[Insight-developers] how to attack memory leaks
Miller, James V (Research)
millerjv at crd.ge.com
Thu Jun 16 10:27:45 EDT 2005
Andy,
One idea that Bill and I had was to divide the tests to valgrind/purify into
groups of say 200.
Then we could either have one machine running valgrind/purify and it would report
results for 200 tests a day. Over 5 days, we would have seen all the tests.
Alternatively, we could set up 5 machines to valgrind/purify 200 tests a day,
each one starting with a different set of 200. So each day, we would see
all the results. This works great for memory checking since we really don't care
whether the results are from the same machine.
What do we have to do to have CTest run a subset of tests for valgrind/purify?
Would we have to restructured the CMakeLists.txt files to construct
sublists of test?
Jim
-----Original Message-----
From: insight-developers-bounces+millerjv=crd.ge.com at itk.org
[mailto:insight-developers-bounces+millerjv=crd.ge.com at itk.org]On Behalf
Of Andy Cedilnik
Sent: Thursday, June 16, 2005 10:04 AM
To: Leila baghdadi
Cc: Mathieu Malaterre; insight-developers at itk.org; Luis Ibanez; Kent
Williams; Lorensen, William E (Research)
Subject: Re: [Insight-developers] how to attack memory leaks
Hi All,
CTest supports running subset of tests through a valgrind.
Dash16 takes about 210 minutes to compile everything and 35 minutes to
run tests. I should be able to add valgrind run for a subset of tests so
that we at least get some coverage. Maybe somebody else could setup
another one that will run different subset of tests?
Andy
Leila baghdadi wrote:
>well, maybe instead of running everything overnight, it can go through a
>portion of tests per night so that way by the end of a few nights the
>runs are complete,
>
>about this particular problem, I remember having a discussion with Jim,
>except I never got around it, I am pretty sure one of the mesh classes
>is leaking memory and it leaks big, I have 2 GB on my machine and before
>you know it BAM!
>
>I will try using valgrind, ( I just updated it on my machine) see if I
>can find out where the problem is
>
>
>Leila
>
>On Wed, 2005-06-15 at 16:55, Lorensen, William E (Research) wrote:
>
>
>>We have not had purify runs for several months. Our systems cannot complete the runs overnight. We should see how valgrind performs. I'm really uncomfortable that we are not running nightly memory tests. Dart2 may help.
>>
>>Bill
>>
>>-----Original Message-----
>>From: insight-developers-bounces+lorensen=crd.ge.com at itk.org
>>[mailto:insight-developers-bounces+lorensen=crd.ge.com at itk.org]On Behalf
>>Of Luis Ibanez
>>Sent: Wednesday, June 15, 2005 4:08 PM
>>To: Kent Williams
>>Cc: insight-developers at itk.org; Mathieu Malaterre
>>Subject: Re: [Insight-developers] how to attack memory leaks
>>
>>
>>
>>Kent,
>>
>>That's great,
>>
>>Maybe we should put together a ValgridnSuppresion.supp
>>file for ITK and maintain it in the CVS repository.
>>
>>It seems that there are similar files already in CMake and
>>VTK but each one is a bit tailored to their own project.
>>
>>We could start by combining Kent's file from Brains2 and
>>the one available in GDCM in Insight/Utilities/gdcm/CMake.
>>
>>
>>Any suggestions as to where to put this file in the ITK
>>directory ?
>>
>>
>>
>> Luis
>>
>>
>>
>>
>>--------------------------
>>Kent Williams wrote:
>>
>>
>>
>>>Here's my suppression file; it just deals with GL libraries, which --
>>>yes -- are a problem. I think there may be a few 'valgrind foolers' in
>>>ITK itself, so it wouldn't be a bad thing to have them suppressed...
>>>
>>>Mathieu Malaterre wrote:
>>>
>>>
>>>
>>>>>4. As good as valgrind is, it can be fooled, and regularly reports
>>>>>leaks where I suspect none is occuring. Something as basic as an
>>>>>assignement to a std::string can generate a leak report.
>>>>>
>>>>>
>>>>>
>>>>I believe this is answered in the FAQ of valgrind. You have to use
>>>>GLIBCPP_NEW = 1 (or GLIBCXX_NEW=1 if you use gcc > 3.4.0)
>>>>
>>>>As for the suppressions file, could you share it with us ? We do it in
>>>>ParaView, therefore people could have at least a good start, and would
>>>>only had a few. As a side note the only annoying suppression I had to
>>>>deal with is the one generated by the libGL.so (ATI or NVidia) since
>>>>they are doing some crazy things.
