[Insight-developers] ITK Shared Libs on Mac

[Luis Ibanez]

Hi Nicolas,

Please run the following command in your executable
and let us know what you find.


                         otool      -L     executable


It should list all the shared libraries that your executable
depends on.

It is quite likely that you have some other version of
shared libraries lurking around...


      Luis



-----------------------------------------------------------------------
On Thu, Aug 11, 2011 at 1:05 PM, Nicolas Rannou <nicolas.lists at gmail.com> wrote:
> Hi all,
> I'm having hard time debugging issues related to ITK and Mac.
> I can use my application on STATIC without any problem.
> If I try to go to SHARED mode on mac (to generate installers) my application
> is not working anymore: sometimes it crashes, sometimes it works.
> SHARED mode is working on windows and on linux!
> When it crashes, it crashes at random locations.
> Nevertheless, those locations are always itk-based objects.(See at the end
> of the mail several bt to illustrate my sayings)
> I tried my app with the ITK release branch (github) and with the ITK
> official release tar (http://itk.org/ITK/resources/software.html)
> Did somebody already experienced this issue?
> Would somebody have any suggestion about how to fix/trac/debug this issue?
> I assume the problem is related to ITK SmartPointers being erased whereas
> they shouldn't?
>
> Thanks a lot,
> Nicolas
> ________________________________________________________________________
> ===============================================================
> ________________________________________________________________________
> Application Specific Information:
> objc[14057]: garbage collection is OFF
> *** error for object 0x7fab9a95ea10: pointer being freed was not allocated
> ________________________________________________________________________
> ===============================================================
> ________________________________________________________________________
> Exception Type:  EXC_BAD_ACCESS (SIGSEGV)
> Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000018
> VM Regions Near 0x18:
> -->
>     __TEXT                 000000010b0a7000-000000010b1f9000 [ 1352K]
> r-x/rwx SM=COW  /Users/USER/*/gofigure.app/Contents/MacOS/gofigure
> Application Specific Information:
> objc[11040]: garbage collection is OFF
> Thread 0:: Dispatch queue: com.apple.main-thread
> 0   libQGoGui.0.8.dylib           0x000000010b777654
> itk::Index<3u>::operator[](unsigned int) + 20 (itkIndex.h:210)
> 1   libQGoGui.0.8.dylib           0x000000010b7831c5
> itk::ImageLinearConstIteratorWithIndex<itk::Image<unsigned char, 3u>
>>::operator++() + 49 (itkImageLinearConstIteratorWithIndex.h:196)
> 2   libQGoGui.0.8.dylib           0x000000010b5451e2
> itk::LabelImageToLabelMapFilter<itk::Image<unsigned char, 3u>,
> itk::LabelMap<itk::ShapeLabelObject<bool, 3u> >
>>::ThreadedGenerateData(itk::ImageRegion<3u> const&, int) + 676
> (itkLabelImageToLabelMapFilter.txx:104)
> 3   libQGoGui.0.8.dylib           0x000000010b4f30c1
> itk::ImageSource<itk::LabelMap<itk::ShapeLabelObject<bool, 3u> >
>>::ThreaderCallback(void*) + 243 (itkImageSource.txx:296)
> 4   libITKCommon.3.20.dylib       0x00000001123216b1
> itk::MultiThreader::SingleMethodExecute() + 565
> 5   libQGoGui.0.8.dylib           0x000000010b541bd9
> itk::ImageSource<itk::LabelMap<itk::ShapeLabelObject<bool, 3u> >
>>::GenerateData() + 239 (itkImageSource.txx:244)
> 6   libITKCommon.3.20.dylib       0x000000011233c63a
> itk::ProcessObject::UpdateOutputData(itk::DataObject*) + 628
> 7   libQGoGui.0.8.dylib           0x000000010b8072cc
> itk::ImageBase<3u>::UpdateOutputData() + 124 (itkImageBase.txx:280)
> 8   libITKCommon.3.20.dylib       0x000000011233c476
> itk::ProcessObject::UpdateOutputData(itk::DataObject*) + 176
> 9   libQGoGui.0.8.dylib           0x000000010b8072cc
> itk::ImageBase<3u>::UpdateOutputData() + 124 (itkImageBase.txx:280)
> 10  libQGoGui.0.8.dylib           0x000000010b545c1b
> itk::LabelImageToShapeLabelMapFilter<itk::Image<unsigned char, 3u>,
> itk::LabelMap<itk::ShapeLabelObject<bool, 3u> > >::GenerateData() + 1049
> (itkLabelImageToShapeLabelMapFilter.txx:88)
> ________________________________________________________________________
> ===============================================================
> ________________________________________________________________________
> Exception Type:  EXC_BAD_ACCESS (SIGSEGV)
> Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000018
> VM Regions Near 0x18:
> -->
>     __TEXT                 000000010b92c000-000000010ba7e000 [ 1352K]
> r-x/rwx SM=COW  /Users/USER/*/gofigure.app/Contents/MacOS/gofigure
> Application Specific Information:
> objc[11102]: garbage collection is OFF
> Thread 0:: Dispatch queue: com.apple.main-thread
> 0   libQGoGui.0.8.dylib           0x000000010bd65e5d
> itk::SmartPointer<itk::ShapeLabelObject<bool, 3u> >::operator->() const + 27
> (itkSmartPointer.h:70)
> 1   libQGoGui.0.8.dylib           0x000000010bde422a
> itk::ShapeLabelObject<bool, 3u>::New() + 186 (itkShapeLabelObject.h:54)
> 2   libQGoGui.0.8.dylib           0x000000010bde43c0
> itk::LabelMap<itk::ShapeLabelObject<bool, 3u> >::SetLine(itk::Index<3u>
> const&, unsigned long const&, bool const&) + 252 (itkLabelMap.txx:291)
> 3   libQGoGui.0.8.dylib           0x000000010bdc81cf
> itk::LabelImageToLabelMapFilter<itk::Image<unsigned char, 3u>,
> itk::LabelMap<itk::ShapeLabelObject<bool, 3u> >
>>::ThreadedGenerateData(itk::ImageRegion<3u> const&, int) + 657
> (itkLabelImageToLabelMapFilter.txx:120)
> 4   libQGoGui.0.8.dylib           0x000000010bd760c1
> itk::ImageSource<itk::LabelMap<itk::ShapeLabelObject<bool, 3u> >
>>::ThreaderCallback(void*) + 243 (itkImageSource.txx:296)
> 5   libITKCommon.3.20.dylib       0x0000000112bd06b1
> itk::MultiThreader::SingleMethodExecute() + 565
> 6   libQGoGui.0.8.dylib           0x000000010bdc4bd9
> itk::ImageSource<itk::LabelMap<itk::ShapeLabelObject<bool, 3u> >
>>::GenerateData() + 239 (itkImageSource.txx:244)
> 7   libITKCommon.3.20.dylib       0x0000000112beb63a
> itk::ProcessObject::UpdateOutputData(itk::DataObject*) + 628
> 8   libQGoGui.0.8.dylib           0x000000010c08a2cc
> itk::ImageBase<3u>::UpdateOutputData() + 124 (itkImageBase.txx:280)
> 9   libITKCommon.3.20.dylib       0x0000000112beb476
> itk::ProcessObject::UpdateOutputData(itk::DataObject*) + 176
> 10  libQGoGui.0.8.dylib           0x000000010c08a2cc
> itk::ImageBase<3u>::UpdateOutputData() + 124 (itkImageBase.txx:280)
>
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