[Insight-developers] [Insight-users] Submit ITK modules to Insight Journal

[Bradley Lowekamp]

OK,

So where is the official recommendation on how to create an IJ article with an ITKv4 Submodule?

It sounds like I should get the IJ template just for the text, and just create a standard ITKv4 module, and submit that via the git URL?

Thanks for the clarifications.
Brad

On Apr 4, 2013, at 9:54 AM, Xiaoxiao Liu <xiaoxiao.liu at kitware.com> wrote:

>  Turns out that  IJ already has the capability of accepting the git repo url at the time of submission, at the 
> "Upload Source Code" step. Sorry about my earlier  msg.
> 
> Here is an example of :
> http://www.insight-journal.org/browse/publication/852#
> 
> On the right side you can see:
> - Download Source code (zip file we saved)
> - Source code repository (shows the git url)
> - Github (link to the cloned repository).
> 
> 
> On Wed, Apr 3, 2013 at 1:17 PM, Xiaoxiao Liu <xiaoxiao.liu at kitware.com> wrote:
> 
> 
> 
> On Wed, Apr 3, 2013 at 1:04 PM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
> Xiaoxiao,
> 
> I was looking at the instructions for the source module:
> 
> https://github.com/InsightSoftwareConsortium/InsightJournalTemplate/tree/ModularTemplate/Source
> 
> It looks like I need to copy my current ITK Module into this IJ Template directory, then copy it back into ITK to build it... Seems like too much coping.
> 
>  
> Say I have a module I have been using and want to write an IJ article on it:
> 
> https://github.com/blowekamp/itkOBBLabelMap
> 
> Could I just add a submodule in the Source directory? Do I have to use the "MyIJSubmission" for the name of my module?
> 
> 
> >> You don't need to copy your ITK module into the IJ template directory. You should be able to just upload the module folder "itkOBBLabelMap" as it is, no need to use "MyIJSubmission".  Take a look at the LSTK example, look into the zip file, you will see.   I will update the instructions to make it clear.
>  
> Would something like the following work:
> git clone --origin template git at github.com:InsightSoftwareConsortium/InsightJournalTemplate.git ijOBBLabelMap
> cd  ijOBBLabelMap
> git submodule add https://github.com/blowekamp/itkOBBLabelMap Source/itkOBBLabelMap
> 
>  >> Why you are using submodule here? Right now, we still require contributors to upload the code tar ball instead of providing a git url. It is an excellent idea though to use a git repo link instead. This will need some extra work on the IJ server end. Let me check how difficult it is and report back.
>  
> Thanks,
> Brad
> 
> 
> 
> On Apr 3, 2013, at 12:08 PM, Xiaoxiao Liu <xiaoxiao.liu at kitware.com> wrote:
> 
>> Hi All, 
>> 
>> Just want to let you know that our favorite open-source journal the Insight Journal 
>> now supports ITK module submissions.
>> 
>> The modular code template can be found at:
>> http://www.insight-journal.org/help/submission
>> 
>> Here is an example of the ITK module submission:
>>   http://www.insight-journal.org/browse/publication/869
>> with the dashboard testing results shown on the review page.
>> 
>> Newly submitted  ITK modules will be tested with ITK 4.3.1 for now,  and hopefully will soon be tested with  latest release version of ITK at the time of submission.
>> 
>> The main advantages of organizing your code into a ITK module (using the itk module macros in the CMake code) for IJ submission are:
>> 1) Make it easier to integrate your code into ITK proper later. The modular structure makes you to think about the module dependencies and categorization of your code earlier on.
>> 2) Make it easy to share your cool contribution to the community via the ITK Remote Module distribution mechanism : other ITK users/developers can fetch your code remotely by switching on a CMake variable at build time.
>> 3) Testing is easy when utilizing the testing infrastructure  (providing image comparisons) in ITK, just follow the example provided in the modular template.
>> 
>> Please let me know if you see problems or need help when submitting your modular ITK code.
>> Thanks.
>> 
>> --Best
>> Xiaoxiao
>> ---------------------------------------------
>> Xiaoxiao Liu, Ph.D.
>> R & D Engineer
>> Kitware Inc.
>> Clifton Park, NY
>> Phone: (518) 881-4924  or  (518) 371-3971 x124
>> 
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> 
> 
> 
> 
> -- 
> 
> 
> ---------------------------------------------
> Xiaoxiao Liu, Ph.D.
> R & D Engineer
> Kitware Inc.
> Clifton Park, NY
> Phone: (518) 881-4924  or  (518) 371-3971 x124
> 
> 
> 
> 
> -- 
> 
> 
> ---------------------------------------------
> Xiaoxiao Liu, Ph.D.
> R & D Engineer
> Kitware Inc.
> Clifton Park, NY
> Phone: (518) 881-4924  or  (518) 371-3971 x124
> 

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