[Insight-developers] BillsBasement Nightly Failing Test

[Bradley Lowekamp]

Hello,

I am glad this was tracked down! Sorry it was my fault :(

Giving it a quick look I see a small problem with this change:

http://public.kitware.com/cgi-bin/viewcvs.cgi/Code/IO/itkMetaImageIO.cxx?root=Insight&r1=1.92&r2=1.93

nDim and the dimensionality of m_RegionIO may not match. Not sure why  
it'd be failing since the 30th if this was the case. I'll  have to  
give this some more thought tomorrow. When those dimensions don't  
match is a tricky case....

Brad

On Feb 23, 2009, at 10:04 PM, Luis Ibanez wrote:

> Hi Brad,
>
> This error seems to be related to the changes in MetaImage.
>
> Here is the backtrace that I get from GDB:
>
>
> -----------------------------------------------------------------------
>
> (gdb) run itkImageToCooccurrenceListAdaptorTest /home/ibanez/src/ 
> Insight/Testing/Data/Input/HeadMRVolume.mhd
> Starting program: /home/ibanez/bin/InsightGcc4.3/Debug/bin/ 
> itkStatisticsTests itkImageToCooccurrenceListAdaptorTest /home/ 
> ibanez/src/Insight/Testing/Data/Input/HeadMRVolume.mhd
> [Thread debugging using libthread_db enabled]
> /usr/include/c++/4.3/debug/vector:237:error: attempt to subscript  
> container
>     with out-of-bounds index 2, but container only holds 2 elements.
>
> Objects involved in the operation:
> sequence "this" @ 0x0xbf9e58fc {
>   type = NSt7__debug6vectorIlSaIlEEE;
> }
> [New Thread 0xb7d0e6c0 (LWP 8686)]
>
> Program received signal SIGABRT, Aborted.
> [Switching to Thread 0xb7d0e6c0 (LWP 8686)]
> 0xb7fe4430 in __kernel_vsyscall ()
> (gdb) bt
> #0  0xb7fe4430 in __kernel_vsyscall ()
> #1  0xb7d3b8a0 in raise () from /lib/tls/i686/cmov/libc.so.6
> #2  0xb7d3d268 in abort () from /lib/tls/i686/cmov/libc.so.6
> #3  0xb7ecd849 in __gnu_debug::_Error_formatter::_M_error () from / 
> usr/lib/libstdc++.so.6
> #4  0x083c9d14 in std::__debug::vector<long, std::allocator<long>  
> >::operator[] (this=0xbf9e58fc, __n=2) at /usr/include/c++/4.3/debug/ 
> vector:237
> #5  0x083c9d53 in itk::ImageIORegion::SetIndex (this=0xbf9e58f4,  
> i=2, idx=0) at /home/ibanez/src/Insight/Code/IO/itkImageIORegion.h:183
> #6  0x085a60b8 in itk::MetaImageIO::Read (this=0x9335f40,  
> buffer=0x93501a8) at /home/ibanez/src/Insight/Code/IO/ 
> itkMetaImageIO.cxx:840
> #7  0x084a2efb in itk::ImageFileReader<itk::Image<float, 2u>,  
> itk::DefaultConvertPixelTraits<float> >::GenerateData  
> (this=0x9331cf0) at /home/ibanez/src/Insight/Code/IO/ 
> itkImageFileReader.txx:406
> #8  0x0884cc49 in itk::ProcessObject::UpdateOutputData  
> (this=0x9331cf0) at /home/ibanez/src/Insight/Code/Common/ 
> itkProcessObject.cxx:991
> #9  0x0883412b in itk::DataObject::UpdateOutputData (this=0x9334410)  
> at /home/ibanez/src/Insight/Code/Common/itkDataObject.cxx:420
> #10 0x0883406a in itk::DataObject::Update (this=0x9334410) at /home/ 
> ibanez/src/Insight/Code/Common/itkDataObject.cxx:344
> #11 0x0884c00d in itk::ProcessObject::Update (this=0x9331cf0) at / 
> home/ibanez/src/Insight/Code/Common/itkProcessObject.cxx:619
> #12 0x084855f3 in itkImageToCooccurrenceListAdaptorTest (argc=2,  
> argv=0xbf9e6008) at /home/ibanez/src/Insight/Testing/Code/Numerics/ 
> Statistics/itkImageToCooccurrenceListAdaptorTest.cxx:53
> #13 0x0838fe3d in main (ac=3, av=0xbf9e6004) at /home/ibanez/src/ 
> Insight/Code/Common/itkTestMain.h:162
> -----------------------------------------------------------------------
>
> For some reason the itkImageIORegion thinks it is a 2D one
> while the MetaImage is asking for the component [2].
>
>
> Bill:
> I'm looking at the CVS diff of the day that you pointed out.
>
>
>
>       Luis
>
>
> -----------------------------------------------------------------------
>
> On Mon, Feb 23, 2009 at 7:34 PM, Luis Ibanez  
> <luis.ibanez at kitware.com> wrote:
> Hi Bill,
>
> I'm looking at it...
>
> building with gcc 4.3 and STL debug on...
>
>   Luis
>
>
> ---------------------------
>
> Bill Lorensen wrote:
> Luis,
>
> This build has stl debugging turned on. The test:
> http://www.cdash.org/CDash/viewTest.php?onlyfailed&buildid=277757
> shows an issue. Typically the culprit can be found by running the test
> from this build with gdb. However, I'm out of town and don't have
> access to my basement machine.
>
> I notice that other platforms are crashing also. The failures started
> on Jan 30. Since this test uses a meta file, I would look at the
> changes to MetaImageIO that occurred that day:
> http://public.kitware.com/cgi-bin/viewcvs.cgi/Code/IO/itkMetaImageIO.cxx?root=Insight&r1=1.89&r2=1.90
>
>
> Bill
>
>

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