 8> No patch step for 'ITKSoftwareGuide'
> 8> Performing configure step for 'ITKSoftwareGuide'
> 8> Not searching for unused variables given on the command line.
> 8> -- PRE_RUN_PYTHON ART GENERATION.
> 8> -- Running: C:/Python33/python.exe
> C:/SDKs/ITK/ITKSoftwareGuide/SoftwareGuide/Examples/RunExamples.py
> --itkSource C:/SDKs/ITK/itk-4.2.1 --itkBuildDir C:/SDKs/ITK/itkBin-4.2.1
> --itkExecDir ITK_EXECUTABLES_DIR-NOTFOUND --SWGuidBaseOutput
> C:/SDKs/ITK/itkSoftwareGuideBin/ITKSoftwareGuide-build/SoftwareGuide
> 8> File
> "C:/SDKs/ITK/ITKSoftwareGuide/SoftwareGuide/Examples/RunExamples.py", line
> 186
> 8> print self.GetCommandLine()
> 8> ^
> 8> SyntaxError: invalid syntax
> 8> CMake Error at SoftwareGuide/CMakeLists.txt:159 (message):
> 8> POST_RUN_PYTHON ART GENERATION 1.
> 8>
> 8>
> 8> -- Configuring incomplete, errors occurred!
>
>
> Thanks again.
>
> Sincerely,
> JON HAITZ
>
>
>
> On 25 September 2013 13:48, Constantine Zakkaroff <mnkz at leeds.ac.uk> wrote:
> Hi Jon,
>
> Yes, I've been grinding away trying to get the ITK Software Guide built on
> Windows, in collaboration with Matt. I think we are getting there.
>
>> 1.- First, the /SoftwareGuide/Examples/CMakeLists.txt contains
>> references to some examples that no longer exist (either because there
>> is no Patent folder in ITK4 or because the examples themselves no
>> longer exist/have been moved elsewhere):
>>
>> * ${ITK_SOURCE_DIR}/Examples/Patented/IterativeClosestPoint1.cxx
>> * ${ITK_SOURCE_DIR}/Examples/Patented/IterativeClosestPoint2.cxx
>> * ${ITK_SOURCE_DIR}/Examples/Patented/IterativeClosestPoint3.cxx
>> * ${ITK_SOURCE_DIR}/Examples/Patented/FuzzyConnectednessImageFilter.cxx
>> * ${ITK_SOURCE_DIR}/Examples/Patented/HybridSegmentationFuzzyVoronoi.cxx
>> * ${ITK_SOURCE_DIR}/Examples/Statistics/EuclideanDistance.cxx
>> * ${ITK_SOURCE_DIR}/Examples/Statistics/GaussianDensityFunction.cxx
>> * ${ITK_SOURCE_DIR}/Examples/Statistics/ImageToListAdaptor.cxx
>> * ${ITK_SOURCE_DIR}/Examples/Statistics/ListSampleToHistogramFilter.cxx
>> *
>> ${ITK_SOURCE_DIR}/Examples/Statistics/ListSampleToHistogramGenerator.cxx
>> * ${ITK_SOURCE_DIR}/Examples/Statistics/PointSetToListAdaptor.cxx
>> *
>> ${ITK_SOURCE_DIR}/Examples/Statistics/SampleToHistogramProjectionFilter.cxx
>
>
> I'm not sure if anyone mentioned this, but it seems to me you are using an
> older version of the SoftwareGuide code? ANYONE, PLEASE CORRECT ME IF I'M
> WRONG. I see nothing like that in the code available through git:
>
> git clone https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide.git
>
> Do you follow the instructions in:
>
> https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/blob/master/README.md
>
> I had to figure out git and such to get started. The project is configured
> as a super-build project, where the dependencies (ITK) are built firs at
> then the examples are run to generate the images and figures for the
> Software Guide.
