[Insight-developers] TIFF and LSM images failing in sanchome.megason-lab.hms : release
Luis Ibanez
luis.ibanez at kitware.com
Sun Jul 27 09:58:21 EDT 2008
Hi Kishore,
Thanks a lot for running the tests.
Yes, the new tests show that the TIFF reading is failing for
the Fax formats. Note that this doesn't discard the possibility
that the writing may be failing as well, (we need to add the
complementary tests).
The next step is to figure out what is the layer in which
this is failing.
Some of the suspects are:
1) itkTIFFImageIO
2) itkTIFFImageIOBase
3) libtiff (3.5.2) distributed in Insight/Utilities
Let's start by checking numeral (3),
the TIFF library itself.
Could you please try the following:
A) Install the most recent TIFF library in
your Linux distribution.
B) Reconfigure ITK with CMake, go to the advanced
mode enable the flag:
ITK_USE_SYSTEM_TIFF
C) Build ITK, and submit an experimental build to
the Dashboard
in Linux this is as simple as going to the Binary
directory where you are building ITK, and typing:
make Experimental
This will build ITK, run all the tests, package
the results and submit them to the ITK Dashboard.
If this makes the test pass, then we will know that the
problem is that we need to update the libtiff library.
If the tests still fail, then we should probably explore
options (1) and (2).
Of course, any other suggestions are welcome,
Thanks
Luis
---------------------------
Kishore Mosaliganti wrote:
> Hi Luis,
>
> The additional two tests have failed as well. It seems there is
> something wrong with the read of images.
>
> http://www.cdash.org/CDash/viewTest.php?onlyfailed&buildid=132319
> <http://www.cdash.org/CDash/viewTest.php?onlyfailed&buildid=132319>
>
> Kishore
>
>
>
> On Sat, Jul 26, 2008 at 9:56 AM, Luis Ibanez <luis.ibanez at kitware.com
> <mailto:luis.ibanez at kitware.com>> wrote:
>
>
> Hi Kishore,
>
> Thanks a lot for the report.
>
> Now that we know this is reproducible, it is worth to track it
> before the release of ITK 3.8
>
>
> It is really unfortunate that this
> only fails when compiling in release mode... :-/
>
>
>
> Looking at the list of TIFF tests, only some of them fail.
>
> itkTIFFImageIOMultiPagesTest Ok
> itkTIFFImageIOTest Ok
> itkTIFFImageIOTest1 Ok
> itkTIFFImageIOTest2 Failed
> itkTIFFImageIOTest3 Failed
> itkTIFFImageIOTest4 Ok
> itkTIFFImageIOTest5 Failed
> itkTIFFImageIOTest6 Failed
> itkTIFFImageIOTest7 Ok
> itkTIFFImageIOTest8 Ok
> itkTIFFImageIOTest9 Ok
> itkTIFFImageIOTest10 Failed
> itkTIFFImageIOTest11 Ok
> itkTIFFImageIOTest12 Ok
>
>
> One way to start is to identify what is special about the five
> tests that are failing.
>
> Interestingly, all of them use the same executable, so the
> differences are in the type of TIFF images that are feed
> as input.
>
>
> For example
>
> itkTIFFImageIOTest2 reads RGBTestImageCCITTFax3.tif
> itkTIFFImageIOTest3 reads RGBTestImageCCITTFax4.tif
>
> So, the two Fax format fail...
>
> then
>
> itkTIFFImageIOTest5 reads RGBTestImageHuffmanRLE.tif
> itkTIFFImageIOTest6 reads RGBTestImageJPEG.tif
> itkTIFFImageIOTest10 reads RGBTestImageZIP.tif
>
>
> Looking at the output images, all of them have grid-like artifacts,
> which leads to suspects that the compression/decompression part of
> process is the one failing.
>
> Due to the way in which the test is setup, we don't know
> if what is failing is the reading or the writing.
>
> These test read an input TIFF image, save it again as TIFF,
> and then compare the saved image to a TIFF baseline.
>
> We are therefore adding duplicates of tests
>
> itkTIFFImageIOTest2
> itkTIFFImageIOTest3
>
> numbered now as
>
> itkTIFFImageIOTest13
> itkTIFFImageIOTest14
>
> They will read TIFF and Write MetaImage.
>
> This will help us discriminate whether the problem is on
> reading or during the writing of the images.
>
>
> If you have a chance, please submit an experimental build
> from your Fedora machine, or at least report your observations
> of the output of these tests back to the mailing list.
>
>
> Thanks a lot for your help,
>
>
> Luis
>
>
> --------------------------
> Kishore Mosaliganti wrote:
>
> Hi Luis,
>
> The tests you mention are failing in my machine as well:
> http://www.cdash.org/CDash/viewTest.php?onlyfailed&buildid=131560
> <http://www.cdash.org/CDash/viewTest.php?onlyfailed&buildid=131560>
> <http://www.cdash.org/CDash/viewTest.php?onlyfailed&buildid=131560
> <http://www.cdash.org/CDash/viewTest.php?onlyfailed&buildid=131560>>
>
>
> The configuration of my machine is:
> Linux Fedora Core 9, gcc-4.3.x86_64, compiled in Release mode.
>
> We face the same trouble on 3 PCs with similar configuration.
>
>
> Kishore
>
>
> Date: Wed, 23 Jul 2008 10:54:05 -0400
> From: Luis Ibanez <luis.ibanez at kitware.com
> <mailto:luis.ibanez at kitware.com> <mailto:luis.ibanez at kitware.com
> <mailto:luis.ibanez at kitware.com>>>
>
> Subject: [Insight-developers] TIFF and LSM images failing in
> sanchome.megason-lab.hms : release
> To: 'Alexandre Gouaillard' <Alexandre_Gouaillard at hms.harvard.edu
> <mailto:Alexandre_Gouaillard at hms.harvard.edu>
> <mailto:Alexandre_Gouaillard at hms.harvard.edu
> <mailto:Alexandre_Gouaillard at hms.harvard.edu>>>,
> Insight Developers <Insight-developers at itk.org
> <mailto:Insight-developers at itk.org>
> <mailto:Insight-developers at itk.org
> <mailto:Insight-developers at itk.org>>>
> Message-ID: <4887460D.70606 at kitware.com
> <mailto:4887460D.70606 at kitware.com>
> <mailto:4887460D.70606 at kitware.com
> <mailto:4887460D.70606 at kitware.com>>>
>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
>
> Hi Alex,
>
> The release submission from
>
>
> sanchome.megason-lab.hms
>
>
> has failing tests for TIFF and LSM images.
>
> This happend in the release build and not in the debug build.
>
>
> Do you have any hints on why these tests are failing in this
> platform ?
>
> We have submissions from other Linux 64 bits that seem to be
> working fine.
>
> Can we suspect of a configuration problem in this machine ?
>
>
>
> Thanks for any help,
>
>
> Luis
>
>
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