[Insight-developers] How to run the tests: itkGDCMImageIOTest3
Luis Ibanez
luis.ibanez at kitware.com
Mon Mar 7 17:44:37 EST 2011
Hi Mark,
When you downloaded ITK...
did you follow the instruction in:
http://www.itk.org/Wiki/ITK/Git/Develop ?
In particular, did you run the script:
./Utilities/SetupForDevelopment.sh
as described in the instructions ?
--
If you go to the source tree of ITK,
do you have a directory:
ITK/Testing/Data ?
Is there anything inside that directory ?
If not, it means that you didn't run that
script, or that something went wrong
when you ran it.
Luis
----------------------------------------------
On Mon, Mar 7, 2011 at 5:33 PM, Mark Roden <mmroden at gmail.com> wrote:
> Hi Luis,
>
> 0) Good, I thought so.
>
> 1) When I do that, after building 'testing', I get the following:
> Mark-Rodens-MacBook-Pro:bin mmroden$ ctest -R itkGDCMImageIOTest3
> Test project /Users/mmroden/Documents/src/itk/itk-build-unix/bin
> No tests were found!!!
>
> That's what's causing me some consternation. Is there something else
> I need to do to bring those tests out? Because when I run the IOTests
> under xcode, which brings up a testing app, that test isn't listed
> either. I do see it in the cmakelists, I just don't know how to get
> there from here.
>
> Thanks,
> Mark
>
> On Mon, Mar 7, 2011 at 2:30 PM, Luis Ibanez <luis.ibanez at kitware.com> wrote:
>> Hi Mark,
>>
>> 0) You don't need GDCM data to run this test.
>>
>> The input file that is uses is in:
>>
>> ITK/Testing/Data/Input/012345.002.050
>>
>> For details please look at lines 1057-1061 of
>> the file ITK/Testing/Code/IO/CMakeLists.txt:
>>
>> add_test(itkGDCMImageIOTest3 ${TestDriver} itkGDCMImageIOTest
>> ${ITK_DATA_ROOT}/Input/012345.002.050
>> ${ITK_TEST_OUTPUT_DIR}/itkGDCMImageIOTest3.dcm
>> ${ITK_TEST_OUTPUT_DIR}/itkGDCMImageIOTest3.png
>> ${ITK_TEST_OUTPUT_DIR}/itkGDCMRescaleImageIOTest3.dcm)
>>
>>
>> 1) To run this single test you can "cd" into
>> the ITK binary directory and type:
>>
>> ctest -R itkGDCMImageIOTest3
>>
>> 2) If you want the actual command line that
>> directly executes this test, type:
>>
>> ctest -R itkGDCMImageIOTest3 -V -N
>>
>> you will get something like:
>>
>> ITK_BINARY_DIR/bin/IOCxxTests "itkGDCMImageIOTest"
>> "/home/ibanez/src/ITK/Testing/Data/Input/012345.002.050"
>> "/home/ibanez/bin/ITK/Release/Testing/Temporary/itkGDCMImageIOTest3.dcm"
>> "/home/ibanez/bin/ITK/Release/Testing/Temporary/itkGDCMImageIOTest3.png"
>> "/home/ibanez/bin/ITK/Release/Testing/Temporary/itkGDCMRescaleImageIOTest3.dcm"
>>
>> 4) Here is the link to the same tests as it is executed
>> in the Dashboard machines:
>>
>> http://www.cdash.org/CDash/testSummary.php?project=2&name=itkGDCMImageIOTest3&date=2011-03-07
>>
>>
>> Luis
>>
>>
>> -------------------------------------------
>> On Sat, Mar 5, 2011 at 7:50 PM, Mark Roden <mmroden at gmail.com> wrote:
>>> Hi Luis,
>>>
>>> OK, now I've spent quite a bit of time trying to fix this patch and
>>> this failing test with no luck. There has to be a better way.
