[Insight-developers] Patches for v4.4.2 point release

Wed Aug 28 00:22:04 EDT 2013

Hi,

Requesting feedback for patches to include on the release branch for v4.4.2.

Currently:

Matthew McCormick (3):
      BUG: Add missing ITKOpenJPEG dependency for ITKReview Module.
      COMP: ITKOpenJPEG EXCLUDE_FROM_ALL.
      BUG: Fix Module_Review enable with a single configure.

Sean McBride (1):
      COMP: Fixed compiler error in C++11

Xiaoxiao Liu (1):
      BUG: Exclude ITKReview when ITK_USE_REVIEW if off.

Although the last one will be reverted to prevent unexpected behavior
on a bugfix release.

Patches since v4.4.1 release:

Ali Ghayoor (3):
      ENH: transform reader/writer filters are templated on output
precision type
      BUG: Fix memory leak error in itkHDF5TransformIO
      DOC: Migration guide is updated for multi precision of ITK

Arnaud Gelas (9):
      BUG: Check that region for thread is not empty
      COMP: use concept checking instead of runtime checking
      BUG: Fix failure in InteractivePause test
      ENH: updating level sets sparse layer visualization
      ENH: Upgrade doxygen config file
      BUG: fix KWStyle errors in itkVTKVisualize* files
      BUG: Fix visualization of 3D level-sets
      ENH: Add Concept checking for 2D Visualization
      ENH: Use partial template specialization for iso value vis

Bill Lorensen (1):
      ENH: Reduce test times for Debug builds

Brad King (1):
      MetaIO: Removed the deprecated _CM24 CMake variables

Bradley Lowekamp (14):
      ENH: Enabling shared IO modules on windows
      DOC: adding Examples directory to ITK Doxygen
      DOC: remove explicit doxygen example commands now automatically added
      BUG: add installation of Export headers
      BUG: Remove ENABLED_SHARED option for IOSpatialObjects module
      BUG: Fix linking of factory register method on static windows
      STYLE: Fix some style errors reported in continuous test
      BUG: Remove Spurious testing file
      COMP: Use relative path for generate output header parameter
      BUG: Enable slice-by-slice streaming for ShrinkImageFilter
      STYLE: Fix ShrinkImageStreamingTest style
      PERF: Flip filter use increment in scanline direction
      PERF: Additional FlipImageFilter performance by using input iterator
      PERF: Move test to IntegratedTest directory

Brian Helba (10):
      STYLE: Unify style of "operator delete[]"
      STYLE: Remove superfluous return statements at the end of void functions
      STYLE: Fix miscellaneous KWStyle errors
      ENH: Remove superfluous IMMEDIATE option from CMake CONFIGURE_FILE
      STYLE: Replace Unicode in ITK source with ASCII homoglyphs
      ENH: Use MINC API to free memory allocated by MINC
      PERF: Allow delete of NULL pointers
      PERF: Refactor some deletion code
      ENH: Refactor KWStyle testing
      COMP: Make find_package usage compatible with < CMake-2.8.8

C Cagatay Bilgin (1):
      DOC: Modify ShapeLabelObject comments.

Cyrille Faucheux (1):
      BUG: Fix support for RLE-compressed & upper-left BMP.

Dirk Padfield (2):
      BUG: ConstPointer assigned to non-const raw pointer
      ENH: Otsu code replaced with OtsuMultiple call

Gordon Kindlmann (1):
      BUG: airOneLinify() infinite loop, synch w/ Teem for its 1.11.1 release

Irina Vidal-Migallon (3):
      ENH: Remote module: GPU and CPU Smoothing recursive YVV Gaussian Filter
      ENH: Remote module: GPU and CPU Smoothing recursive YVV Gaussian Filter
      ENH: YVV remote module - Add EXCLUDE_FROM_ALL option to itk_module.

Jim Miller (2):
      BUG: GDCMImageIO ignore image orienations from MetaDataDictionary
      BUG: Two tests were writing to same filename.

Jonathan Guinet (1):
      BUG: {Opening,Closing}ByReconstructionImageFilter information propagation

Kent Williams (2):
      BUG: Guard against Divide by Zero
      BUG: Row/Column assignment into ImageDimensions was wrong

Kishore Mosaliganti (6):
      ENH: Allow visualization of initial level-set
      ENH: Add Set/GetNumberOfThreads for evolution
      ENH: New binary mask term with test
      ENH: Set/Get number of threads for Whitaker evolution class
      BUG: Non-square images mesh not specified correctly
      ENH: Set the scaling factor of the level-set function

Luis Ibanez (4):
      STYLE: Fixed miscelaneous style errors.
      DOC: Removed Doxygen \example tags for Tests.
      COMP: Fix warnings in matrix division by scalar.
      COMP: Attempt to fix warning about \param.