>
>
>> 2.- According to the /SoftwareGuide/README.txt, some additional data
>> should be downloaded in order to successfully insert some figures. This
>> data was originally found at
>> ftp://public.kitware.com/pub/itk/Data/BrainWeb/
>>
>> However, the link seems not to be working. Thus, I hoped to continue
>> working without it.
>
>
> Manual downloading in not require any longer. The data from BraindWed is
> downloaded automatically as a part of the super-build.
>
>> 3.- I have installed all required components for Windows:
>>
>> * Latex, BibTeX (MiKTeX 2.9)
>> * Perl (ActiveState Perl, downloaded from here
>> <http://www.perl.org/get.html>)
>> * ImageMagick (ImageMagick-6.8.6-9-Q16-x64-dll, downloaded from here
>> <http://www.imagemagick.org/script/binary-releases.php>)
>> * fig2dev (fig2dev3.2.3d, downloaded from here
>>
>> <http://tams-www.informatik.uni-hamburg.de/applets/jfig/download.html>)
>> * transfig (TransFig 3.2.4, downloaded from here
>> <http://www.tucows.com/preview/8734/TransFig> :-S found no other
>> "better" place)
>> * ps2pdf, dvipdf, ps2pdf, dvips (these are bundled in MiKTeX),
>> Ghostscript (9.10) libraries
>
>
> fig2dev and transfig are not required any longer. Gohstscript is not
> required if MiKTex is installed.
>
>
>> However, the /SoftwareGuide/CMakeLists.txt seems not to look
>> for/configure the location of neither transfig nor Ghostscript (although
>> this last is also bundled in MiKTeX).
>
>
> Matt fixed it the latest patch (FindLATEX.cmake):
>
> http://review.source.kitware.com/#/c/12774/
>
> I'm planning to update the instructions for the top-level README.md file
> once the build is working.
>
> I think the wiki page on the subject of building Software Guide perhaps can
> be updated with more detailed instructions and notes.
>
> Many thanks,
> Constantine
>
>
>
> On 21 September 2013 18:52, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
> Hi Jon,
>
> Sorry we missed your message, and thanks for your interest in contributing!
>
> Hans Johnson has done a lot of work updating the build process. There is
> now a superbuild (it automatically builds/configures ITK), and the build
> system is now in Python instead of Perl, which make things much easier.
>
> Constantine has been helping test the Windows build. This week, we merged a
> patch that allows us to build on Windows again [1], although Windows does
> take more effort. Manual setting of the CMake configuration variable
> ITK_EXECUTABLES_DIR may still be required. The dependencies have changed
> slightly. Hans may correctly, but I think fig2dev and transfig are no
> longer required. An additional requirement is pygments for one of the
> MikTeX syntax highlighting packages -- a link on how to install that can be
> found in SoftwareGuide/README.txt.
>
> The contribution process is the same as ITK with Gerrit Code Review [2]
>
> Please let us know if you have any questions or issues.
>
> Thanks,
> Matt
>
>
> [1]
> https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/commit/2e5c7375b80cc3fee54ab062043a2afa47b5f986
> [2]
> https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/blob/master/README.md
>
>
> On Sat, Sep 21, 2013 at 8:59 AM, Luis Ibanez <luis.ibanez at kitware.com>
> wrote:
> Hi Jon,
>
> Thanks for your interest in the ITK Software Guide.
>
> The Guide is currently being restructured.
>
> You will find its current form in Github at:
> https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide
>
>
> Thanks
>
>
> Luis
>
>
> ---------- Forwarded message ----------
> From: Jon Haitz Legarreta <jhlegarreta at vicomtech.org>
> Date: 10 September 2013 11:00
> Subject: [ITK] Software Guide generation process problems
> To: Insight-users <insight-users at itk.org>
>
>
> Hi there,
> I was trying to inspire a software user's guide generation process on ITK's
> Software Guide generation process.