>>>
>>> How can I find just this test to run it from the command line? I've
>>> cmade everything using unix makefiles on my mac using Bradley
>>> Lowecamp's switches to expose warnings:
>>>
>>> Cxx : -Wall -Wextra -Wunused -Wpointer-arith -Winvalid-pch
>>> -Wcast-align -Woverloaded-virtual -Wshadow -Wwrite-strings
>>> -Wstrict-null-sentinel
>>> C: -Wall -Wextra -Wunused -Wpointer-arith -Winvalid-pch -Wcast-align
>>> -Wno-deprecated-declarations -Wno-uninitialized
>>>
>>> I then run make with default options on, as well as testing and
>>> examples. Everything builds, no tests are produced (or are they in
>>> some directory that I don't know about).
>>>
>>> In what may not be a related error, if I turn on anything in gdcm (ie,
>>> gdcm testing), I'll get these cmake errors:
>>>
>>> CMake Error at Utilities/gdcm/CMakeLists.txt:510 (SUBDIRS):
>>> subdirs Incorrect SUBDIRS command. Directory: Testing does not exists.
>>>
>>>
>>> If you want to build the test suite, you must set GDCM_DATA_ROOT
>>> (advanced option) to the full path name of the gdcmData directory; if
>>> you don't want, disable GDCM_BUILD_TESTING.
>>> What is gdcmData? Please read:
>>> http://sourceforge.net/apps/mediawiki/gdcm/index.php?title=General_questions#What_is_gdcmData_.3F
>>> CMake Error at Utilities/gdcm/Utilities/CMakeLists.txt:54 (SUBDIRS):
>>> subdirs Incorrect SUBDIRS command. Directory: gdcmmd5 does not exists.
>>>
>>>
>>> Configuring incomplete, errors occurred!
>>>
>>> The second error makes sense, since I haven't put the gdcm testing
>>> data in their yet (do I need that for the failing test for this
>>> patch?). But what's the deal with that first error? The 'Testing'
>>> directory does 'exists' (sic) in the cmake target directory.
>>>
>>> If I set the testing directory to be the directory from the gdcm root,
>>> CMake now reports:
>>> CMake Error at Utilities/gdcm/CMakeLists.txt:510 (SUBDIRS):
>>> subdirs Incorrect SUBDIRS command. Directory: Testing does not exists.
>>>
>>>
>>> CMake Error at Utilities/gdcm/Utilities/CMakeLists.txt:54 (SUBDIRS):
>>> subdirs Incorrect SUBDIRS command. Directory: gdcmmd5 does not exists.
>>>
>>>
>>> Configuring incomplete, errors occurred!
>>>
>>> If this is related to the failing test, then I'll need to fix it in
>>> order to fix the test, right?
>>>
>>> I'd like to just run directly so that I can fix that particular test
>>> (and perhaps develop further tests that check codecs other than jpeg).
>>>
>>> Thanks,
>>> Mark
>>>
>>>
>>> On Fri, Mar 4, 2011 at 9:58 AM, Code Review <review at kitware.com> wrote:
>>>> From Mathieu Malaterre <mathieu.malaterre at gmail.com>:
>>>>
>>>> Mathieu Malaterre has posted comments on this change.
>>>>
>>>> Change subject: COMP: attempts to fix gdcm function hiding warnings
>>>> ......................................................................
>>>>
>>>>
>>>> Patch Set 1: Fails; I would prefer that you didn't submit this
>>>>
>>>> --
>>>> To view, visit http://review.source.kitware.com/1120
>>>> To unsubscribe, visit http://review.source.kitware.com/settings
>>>>
>>>> Gerrit-MessageType: comment
>>>> Gerrit-Change-Id: I413102b25d1c9eee60eace2585c2f857ad564a67
>>>> Gerrit-PatchSet: 1
>>>> Gerrit-Project: ITK
>>>> Gerrit-Branch: master
>>>> Gerrit-Owner: Mark Roden <mmroden at gmail.com>
>>>> Gerrit-Reviewer: Hans J. Johnson <hans-johnson at uiowa.edu>
>>>> Gerrit-Reviewer: Luis Ibanez <luis.ibanez at kitware.com>
>>>> Gerrit-Reviewer: Mathieu Malaterre <mathieu.malaterre at gmail.com>
>>>>
>>>
>>
>
More information about the Insight-developers
mailing list