[Insight-developers] ITK 3.20.0 python WrapITK wrappers fail to build: too big?

[Gaëtan Lehmann]

Steve, Luis,

Splitting ImageToImageFilterB into smaller modules seems to be the way  
to go in ITK v3. The attached patch should help!

Fortunately, the wrapping in ITK v4 produces less code than the  
wrapping in ITK v3 – more than 2 times less — so we shouldn't have to  
do that.

Gaëtan

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Le 9 févr. 11 à 03:10, Luis Ibanez a écrit :

> Hi Steve,
>
> It looks like we need to split the ImageToImageFilterB module
> into smaller pieces.
>
> Most likely, adding an ImageToImageFilterC module...
>
> Gaetan:  Any suggestions ?
>
>
>    Luis
>
>
> ------------------------------------
> On Tue, Feb 8, 2011 at 8:37 PM, Steve M. Robbins <steve at sumost.ca>  
> wrote:
>> Hi,
>>
>> The Debian build of ITK 3.20.0 fails to build on the powerpc
>> build daemon [1] with the diagnostic:
>>
>>
>> [ 23%] Building CXX object Wrapping/WrapITK/Modules/Base/CMakeFiles/ 
>> _BasePython.dir/wrap_itkImageToImageFilterBPython.o
>> cd /build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ 
>> insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Wrapping/WrapITK/ 
>> Modules/Base && /usr/bin/g++   -D_BasePython_EXPORTS -DSWIG_GLOBAL - 
>> Wno-deprecated  -Wno-deprecated  -ftemplate-depth-50 -Wall -Wno- 
>> deprecated -w  -ftemplate-depth-50 -Wall -Wno-deprecated -O3 - 
>> DNDEBUG -fPIC -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- 
>> m2NGDH/insighttoolkit-3.20.0/Code/Review/Statistics -I/build/buildd- 
>> insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/ 
>> Review -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ 
>> insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/core -I/ 
>> build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ 
>> insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/vcl -I/ 
>> build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ 
>> insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/v3p/ 
>> netlib -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ 
>> insighttoolkit-3.20.0/Utilities/vxl/core -I/build/buildd- 
>> insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ 
>> Utilities/vxl/vcl -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- 
>> m2NGDH/insighttoolkit-3.20.0/Utilities/vxl/v3p/netlib -I/build/ 
>> buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ 
>> Utilities -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ 
>> insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities -I/build/ 
>> buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ 
>> Utilities/itkExtHdrs -I/build/buildd-insighttoolkit_3.20.0-6- 
>> powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/nifti/znzlib -I/ 
>> build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ 
>> insighttoolkit-3.20.0/Utilities/nifti/niftilib -I/build/buildd- 
>> insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ 
>> Utilities/expat -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- 
>> m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/expat - 
>> I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ 
>> insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/DICOMParser - 
>> I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ 
>> insighttoolkit-3.20.0/Utilities/DICOMParser -I/build/buildd- 
>> insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj- 
>> powerpc-linux-gnu/Utilities/NrrdIO -I/build/buildd- 
>> insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ 
>> Utilities/NrrdIO -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- 
>> m2NGDH/insighttoolkit-3.20.0/Utilities/MetaIO -I/build/buildd- 
>> insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/ 
>> SpatialObject -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- 
>> m2NGDH/insighttoolkit-3.20.0/Code/Numerics/NeuralNetworks -I/build/ 
>> buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ 
>> Code/Numerics/FEM -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- 
>> m2NGDH/insighttoolkit-3.20.0/Code/IO -I/build/buildd- 
>> insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/ 
>> Numerics -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ 
>> insighttoolkit-3.20.0/Code/Common -I/build/buildd- 
>> insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/ 
>> BasicFilters -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ 
>> insighttoolkit-3.20.0/Code/Algorithms -I/build/buildd- 
>> insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj- 
>> powerpc-linux-gnu -I/usr/include/gdcm-2.0 -I/usr/include/vtk-5.4 -I/ 
>> usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/ 
>> include/tcl8.5 -I/usr/include/python2.6 -I/usr/lib/jvm/default-java/ 
>> include -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/lib/ 
>> jvm/java-6-openjdk/include -I/build/buildd-insighttoolkit_3.20.0-6- 
>> powerpc-m2NGDH/insighttoolkit-3.20.0/Wrapping/WrapITK/Modules/ 
>> Base   -o CMakeFiles/_BasePython.dir/ 
>> wrap_itkImageToImageFilterBPython.o -c /build/buildd- 
>> insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj- 
>> powerpc-linux-gnu/Wrapping/WrapITK/Modules/Base/ 
>> wrap_itkImageToImageFilterBPython.cxx
>> /tmp/cchG87Lf.s: Assembler messages:
>> /tmp/cchG87Lf.s:2649452: Error: operand out of range  
>> (0x0000000000008008 is not between 0xffffffffffff8000 and  
>> 0x0000000000007fff)
>> /tmp/cchG87Lf.s:2649474: Error: operand out of range  
>> (0x0000000000008004 is not between 0xffffffffffff8000 and  
>> 0x0000000000007fff)
>> [ ... repeated dozens of times ... ]
>>
>>
>> Google suggests [2] this is a symptom of some table overflowing.   
>> Any suggestions on how to work around this?
>>
>> [1] https://buildd.debian.org/fetch.cgi?pkg=insighttoolkit&arch=powerpc&ver=3.20.0-6&stamp=1297198904&file=log&as=raw
>> [2] https://bugzilla.redhat.com/show_bug.cgi?id=427700
>>    http://gcc.gnu.org/bugzilla/show_bug.cgi?id=28904
>>
>>
>> Thanks,
>> -Steve
>>
>>
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>>
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-- 
Gaëtan Lehmann
Biologie du Développement et de la Reproduction
INRA de Jouy-en-Josas (France)
tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
http://voxel.jouy.inra.fr  http://www.itk.org
http://www.mandriva.org  http://www.bepo.fr

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