>
> I have read some old post concerning the issue:
> http://itk-users.7.n7.nabble.com/Insight-Users-Guide-PDF-Generation-td767.html
>
> And found the software generation repository at this address:
> http://www.itk.org/cgi-bin/viewcvs.cgi/SoftwareGuide/?root=InsightDocuments
>
> I have noticed that it has not been changed since some time. I guess this is
> due to the fact that all itk users (including me until very recently) use
> the on-line PDF document or the doxygen-generated documentation.
>
> I don't know whether anybody has tried to reproduce the software guide
> generation process or whether kitware no longer supports this feature.
>
> The thing is that CMake fails to correctly configure the SoftwareGuide
> project.
>
> I am using Windows 7 64-bit and ITK 4.2.1. I am not using Cygwin.
>
> There are several issues here, some related to ITKv4 compatibility/migration
> issues:
>
> 1.- First, the /SoftwareGuide/Examples/CMakeLists.txt contains references to
> some examples that no longer exist (either because there is no Patent folder
> in ITK4 or because the examples themselves no longer exist/have been moved
> elsewhere):
>
> ${ITK_SOURCE_DIR}/Examples/Patented/IterativeClosestPoint1.cxx
> ${ITK_SOURCE_DIR}/Examples/Patented/IterativeClosestPoint2.cxx
> ${ITK_SOURCE_DIR}/Examples/Patented/IterativeClosestPoint3.cxx
> ${ITK_SOURCE_DIR}/Examples/Patented/FuzzyConnectednessImageFilter.cxx
> ${ITK_SOURCE_DIR}/Examples/Patented/HybridSegmentationFuzzyVoronoi.cxx
> ${ITK_SOURCE_DIR}/Examples/Statistics/EuclideanDistance.cxx
> ${ITK_SOURCE_DIR}/Examples/Statistics/GaussianDensityFunction.cxx
> ${ITK_SOURCE_DIR}/Examples/Statistics/ImageToListAdaptor.cxx
> ${ITK_SOURCE_DIR}/Examples/Statistics/ListSampleToHistogramFilter.cxx
> ${ITK_SOURCE_DIR}/Examples/Statistics/ListSampleToHistogramGenerator.cxx
> ${ITK_SOURCE_DIR}/Examples/Statistics/PointSetToListAdaptor.cxx
> ${ITK_SOURCE_DIR}/Examples/Statistics/SampleToHistogramProjectionFilter.cxx
>
> Commenting or deleting these entries from the CMakeLists.txt is enough to
> solve this issue, at least apparently.
>
> 2.- According to the /SoftwareGuide/README.txt, some additional data should
> be downloaded in order to successfully insert some figures. This data was
> originally found at ftp://public.kitware.com/pub/itk/Data/BrainWeb/
>
> However, the link seems not to be working. Thus, I hoped to continue working
> without it.
>
> 3.- I have installed all required components for Windows:
>
> Latex, BibTeX (MiKTeX 2.9)
> Perl (ActiveState Perl, downloaded from here)
> ImageMagick (ImageMagick-6.8.6-9-Q16-x64-dll, downloaded from here)
> fig2dev (fig2dev3.2.3d, downloaded from here)
> transfig (TransFig 3.2.4, downloaded from here :-S found no other "better"
> place)
> ps2pdf, dvipdf, ps2pdf, dvips (these are bundled in MiKTeX), Ghostscript
> (9.10) libraries
>
> However, the /SoftwareGuide/CMakeLists.txt seems not to look for/configure
> the location of neither transfig nor Ghostscript (although this last is also
> bundled in MiKTeX).
>
> 4.- Once the CMake has all the variables set, the configuration process
> fails due to some invalid escape sequences introduced by the
> /SoftwareGuide/Examples/CMakeLists.txt. The CMake configuration result is
> attached as a txt file.
>
> I have been looking for some forward slash in that CMakeLists.txt that may
> be causing these problems at the lines pointed in the CMake configuration
> result, but found none.
>
> Any help would be highly appreciated.
>
> Sincerely,
> JON HAITZ
>
>
> P.S.: Sorry for the length of the message.
>
>
>
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