Mark Hiner (1):
      STYLE: update SCIFIO module name

Matthew McCormick (23):
      BUG: Add missing ITKOpenJPEG dependency for ITKReview Module.
      COMP: ITKOpenJPEG EXCLUDE_FROM_ALL.
      COMP: Fix invalid Doxygen LaTeX formula.
      BUG: Fix Module_Review enable with a single configure.
      COMP: Wrap cost functions for templated precision.
      BUG: Fix Module_Review enable with a single configure.
      DOC: Fix GradientDescentOptimizer doc grammar.
      BUG: Using consistent naming for Transform template name change.
      BUG: Remove unused QUASI_NEWTON_STEP_ERROR.
      COMP: Do not try to include float.h for MinGW.
      STYLE: TScalarType -> TScalar
      COMP: Fix NIFTI CMake variable separation warning.
      ENH: Use Transform::Clone() in ImageToImageMetric.
      COMP: Remove redundant Typename structs. #3195.
      STYLE: Fix include guard in level set visualization.
      ENH: Use file(COPY .. instead of exec_process.
      COMP: Fix transform wrapping errors with ITK_WRAP_double OFF.
      DOC: Fix spelling errors in FourierDescriptors1.cxx.
      BUG: Fix ITK_USE_REVIEW compatibility set syntax.
      COMP: Avoid MetaIO config conflict with USE_SYSTEM_GDCM.
      BUG: itkSingleLevelSetsv4WhitakerImage2DTest output clobber.
      ENH: Test conversion writing float transform with templateless writer.
      BUG: BMPImageIO buffer size computation.

Nick Tustison (1):
      ENH:  Added B-spline registration test.

Sean McBride (1):
      COMP: Fixed compiler error in C++11

Sureerat Reaungamornrat (1):
      ENH: Make SetFixedImageRegion a virtual function

Taylor Braun-Jones (1):
      COMP: Remove unused TransformFileWriter::m_Precision ivar

Xiaoxiao Liu (11):
      COMP: Relax tolerance for a regression test.
      ENH: Exclude ITKGDCM module when system GDCM is ON.
      BUG: Exclude ITKReview when ITK_USE_REVIEW if off.
      BUG: A fix for using sys installed GDCM.
      BUG: ITK_USE_Review did not turn Review module ON.
      ENH: Simplify the steps to build remote modules.
      ENH: Turn remote module LSTK off by default.
      ENH: Deprecate ITK_USE_REVIEW.
      DOC: Migration guide for ITK_USE_REVIEW deprecation.
      ENH: Remote module names need to be consistent.
      COMP: New baseline image for MultiResImageRegistrationTest.

Planned to include for the bugfix release if they apply cleanly on the
release branch:

Arnaud Gelas:
      BUG: Check that region for thread is not empty
      BUG: Fix failure in InteractivePause test

Dirk Padfield:
      BUG: ConstPointer assigned to non-const raw pointer

Jim Miller:
      BUG: GDCMImageIO ignore image orienations from MetaDataDictionary
      BUG: Two tests were writing to same filename.

Jonathan Guinet:
      BUG: {Opening,Closing}ByReconstructionImageFilter information propagation

Kent Williams:
      BUG: Guard against Divide by Zero
      BUG: Row/Column assignment into ImageDimensions was wrong

Matthew McCormick:
      COMP: Do not try to include float.h for MinGW.
      COMP: Remove redundant Typename structs. #3195.
      BUG: itkSingleLevelSetsv4WhitakerImage2DTest output clobber.

Sean McBride:
      COMP: Fixed compiler error in C++11

Xiaoxiao Liu:
      COMP: Relax tolerance for a regression test.
      ENH: Exclude ITKGDCM module when system GDCM is ON.
      BUG: A fix for using sys installed GDCM.
      COMP: New baseline image for MultiResImageRegistrationTest.

Please reply in this thread if the proposed additional patches are not
simple bug fixes that address critical issues or if some patches were
left out.

Thanks,
Matt