>>>>
>>>>So what about a : Insight/CMake/ITKValgrindSuppressions.supp ?
>>>>
>>>>HTH
>>>>Mathieu
>>>>
>>>>
>>>>
>>>------------------------------------------------------------------------
>>>
>>>{
>>> BUG-0
>>> Addrcheck,Memcheck:Param
>>> ioctl(generic)
>>> fun:ioctl
>>> obj:/usr/lib/libGL.so.1.0.7167
>>>}
>>>{
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>>{
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> obj:/usr/lib/libGL.so.1.0.7167
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>>>{
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>>> ioctl(generic)
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
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>>> ioctl(generic)
>>> fun:ioctl
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>> fun:*
>>>}
>>>{
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>>> Addrcheck,Memcheck:Param
>>> ioctl(generic)
>>> fun:ioctl
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>> fun:*
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>>>{
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>>> ioctl(generic)
>>> fun:ioctl
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>>{
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>>>{
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>>> fun:ioctl
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
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>>> Addrcheck,Memcheck:Cond
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>>>{
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>>>{
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
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>>> fun:ioctl
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
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>>> ioctl(generic)
>>> fun:ioctl
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>>{
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> Addrcheck,Memcheck:Cond
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>>> ioctl(generic)
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>> fun:*
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>>>{
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>>> Addrcheck,Memcheck:Cond
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>> fun:*
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>>>{
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>>{
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>>> Addrcheck,Memcheck:Param
>>> ioctl(generic)
>>> fun:ioctl
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>> fun:*
>>>}
>>>{
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>> fun:*
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>>>{
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> ioctl(generic)
>>> fun:ioctl
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>> fun:*
>>>}
>>>{
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>>> Addrcheck,Memcheck:Cond
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>>> Addrcheck,Memcheck:Cond
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> Addrcheck,Memcheck:Cond
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>>> Addrcheck,Memcheck:Cond
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>>> Addrcheck,Memcheck:Value4
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>>{
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>>{
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>>{
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>>> Addrcheck,Memcheck:Param
>>> ioctl(generic)
>>> fun:ioctl
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-86
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>>{
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> Addrcheck,Memcheck:Cond
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>>> Addrcheck,Memcheck:Cond
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>>> Addrcheck,Memcheck:Cond
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>>> Addrcheck,Memcheck:Cond
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>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>> Addrcheck,Memcheck:Cond
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>>> Addrcheck,Memcheck:Cond
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>>> Addrcheck,Memcheck:Cond
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>>> Addrcheck,Memcheck:Cond
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
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>>>{
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>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-134
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-135
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-136
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-137
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-138
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-139
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-140
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-141
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-142
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-143
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-144
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-145
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-146
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-147
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-148
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-149
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-150
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-151
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-152
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-153
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-154
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-155
>>> Addrcheck,Memcheck:Cond
>>> obj:/usr/lib/libGLcore.so.1.0.7167
>>>}
>>>{
>>> BUG-156
>>> Addrcheck,Memcheck:Cond
>>> fun:_nv000848gl
>>> fun:*
>>>}
>>>{
>>> BUG-157
>>> Addrcheck,Memcheck:Cond
>>> fun:_nv000848gl
>>> fun:*
>>>}
>>>{
>>> BUG-158
>>> Addrcheck,Memcheck:Cond
>>> fun:_nv000848gl
>>> fun:*
>>>}
>>>{
>>> BUG-159
>>> Addrcheck,Memcheck:Cond
>>> fun:_nv000848gl
>>> fun:*
>>>}
>>>{
>>> BUG-160
>>> Addrcheck,Memcheck:Param
>>> fun:_X11TransWrite
>>> fun:*
>>>}
>>>
>>>
>>>------------------------------------------------------------------------
>>>
>>>_______________________________________________
>>>Insight-developers mailing list
>>>Insight-developers at itk.org
>>>http://www.itk.org/mailman/listinfo/insight-developers
>>>
>>>
>>
>>_______________________________________________
>>Insight-developers mailing list
>>Insight-developers at itk.org
>>http://www.itk.org/mailman/listinfo/insight-developers
>>_______________________________________________
>>Insight-developers mailing list
>>Insight-developers at itk.org
>>http://www.itk.org/mailman/listinfo/insight-developers
>>
>>
>
>_______________________________________________
>Insight-developers mailing list
>Insight-developers at itk.org
>http://www.itk.org/mailman/listinfo/insight-developers
>
>
--
Andy Cedilnik
Kitware Inc.
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